Citrus Sinensis ID: 046656
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1326 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.971 | 0.898 | 0.685 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.973 | 0.907 | 0.678 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.981 | 0.892 | 0.670 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.981 | 0.892 | 0.669 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.969 | 0.894 | 0.668 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.968 | 0.874 | 0.659 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.984 | 0.904 | 0.651 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.987 | 0.902 | 0.644 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.981 | 0.889 | 0.658 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.906 | 0.645 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1936 bits (5016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 921/1344 (68%), Positives = 1092/1344 (81%), Gaps = 56/1344 (4%)
Query: 14 RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS-----------------------LGL 50
R++ F RS R+E D++EALKWAA EKLP+ LG
Sbjct: 31 RNNGVEIFSRSSRDE---DDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDLGF 87
Query: 51 QERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALP 110
QER+ L+++LVKV D DNEKF+LKL+ R DRVGI+LP +EVRYEHLNI+A+A++ S++LP
Sbjct: 88 QERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRSLP 147
Query: 111 TFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL 170
TF +F TN +E NS+HIL+++K+ LTILKD+SGIIKP RMTLLLGPPSSGKTTLLLAL
Sbjct: 148 TFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLLAL 207
Query: 171 AGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230
AG+LD +LKV+G+V+YNGH+++EFVPQRTAAYISQHD+HIGEMTVRETL FSARCQGVGS
Sbjct: 208 AGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGS 267
Query: 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290
R++ML EL+RREK A IKPD ID++MKAAATEGQEANV+TDY LK+LGLD+CADT+VGD
Sbjct: 268 RFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMVGD 327
Query: 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
+M+RGISGGQKKR+TTGEM+VGP+ ALFMDEIS GLDSSTT+ IVNSLRQ++ IL GTAV
Sbjct: 328 DMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAV 387
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
ISLLQPAPETY+LFDDIILLSDG IVYQGP + VL+FFESMGFKCP+RK VADFLQEVTS
Sbjct: 388 ISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTS 447
Query: 411 RKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYG 470
+KDQ+QYW R PYRFIT +EF+EA+QSFHVG+KL DEL TP DK+K HPAALT + YG
Sbjct: 448 KKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEKYG 507
Query: 471 VGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530
+G KEL K RE LL+KRNSFVY+FK QL+ MAL++ TLFFR M +D+ DGGIY
Sbjct: 508 IGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYA 567
Query: 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSI 590
GA+FF VIM FNGMS+++MT+ KLP+FYKQR L F+P+WAYA+P+WILKIP++ +EV +
Sbjct: 568 GALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGL 627
Query: 591 WVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVF 650
WV LTYY IGFDPNI R KQ LLL+ +NQMAS +FRFI A GR M VA +FGSFAL++
Sbjct: 628 WVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQ 687
Query: 651 FAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLK 710
FA GGFVLS+DD+ + WIWGYW SPMMY+ N+I+ NEF G W E+LG V+K
Sbjct: 688 FALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVK 747
Query: 711 SRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIG 770
SRGFFP A+WYWIG+GA++GF ++FN ++L+L +LN F+KPQAV+ E+ E N + +
Sbjct: 748 SRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGE-NAENGEVS 806
Query: 771 GTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGV 830
I + G + S S+N+ K+GMVLPFEP+S+TFDDV YS DMP+EMK +G
Sbjct: 807 SQITSTDGGDSISESQNN---------KKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGA 857
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890
ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQ
Sbjct: 858 GEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQ 917
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
ETF RISGYCEQNDIHSP VTVYESL+YSAWLRL +VD +TRKMF++E+MELVEL PLR
Sbjct: 918 ETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLR 977
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
+LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+T
Sbjct: 978 SALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1037
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFM 1070
GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG +S LI Y + P
Sbjct: 1038 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNP-------- 1089
Query: 1071 KAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPAP 1130
GV KIK+GYNPATWMLEVT++ +E+ LGIDFT +YK+SDLYRRNKALI EL P P
Sbjct: 1090 ----GVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRP 1145
Query: 1131 DSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGT 1190
S+D++F T YS+SF+ Q +ACLWKQHWSYWRNP Y AVRF+FTT IAL FGTMFWD+GT
Sbjct: 1146 GSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGT 1205
Query: 1191 KTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQV 1250
K ++QDL NAMGSMY AV F+G Q SSVQPVVA+ERTV+YRE+ AGMYS + YAF QV
Sbjct: 1206 KVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQV 1265
Query: 1251 MIEIPYVLVLSVVYGVIVYAMIGFEWTAAK--------FFCLLYFTFYGMMTVAMTPNHN 1302
IEIPY+ V SV YG+IVYAMIGFEW K FF LLYFTFYGMM VA+TPN N
Sbjct: 1266 SIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQN 1325
Query: 1303 IAAIVSILFFGLWNVFSGFVIPRP 1326
+A+IV+ F+G+WN+FSGF+IPRP
Sbjct: 1326 VASIVAAFFYGVWNLFSGFIIPRP 1349
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1927 bits (4993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 920/1356 (67%), Positives = 1095/1356 (80%), Gaps = 65/1356 (4%)
Query: 6 STSRSAS--PRSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS---------------- 47
S R++S + S F RS REE D++EAL+WAA EKLP+
Sbjct: 12 SMRRNSSVWKKDSGREIFSRSSREE---DDEEALRWAALEKLPTFDRLRKGILTASHAGG 68
Query: 48 ---------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNI 98
LG Q+ ++L+++L+KV D ++EK + KL+ R DRVGI+LP +EVR++HL +
Sbjct: 69 PINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKV 128
Query: 99 EAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGP 158
EAE + +ALPTF +F +N + F N++H++ +KK TIL DVSGI+KPGRM LLLGP
Sbjct: 129 EAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGP 188
Query: 159 PSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218
PSSGKTTLLLALAG+LD LK +GRVTYNGH MNEFVPQRTAAYI Q+DVHIGEMTVRET
Sbjct: 189 PSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRET 248
Query: 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL 278
A++AR QGVGSRYDMLTELARREKEA IKPD ID+FMKA +T G++ NV+TDY LK+L
Sbjct: 249 FAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKIL 308
Query: 279 GLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSL 338
GL+VCADT+VGD+M+RGISGGQKKR+TTGEM+VGP+ ALFMDEIS GLDSSTT+ IVNSL
Sbjct: 309 GLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSL 368
Query: 339 RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPER 398
R +HI NGTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GP + V++FFE+MGFKCP R
Sbjct: 369 RNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPR 428
Query: 399 KSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSK 458
K VADFLQEVTS+KDQ QYW R+ PYRFI V+EF+EAFQSFHVG+++ DEL P DK+K
Sbjct: 429 KGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTK 488
Query: 459 SHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANM 518
SHPAALTTK YGVG+KEL K + SRE+LL+KRNSFVY FK QL MA ++ TLFFR M
Sbjct: 489 SHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEM 548
Query: 519 NKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWI 578
K + DG +Y GA+FF ++M FNGMS++SMT+AKLP+FYKQR L FYPAW Y+LP W+
Sbjct: 549 QKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWL 608
Query: 579 LKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIV 638
LKIPISF+E ++ F+TYY IGFDPN+GRLFKQ +LL+ +NQMASALF+ +AA GRNMIV
Sbjct: 609 LKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIV 668
Query: 639 AMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTT 698
A +FG+FA++VFFA GG VLS+DDI WIWGYW SP+MY QNAI+ANEFFGHSW +
Sbjct: 669 ANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVE 728
Query: 699 NSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILE 758
NS+E+LGV LKSRGF PHA+WYWIG GA++GFV+LFN GFTL+LTFLN KPQAVI E
Sbjct: 729 NSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAE 788
Query: 759 ESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYS 818
E S+ + +++ GVV A KKRGMVLPFEP+S+TFD+V YS
Sbjct: 789 EPASD---------------ETELQSARSEGVVEAGANKKRGMVLPFEPHSITFDNVVYS 833
Query: 819 ADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS 878
DMP+EM +G ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI
Sbjct: 834 VDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYID 893
Query: 879 GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIE 938
GNITISGYPK Q+TF RISGYCEQ DIHSP VTVYESL+YSAWLRL EVD RK+FIE
Sbjct: 894 GNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIE 953
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
E+MELVEL PLRQ+LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 954 EVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1013
Query: 999 IVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYL 1058
IVMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVGPLG S+ LI+Y
Sbjct: 1014 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYF 1073
Query: 1059 QLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRN 1118
+ +I G+ KI +GYNPATWMLEV++T++E ALG+DF +YK+S+LY+RN
Sbjct: 1074 E------------SIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRN 1121
Query: 1119 KALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIA 1178
K LI+ELS+PAP S+D+YFPT YS+SF Q +A LWKQHWSYWRNPPY AVRFLFT IA
Sbjct: 1122 KELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIA 1181
Query: 1179 LTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAG 1238
L FGTMFWD+G KTK QDL NAMGSMYTAV F+G Q +SVQPVV VERTV+YRE+ AG
Sbjct: 1182 LMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAG 1241
Query: 1239 MYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKFFCLLY--------FTFY 1290
MYS M YAFAQV IEIPYVLV ++VYG+IVYAMIGFEWTA KFF L+ FTFY
Sbjct: 1242 MYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFY 1301
Query: 1291 GMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
GMM VAMTPNH+IA++VS F+G+WN+FSGF+IPRP
Sbjct: 1302 GMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRP 1337
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1857 bits (4810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/1366 (67%), Positives = 1074/1366 (78%), Gaps = 65/1366 (4%)
Query: 10 SASPRSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS---------------------- 47
S S + F RS REE D++EAL+WAA EKLP+
Sbjct: 23 SGSMWRRGDDVFSRSSREE---DDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGG 79
Query: 48 --------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIE 99
LG +ER+ L+++LV+V D DNEKF+LKL+ R DRVGI++P +EVR+EHL E
Sbjct: 80 KGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAE 139
Query: 100 AEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPP 159
AE + + LPT + TN +E N++ IL +K+ + +L DVSGIIKP RMTLLLGPP
Sbjct: 140 AEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPP 199
Query: 160 SSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETL 219
SGKTTLLLALAG+L LK SG+VTYNGH M EFVP+RTAAYISQHD+HIGEMTVRETL
Sbjct: 200 GSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETL 259
Query: 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG 279
AFSARCQGVGSR+DMLTEL+RREK A IKPD ID FMKAAA GQEANV TDY LK+LG
Sbjct: 260 AFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILG 319
Query: 280 LDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLR 339
L++CADT+VGDEM+RGISGGQ+KR+TTGEM+VGPA ALFMDEIS GLDSSTTF IVNSLR
Sbjct: 320 LEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLR 379
Query: 340 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERK 399
Q +HIL GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGP E VL+FFESMGFKCP+RK
Sbjct: 380 QTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRK 439
Query: 400 SVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKS 459
VADFLQEVTS+KDQRQYW + PYRF+TV+EF AFQSFH G+ + +EL P DKSKS
Sbjct: 440 GVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKS 499
Query: 460 HPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMN 519
HPAAL T YG KEL KANI RE LL+KRNSFVY+F+ QL ++L++ TLFFR M
Sbjct: 500 HPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMK 559
Query: 520 KDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWIL 579
+DSV+ GGIY+GA+FF V+M FNG S++++TV KLP+F+KQR L FYPAW+Y +P+WIL
Sbjct: 560 RDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWIL 619
Query: 580 KIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVA 639
KIPI+F+EV +VFLTYY IGFD N+G FKQ LL+L INQMA +LFRFI A RNMIVA
Sbjct: 620 KIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVA 679
Query: 640 MSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKF--T 697
F SF L++F GGF+L+++ + WIWGYW SPMMYAQNAI NE GHSW K +
Sbjct: 680 NVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNS 739
Query: 698 TNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVI- 756
+ S E+LGVQVLKSRG FP A WYWIG GAMIGF +LFN FTL+LT+L + + +
Sbjct: 740 SASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVS 799
Query: 757 ---LEESESNYLDNRIGGTIQLSTYGS-----NSSHSKNSGVVRATQPKKRGMVLPFEPY 808
L+E +N L+ I G + LS+ + N + + ++ V T+ +RGMVLPF P
Sbjct: 800 EEELKEKRAN-LNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPL 858
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
SL+FD+V YS DMP+EMK +GV +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 859 SLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVL 918
Query: 869 AGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEV 928
AGRKTGGYI G+I ISGYPKKQETF R+SGYCEQNDIHSP VTVYESLL+SAWLRL +V
Sbjct: 919 AGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDV 978
Query: 929 DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988
DS TRKMFIEE+MELVELK LR +LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 979 DSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1038
Query: 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048
TSGLDARAAAIVMRTV+NTV TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY GPLG
Sbjct: 1039 TSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLG 1098
Query: 1049 SNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNI 1108
+SS+LI Y + +P GV KIKDGYNPATWMLEVT+ +E ALG+DF++I
Sbjct: 1099 HHSSELIKYFESIP------------GVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDI 1146
Query: 1109 YKHSDLYRRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNA 1168
YK S+LY+RNKALI++LS+PAPDS D+YFPT YS+S Q +ACLWKQ+ SYWRNPPYNA
Sbjct: 1147 YKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNA 1206
Query: 1169 VRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVER 1228
VRF FTT IAL FGT+FWD+G K ++QDLFNAMGSMY AV FIG C+SVQPVVAVER
Sbjct: 1207 VRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVER 1266
Query: 1229 TVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKF------- 1281
TV+YRE+ AGMYS YAF QV+IEIPY LV + VYG+IVYAMIGFEWTAAKF
Sbjct: 1267 TVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFM 1326
Query: 1282 -FCLLYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
F LLYFTFYGMM V +TPN++IA+IVS F+ +WN+FSGFVIPRP
Sbjct: 1327 VFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRP 1372
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1854 bits (4803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/1366 (66%), Positives = 1073/1366 (78%), Gaps = 65/1366 (4%)
Query: 10 SASPRSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS---------------------- 47
S S + F RS REE D++EAL+WAA EKLP+
Sbjct: 23 SGSMWRRGDDVFSRSSREE---DDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGG 79
Query: 48 --------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIE 99
LG +ER+ L+++LV+V D DNEKF+LKL+ R DRVGI++P +EVR+EHL E
Sbjct: 80 KGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAE 139
Query: 100 AEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPP 159
AE + + LPT + TN +E N++ IL +K+ + +L DVSGIIKP RMTLLLGPP
Sbjct: 140 AEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPP 199
Query: 160 SSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETL 219
SGKTTLLLALAG+L LK SG+VTYNGH M EFVP+RTAAYISQHD+HIGEMTVRETL
Sbjct: 200 GSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETL 259
Query: 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG 279
AFSARCQGVGSR+DMLTEL+RREK A IKPD ID FMKAAA GQEANV TDY LK+LG
Sbjct: 260 AFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILG 319
Query: 280 LDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLR 339
L++CADT+VGDEM+RGISGGQ+KR+TTGEM+VGPA ALFMDEIS GLDSSTTF IVNSLR
Sbjct: 320 LEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLR 379
Query: 340 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERK 399
Q +HIL GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGP E VL+FFES GFKCP+RK
Sbjct: 380 QTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRK 439
Query: 400 SVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKS 459
VADFLQEVTS+KDQRQYW + PYRF+TV+EF AFQSFH G+ + +EL P DKSKS
Sbjct: 440 GVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKS 499
Query: 460 HPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMN 519
HPAAL T YG KEL KANI RE LL+KRNSFVY+F+ QL ++L++ TLFFR M
Sbjct: 500 HPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMK 559
Query: 520 KDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWIL 579
+DSV+ GGIY+GA+FF V+M FNG S++++TV KLP+F+KQR L FYPAW+Y +P+WIL
Sbjct: 560 RDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWIL 619
Query: 580 KIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVA 639
KIPI+F+EV +VFLTYY IGFD N+G FKQ LL+L INQMA +LFRFI A RNMIVA
Sbjct: 620 KIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVA 679
Query: 640 MSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKF--T 697
F SF L++F GGF+L+++ + WIWGYW SPMMYAQNAI NE GHSW K +
Sbjct: 680 NVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNS 739
Query: 698 TNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVI- 756
+ S E+LGVQVLKSRG FP A WYWIG GAMIGF +LFN FTL+LT+L + + +
Sbjct: 740 SASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVS 799
Query: 757 ---LEESESNYLDNRIGGTIQLSTYGS-----NSSHSKNSGVVRATQPKKRGMVLPFEPY 808
L+E +N L+ I G + LS+ + N + + ++ V T+ +RGMVLPF P
Sbjct: 800 EEELKEKRAN-LNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPL 858
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
SL+FD+V YS DMP+EMK +GV +D+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 859 SLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVL 918
Query: 869 AGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEV 928
AGRKTGGYI G+I ISGYPKKQETF R+SGYCEQNDIHSP VTVYESLL+SAWLRL +V
Sbjct: 919 AGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDV 978
Query: 929 DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988
DS TRKMFIEE+MELVELK LR +LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 979 DSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1038
Query: 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048
TSGLDARAAAIVMRTV+NTV TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY GPLG
Sbjct: 1039 TSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLG 1098
Query: 1049 SNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNI 1108
+SS+LI Y + +P GV KIKDGYNPATWMLEVT+ +E ALG+DF++I
Sbjct: 1099 HHSSELIKYFESIP------------GVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDI 1146
Query: 1109 YKHSDLYRRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNA 1168
YK S+LY+RNKALI++LS+PAPDS D+YFPT YS+S Q +ACLWKQ+ SYWRNPPYNA
Sbjct: 1147 YKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNA 1206
Query: 1169 VRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVER 1228
VRF FTT IAL FGT+FWD+G K ++QDLFNAMGSMY AV FIG C+SVQPVVAVER
Sbjct: 1207 VRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVER 1266
Query: 1229 TVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKF------- 1281
TV+YRE+ AGMYS YAF QV+IEIPY LV + VYG+IVYAMIGFEWTAAKF
Sbjct: 1267 TVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFM 1326
Query: 1282 -FCLLYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
F LLYFTFYGMM V +TPN++IA+IVS F+ +WN+FSGFVIPRP
Sbjct: 1327 VFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRP 1372
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1849 bits (4790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 898/1344 (66%), Positives = 1097/1344 (81%), Gaps = 59/1344 (4%)
Query: 14 RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPSL-----------------------GL 50
R++ F RS R+E D++EALKWAA EKLP+ G+
Sbjct: 35 RNNGAEVFSRSARDE---DDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVDDSGV 91
Query: 51 QERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALP 110
ER+ L+++LVKV D DNEKF+LKL+ R DRVGI+ P +EVR+EHLNI+A+A++ S+ALP
Sbjct: 92 LERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDADAYVGSRALP 151
Query: 111 TFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL 170
TFT+F +N +E +SIHIL +KK+ +TILKDVSGI+KP RMTLLLGPP SGKTTLLLAL
Sbjct: 152 TFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPGSGKTTLLLAL 211
Query: 171 AGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230
AG+LDS+LKV+G+VTYNGH+++EFVPQRTAAYISQHD+HIGEMTVRETL FSARCQGVGS
Sbjct: 212 AGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGS 271
Query: 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290
RY+ML EL+RREK A IKPD ID+FMKAA+TEGQEA V+TDY LK+LGLD+CADT+VGD
Sbjct: 272 RYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADTMVGD 331
Query: 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
+M+RGISGGQKKR+TTGEM+VGP+ ALFMDEIS GLDSSTT+ IVNSL+Q++ I+ GTA+
Sbjct: 332 QMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMKGTAL 391
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
ISLLQPAPETY+LFDDIILLSDG IVY+GP E VL+FFESMGFKCPERK ADFLQEVTS
Sbjct: 392 ISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQEVTS 451
Query: 411 RKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYG 470
+KDQ+QYW+ R+ PYRFIT +EF+EA+QSFHVG+K++DEL+T DKSKSHPAALTT+ YG
Sbjct: 452 KKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTTQKYG 511
Query: 471 VGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530
+G ++L K RE LL++RNSFVY+FK QL +AL++ T+FFR M +DS DGGIY
Sbjct: 512 IGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDGGIYS 571
Query: 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSI 590
GA+FF VIM FNG+S++ MT+ KLP+FYKQR FYP+WAYA+P+WILKIP++F EV +
Sbjct: 572 GALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFAEVGM 631
Query: 591 WVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVF 650
WVFLTYY +GFDPN+GR FKQ LLLL +NQMASALFRFIAA GR M VA +FG+FAL++
Sbjct: 632 WVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFALLLQ 691
Query: 651 FAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLK 710
FA GGF+L+++D+ + WIWGYW SP+MY+ NAI+ NEF G W+ TE LG V++
Sbjct: 692 FALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAVVR 751
Query: 711 SRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIG 770
+RGFFP A+WYWIG+GA+ GF+++FNI ++++L +LN F+KPQA I +ESE+N ++
Sbjct: 752 ARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNESES--- 808
Query: 771 GTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGV 830
+ Q+++ S S+N KK+GMVLPF+P+S+TFD+V YS DMP EM+ G
Sbjct: 809 -SPQITSTQEGDSASEN---------KKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGT 858
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890
+++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQ
Sbjct: 859 SDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQ 918
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
+TF RISGYCEQNDIHSP VTV+ESL+YSAWLRL +V+ E R MF+EE+M+LVEL PLR
Sbjct: 919 DTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLR 978
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
+LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR V+NTV+T
Sbjct: 979 SALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 1038
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFM 1070
GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG S LI Y + +P
Sbjct: 1039 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIP-------- 1090
Query: 1071 KAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPAP 1130
GV KI +GYNPATWMLEVT++++E+ALG+DFT++YK SDLYRRNKALI+ELS P P
Sbjct: 1091 ----GVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRP 1146
Query: 1131 DSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGT 1190
+ D++F + +S+ F+ Q +ACLWKQHWSYWRNP Y AVR +FTT IAL FGTMFWD+GT
Sbjct: 1147 GTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGT 1206
Query: 1191 KTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQV 1250
K +NQDL NAMGSMY AV F+G Q SSVQPVV+VERTV+YREK AGMYS + YAFAQV
Sbjct: 1207 KVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQV 1266
Query: 1251 MIEIPYVLVLSVVYGVIVYAMIGFEWTAAK--------FFCLLYFTFYGMMTVAMTPNHN 1302
+IEIPY+ V + VYG+IVY+MIGFEWT AK FF LYFTF+GMMTVA+TPN N
Sbjct: 1267 LIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQN 1326
Query: 1303 IAAIVSILFFGLWNVFSGFVIPRP 1326
+A+IV+ F+ +WN+FSGF++PRP
Sbjct: 1327 VASIVAGFFYTVWNLFSGFIVPRP 1350
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1835 bits (4753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 889/1348 (65%), Positives = 1052/1348 (78%), Gaps = 64/1348 (4%)
Query: 29 EEDDEKEALKWAAHEKLP----------------------------------SLGLQERQ 54
EEDDE EAL+WAA +KLP SLG ER+
Sbjct: 50 EEDDE-EALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERR 108
Query: 55 RLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALPTFTS 114
L+++LV+V D DNE+F+LKL+ R RVGI++P +EVR+EHL +EAE + + +PT +
Sbjct: 109 ALLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLN 168
Query: 115 FFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174
TN IE N++ IL T+K+ L IL D+SGIIKP RMTLLLGPP SGKTT LLALAG+L
Sbjct: 169 SITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRL 228
Query: 175 DSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDM 234
LK SG+VTYNGH M +FVPQRTAAYISQHD+HIGEMTVRETL+FSARCQGVGSR+DM
Sbjct: 229 -KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDM 287
Query: 235 LTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294
LTEL RREK A IKPD +D FMKA+A EGQE+N++TDY LK+LGL++CADT+VGD+MVR
Sbjct: 288 LTELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVR 347
Query: 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLL 354
GISGGQ+KR+TTGEM+VGPA A FMDEIS GLDSSTTF IV SLRQ IHIL GTAVISLL
Sbjct: 348 GISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLL 407
Query: 355 QPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQ 414
QPAPETYDLFDDIILLSDG IVYQGP E VL+FFE MGFKCPERK VADFLQEVTSRKDQ
Sbjct: 408 QPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQ 467
Query: 415 RQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYGVGMK 474
+QYW + PYR++ ++EF+ AFQSFH G+ + +EL TP DKSKSHPAALTT YGV
Sbjct: 468 KQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAM 527
Query: 475 ELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMF 534
EL KANI RE LLIKRNSFVYIF+ IQL T++ ++ T+FFR M++DSV+DG I++GA+F
Sbjct: 528 ELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALF 587
Query: 535 FAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFL 594
FAV+M NG+S++ +T+ KLP+F+KQR L F+PAW Y +P+WILK P+SF+EV + F+
Sbjct: 588 FAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFM 647
Query: 595 TYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFG 654
+YY IGFDPN+GR FKQ LL+L ++QMA+ALFRF+ A RN+IVA FGSF L++F G
Sbjct: 648 SYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLG 707
Query: 655 GFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTN--STESLGVQVLKSR 712
GF+L++D +N WIWGYW SPMMYAQNA+ NEF GHSW K N S E+LGVQ L SR
Sbjct: 708 GFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSR 767
Query: 713 GFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIGGT 772
G FP A WYWIG GA++GF++LFNI FTL+LT+L K Q I EE N G
Sbjct: 768 GIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNV 827
Query: 773 IQLSTYGSNS------SHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMK 826
+ + T S++ S S + +QP +RGMVLPF P SLTF+D+ YS DMP+EMK
Sbjct: 828 LDVDTMASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMK 887
Query: 827 LKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886
G+ ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI+ISGY
Sbjct: 888 AHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGY 947
Query: 887 PKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
PKKQETF R+SGYCEQNDIHSP VTV ESLL+SAWLRL +VDS TRKMFIEE+MELVEL
Sbjct: 948 PKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVEL 1007
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
KPLR +LVGLPG +GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+N
Sbjct: 1008 KPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1067
Query: 1007 TVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVT 1066
TV TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG +SS+LI Y +
Sbjct: 1068 TVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFE------- 1120
Query: 1067 FIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELS 1126
I GV KI DGYNPATWMLEVT+ ++E AL +DF +IY+ S+L++RNKALI+ELS
Sbjct: 1121 -----GIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELS 1175
Query: 1127 KPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFW 1186
P P S ++YFPT YS+SF +Q LACLWKQH SYWRNPPYNA+R FTT IAL FGT+FW
Sbjct: 1176 TPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFW 1235
Query: 1187 DMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYA 1246
D+G K Q+QDLFNAMGSMY AV FIG SVQPVV+VERTV+YRE+ AGMYS + YA
Sbjct: 1236 DLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYA 1295
Query: 1247 FAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAK--------FFCLLYFTFYGMMTVAMT 1298
F QV IE PY LV SV+Y +IVY+MIGF+WT AK FF LLYFTFYGMM V +T
Sbjct: 1296 FGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLT 1355
Query: 1299 PNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
P++++A+IVS F+ +WN+F+GFVI RP
Sbjct: 1356 PSYHVASIVSSAFYAIWNLFTGFVISRP 1383
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1829 bits (4738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 887/1361 (65%), Positives = 1082/1361 (79%), Gaps = 55/1361 (4%)
Query: 5 GSTSRSASPRSSSEG---AFPRSPREEEEDDEKEALKWAAHEKLPS-------------- 47
GS R+AS + G AF RS REE D++EALKWAA EKLP+
Sbjct: 14 GSVRRTASSWRGTSGRSDAFGRSVREE---DDEEALKWAAIEKLPTYDRMRKGILTAGGV 70
Query: 48 -------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEA 100
LGLQER+ LI++LV+ + DNE+F+LKLR R +RVGI+ P +EVR+E+L+I+A
Sbjct: 71 EEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDA 130
Query: 101 EAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPS 160
EA++ ++ +PTFT+FF+N I +++ I+++ K+ ++IL D+SGII+PGRM+LLLGPP
Sbjct: 131 EAYVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPG 190
Query: 161 SGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220
SGKT+LLLALAG+LDS+LKVSGRVTYNGHDM+EFVPQRT+AYI QHD+HIGEMTVRETLA
Sbjct: 191 SGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLA 250
Query: 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL 280
FSARCQGVG+RYDMLTEL+RREKEA IKPD IDV+MKA + EGQE+ V+TDY LK+LGL
Sbjct: 251 FSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGL 309
Query: 281 DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQ 340
++CADT+VGD M+RGISGGQKKR+TTGEM+VGPA ALFMDEIS GLDSSTT+ IVNSLRQ
Sbjct: 310 EICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQ 369
Query: 341 NIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKS 400
++HIL GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGP E +L+FFE+MGFKCPERK
Sbjct: 370 SVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKG 429
Query: 401 VADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSH 460
VADFLQEVTSRKDQ QYW R+ PYR+I+V +FSEAF+ FHVG+ L ELR P D++++H
Sbjct: 430 VADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNH 489
Query: 461 PAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNK 520
PAALTT YG+ EL KA SRE+LL+KRNSFVYIFK++QL + + T+F R M++
Sbjct: 490 PAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHR 549
Query: 521 DSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILK 580
SV DG I++GAMF ++ FNG ++++M++AKLPIFYKQR L FYP+WAYALP W+LK
Sbjct: 550 RSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLK 609
Query: 581 IPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAM 640
IPISFLE ++W+ +TYY +GFDPNI R F+ +LL+ I+QMAS LFR +AA GR M+VA
Sbjct: 610 IPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVAD 669
Query: 641 SFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFT--T 698
+FGSFA ++ GGF++S+++I WIWGYW SP+MYAQNAI NEF GHSW K T
Sbjct: 670 TFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPT 729
Query: 699 NSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILE 758
S ++LGVQVLK RG F A WYWIG+GA++G+++LFNI F L L +L+ K QAV+ E
Sbjct: 730 QSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSE 789
Query: 759 ESESNYLDNRIGGTIQLSTYGSNSSHSKNS-----GVVRATQPKKRGMVLPFEPYSLTFD 813
E NR G ++L T G++S +S + G + +KRGMVLPF P S+TFD
Sbjct: 790 EELREKHVNRTGENVELLTLGTDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFD 849
Query: 814 DVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 873
++ YS DMP+EMK KGV ED+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT
Sbjct: 850 NIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 909
Query: 874 GGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETR 933
GGYI G+I+ISGYPKKQETF RI+GYCEQNDIHSP VTVYESLLYSAWLRL +EVDSE R
Sbjct: 910 GGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEAR 969
Query: 934 KMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
KMF+EE+MELVEL LR +LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 970 KMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1029
Query: 994 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSD 1053
ARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG NS
Sbjct: 1030 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCH 1089
Query: 1054 LISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSD 1113
LI+Y + I GV KIKDGYNPATWMLEVT+ +E LGI+F +Y++SD
Sbjct: 1090 LINYFE------------GIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSD 1137
Query: 1114 LYRRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLF 1173
LY+RNK LI ELS P P S D++FPT +S+ FF Q +ACLWKQH SYWRNP Y A R F
Sbjct: 1138 LYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFF 1197
Query: 1174 TTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYR 1233
TT IAL FGT+F ++G K + DLFN++GSMY AV FIG Q +VQP+V VERTV+YR
Sbjct: 1198 TTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYR 1257
Query: 1234 EKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAK--------FFCLL 1285
EK AGMYS + YAFAQV+IEIP++ + +VVYG+IVY++IGF+WT K FF +
Sbjct: 1258 EKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFM 1317
Query: 1286 YFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
YFTFYGMM VAMTPN +IAAIVS F+ +WN+F+GF+IPRP
Sbjct: 1318 YFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRP 1358
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1824 bits (4725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1369 (64%), Positives = 1065/1369 (77%), Gaps = 60/1369 (4%)
Query: 5 GSTSRSASPRSSSEGAFPRSP-REEEEDDEKEALKWAAHEKLPS---------------- 47
S R S S F RS R ++EDD++EAL+WAA E+LP+
Sbjct: 9 ASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 48 -------------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYE 94
LG +E + LI++LV+ D D+E+F+LKLR R DRVGI+ P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 95 HLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTL 154
+L +EA+ + ++ LPT + TN +EA N++HIL KK+ +T+L DVSGIIKP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 155 LLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMT 214
LLGPP SGKTTLLLALAG+LD LKVSG+VTYNGH M+EFVP+RTAAYISQHD+HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYY 274
VRETLAFSARCQGVG+RY+MLTELARREK A IKPD ID++MKA+A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 275 LKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHI 334
LK+LGLD+CADT+VG+EM+RGISGGQ+KR+TTGEM+VGPA ALFMDEIS GLDSSTT+ I
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 335 VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFK 394
VNSLRQ IHIL GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGP E VL+FFE MGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 395 CPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPL 454
CP RK VADFLQEVTSRKDQ QYW R+ PYRF+ V++F++AF+SFHVG+ + +EL P
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 455 DKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFF 514
D+++SHPAAL T YGV KEL KA I RE LL+KRN+F+YIFK + L+ MAL+ T FF
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 515 RANMNKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYAL 574
R +M D G IY+GA++FA+ FNG ++++MTV KLP+F+KQR L F+PAWAY +
Sbjct: 549 RTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 575 PAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGR 634
P+WIL+IPI+FLEV ++VF+TYY IGFDP++ R FKQ LLLL +NQM+SALFRFIA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 635 NMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWR 694
+M+V+ +FG +L+ F A GGF+L++ D+ WIWGYW SP+ YAQNAI NEF GHSW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 695 KFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQA 754
+ +LGV VLKSRG F A WYWIGLGA++G+ LLFN+ +T++L+ L+ F A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 755 VILEESESNYLDNRIGGTI--QLSTYGSNS----SH--SKNSGVVRA-TQPKKRGMVLPF 805
+ E++ N G + Q T SH +NSG+ A + ++GMVLPF
Sbjct: 788 SMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMVLPF 847
Query: 806 EPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 865
P S++F+DV YS DMP+ MK +G+ ED+L+LL GVSG+FRPGVLTALMGVSGAGKTTLM
Sbjct: 848 APLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLM 907
Query: 866 DVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925
DVLAGRKTGGYI G+I ISGYPKKQETF RISGYCEQNDIHSP VTVYESL++SAWLRL
Sbjct: 908 DVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLP 967
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985
+EVDSE RKMFIEE+M+LVEL LR +LVGLPG SGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 968 SEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1027
Query: 986 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
DEPTSGLDARAAAIVMRTV+NTV TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVG
Sbjct: 1028 DEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVG 1087
Query: 1046 PLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDF 1105
P+G NSS LI Y + I GV +IKDGYNPATWMLEVTS+ +E LG+DF
Sbjct: 1088 PVGQNSSKLIEYFE------------GIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDF 1135
Query: 1106 TNIYKHSDLYRRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPP 1165
+ IY+ S+LY+RNK LIEELS P P S D+ FPT YSRSF Q LACLWKQ+WSYWRNP
Sbjct: 1136 SEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPS 1195
Query: 1166 YNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVA 1225
Y AVR LFT IAL FGTMFW++GT+TK+ QDLFNAMGSMY AV +IG Q SVQPVV
Sbjct: 1196 YTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVV 1255
Query: 1226 VERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKF---- 1281
VERTV+YRE+ AGMYS YAF QV IE+PY++V +++YGV+VY+MIGFEWT AKF
Sbjct: 1256 VERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYL 1315
Query: 1282 ----FCLLYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
F LLYFTFYGMM V +TPN +IAAI+S F+ +WN+FSG++IPRP
Sbjct: 1316 FFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRP 1364
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1823 bits (4722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 903/1371 (65%), Positives = 1075/1371 (78%), Gaps = 69/1371 (5%)
Query: 2 ATDGSTSRSASPRSSSEGAFPRSPREEEEDDEKEALKWAAHEKLP--------------- 46
A +G SRS R+SS G E+ EDDE EAL+WAA EKLP
Sbjct: 32 ADNGVFSRS---RASSSG-------EDGEDDE-EALRWAALEKLPTYDRVRRAVLPVVEE 80
Query: 47 ---------------SLGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEV 91
SLG QER+ L+++LV+V + DNE+F+LKL+ R DRVGI++P +EV
Sbjct: 81 GGGGGEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEV 140
Query: 92 RYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGR 151
R+EHL EAE + + LPT + TN +E N++ IL KK+ + IL DVSGI+KP R
Sbjct: 141 RFEHLEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRR 200
Query: 152 MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIG 211
MTLLLGPP SGKTTLLLALAG+L +K SG+VTYNGH M +FVPQRTAAYISQHD+HIG
Sbjct: 201 MTLLLGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 260
Query: 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLT 271
EMTVRETL+FSARCQGVGSR+DMLTEL+RREK A IKPD ID FMKA+A EGQE N++T
Sbjct: 261 EMTVRETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLIT 320
Query: 272 DYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTT 331
DY LK+LGLD+CADT+VGD+MVRGISGGQ+KR+TTGEM+VGPA ALFMDEIS GLDSSTT
Sbjct: 321 DYILKILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 380
Query: 332 FHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
F IV SLRQ IHIL GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP E VL+FFE M
Sbjct: 381 FQIVKSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELM 440
Query: 392 GFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELR 451
GFKCPERK VADFLQEVTSRKDQ+QYW+ + PYR++ V++F+ AFQSFH G+ + +EL
Sbjct: 441 GFKCPERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELA 500
Query: 452 TPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSST 511
TP DKSK+HPAALTT YGV EL KANI REFLL+KRNSFVYIF+ QL ++ ++ T
Sbjct: 501 TPFDKSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMT 560
Query: 512 LFFRANMNKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWA 571
+FFR M++DSV+DG I++GA+FF+V+M FNG+S++ +T+ KLP+F+KQR L F+PAW
Sbjct: 561 VFFRTKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWT 620
Query: 572 YALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAA 631
Y +P+WILKIP+SF+EV +VF++YY IGFDP+ GR FKQ LL+L INQMA+ALFRF+
Sbjct: 621 YTIPSWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGG 680
Query: 632 AGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGH 691
A RNMIVA FGSF L++F GGF+L ++ + WIWGYW SPMMYAQNAI NEF GH
Sbjct: 681 AARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGH 740
Query: 692 SWRKFTTN--STESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQF 749
SW K N S E+LGVQ L+SRG FP A WYWIG GA++GF++LFN FTL+LT+L +
Sbjct: 741 SWDKVLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPY 800
Query: 750 EKPQAVILEESESNYLDNRIGGTIQLSTYGSNSSHS------KNSGVVRATQPKKRGMVL 803
K Q + EE N G + + T S+++ + +S + +QP +RGMVL
Sbjct: 801 GKSQPSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVL 860
Query: 804 PFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 863
PF P SLTFD++ YS DMP+EMK G+ ED+L LL GVSG+FRPGVLTALMGVSGAGKTT
Sbjct: 861 PFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTT 920
Query: 864 LMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 923
LMDVLAGRKTGGYI GNITISGYPKKQETF R+SGYCEQNDIHSP VTV ESLL+SAWLR
Sbjct: 921 LMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLR 980
Query: 924 LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSII 983
L +VDS TRKMFIEE+MELVELKPLR +LVGLPG +GLSTEQRKRLTIAVELVANPSII
Sbjct: 981 LPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSII 1040
Query: 984 FMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043
FMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIY
Sbjct: 1041 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIY 1100
Query: 1044 VGPLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGI 1103
VGPLG SS+LI Y + I GV +IKDGYNPATWMLEV++ ++E ALG+
Sbjct: 1101 VGPLGHQSSELIKYFE------------GIKGVSRIKDGYNPATWMLEVSTISQEQALGV 1148
Query: 1104 DFTNIYKHSDLYRRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRN 1163
DF +IY+ S+L++RNKALI+ELS P P S ++YFPT YS SF Q LACLWK H SYWRN
Sbjct: 1149 DFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRN 1208
Query: 1164 PPYNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPV 1223
PPYNA+R FTT IAL FGT+FWD+G KT ++QDLFNAMGSMY+AV FIG SVQPV
Sbjct: 1209 PPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPV 1268
Query: 1224 VAVERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAK--- 1280
V+VERTV+YRE+ AGMYS YAF QV IE PY LV S++YG+IVY+MIGF+WTAAK
Sbjct: 1269 VSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFW 1328
Query: 1281 -----FFCLLYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
FF LYFTFYGMM V +TP++++A+IVS F+G+WN+FSGF+IPRP
Sbjct: 1329 YLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRP 1379
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1785 bits (4624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1355 (64%), Positives = 1067/1355 (78%), Gaps = 49/1355 (3%)
Query: 5 GSTSRSASP-RS-SSEGAFPRSPREEEEDDEKEALKWAAHEKLPS--------------- 47
GS RS S RS S+ F RS REE D++EALKWAA EKLP+
Sbjct: 17 GSLRRSVSAWRSPSTSDVFGRSSREE---DDEEALKWAALEKLPTYDRLRKGIMTGDGGE 73
Query: 48 --------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIE 99
LG QER+ L++KLV+ + DNE+F+LKLR R +RVGI+ P +EVR+EHLNI
Sbjct: 74 IQEVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNIN 133
Query: 100 AEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPP 159
AEAF+ ++ +PT +FF N +++H++ + K+ ++IL DVSGIIKP RMTLLLGPP
Sbjct: 134 AEAFVGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPP 193
Query: 160 SSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETL 219
+GKTTLLLALAG+LD++LKV+G VTYNGH M+EFVPQRT+AYISQHDVHIGEMTVRETL
Sbjct: 194 GAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETL 253
Query: 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG 279
AFS+RCQGVG+RY+MLTEL+RREKEA IKPD +DV+MKA A EGQE+ V+TDY LK+LG
Sbjct: 254 AFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILG 312
Query: 280 LDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLR 339
LD+CADT+VGD M+RGISGGQKKR+TTGEM+VGP+ ALFMDEIS GLDSSTTF IVNSLR
Sbjct: 313 LDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLR 372
Query: 340 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERK 399
Q++HIL GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGP E VL+FFESMGFKCPERK
Sbjct: 373 QSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERK 432
Query: 400 SVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKS 459
VADFLQEVTSRKDQ+QYWV PYRF+ V EFSEAF+SFHVG KL +EL TP D+S++
Sbjct: 433 GVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRN 492
Query: 460 HPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMN 519
HPAALTT YG+ EL KA I RE+LL+KRNSFVYIFK++QL +AL++ T+FFR +
Sbjct: 493 HPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLP 552
Query: 520 KDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWIL 579
++ + D I+ GAMF ++ FNG ++++M++AKLP+FYKQR L FYP WAYALP WIL
Sbjct: 553 RNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWIL 612
Query: 580 KIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVA 639
KIPISF+E +W+ +TYY IGFDPN+ R+F+ LLL+ I+Q+AS LFR +AA GR+M+VA
Sbjct: 613 KIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVA 672
Query: 640 MSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTN 699
+FG+FA +V GGF+++++ I WIWGYW SP+MYAQNAI NEF GHSW K
Sbjct: 673 DTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDA 732
Query: 700 STESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEE 759
+ ++LG + L++RG F WYWIG+GA+IG+++LFN F L L +L+ K Q + EE
Sbjct: 733 TGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEE 792
Query: 760 SESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSA 819
+ NR G ++L+T GS ++ S +R +K+GMVLPF P S+TFD+V YS
Sbjct: 793 ALQEKEANRTGANVELATRGSAATSDGGSVEIRKDGNRKKGMVLPFTPLSITFDNVKYSV 852
Query: 820 DMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG 879
DMP+EMK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTGGYI G
Sbjct: 853 DMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEG 912
Query: 880 NITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEE 939
+I ISGYPK QETF RISGYCEQNDIHSP VTVYESLLYSAWLRL EVD + RKMF++E
Sbjct: 913 DIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDE 972
Query: 940 IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
+M+LVEL LR SLVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 973 VMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1032
Query: 1000 VMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQ 1059
VMR V+NTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG SS LI Y +
Sbjct: 1033 VMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFE 1092
Query: 1060 LMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNK 1119
+I GV+KIK+ YNPATWMLEVT+ ++E LG++F +Y++SDLY+RNK
Sbjct: 1093 ------------SIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNK 1140
Query: 1120 ALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIAL 1179
LI+ELS P P S+D++F T +S+SF MQ LACLWKQH SYWRNP Y A R FT IAL
Sbjct: 1141 DLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIAL 1200
Query: 1180 TFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGM 1239
FGT+FWD+G K + DL NAMGSMY AV FIG Q +VQP+V VERTV+YREK AGM
Sbjct: 1201 IFGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGM 1260
Query: 1240 YSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKFF--------CLLYFTFYG 1291
YS + YA+AQV+IE+P++LV +++YG++VY+MIGF+WTAAKF LYFT+YG
Sbjct: 1261 YSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYG 1320
Query: 1292 MMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
MM VAMTPN +IAAIV+ F+ +WN+F+GF+IPRP
Sbjct: 1321 MMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRP 1355
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1326 | ||||||
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.971 | 0.903 | 0.704 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.980 | 0.911 | 0.694 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.981 | 0.910 | 0.701 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.975 | 0.411 | 0.709 | 0.0 | |
| 359482993 | 1430 | PREDICTED: pleiotropic drug resistance p | 0.981 | 0.910 | 0.705 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.976 | 0.788 | 0.693 | 0.0 | |
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.981 | 0.901 | 0.699 | 0.0 | |
| 359482989 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.978 | 0.910 | 0.705 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.978 | 0.907 | 0.696 | 0.0 | |
| 356555801 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.971 | 0.903 | 0.702 | 0.0 |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1981 bits (5131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 947/1344 (70%), Positives = 1111/1344 (82%), Gaps = 56/1344 (4%)
Query: 14 RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS-----------------------LGL 50
R+S AF RS R EE++DE EALKWAA EKLP+ LG
Sbjct: 22 RNSIMEAFSRSSRHEEDNDE-EALKWAALEKLPTYNRLRKGLLTTSRGVANEIDITELGF 80
Query: 51 QERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALP 110
QERQ+L+D+L+ V + DNE +LKL+ R DRVGI++P +EVRYEHLN+EAEA++ S+ALP
Sbjct: 81 QERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTIEVRYEHLNVEAEAYVGSRALP 140
Query: 111 TFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL 170
TF +F TN++E+FF S+HIL+ KKKH+TIL+DVSGIIKP RM LLLGPPSSGKTTLLLAL
Sbjct: 141 TFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIKPRRMALLLGPPSSGKTTLLLAL 200
Query: 171 AGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230
+G+LD +LKVSGRV YNGH+MNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG+
Sbjct: 201 SGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGT 260
Query: 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290
RYD+L+ELARREKEA IKPD IDV+MKAAAT GQEA+++TDY LK+LGLD+CADT++GD
Sbjct: 261 RYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASLVTDYVLKILGLDICADTMMGD 320
Query: 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
EM+RGISGGQ+KR+TTGEM+VGPA ALFMDEIS GLDSSTTF IV SLRQ +HILNGTAV
Sbjct: 321 EMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQYVHILNGTAV 380
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
ISLLQPAPETY+LFDDI+L+SDGQIVYQGP E VL+FFE +GF+CPERK VADFLQEVTS
Sbjct: 381 ISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFEYVGFQCPERKGVADFLQEVTS 440
Query: 411 RKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYG 470
RKDQ QYW+HR+ YRF+TV EF+EAFQSFHVG+++ +EL TP DKSKSHPAALTTK YG
Sbjct: 441 RKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEELATPFDKSKSHPAALTTKKYG 500
Query: 471 VGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530
V KEL KAN SRE+LL+KRNSFVYIFKL QL+ +A+++ T+F R M+++S++DGG+Y
Sbjct: 501 VNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILTMTMFLRTEMHRNSLNDGGVYT 560
Query: 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSI 590
GA+FFAV++ FNG+++ISMT+ KLPIFYKQR L FYP+WAYA+P+WILKIPI+F+E ++
Sbjct: 561 GALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPSWAYAIPSWILKIPITFIEAAV 620
Query: 591 WVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVF 650
WVFLTYY IGFDPN+GRL KQ L+LL INQM+S LFR IAA GRNMIVA +FGSFAL+V
Sbjct: 621 WVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAIAALGRNMIVASTFGSFALLVL 680
Query: 651 FAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLK 710
FA GGFVLS++DI N WIWGYW SP+MY QNAIV NEF G SW FT NS ++LG+Q+L+
Sbjct: 681 FALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFLGDSWNHFTPNSNKTLGIQILE 740
Query: 711 SRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIG 770
SRGFF HA+WYWIG+GA+IGF++LFNI +TL+LT+LN ++ PQ I EESES
Sbjct: 741 SRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPYDTPQTTITEESESGM------ 794
Query: 771 GTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGV 830
T G S + V+ ++ KKRGM+LPFEPYS+TFD + YS DMP EMK +GV
Sbjct: 795 ------TNGIAESAGRAIAVMSSSHKKKRGMILPFEPYSITFDQIVYSVDMPLEMKDQGV 848
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890
ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI +SGYPK+Q
Sbjct: 849 REDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNIKVSGYPKRQ 908
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
ETF RISGYCEQNDIHSP VTVYESL+YSAWLRL EV++ TRKMFIEE+MELVEL PLR
Sbjct: 909 ETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLPAEVEAYTRKMFIEEVMELVELNPLR 968
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
SLVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+T
Sbjct: 969 NSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1028
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFM 1070
GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG +SS +I Y +
Sbjct: 1029 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSQMIKYFE----------- 1077
Query: 1071 KAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPAP 1130
+I GV KIKDGYNPATWMLEVT+ +EL LG+DF IY++S L RRNK LI EL PAP
Sbjct: 1078 -SIEGVGKIKDGYNPATWMLEVTTPAQELNLGVDFHEIYRNSGLCRRNKRLISELGNPAP 1136
Query: 1131 DSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGT 1190
S+D++FPT Y +S +Q LACLWKQHWSYWRNPPY AVRFL TT A+ FGTMFWD+G
Sbjct: 1137 GSKDLHFPTQYPQSLLVQCLACLWKQHWSYWRNPPYTAVRFLSTTVTAVLFGTMFWDLGG 1196
Query: 1191 KTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQV 1250
K QDLFNAMGSMY AV F+G Q +SVQPVVA+ERTV+YRE+ AGMYS + YA AQV
Sbjct: 1197 KYSSRQDLFNAMGSMYNAVLFVGVQNSASVQPVVAIERTVFYRERAAGMYSALPYALAQV 1256
Query: 1251 MIEIPYVLVLSVVYGVIVYAMIGFEWTAAKF--------FCLLYFTFYGMMTVAMTPNHN 1302
+IE+PYV V + Y VIVYAM+GFEWT KF F L YFTFYGMMTVA+TPNH+
Sbjct: 1257 IIELPYVFVQATSYSVIVYAMMGFEWTLQKFFWYVFFMYFTLCYFTFYGMMTVAVTPNHH 1316
Query: 1303 IAAIVSILFFGLWNVFSGFVIPRP 1326
+A++V+ F+G+WN+FSGFVI RP
Sbjct: 1317 VASVVASAFYGIWNLFSGFVIARP 1340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1979 bits (5126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 943/1357 (69%), Positives = 1118/1357 (82%), Gaps = 57/1357 (4%)
Query: 2 ATDGSTSRSASP-RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS------------- 47
A++ SRS++ R+S AF RS REE D++EALKWAA EKLP+
Sbjct: 9 ASNSLRSRSSTVWRNSGVEAFSRSSREE---DDEEALKWAALEKLPTYNRLRKGLLTASH 65
Query: 48 ----------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLN 97
LG+QERQ+L+++LVKV + DNE+F+LKL+ R DRVG+++P +EVRYEHLN
Sbjct: 66 GVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVRYEHLN 125
Query: 98 IEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLG 157
IEAEAF+ S+ALP+F + TN++E FFN +H+ T+KKKH+TILKDVSGIIKP RMTLLLG
Sbjct: 126 IEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRRMTLLLG 185
Query: 158 PPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRE 217
PPSSGKTTLLLAL+G+LD +LKVSGRVTYNGH++NEFVPQRTAAYISQHD+HIGEMTVRE
Sbjct: 186 PPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGEMTVRE 245
Query: 218 TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKV 277
TLAFSARCQGVGSRYDML+EL+RREK A IKPD +DV+MKA ATEGQE+N++TDY LK+
Sbjct: 246 TLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVTDYTLKI 305
Query: 278 LGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNS 337
LGLD+CADT+VGDEM+RGISGGQ+KR+TTGEM+VGPA ALFMDEIS GLDSSTTF IV+S
Sbjct: 306 LGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVSS 365
Query: 338 LRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPE 397
LR +HILNGTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GP E VLDFFESMGF+CPE
Sbjct: 366 LRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGFRCPE 425
Query: 398 RKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKS 457
RK VADFLQEVTS+KDQ QYWV R+ PYRF+TV +F+EAFQSFH+G KL +EL P D++
Sbjct: 426 RKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELTVPFDRT 485
Query: 458 KSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRAN 517
KSHPAALTTK YG+ KEL KAN SRE+LL+KRNSFVY+FKL QL MALV+ TLF R
Sbjct: 486 KSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMTLFLRTE 545
Query: 518 MNKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAW 577
M+ +++ D G+Y GA+FF +I FNG+++ISMT+AKLP+FYKQR L FYP+WAYA+P+W
Sbjct: 546 MHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWAYAIPSW 605
Query: 578 ILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMI 637
ILKIP++ +EV++WVFLTYY IGFDPN+GR FKQ L+LL ++QMAS LFR IAA GRNMI
Sbjct: 606 ILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAALGRNMI 665
Query: 638 VAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFT 697
VA +FG+FA++ A GGF+LS+ DI + WIWGYW SP+MY QNA++ NEF +SW
Sbjct: 666 VANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSNSWH--- 722
Query: 698 TNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVIL 757
N+T +LGV+ L+SR FF ++WYW+GLGA++GFV LFN+ F L+L FL F+KPQA I
Sbjct: 723 -NATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDKPQATIT 781
Query: 758 EESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTY 817
E+ SN GT+ S + +V ++ KK+GMVLPFEP+S+TFD+V Y
Sbjct: 782 EDESSN------EGTLADIELPGIESSGRGDSLVESSHGKKKGMVLPFEPHSITFDEVVY 835
Query: 818 SADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 877
S DMP+EMK +GV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI
Sbjct: 836 SVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 895
Query: 878 SGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFI 937
G+I ISGYPKKQETF RISGYCEQNDIHSP VTVYESLLYSAWLRL + VDS+TRKMFI
Sbjct: 896 DGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSSVDSKTRKMFI 955
Query: 938 EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
EE+MELVEL P+R SLVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 956 EEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1015
Query: 998 AIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISY 1057
AIVMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG +SS LI Y
Sbjct: 1016 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIKY 1075
Query: 1058 LQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRR 1117
+ +I GV KIKDGYNPATWMLEVT+T +EL+LG+DFT++YK+SDLYRR
Sbjct: 1076 FE------------SIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRR 1123
Query: 1118 NKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAI 1177
NK LI+EL +PAP S+D++FPT YS+SF +Q ACLWKQ WSYWRNPPY AVRF FTT I
Sbjct: 1124 NKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFI 1183
Query: 1178 ALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGA 1237
AL FGT+FWD+G K DL NA+GSMYTAV F+G Q SSVQPVVA+ERTV+YREK A
Sbjct: 1184 ALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAA 1243
Query: 1238 GMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKF--------FCLLYFTF 1289
GMYS + YAFAQ+++E+PYV V +V YGVIVYAMIGFEWTA KF F LLY+TF
Sbjct: 1244 GMYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTF 1303
Query: 1290 YGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
YGMMTV +TPNH+IA+IV+ F+ +WN+FSGFV+ RP
Sbjct: 1304 YGMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRP 1340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1970 bits (5104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 950/1355 (70%), Positives = 1109/1355 (81%), Gaps = 54/1355 (3%)
Query: 5 GSTSRSASP--RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS--------------- 47
GS R S RS++ F +S R +E+DDE EALKWAA E+LP+
Sbjct: 11 GSLRRGESSIWRSNAMEGFSKSSRGDEDDDE-EALKWAAIERLPTYDRLKKGLLTTSKGE 69
Query: 48 --------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIE 99
LG E++ L+D+LVKV + DNE F+LKL+ R DRVGIELP +EVR+EHLN+E
Sbjct: 70 ANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMIEVRFEHLNVE 129
Query: 100 AEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPP 159
EA + S+ALPTF +F +I+E F N +HIL + KK L+IL+DVSGIIKP RMTLLLGPP
Sbjct: 130 TEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKPKRMTLLLGPP 189
Query: 160 SSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETL 219
SSGKTTLLLALAG+LD LK SGRVTYNGH+MNEFVPQRTAAYISQHD HIGEMTVRETL
Sbjct: 190 SSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHIGEMTVRETL 249
Query: 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG 279
AF+ARCQGVG RY+M++EL RREK + IKPD IDVFMKA ATEGQEANV+TDY LK+LG
Sbjct: 250 AFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVTDYILKILG 309
Query: 280 LDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLR 339
L+VCAD +VG+EM+RG+SGGQ+KR+TTGEM+VGPA ALFMDEIS GLDSSTT+ IVNS++
Sbjct: 310 LEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSIK 369
Query: 340 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERK 399
Q IHILNGTAVISLLQP PETY+LFDDIILLSDGQIVYQGP E VL+FFE MGFKCPERK
Sbjct: 370 QYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERK 429
Query: 400 SVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKS 459
VADFLQEVTSRKDQ QYW ++ PY F+TV+EF+EAFQSF VG++L EL TP DKSKS
Sbjct: 430 GVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELSTPFDKSKS 489
Query: 460 HPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMN 519
HPAALTTK YGVG EL KA SRE LL+KRNSFVYIFKL QL+ MA+V+ TLF R M+
Sbjct: 490 HPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMTLFLRTEMH 549
Query: 520 KDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWIL 579
+DSV++GGIY+GA+FF+V+ FNG+S+IS+T+AKLP+FYKQR L FYP WA++LP WI
Sbjct: 550 RDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWAFSLPPWIT 609
Query: 580 KIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVA 639
KIPI+ ++V+IWVFLTYY IGFDPN+GR FKQ LLL ++QMAS LFRFIAAAGRNMIVA
Sbjct: 610 KIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAAAGRNMIVA 669
Query: 640 MSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTN 699
+FGSFAL+ FA GGF+LS+D+I WIWGYW SP+MY QNAIV NEF G+SW K +
Sbjct: 670 NTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGNSWNKVLPD 729
Query: 700 STESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEE 759
+TE+LG+QVL+SRGFF HA+WYWIG+GA++GF LL+N FTL+LTFL +KPQAVI E+
Sbjct: 730 TTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQKPQAVISED 789
Query: 760 SESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSA 819
S SN + G IQLS+ + +V K++GMVLPFEP+S+TF+D+ YS
Sbjct: 790 SASN-TSGKTGEVIQLSSV-------RTELIVEENHQKQKGMVLPFEPHSITFNDIRYSV 841
Query: 820 DMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG 879
DMP+EMK +G ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G
Sbjct: 842 DMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG 901
Query: 880 NITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEE 939
+I ISG+PKKQETF RISGYCEQNDIHSP VTVYESLLYS+WLRL EV+SETRKMFIEE
Sbjct: 902 DIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLPPEVNSETRKMFIEE 961
Query: 940 IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
+MELVEL PLRQ+LVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 962 VMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1021
Query: 1000 VMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQ 1059
VMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEIYVGPLG +S LI Y +
Sbjct: 1022 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSCQLIKYFE 1081
Query: 1060 LMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNK 1119
AI GV IKDGYNPATWMLEV+S+ +E+ LG+DF IYK+S+LYRRNK
Sbjct: 1082 ------------AIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNSELYRRNK 1129
Query: 1120 ALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIAL 1179
ALIEELS P S D+YFPT YS+SFF Q +ACLWKQHWSYWRNPPY AVRFLFTT IAL
Sbjct: 1130 ALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTVIAL 1189
Query: 1180 TFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGM 1239
FGTMFWD+G+KT + QDLFNAMGSMY A+ F+G Q SSVQPVVAVERTV+YRE+ AGM
Sbjct: 1190 MFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFYRERAAGM 1249
Query: 1240 YSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKF--------FCLLYFTFYG 1291
YS + YAFAQV+IE+PY+ + + VYG+IVYAMIGFEW+AAKF F LL++T+YG
Sbjct: 1250 YSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTLLFYTYYG 1309
Query: 1292 MMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
MM VA+TPN +A+IVS F+ +WN+FSGF+IPRP
Sbjct: 1310 MMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRP 1344
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1966 bits (5093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 968/1365 (70%), Positives = 1114/1365 (81%), Gaps = 72/1365 (5%)
Query: 14 RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS-----------------------LGL 50
R+S E F RS R+E D++EALKWAA EKLP+ LG
Sbjct: 1710 RNSGEEVFSRSSRDE---DDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNLGF 1766
Query: 51 QERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALP 110
QE++ L+++LVK+ + DNEKF+LKLR R DRVGI+LP++EVR+EHL I+AEA + S+ALP
Sbjct: 1767 QEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRALP 1826
Query: 111 TFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL 170
+F N IE N++ IL ++KK LTIL DVSGIIKP RMTLLLGPPSSGKTTLLLAL
Sbjct: 1827 SFIYSAFNQIEDILNTLRILPSRKKKLTILHDVSGIIKPRRMTLLLGPPSSGKTTLLLAL 1886
Query: 171 AGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230
+G+LDSSLKV+G+VTYNGH MNEFVPQRTA YISQHD HIGEMTVRETLAFSARCQGVG
Sbjct: 1887 SGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGVGD 1946
Query: 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290
RYDML EL+RREK A IKPD IDVFMKA ATEGQ+ NV+TDY LK+LGL+VCADTLVGD
Sbjct: 1947 RYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVCADTLVGD 2006
Query: 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
+M+RGISGGQ+KR+TTGEM+VGP+ ALFMDEIS GLDSSTT+ IVNSLRQ IHILNGTA+
Sbjct: 2007 QMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTAL 2066
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
ISLLQPAPETYDLFDDIILLSD QIVYQGP E VLDFFESMGF+CPERK VADFLQEVTS
Sbjct: 2067 ISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTS 2126
Query: 411 RKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYG 470
RKDQ+QYW ++ PY F+TV+EF+EAFQSFH+G+KL EL TP DK+KSHPAAL T+ YG
Sbjct: 2127 RKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYG 2186
Query: 471 VGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530
V KEL A ISRE+LL+KRNSFVYIFKL QL MA +S T+F R M+K+S DG IY
Sbjct: 2187 VRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYT 2246
Query: 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSI 590
GA+FF V+M FNGMS+++MT+AKLP+FYKQRGL FYPAWAYALP+WILKIPI+F+EV++
Sbjct: 2247 GALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAV 2306
Query: 591 WVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVF 650
WVF++YY IGFDPN+GRLFKQ LLL+ +NQMASALFRFIAAAGRNMIVA +FGSF+L++
Sbjct: 2307 WVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLL 2366
Query: 651 FAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRK-FTTNSTESLGVQVL 709
FA GGFVLS++++ WIWGYW SP+MYAQNAIV NEF G SW K +T+STESLGV VL
Sbjct: 2367 FALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVL 2426
Query: 710 KSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRI 769
KSRGFF A+WYWIG GA++GF+L+FN +T++LT+LN FEKPQAVI EESE +++
Sbjct: 2427 KSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE----NSKT 2482
Query: 770 GGTIQLSTYGSNSSHSKNS---------------------GVVRATQPKKRGMVLPFEPY 808
GG I+LS++ S S + A + K+GMVLPF+P
Sbjct: 2483 GGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPL 2542
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
S+TFDD+ YS DMP+EMK +GV ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 2543 SITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 2602
Query: 869 AGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEV 928
AGRKTGGYI GNI ISGYPKKQETF RISGYCEQNDIHSP VT++ESLLYSAWLRL +V
Sbjct: 2603 AGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRLPADV 2662
Query: 929 DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988
DS+TRKMFIEE+MELVEL PL+ SLVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 2663 DSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 2722
Query: 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048
TSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVGPLG
Sbjct: 2723 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLG 2782
Query: 1049 SNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNI 1108
+SS LI Y Q I GV KIKDGYNPATWMLEVTS+ +E LG+DFT I
Sbjct: 2783 RHSSHLIKYFQ------------GIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEI 2830
Query: 1109 YKHSDLYRRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNA 1168
YK+SDLYRRNK LI+ELS+PAP S+D+YFPT YS+SFF Q +ACLWKQ SYWRNPPY A
Sbjct: 2831 YKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTA 2890
Query: 1169 VRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVER 1228
VRF FTT IAL FGTMFWD+GTK K+ QDL NAMGSMY AV F+G Q SSVQPVVAVER
Sbjct: 2891 VRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVER 2950
Query: 1229 TVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAK-------- 1280
TV+YRE+ AGMYS M YAFAQ ++EIPYV +VVYGVIVYAMIGFEWTAAK
Sbjct: 2951 TVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFM 3010
Query: 1281 FFCLLYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPR 1325
FF LLYFTFYGMM VA TPN +IAAIV+ F+GLWN+FSGF++PR
Sbjct: 3011 FFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPR 3055
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482993|ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance protein 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1965 bits (5090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1353 (70%), Positives = 1108/1353 (81%), Gaps = 51/1353 (3%)
Query: 5 GSTSRSASP-RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS---------------- 47
GS R+ S RSS F RS R+E D++EALKWAA EKLP+
Sbjct: 11 GSLRRNGSMWRSSGADVFSRSSRDE---DDEEALKWAALEKLPTYNRLRKGLLMGSQGAA 67
Query: 48 -------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEA 100
LG QE+Q L+++LVK+ + DNEKF+L+LR R +RVGI +P++EVR+EHL I+A
Sbjct: 68 SEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLTIDA 127
Query: 101 EAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPS 160
EAF+ S+ALP+F +F N IE + IL ++++ TIL DVSGIIKP RMTLLLGPPS
Sbjct: 128 EAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLGPPS 187
Query: 161 SGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220
SGKTTLLLAL+G+LD +LKV+GRVTYNGH M+EFVPQRTAAYISQHD HIGEMTVRETLA
Sbjct: 188 SGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRETLA 247
Query: 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL 280
FSARCQGVG RYDML EL+RREK A IKPD +DVFMKAAATEGQ+ NV+TDY LK+LGL
Sbjct: 248 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 307
Query: 281 DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQ 340
D+CADT+VGDEM+RGISGGQ+KR+TTGEM+VGP+ ALFMDEIS GLDSSTTF IVN L+Q
Sbjct: 308 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNCLKQ 367
Query: 341 NIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKS 400
IHILNGTAVISLLQPAPETY+LFDDIILLSDG+I+YQGP E VL+FFES GF+CPERK
Sbjct: 368 TIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPERKG 427
Query: 401 VADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSH 460
VADFLQEVTS+KDQ+QYW +E PYRF+TV+EF+EAFQSFH G+K+ DEL +P DK+KSH
Sbjct: 428 VADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKTKSH 487
Query: 461 PAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNK 520
PAALTTK YGV KEL AN+SRE+LL+KRNSFVY+FKL QL+ MA+++ TLF R M+K
Sbjct: 488 PAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTEMHK 547
Query: 521 DSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILK 580
+SV DG IY GA+FF V+M FNGM++++M +AKLP+FYKQR L FYPAWAYALP WILK
Sbjct: 548 NSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTWILK 607
Query: 581 IPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAM 640
IPI+F+EV +WVF+TYY IGFDPN+ RLF+Q LLLL +NQMAS LFR IA+AGRNMIV+
Sbjct: 608 IPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMIVSN 667
Query: 641 SFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNS 700
+FG+F L++ A GGF+LS DD+ WIWGYWCSP+MYAQNAIV NEF GHSW+K T S
Sbjct: 668 TFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNVTGS 727
Query: 701 TESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEES 760
TESLGV VL +RGFF A+WYWIG GA+ GF+LLFN G+TL L FLN F+KPQAVI+EES
Sbjct: 728 TESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIVEES 787
Query: 761 ESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSAD 820
+ + GG I+LS S+ + ++ V A KK+GMVLPF+PYS+TFDD+ YS D
Sbjct: 788 D----NAETGGQIELSQRNSSIDQAASTAVAGANHNKKKGMVLPFQPYSITFDDIRYSVD 843
Query: 821 MPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGN 880
MP+EMK +GV EDKL LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GN
Sbjct: 844 MPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGN 903
Query: 881 ITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEI 940
ITISGYPKKQETF RISGYCEQNDIHSP VTVYESLLYSAWLRL ++V SETR+MFIEE+
Sbjct: 904 ITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSDVKSETRQMFIEEV 963
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
MELVEL PLR +LVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 964 MELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1023
Query: 1001 MRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQL 1060
MRTV+NTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVGPLG S LI+Y +
Sbjct: 1024 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRYSCHLINYFE- 1082
Query: 1061 MPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKA 1120
I GV KIKDGYNPATWMLE T+ +E LG+DFT IYK+SDLYRRNK
Sbjct: 1083 -----------GIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYKNSDLYRRNKD 1131
Query: 1121 LIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALT 1180
LI+ELS+P P ++D+YF T +S+ FF QFLACLWKQ WSYWRNPPY AVRFLFTT IAL
Sbjct: 1132 LIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALM 1191
Query: 1181 FGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMY 1240
FGTMFWD+GTK QDLFNAMGSMY AV F+G Q SVQPVV VERTV+YRE+ AGMY
Sbjct: 1192 FGTMFWDLGTKWSTQQDLFNAMGSMYAAVLFLGIQNSQSVQPVVVVERTVFYRERAAGMY 1251
Query: 1241 SGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAK--------FFCLLYFTFYGM 1292
S +SYAFAQV IEIPY+ +VVYG+IVYAMIGF+WTAAK FF L+YFTFYGM
Sbjct: 1252 SPLSYAFAQVTIEIPYIFSQAVVYGLIVYAMIGFQWTAAKFFWYLFFMFFTLMYFTFYGM 1311
Query: 1293 MTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPR 1325
M VA TPN NIA+IV+ F+GLWN+FSGF++PR
Sbjct: 1312 MAVAATPNQNIASIVAAAFYGLWNLFSGFIVPR 1344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1960 bits (5077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 942/1358 (69%), Positives = 1098/1358 (80%), Gaps = 63/1358 (4%)
Query: 1 MATDGSTSRSASP--RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS----------- 47
+ GS R+ S RSS F RS R+E D++EALKWAA EKLP+
Sbjct: 228 LQASGSLRRNGSSIWRSSGADVFSRSSRDE---DDEEALKWAALEKLPTYNRLRRGLLMG 284
Query: 48 ------------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEH 95
LG QE++ L+++LVKV + DNEKF+LKL+ R DRVGI++P++EVR+EH
Sbjct: 285 SEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEH 344
Query: 96 LNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLL 155
L I+AEAF+ S+ALP+F +F N +E N++ IL +KK+ TIL DVSGIIKP R+TLL
Sbjct: 345 LTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLL 404
Query: 156 LGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215
LGPPSSGKTTLLLALAG+LD +LKV GRVTYNGH MNEFVPQRTAAYISQHD HIGEMTV
Sbjct: 405 LGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTV 464
Query: 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYL 275
RETLAFSARCQGVG RYDML EL+RREK A IKPD +DVFMKAAATEGQ+ NV+TDY L
Sbjct: 465 RETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTL 524
Query: 276 KVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIV 335
K+LGLD+CADT+VGDEM+RGISGGQ+KR+TTGEM+VGP+ ALFMDEIS GLDSSTTF I+
Sbjct: 525 KILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQII 584
Query: 336 NSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKC 395
NSL+Q IHILNGTAVISLLQPAPETY+LFDDIILLSD QIVYQGP E VL+FFES+GFKC
Sbjct: 585 NSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKC 644
Query: 396 PERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLD 455
PERK ADFLQEVTSRKDQ QYW +++PY F+TV+EF+EAFQSFH+G+K+ DEL +P D
Sbjct: 645 PERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFD 704
Query: 456 KSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFR 515
++KSHPAALTTK YGV KEL AN+SRE+LL+KRNSFVYIFKL QL+ +A+++ TLF R
Sbjct: 705 RAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLR 764
Query: 516 ANMNKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALP 575
MNK+S DG IY GA+FF V+M FNGM++++MT+AKLP+FYKQR FYPAWAYALP
Sbjct: 765 TEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALP 824
Query: 576 AWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRN 635
W+LKIPI+F+EV++WVF+TYY IGFDPN+ RLF+Q LLLL +NQMAS LFRFIAAAGRN
Sbjct: 825 TWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRN 884
Query: 636 MIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRK 695
MIVA +FG+FA+++ A GGF+LS D++ WIWGYW SP+MYAQNAIV NEF G SW K
Sbjct: 885 MIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSK 944
Query: 696 FTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAV 755
TNSTESLG+ VLKSRGFF A WYWIG GA++GF+ +FN +TL L +LN FEKPQAV
Sbjct: 945 NVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAV 1004
Query: 756 ILEESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDV 815
I EES DN T + + KK+GMVLPF+P+S+TFDD+
Sbjct: 1005 ITEES-----DNAKTATTEHMV----------EAIAEGNHNKKKGMVLPFQPHSITFDDI 1049
Query: 816 TYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 875
YS DMP+EMK +G ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG
Sbjct: 1050 RYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 1109
Query: 876 YISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
YI GNI+ISGYPKKQETF RISGYCEQNDIHSP VTV+ESLLYSAWLRL ++V+SETRKM
Sbjct: 1110 YIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSETRKM 1169
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
FIEE+MELVEL PLR +LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 1170 FIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1229
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLI 1055
AAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEIYVGPLG +SS LI
Sbjct: 1230 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSSHLI 1289
Query: 1056 SYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLY 1115
+Y + I GV KIKDGYNPATWMLEVT+ +E LG+DFT IYK+SDLY
Sbjct: 1290 NYFE------------GIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLY 1337
Query: 1116 RRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTT 1175
RRNK LI+ELS+PAP ++D+YF T YS+ FF QFLACLWKQ WSYWRNPPY AVRFLFTT
Sbjct: 1338 RRNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTT 1397
Query: 1176 AIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREK 1235
IAL FG +FWD+GT+ + QDL NAMGSMY AV F+G Q SVQPV+ VERTV+YRE+
Sbjct: 1398 FIALMFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRER 1457
Query: 1236 GAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKF-------FC-LLYF 1287
AGMYS + YAF Q ++EIPYV +VVYGVIVY MIGFEWTA KF FC LLYF
Sbjct: 1458 AAGMYSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYF 1517
Query: 1288 TFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPR 1325
TFYGMM VA TPN +IA+I++ F+ LWN+FSGF++PR
Sbjct: 1518 TFYGMMAVAATPNQHIASIIAATFYTLWNLFSGFIVPR 1555
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1958 bits (5073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1368 (69%), Positives = 1108/1368 (80%), Gaps = 66/1368 (4%)
Query: 5 GSTSRSASP-RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS---------------- 47
GS R+ S RSS F RS R+E D++EALKWAA EKLP+
Sbjct: 11 GSLRRNGSMWRSSGADVFSRSSRDE---DDEEALKWAALEKLPTYNRLRKGLLMGSQGAA 67
Query: 48 -------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEA 100
LG QE+Q L+++LVK+ + DNEKF+L+LR R +RVGI +P++EVR+EHL I+A
Sbjct: 68 SEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLTIDA 127
Query: 101 EAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPS 160
EAF+ S+ALP+F +F N IE + IL ++++ TIL DVSGIIKP RMTLLLGPPS
Sbjct: 128 EAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLGPPS 187
Query: 161 SGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220
SGKTTLLLAL+G+LD +LKV+GRVTYNGH M+EFVPQRTAAYISQHD HIGEMTVRETLA
Sbjct: 188 SGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRETLA 247
Query: 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL 280
FSARCQGVG RYDML EL+RREK A IKPD +DVFMKAAATEGQ+ NV+TDY LK+LGL
Sbjct: 248 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 307
Query: 281 DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQ 340
D+CADT+VGDEM+RGISGGQ+KR+TTGEM+VGP+ ALFMDEIS GLDSSTTF IVN L+Q
Sbjct: 308 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNCLKQ 367
Query: 341 NIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKS 400
IHILNGTAVISLLQPAPETY+LFDDIILLSDG+I+YQGP E VL+FFES GF+CPERK
Sbjct: 368 TIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPERKG 427
Query: 401 VADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSH 460
VADFLQEVTS+KDQ+QYW +E PYRF+TV+EF+EAFQSFH G+K+ DEL +P DK+KSH
Sbjct: 428 VADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKTKSH 487
Query: 461 PAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNK 520
PAALTTK YGV KEL AN+SRE+LL+KRNSFVY+FKL QL+ MA+++ TLF R M+K
Sbjct: 488 PAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTEMHK 547
Query: 521 DSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILK 580
+SV DG IY GA+FF V+M FNGM++++M +AKLP+FYKQR L FYPAWAYALP WILK
Sbjct: 548 NSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTWILK 607
Query: 581 IPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAM 640
IPI+F+EV +WVF+TYY IGFDPN+ RLF+Q LLLL +NQMAS LFR IA+AGRNMIV+
Sbjct: 608 IPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMIVSN 667
Query: 641 SFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNS 700
+FG+F L++ A GGF+LS DD+ WIWGYWCSP+MYAQNAIV NEF GHSW+K T S
Sbjct: 668 TFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNVTGS 727
Query: 701 TESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEES 760
TESLGV VL +RGFF A+WYWIG GA+ GF+LLFN G+TL L FLN F+KPQAVI+EES
Sbjct: 728 TESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIVEES 787
Query: 761 ESNYLDNRIGGTIQLS---------------TYGSNSSHSKNSGVVRATQPKKRGMVLPF 805
+ + GG I+LS + S SS + V A KK+GMVLPF
Sbjct: 788 D----NAETGGQIELSQRNSSIDQRGEEIGRSISSTSSAVREEAVAGANHNKKKGMVLPF 843
Query: 806 EPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 865
+PYS+TFDD+ YS DMP+EMK +GV EDKL LL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 844 QPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLM 903
Query: 866 DVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925
DVLAGRKTGGYI GNITISGYPKKQETF RISGYCEQNDIHSP VTVYESLLYSAWLRL
Sbjct: 904 DVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLP 963
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985
++V SETR+MFIEE+MELVEL PLR +LVGLPG SGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 964 SDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1023
Query: 986 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
DEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVG
Sbjct: 1024 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVG 1083
Query: 1046 PLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDF 1105
PLG S LI+Y + I GV KIKDGYNPATWMLE T+ +E LG+DF
Sbjct: 1084 PLGRYSCHLINYFE------------GIEGVSKIKDGYNPATWMLEATTAAQEATLGVDF 1131
Query: 1106 TNIYKHSDLYRRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPP 1165
T IYK+SDLYRRNK LI+ELS+P P ++D+YF T +S+ FF QFLACLWKQ WSYWRNPP
Sbjct: 1132 TEIYKNSDLYRRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPP 1191
Query: 1166 YNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVA 1225
Y AVRFLFTT IAL FGTMFWD+GTK QDLFNAMGSMY AV F+G Q SVQPVV
Sbjct: 1192 YTAVRFLFTTFIALMFGTMFWDLGTKWSTQQDLFNAMGSMYAAVLFLGIQNSQSVQPVVV 1251
Query: 1226 VERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAK----- 1280
VERTV+YRE+ AGMYS +SYAFAQV IEIPY+ +VVYG+IVYAMIGF+WTAAK
Sbjct: 1252 VERTVFYRERAAGMYSPLSYAFAQVTIEIPYIFSQAVVYGLIVYAMIGFQWTAAKFFWYL 1311
Query: 1281 ---FFCLLYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPR 1325
FF L+YFTFYGMM VA TPN NIA+IV+ F+GLWN+FSGF++PR
Sbjct: 1312 FFMFFTLMYFTFYGMMAVAATPNQNIASIVAAAFYGLWNLFSGFIVPR 1359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482989|ref|XP_003632875.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1958 bits (5072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 954/1353 (70%), Positives = 1105/1353 (81%), Gaps = 55/1353 (4%)
Query: 5 GSTSRSASP-RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS---------------- 47
GS R+ S RSS F RS R+E D++EALKWAA EKLP+
Sbjct: 11 GSLRRNGSMWRSSGADVFSRSSRDE---DDEEALKWAALEKLPTYNRLRKGLLMGSQGAA 67
Query: 48 -------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEA 100
LG QE+Q L+++LVK+ + DNEKF+L+LR R +RVGI +P++EVR+EHL I+A
Sbjct: 68 SEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLTIDA 127
Query: 101 EAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPS 160
EAF+ S+ALP+F +F N IE + IL ++++ TIL DVSGIIKP RMTLLLGPPS
Sbjct: 128 EAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLGPPS 187
Query: 161 SGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220
SGKTTLLLAL+G+LD +LKV+GRVTYNGH M+EFVPQRTAAYISQHD HIGEMTVRETLA
Sbjct: 188 SGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRETLA 247
Query: 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL 280
FSARCQGVG RYDML EL+RREK A IKPD +DVFMKAAATEGQ+ NV+TDY LK+LGL
Sbjct: 248 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 307
Query: 281 DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQ 340
D+CADT+VGDEM+RGISGGQ+KR+TTGEM+VGP+ ALFMDEIS GLDSSTTF IVN L+Q
Sbjct: 308 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNCLKQ 367
Query: 341 NIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKS 400
IHILNGTAVISLLQPAPETY+LFDDIILLSDG+I+YQGP E VL+FFES GF+CPERK
Sbjct: 368 TIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPERKG 427
Query: 401 VADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSH 460
VADFLQEVTS+KDQ+QYW +E PYRF+TV+EF+EAFQSFH G+K+ DEL +P DK+KSH
Sbjct: 428 VADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKTKSH 487
Query: 461 PAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNK 520
PAALTTK YGV KEL AN+SRE+LL+KRNSFVY+FKL QL+ MA+++ TLF R M+K
Sbjct: 488 PAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTEMHK 547
Query: 521 DSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILK 580
+SV DG IY GA+FF V+M FNGM++++M +AKLP+FYKQR L FYPAWAYALP WILK
Sbjct: 548 NSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTWILK 607
Query: 581 IPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAM 640
IPI+F+EV +WVF+TYY IGFDPN+ RLF+Q LLLL +NQMAS LFR IA+AGRNMIV+
Sbjct: 608 IPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMIVSN 667
Query: 641 SFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNS 700
+FG+F L++ A GGF+LS DD+ WIWGYWCSP+MYAQNAIV NEF GHSW+K T S
Sbjct: 668 TFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNVTGS 727
Query: 701 TESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEES 760
TESLGV VL +RGFF A+WYWIG GA+ GF+LLFN G+TL L FLN F+KPQAVI+EES
Sbjct: 728 TESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIVEES 787
Query: 761 ESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSAD 820
+ + GG I+L S + + V A KK+GMVLPF+PYS+TFDD+ YS D
Sbjct: 788 D----NAETGGQIEL----SQRNTVREEAVAGANHNKKKGMVLPFQPYSITFDDIRYSVD 839
Query: 821 MPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGN 880
MP+EMK +GV EDKL LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GN
Sbjct: 840 MPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGN 899
Query: 881 ITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEI 940
ITISGYPKKQETF RISGYCEQNDIHSP VTVYESLLYSAWLRL ++V SETR+MFIEE+
Sbjct: 900 ITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSDVKSETRQMFIEEV 959
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
MELVEL PLR +LVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 960 MELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
Query: 1001 MRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQL 1060
MRTV+NTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGGQEIYVGPLG S LI+Y +
Sbjct: 1020 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRYSCHLINYFE- 1078
Query: 1061 MPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKA 1120
I GV KIKDGYNPATWMLE T+ +E LG+DFT IYK+SDLYRRNK
Sbjct: 1079 -----------GIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEIYKNSDLYRRNKD 1127
Query: 1121 LIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALT 1180
LI+ELS+P P ++D+YF T +S+ FF QFLACLWKQ WSYWRNPPY AVRFLFTT IAL
Sbjct: 1128 LIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALM 1187
Query: 1181 FGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMY 1240
FGTMFWD+GTK QDLFNAMGSMY AV F+G Q SVQPVV VERTV+YRE+ AGMY
Sbjct: 1188 FGTMFWDLGTKWSTQQDLFNAMGSMYAAVLFLGIQNSQSVQPVVVVERTVFYRERAAGMY 1247
Query: 1241 SGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAK--------FFCLLYFTFYGM 1292
S +SYAFAQV IEIPY+ +VVYG+IVYAMIGF+WTAAK FF L+YFTFYGM
Sbjct: 1248 SPLSYAFAQVTIEIPYIFSQAVVYGLIVYAMIGFQWTAAKFFWYLFFMFFTLMYFTFYGM 1307
Query: 1293 MTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPR 1325
M VA TPN NIA+IV+ F+GLWN+FSGF++PR
Sbjct: 1308 MAVAATPNQNIASIVAAAFYGLWNLFSGFIVPR 1340
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1957 bits (5070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 944/1356 (69%), Positives = 1102/1356 (81%), Gaps = 59/1356 (4%)
Query: 5 GSTSRSASP--RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS--------------- 47
GS R+ S RSS F RS R+E D++EALKWAA EKLP+
Sbjct: 11 GSLRRNGSSIWRSSGADVFSRSSRDE---DDEEALKWAALEKLPTYNRLRRGLLMGSEGE 67
Query: 48 --------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIE 99
LG QE++ L+++LVKV + DNEKF+LKL+ R DRVGI++P++EVR+EHL I+
Sbjct: 68 ASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTID 127
Query: 100 AEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPP 159
AEAF+ S+ALP+F +F N +E N++ IL +KK+ TIL DVSGIIKP R+TLLLGPP
Sbjct: 128 AEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLGPP 187
Query: 160 SSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETL 219
SSGKTTLLLALAG+LD +LKV GRVTYNGH MNEFVPQRTAAYISQHD HIGEMTVRETL
Sbjct: 188 SSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRETL 247
Query: 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG 279
AFSARCQGVG RYDML EL+RREK A IKPD +DVFMKAAATEGQ+ NV+TDY LK+LG
Sbjct: 248 AFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILG 307
Query: 280 LDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLR 339
LD+CADT+VGDEM+RGISGGQ+KR+TTGEM+VGP+ ALFMDEIS GLDSSTTF I+NSL+
Sbjct: 308 LDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINSLK 367
Query: 340 QNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERK 399
Q IHILNGTAVISLLQPAPETY+LFDDIILLSD QIVYQGP E VL+FFES+GFKCPERK
Sbjct: 368 QTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPERK 427
Query: 400 SVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKS 459
ADFLQEVTSRKDQ QYW +++PY F+TV+EF+EAFQSFH+G+K+ DEL +P D++KS
Sbjct: 428 GEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRAKS 487
Query: 460 HPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMN 519
HPAALTTK YGV KEL AN+SRE+LL+KRNSFVYIFKL QL+ +A+++ TLF R MN
Sbjct: 488 HPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTEMN 547
Query: 520 KDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWIL 579
K+S DG IY GA+FF V+M FNGM++++MT+AKLP+FYKQR FYPAWAYALP W+L
Sbjct: 548 KNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTWVL 607
Query: 580 KIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVA 639
KIPI+F+EV++WVF+TYY IGFDPN+ RLF+Q LLLL +NQMAS LFRFIAAAGRNMIVA
Sbjct: 608 KIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMIVA 667
Query: 640 MSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTN 699
+FG+FA+++ A GGF+LS D++ WIWGYW SP+MYAQNAIV NEF G SW K TN
Sbjct: 668 STFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNVTN 727
Query: 700 STESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEE 759
STESLG+ VLKSRGFF A WYWIG GA++GF+ +FN +TL L +LN FEKPQAVI EE
Sbjct: 728 STESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVITEE 787
Query: 760 SESNYLDNRIGGTI--QLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTY 817
S DN T + T+G + + + KK+GMVLPF+P+S+TFDD+ Y
Sbjct: 788 S-----DNAKTATTGDETHTWGEHMVEA----IAEGNHNKKKGMVLPFQPHSITFDDIRY 838
Query: 818 SADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 877
S DMP+EMK +G ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI
Sbjct: 839 SVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 898
Query: 878 SGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFI 937
GNI+ISGYPKKQETF RISGYCEQNDIHSP VTV+ESLLYSAWLRL ++V+SETRKMFI
Sbjct: 899 EGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSETRKMFI 958
Query: 938 EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
EE+MELVEL PLR +LVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 959 EEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1018
Query: 998 AIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISY 1057
AIVMRTV+NTV+TGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEIYVGPLG +SS LI+Y
Sbjct: 1019 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSSHLINY 1078
Query: 1058 LQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRR 1117
+ I GV KIKDGYNPATWMLEVT+ +E LG+DFT IYK+SDLYRR
Sbjct: 1079 FE------------GIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRR 1126
Query: 1118 NKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAI 1177
NK LI+ELS+PAP ++D+YF T YS+ FF QFLACLWKQ WSYWRNPPY AVRFLFTT I
Sbjct: 1127 NKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFI 1186
Query: 1178 ALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGA 1237
AL FG +FWD+GT+ + QDL NAMGSMY AV F+G Q SVQPV+ VERTV+YRE+ A
Sbjct: 1187 ALMFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAA 1246
Query: 1238 GMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKF-------FC-LLYFTF 1289
GMYS + YAF Q ++EIPYV +VVYGVIVY MIGFEWTA KF FC LLYFTF
Sbjct: 1247 GMYSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTF 1306
Query: 1290 YGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPR 1325
YGMM VA TPN +IA+I++ F+ LWN+FSGF++PR
Sbjct: 1307 YGMMAVAATPNQHIASIIAATFYTLWNLFSGFIVPR 1342
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555801|ref|XP_003546218.1| PREDICTED: pleiotropic drug resistance protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1953 bits (5059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 944/1344 (70%), Positives = 1110/1344 (82%), Gaps = 56/1344 (4%)
Query: 14 RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPS-----------------------LGL 50
R+S F RS REE D++EALKWAA EKLP+ LG+
Sbjct: 21 RNSGVEVFSRSSREE---DDEEALKWAALEKLPTYNRLRKGLLTASHGVANEIDVSDLGI 77
Query: 51 QERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALP 110
QERQ+L+++LVKV + DNE+F+LKL+ R DRVG+++P +EVRYEHLNIEAEAF+ S+ALP
Sbjct: 78 QERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVRYEHLNIEAEAFVGSRALP 137
Query: 111 TFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL 170
+F + TN++E FFN +HI T+KKKH+TILKDVSGIIKP RMTLLLGPPSSGKTTLLLAL
Sbjct: 138 SFINSVTNVVEGFFNLLHISTSKKKHVTILKDVSGIIKPRRMTLLLGPPSSGKTTLLLAL 197
Query: 171 AGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230
+G+LD +LKVSGRVTYNGH++NEFVPQRTAAYISQHD+HIGEMTVRETLAFSARCQGVGS
Sbjct: 198 SGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGEMTVRETLAFSARCQGVGS 257
Query: 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290
RYDML+EL+RREK A IKPD +DV+MKA ATEGQE++++TDY LK+LGLD+CADT+VGD
Sbjct: 258 RYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSLVTDYTLKILGLDICADTMVGD 317
Query: 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
EM+RGISGGQ+KR+TTGEM+VGPA ALFMDEIS GLDSSTTF IV+ LRQ +HILNGTAV
Sbjct: 318 EMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVSFLRQYVHILNGTAV 377
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
ISLLQPAPETYDLFDDIIL+SDGQ+VY GP E VLDFFESMGF+CPERK VADFLQEVTS
Sbjct: 378 ISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGFRCPERKGVADFLQEVTS 437
Query: 411 RKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYG 470
+KDQ QYW R+ PYRF+TV +FSEAFQSFH+G KL +EL P DK+KSHPAALTTK YG
Sbjct: 438 KKDQAQYWARRDQPYRFVTVTQFSEAFQSFHIGGKLGEELAVPFDKTKSHPAALTTKKYG 497
Query: 471 VGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530
+ KEL KAN+SRE+LL+KRNSFVYIFKL QLS MAL++ TLF R ++++++ D G+Y
Sbjct: 498 INKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTLFLRTELHRNNMDDAGLYA 557
Query: 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSI 590
GA+FF ++M FNGM++ISMT+AKLP+FYKQR L FYP+WAYA+P+WILKIP++ LEV++
Sbjct: 558 GALFFTLVMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAYAIPSWILKIPVTLLEVAV 617
Query: 591 WVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVF 650
WVFLTYY IGFDPN+GRLFKQ L+LLFI QMASALFR IAA GRNMIV+ +FG+FA++ F
Sbjct: 618 WVFLTYYVIGFDPNVGRLFKQYLILLFIGQMASALFRAIAALGRNMIVSNTFGAFAVLTF 677
Query: 651 FAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLK 710
GGFV+++ DI N WIWGYW SP+MY Q A++ NEF +SW NS+ +LGV+ L+
Sbjct: 678 LTLGGFVMAKSDIKNWWIWGYWISPLMYGQTALMVNEFLSNSWH----NSSRNLGVEYLE 733
Query: 711 SRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIG 770
SRGF A+WYW+GLGAM GFVLLFN+ F+ +L L F+KPQA I EE N +
Sbjct: 734 SRGFPSSAYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKPQATIAEEESPNEV----- 788
Query: 771 GTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGV 830
T+ S + VV ++ KK+GMVLPFEP+S+TFD+V YS DMP+EMK +GV
Sbjct: 789 -TVAEVELPRIESSGRGGSVVESSHGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGV 847
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890
ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQ
Sbjct: 848 QEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNIKISGYPKKQ 907
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
ETF RISGYCEQNDIHSP VTVYESLLYSAWLRL + VDS+TRKMFIEE+MELVEL PLR
Sbjct: 908 ETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSSVDSQTRKMFIEEVMELVELNPLR 967
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
SLVGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+T
Sbjct: 968 NSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFM 1070
GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG +SS LI Y +
Sbjct: 1028 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSSHLIKYFE----------- 1076
Query: 1071 KAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPAP 1130
+I GV KIKDGYNPATWMLEVT++ +EL+LG+DFT++YK+SDLYRRNK LI+EL +PAP
Sbjct: 1077 -SIEGVSKIKDGYNPATWMLEVTTSAQELSLGVDFTDLYKNSDLYRRNKQLIQELGQPAP 1135
Query: 1131 DSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGT 1190
S+D+YFPT YS+SF +Q ACLWKQ WSYWRNPPY AVRF FTT IAL FGTMFWD+G+
Sbjct: 1136 GSKDLYFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGTMFWDLGS 1195
Query: 1191 KTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQV 1250
+ DL NA+GSMYTAV F+G Q SSVQPVVAVERTV+YREK AGMYS + YAFAQV
Sbjct: 1196 RRTTRGDLLNALGSMYTAVLFLGIQNASSVQPVVAVERTVFYREKAAGMYSALPYAFAQV 1255
Query: 1251 MIEIPYVLVLSVVYGVIVYAMIGFEWTAAK--------FFCLLYFTFYGMMTVAMTPNHN 1302
++EIPY+ +V YG+IVYAMIGF+WTA K FF LLYFTFYGMM V +TPNH+
Sbjct: 1256 LVEIPYIFAQAVTYGLIVYAMIGFDWTAEKFFWYLFFSFFSLLYFTFYGMMAVGVTPNHH 1315
Query: 1303 IAAIVSILFFGLWNVFSGFVIPRP 1326
+AAIV+ F+ +WN+FSGF++ RP
Sbjct: 1316 VAAIVAAAFYAIWNLFSGFIVVRP 1339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1326 | ||||||
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.952 | 0.889 | 0.546 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.953 | 0.860 | 0.552 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.754 | 0.702 | 0.684 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.755 | 0.689 | 0.597 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.756 | 0.689 | 0.596 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.751 | 0.690 | 0.582 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.533 | 0.496 | 0.462 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.756 | 0.691 | 0.530 | 4.4e-288 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.754 | 0.707 | 0.527 | 5.2e-285 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.670 | 0.627 | 0.467 | 4e-212 |
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3701 (1307.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 706/1292 (54%), Positives = 925/1292 (71%)
Query: 44 KLPSLGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAF 103
++ +L E++ L+D+LV + D E+F ++R RFD V ++ PK+EVR+++L +E+
Sbjct: 55 QIGNLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVH 114
Query: 104 LASKALPTFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGK 163
+ S+ALPT +F N+ E + +SG+I+P R+TLLLGPPSSGK
Sbjct: 115 VGSRALPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGK 174
Query: 164 TTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSA 223
TTLLLALAG+L ++L+ SG++TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+
Sbjct: 175 TTLLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAG 234
Query: 224 RCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283
RCQGVG +YDML ELARREK AGI PD +D+FMK+ A G E +++ +Y +K+LGLD C
Sbjct: 235 RCQGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTC 294
Query: 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH 343
ADTLVGDEM++GISGGQKKRLTTGE++VGPA LFMDEISNGLDSSTT I+ +R + H
Sbjct: 295 ADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTH 354
Query: 344 ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVAD 403
L GT VISLLQP+PETY+LFDD+IL+S+GQI+YQGP + VLDFF S+GF CP+RK+VAD
Sbjct: 355 ALEGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVAD 414
Query: 404 FLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAA 463
FLQEVTS+KDQ+QYW PYR++ +F+EAF+S+ G+KL +L P DK +H AA
Sbjct: 415 FLQEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAA 474
Query: 464 LTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSV 523
L+T YGV EL K N + + L+K+N+F+Y+FK +QL +AL++ T+F R M+ +++
Sbjct: 475 LSTSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTI 534
Query: 524 SDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPI 583
DG IY+G+++F++++ FNG +++ M VAKLP+ YK R L FYP+WAY LP+W+L IP
Sbjct: 535 DDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPT 594
Query: 584 SFLEVSIWVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXX 643
S +E + WV +TYY IG+DP R +Q ++QM+ LFR + + GR+MIVA
Sbjct: 595 SIIESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFG 654
Query: 644 XXXXXXXXXXXXXXXXQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNST-E 702
+D I + WIWGYW SP+MYAQNA NEF GH+W+K N T +
Sbjct: 655 SFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSD 714
Query: 703 SLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESES 762
SLG+ +LK R F +WYWIG+ A++G+ +LFNI FTL L LN + K QAV+ E
Sbjct: 715 SLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELD 774
Query: 763 NYLDNRIGG--TIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSAD 820
R G ++L Y ++SG + K RGMVLPF+P SL+F ++ Y D
Sbjct: 775 EREKKRKGDEFVVELREY------LQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVD 828
Query: 821 MPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGN 880
+P +K +G+ ED+L LL ++GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I G+
Sbjct: 829 VPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGD 888
Query: 881 ITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEI 940
+ ISG+PK+QETF RISGYCEQND+HSP +TV ESLL+SA LRL ++DSET++ F+ E+
Sbjct: 889 VYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEV 948
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
MELVEL L +LVGLPG GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIV
Sbjct: 949 MELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1008
Query: 1001 MRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQL 1060
MRTV+N V TGRT+VCTIHQPSIDIFE+FDEL MKRGG+ IY GPLG S +LI Y +
Sbjct: 1009 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFE- 1067
Query: 1061 MPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKA 1120
+I GV+KIK G+NPA WML+VT++T+E LG+DF IY++S+L +RNK
Sbjct: 1068 -----------SIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKE 1116
Query: 1121 LIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALT 1180
LIE LSKP+ +++I FPT YS+S + QF+ACLWKQ+ SYWRNP Y AVRF +T I+L
Sbjct: 1117 LIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLM 1176
Query: 1181 FGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMY 1240
GT+ W G+K Q LFNAMGSMY AV FIG ++ QPVV++ER V YRE+ AGMY
Sbjct: 1177 LGTICWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMY 1236
Query: 1241 SGMSYAFAQVMIEIPXXXXXXXXXXXXXXAMIGFEWTAAKF--------FCLLYFTFYGM 1292
S + +AFAQV IE P AM FEW+A KF F ++YFTFYGM
Sbjct: 1237 SALPFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGM 1296
Query: 1293 MTVAMTPNHNIAAIVSILFFGLWNVFSGFVIP 1324
MT A+TPNHN+A+I++ F+ LWN+FSGF+IP
Sbjct: 1297 MTTAITPNHNVASIIAAPFYMLWNLFSGFMIP 1328
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3693 (1305.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 715/1294 (55%), Positives = 918/1294 (70%)
Query: 51 QERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALP 110
++RQ+ ID + KV + DNE+ + KLR R DRVGI+LP VEVRYEHL I+A+ + +++LP
Sbjct: 98 EDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTGNRSLP 157
Query: 111 TFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGKTTLLLAL 170
T + N+ E+ D+SG+IKPGRMTLLLGPPSSGKTTLLLAL
Sbjct: 158 TLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLLAL 217
Query: 171 AGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230
AG+LD SL+VSG +TYNG+ ++EFVP++T+AYISQ+D+H+G MTV+ETL FSARCQGVG+
Sbjct: 218 AGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGVGT 277
Query: 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290
RYD+L ELARREK+AGI P+ +D+FMKA+A +G + +++TDY LK+LGLD+C DT+VGD
Sbjct: 278 RYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVGD 337
Query: 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
+M+RGISGGQKKR+TTGEM+VGP LFMDEIS GLDSSTTF IV L+Q +H+ T +
Sbjct: 338 DMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATVL 397
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
+SLLQPAPET+DLFDDIIL+S+GQIVYQGP + +L+FFES GFKCPERK ADFLQEVTS
Sbjct: 398 MSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVTS 457
Query: 411 RKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYG 470
+KDQ QYWV+ PY +I V EF+ ++SFHVG K+++EL P DKS+ H AAL Y
Sbjct: 458 KKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKYS 517
Query: 471 VGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530
V +EL K+ +E+LL++RN+F Y+FK +Q+ +A ++STLF R MN + D +YI
Sbjct: 518 VSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLYI 577
Query: 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSI 590
GA+ F +I+ FNG ++++M V++LP+FYKQR L FYP+W ++LP ++L IP S LE +
Sbjct: 578 GALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTA 637
Query: 591 WVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXXXXXXXXX 650
W+ +TYY+IGF P+ R FKQ I QMA++LFR IA+ R M++A
Sbjct: 638 WMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLLV 697
Query: 651 XXXXXXXXXQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSW--RKFTTNSTESLGVQV 708
+ I + W W YW SP+ YA N +V NE F W + ++NST LG V
Sbjct: 698 FLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMV 757
Query: 709 LKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNR 768
L + + WYWI +GA++ F LFNI FTL+LT+LN K ++ EE + +
Sbjct: 758 LNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQGK 817
Query: 769 IGGTIQLSTYGSN-------SSHSKNSGV-VRATQPKKRGMVLPFEPYSLTFDDVTYSAD 820
LST N S++S K+GMVLPF P +++FDDV Y D
Sbjct: 818 DPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVKYFVD 877
Query: 821 MPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGN 880
MP EM+ +GV E +L LL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+
Sbjct: 878 MPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD 937
Query: 881 ITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEI 940
+ ISG+PK QETF RISGYCEQ DIHSP VTV ESL++SA+LRL EV + + MF++++
Sbjct: 938 VRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQV 997
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
MELVEL LR S+VGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 998 MELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1057
Query: 1001 MRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQL 1060
MR V+NTV+TGRTVVCTIHQPSIDIFEAFDEL LMKRGGQ IY GPLG NS ++ Y +
Sbjct: 1058 MRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFES 1117
Query: 1061 MPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKA 1120
P GV KI + YNPATWMLE +S EL L +DF +Y S L++RNKA
Sbjct: 1118 FP------------GVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKA 1165
Query: 1121 LIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALT 1180
L++ELS P + D+YF T +S++ + QF +CLWKQ W+YWR+P YN VRF+FT A +L
Sbjct: 1166 LVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLL 1225
Query: 1181 FGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMY 1240
GT+FW +G DL +G++Y A+ F+G CS+VQP+VAVERTV+YRE+ AGMY
Sbjct: 1226 IGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMY 1285
Query: 1241 SGMSYAFAQVMIEIPXXXXXXXXXXXXXXAMIGFEWTAAKFF--------CLLYFTFYGM 1292
S M YA +QV E+P AM+GFEW A KFF LY+T+YGM
Sbjct: 1286 SAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGM 1345
Query: 1293 MTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326
MTV++TPN +A+I + F+G++N+FSGF IPRP
Sbjct: 1346 MTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRP 1379
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3647 (1288.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 695/1015 (68%), Positives = 821/1015 (80%)
Query: 45 LPSLGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFL 104
+ LG Q+ ++L+++L+KV D ++EK + KL+ R DRVGI+LP +EVR++HL +EAE +
Sbjct: 75 IQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHV 134
Query: 105 ASKALPTFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGKT 164
+ALPTF +F +N + F N+ DVSGI+KPGRM LLLGPPSSGKT
Sbjct: 135 GGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKT 194
Query: 165 TLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSAR 224
TLLLALAG+LD LK +GRVTYNGH MNEFVPQRTAAYI Q+DVHIGEMTVRET A++AR
Sbjct: 195 TLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAAR 254
Query: 225 CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284
QGVGSRYDMLTELARREKEA IKPD ID+FMKA +T G++ NV+TDY LK+LGL+VCA
Sbjct: 255 FQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCA 314
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI 344
DT+VGD+M+RGISGGQKKR+TTGEM+VGP+ ALFMDEIS GLDSSTT+ IVNSLR +HI
Sbjct: 315 DTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHI 374
Query: 345 LNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADF 404
NGTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GP + V++FFE+MGFKCP RK VADF
Sbjct: 375 FNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADF 434
Query: 405 LQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAAL 464
LQEVTS+KDQ QYW R+ PYRFI V+EF+EAFQSFHVG+++ DEL P DK+KSHPAAL
Sbjct: 435 LQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAAL 494
Query: 465 TTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVS 524
TTK YGVG+KEL K + SRE+LL+KRNSFVY FK QL MA ++ TLFFR M K +
Sbjct: 495 TTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEV 554
Query: 525 DGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPIS 584
DG +Y GA+FF ++M FNGMS++SMT+AKLP+FYKQR L FYPAW Y+LP W+LKIPIS
Sbjct: 555 DGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPIS 614
Query: 585 FLEVSIWVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXXX 644
F+E ++ F+TYY IGFDPN+GRLFKQ +NQMASALF+ +AA GRNMIVA
Sbjct: 615 FMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGA 674
Query: 645 XXXXXXXXXXXXXXXQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESL 704
+DDI WIWGYW SP+MY QNAI+ANEFFGHSW + NS+E+L
Sbjct: 675 FAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETL 734
Query: 705 GVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNY 764
GV LKSRGF PHA+WYWIG GA++GFV+LFN GFTL+LTFLN KPQAVI EE S+
Sbjct: 735 GVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDE 794
Query: 765 LDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKE 824
+ +Q +++ GVV A KKRGMVLPFEP+S+TFD+V YS DMP+E
Sbjct: 795 TE------LQ---------SARSEGVVEAGANKKRGMVLPFEPHSITFDNVVYSVDMPQE 839
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS 884
M +G ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI GNITIS
Sbjct: 840 MIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITIS 899
Query: 885 GYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
GYPK Q+TF RISGYCEQ DIHSP VTVYESL+YSAWLRL EVD RK+FIEE+MELV
Sbjct: 900 GYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELV 959
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
EL PLRQ+LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV
Sbjct: 960 ELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1019
Query: 1005 KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQ 1059
+NTV+TGRTVVCTIHQPSIDIFEAFDELFL+KRGG+EIYVGPLG S+ LI+Y +
Sbjct: 1020 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFE 1074
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3145 (1112.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 608/1017 (59%), Positives = 757/1017 (74%)
Query: 47 SLGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLAS 106
+L +E++ L++ ++K + DNEKF+ +LR R DRVGIE+PK+EVRYE+L++E + AS
Sbjct: 96 NLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSAS 155
Query: 107 KALPTFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGKTTL 166
+ALPT + N IE+ D+SGIIKP RMTLLLGPPSSGKTTL
Sbjct: 156 RALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTL 215
Query: 167 LLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQ 226
L ALAG+LD +L++SGR+TY GH+ EFVPQ+T AYISQHD+H GEMTVRE+L FS RC
Sbjct: 216 LQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCL 275
Query: 227 GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286
GVG+RY +LTEL+RRE+EAGIKPD ID FMK+ A GQE +++TDY LK+LGLD+CADT
Sbjct: 276 GVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADT 335
Query: 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILN 346
LVGD M RGISGGQ+KRLTTGEM+VGPA ALFMDEIS GLDSSTTF I +RQ +HI +
Sbjct: 336 LVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIAD 395
Query: 347 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQ 406
T VISLLQPAPET++LFDDIILLS+GQIVYQG + VL+FFE MGFKCPERK +ADFLQ
Sbjct: 396 VTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQ 455
Query: 407 EVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTT 466
EVTS+KDQ QYW RE PY +++V +FS F SFH GQ+L E R P DK+K+HPAAL T
Sbjct: 456 EVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVT 515
Query: 467 KGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDG 526
+ YG+ K+LFKA RE+LL+KRNSFVY+FK +Q++ M+L++ T++FR M+ +V DG
Sbjct: 516 QKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDG 575
Query: 527 GIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFL 586
+ GA+FF++I FNGM++++ TV +LP+F+KQR FYP WA+ALP ++LKIP+S +
Sbjct: 576 QKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLI 635
Query: 587 EVSIWVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXXXXX 646
E IW+ LTYY IGF P+ R F+Q +NQMA +LFRF+ A GR ++A
Sbjct: 636 ESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLA 695
Query: 647 XXXXXXXXXXXXXQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSW---RKFTTNSTES 703
+DDI + W Y+ SPMMY Q A+V NEF W T + ++
Sbjct: 696 LLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKT 755
Query: 704 LGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAV-ILEESES 762
+G +LKSRGFF +W+WI +GA++GF +LFN + ++L +LN +A ++EE +
Sbjct: 756 VGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKD 815
Query: 763 NYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMP 822
+ + G + S SSH PKK GMVLPF+P SL F++V Y DMP
Sbjct: 816 KHKGSHSGTGGSVVELTSTSSHG----------PKK-GMVLPFQPLSLAFNNVNYYVDMP 864
Query: 823 KEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNIT 882
EMK +GV D+L LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+ G+I
Sbjct: 865 AEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSIN 924
Query: 883 ISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIME 942
ISGYPK Q TF R+SGYCEQNDIHSP VTVYESL+YSAWLRL ++D++TR+MF+EE+ME
Sbjct: 925 ISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVME 984
Query: 943 LVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1002
LVELKPLR S+VGLPG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 985 LVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1044
Query: 1003 TVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQ 1059
TV+NTV+TGRTVVCTIHQPSIDIFE+FDEL LMKRGGQ IY G LG +S L+ Y +
Sbjct: 1045 TVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFE 1101
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3132 (1107.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 608/1019 (59%), Positives = 755/1019 (74%)
Query: 45 LPSLGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFL 104
L L ++++ L++ ++ + DNEKF+ LR R DRVGIE+PK+EVRYE++++E +
Sbjct: 96 LTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRS 155
Query: 105 ASKALPTFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGKT 164
AS+ALPT + N +E+ D+SGI+KP RMTLLLGPPSSGKT
Sbjct: 156 ASRALPTLFNVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKT 215
Query: 165 TLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSAR 224
TLL ALAG+LD +L++SGR+TY GH+ EFVPQ+T AYISQHD+H GEMTVRE L FS R
Sbjct: 216 TLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGR 275
Query: 225 CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284
C GVGSRY +++EL+RREKE GIKPD ID FMK+ A GQE +++TDY LK+LGLD+CA
Sbjct: 276 CLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICA 335
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI 344
D L GD M RGISGGQKKRLTTGEM+VGPA ALFMDEIS GLDSSTTF I +RQ +HI
Sbjct: 336 DILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHI 395
Query: 345 LNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADF 404
+ T +ISLLQPAPET++LFDDIILLS+GQIVYQGP + VL+FFE GF+CPERK VADF
Sbjct: 396 SDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADF 455
Query: 405 LQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAAL 464
LQEVTS+KDQ QYW RE PY +++V +FS F +FH GQKLT E R P DK+K+H AAL
Sbjct: 456 LQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAAL 515
Query: 465 TTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVS 524
T+ YG+ ELFKA RE+LL+KRNSFVY+FK +Q++ M+L++ T++ R M+ +V
Sbjct: 516 VTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVR 575
Query: 525 DGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPIS 584
DG + GAMFF++I FNG+++++ TV +LP+FYKQR FYP WA+ALPAW+LKIP+S
Sbjct: 576 DGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLS 635
Query: 585 FLEVSIWVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXXX 644
+E IW+ LTYY IGF P+ R F+Q +NQMA +LFRF+ A GR +++
Sbjct: 636 LIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGT 695
Query: 645 XXXXXXXXXXXXXXXQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRK--FTTN-ST 701
+DDI W Y+ SPMMY Q AIV NEF W + T +
Sbjct: 696 FTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINA 755
Query: 702 ESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESE 761
+++G +LKSRGFF +W+WI + A++GF LLFN+ + L+L +LN +A ++EE +
Sbjct: 756 KTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGK 815
Query: 762 SNYL-DNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSAD 820
+NR GT + S NSS +K PK RGMVLPF+P SL F++V Y D
Sbjct: 816 DKQKGENR--GT-EGSVVELNSSSNKG--------PK-RGMVLPFQPLSLAFNNVNYYVD 863
Query: 821 MPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGN 880
MP EMK +GV D+L LL V GAFRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYI G+
Sbjct: 864 MPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGS 923
Query: 881 ITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEI 940
I+ISGYPK Q TF R+SGYCEQNDIHSP VTVYESL+YSAWLRL T++D +TR++F+EE+
Sbjct: 924 ISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEV 983
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
MELVELKPLR S+VGLPG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 984 MELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1043
Query: 1001 MRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQ 1059
MRTV+NTV+TGRTVVCTIHQPSIDIFE+FDEL LMKRGGQ IY G LG +S L+ Y +
Sbjct: 1044 MRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFE 1102
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3026 (1070.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 590/1013 (58%), Positives = 737/1013 (72%)
Query: 51 QERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALP 110
+ERQ+ ID + KV + DNE+ + KLR R DRVGI+LP VEVRY+HL ++A+ + ++LP
Sbjct: 96 EERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLP 155
Query: 111 TFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGKTTLLLAL 170
+ + N+ EA DVSGI+KP RMTLLLGPPSSGKTTLLLAL
Sbjct: 156 SLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLAL 215
Query: 171 AGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230
AG+LD SL VSG VTYNG+ +NEFVP +T+AYISQ+D+H+G MTV+ETL FSARCQGVG+
Sbjct: 216 AGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGT 275
Query: 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290
RYD+L ELARREK+AGI P+ +D+FMKA+A +G +++++TDY LK+LGLD+C DT+VGD
Sbjct: 276 RYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGD 335
Query: 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
+M+RGISGGQKKR+TTGEM+VGP LFMDEIS GLDSSTTF IV L+Q +H+ T +
Sbjct: 336 DMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVL 395
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
ISLLQPAPET+DLFDDIILLS+GQIVYQGP + +L+FFES GFKCPERK ADFLQEVTS
Sbjct: 396 ISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTS 455
Query: 411 RKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYG 470
+KDQ QYWV PYR+I V EF+ +F+ FHVG KL++EL P DKSKSH AAL Y
Sbjct: 456 KKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYS 515
Query: 471 VGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530
+ EL K+ +E++L+KRNSF Y+FK +Q+ +A ++STL+ R M+ + D IY+
Sbjct: 516 IKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYV 575
Query: 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSI 590
G++ FA+I+ FNG+++++MT+ +LP+FYKQR L F+P W Y LP ++L IPIS E +
Sbjct: 576 GSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTA 635
Query: 591 WVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXXXXXXXXX 650
W+ +TYY+IG+ P+ R FKQ I QMA+ +FRFIA+ R M +A
Sbjct: 636 WMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVV 695
Query: 651 XXXXXXXXXQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSW-RKFTTNSTESLGVQVL 709
+ +I W W YW SP+ YA NAI NE F W K + NST LG VL
Sbjct: 696 FLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVL 755
Query: 710 KSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRI 769
F WYWIG+G ++GF ++FN FTL+LT+L+ K QA++ +E D
Sbjct: 756 NIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEE-----DEEA 810
Query: 770 GGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKG 829
G GSN S V A K+GMVLPF P +++FDDV Y DMP EM+ +G
Sbjct: 811 KGKA-----GSNKETEMES--VSA----KKGMVLPFTPLAMSFDDVKYFVDMPAEMREQG 859
Query: 830 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889
V E +L LL GV+ AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G++ +SG+PKK
Sbjct: 860 VQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKK 919
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
QETF RISGYCEQ DIHSP VTV ESL++SA+LRL EV E + MF++++MELVEL L
Sbjct: 920 QETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDL 979
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009
R ++VGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR V+NTV+
Sbjct: 980 RDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 1039
Query: 1010 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMP 1062
TGRTVVCTIHQPSIDIFEAFDEL LMKRGG IY GPLG NS ++ Y + P
Sbjct: 1040 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFP 1092
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1746 (619.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 328/709 (46%), Positives = 468/709 (66%)
Query: 52 ERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALPT 111
+R+ L+ + + +D DN K + ++ R DRVG+E+PK+EVR+E+LNIEA+ ++ALPT
Sbjct: 88 DREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPT 147
Query: 112 FTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGKTTLLLALA 171
+ + E +S D+SGIIKPGRMTLLLGPP SGK+TLLLALA
Sbjct: 148 LVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALA 207
Query: 172 GQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 231
G+LD SLK +G +TYNG ++N+F +RT+AYISQ D HI E+TVRETL F+ARCQG
Sbjct: 208 GKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEG 267
Query: 232 Y-DMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290
+ + +L R EKE GI+P ID FMKAA+ +G++ +V TDY LKVLGLDVC+DT+VG+
Sbjct: 268 FAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGN 327
Query: 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
+M+RG+SGGQ+KR+TTGEM VGP LFMDEIS GLDSSTTF IV +R +H+++ T +
Sbjct: 328 DMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVL 387
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
++LLQPAPET+DLFDD+ILLS+G +VYQGP E V+ FFES+GF+ P RK VADFLQEVTS
Sbjct: 388 MALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTS 447
Query: 411 RKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYG 470
+KDQ QYW PY+FI V + + AF++ G +L P DK + P+AL +
Sbjct: 448 KKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFA 507
Query: 471 VGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530
+ E K RE LLIKR+ F+Y F+ Q+ + LV++T+F + ++ S G Y+
Sbjct: 508 ISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYL 567
Query: 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSI 590
+FF ++ FNG S++ + +++LP+FYKQR F+PAW++++ +W+L++P S LE +
Sbjct: 568 SCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVV 627
Query: 591 WVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXXXXXXXXX 650
W + Y+ +G P+ GR F+ ++QMA LFR +A+ R+M++A
Sbjct: 628 WSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIV 687
Query: 651 XXXXXXXXXQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLK 710
+ DI W+WG+W SP+ Y Q AI NEF W + S ++G+ +LK
Sbjct: 688 FLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLK 747
Query: 711 SRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEE 759
R F + +WYWIG+ +IG+ +LFN TL+L +LN K +AV+L++
Sbjct: 748 LRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD 796
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2747 (972.1 bits), Expect = 4.4e-288, Sum P(2) = 4.4e-288
Identities = 540/1017 (53%), Positives = 712/1017 (70%)
Query: 48 LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEA-FLAS 106
LG ER +I+KL+K + DN K + K+R R DRVG+ELP +EVRYE L + AE +
Sbjct: 98 LGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEG 157
Query: 107 KALPTFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGKTTL 166
KALPT + ++ DV+GIIKPGR+TLLLGPPS GKTTL
Sbjct: 158 KALPTLWNTAKRVLSELVK-LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTL 216
Query: 167 LLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQ 226
L AL+G L+++LK SG ++YNGH ++EFVPQ+T+AYISQ+D+HI EMTVRET+ FSARCQ
Sbjct: 217 LKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQ 276
Query: 227 GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286
GVGSR D++ E+++REKE GI PD +D +MKA + EG + ++ TDY LK+LGLD+CA+
Sbjct: 277 GVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEI 336
Query: 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILN 346
L+GD M RGISGGQKKRLTT EM+VGP ALFMDEI+NGLDSST F IV SL+Q HI +
Sbjct: 337 LIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISS 396
Query: 347 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQ 406
T ++SLLQPAPE+YDLFDDI+L++ G+IVY GP VL+FFE GF+CPERK VADFLQ
Sbjct: 397 ATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQ 456
Query: 407 EVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTT 466
EV S+KDQ QYW H ++PY F++V+ S+ F+ +G+K+ D L P D+SKSH AL+
Sbjct: 457 EVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSF 516
Query: 467 KGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDG 526
Y + ELF A ISRE+LL+KRN FVYIFK QL A ++ T+F R M D + G
Sbjct: 517 SVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIH-G 575
Query: 527 GIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFL 586
Y+ A+FFA+I+ +G ++SMT +L +FYKQ+ L FYPAWAYA+PA +LK+P+SF
Sbjct: 576 NSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFF 635
Query: 587 EVSIWVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXXXXX 646
E +W L+YY IG+ P R FKQ ++ + ++FR +AA + ++ ++
Sbjct: 636 ESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFG 695
Query: 647 XXXXXXXXXXXXXQDDINNGWI-WGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLG 705
+ W+ WG+W +P+ Y + + NEF W + N+ +LG
Sbjct: 696 ILFTFVFAGFVIPPPSMP-AWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNF-TLG 753
Query: 706 VQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYL 765
+L++RG + + YW+ L A++GF +LFNI FTL+LTFL +A+I ++ S
Sbjct: 754 RTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSE-- 811
Query: 766 DNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEM 825
+ GT + ST S+ V+ + K MVLPF+P ++TF D+ Y DMP EM
Sbjct: 812 ---LQGT-EKSTEDSSVRKKTTDSPVKTEEEDK--MVLPFKPLTVTFQDLNYFVDMPVEM 865
Query: 826 KLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG 885
+ +G + KL LL+ ++GAFRPG+LTALMGVSGAGKTTL+DVLAGRKT GYI G+I ISG
Sbjct: 866 RDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISG 925
Query: 886 YPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
+PK QETF R+SGYCEQ DIHSP +TV ES++YSAWLRL E+D+ T+ F+++++E +E
Sbjct: 926 FPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIE 985
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
L ++ SLVG+ G SGLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR VK
Sbjct: 986 LDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1045
Query: 1006 NTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMP 1062
N +TGRT+VCTIHQPSIDIFEAFDEL L+KRGG+ IY GPLG +S +I Y + +P
Sbjct: 1046 NVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVP 1102
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2716 (961.1 bits), Expect = 5.2e-285, Sum P(2) = 5.2e-285
Identities = 537/1018 (52%), Positives = 707/1018 (69%)
Query: 48 LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEA-FLAS 106
LG ER +I+KL+K + DN K + K+R R +RVG+E P +EVRYEHL +EA +
Sbjct: 63 LGAMERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEG 122
Query: 107 KALPTFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGPPSSGKTTL 166
KALPT + ++ DVSGII PGR+TLLLGPP GKTTL
Sbjct: 123 KALPTLWNSLKHVFLDLLK-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTL 181
Query: 167 LLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQ 226
L AL+G L+++LK G ++YNGH +NE VPQ+T+AYISQHD+HI EMT RET+ FSARCQ
Sbjct: 182 LKALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQ 241
Query: 227 GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286
GVGSR D++ E+++REK+ GI PD ID +MKA + +G + ++ TDY LK+LGLD+CA+T
Sbjct: 242 GVGSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAET 301
Query: 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILN 346
LVG+ M RGISGGQKKRLTT EM+VGP ALFMDEI+NGLDSST F I+ SL+Q HI N
Sbjct: 302 LVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITN 361
Query: 347 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQ 406
T +SLLQPAPE+YDLFDDI+L+++G+IVY GP + VL FFE GF+CPERK VADFLQ
Sbjct: 362 ATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQ 421
Query: 407 EVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTT 466
EV S+KDQ QYW+H+ +P+ F++V S+ F+ +G+K+ + L P D SK+H AL+
Sbjct: 422 EVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSF 481
Query: 467 KGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDG 526
Y + ELF+A ISREFLL+KRN FVY+FK QL A+++ T+F R M+ D + G
Sbjct: 482 NVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIH-G 540
Query: 527 GIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFL 586
Y+ +FFA ++ +G+ ++SMTV +L +FYKQ+ L FYPAWAYA+PA +LKIP+SF
Sbjct: 541 NSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFF 600
Query: 587 EVSIWVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIVAMXXXXXX 646
E +W LTYY IG+ P R F+Q ++ + ++FR IAA + + AM
Sbjct: 601 ESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFV 660
Query: 647 XXXXXXXXXXXXXQDDINNGWI-WGYWCSPMMYAQNAIVANEFFGHSWRKFT-TNSTESL 704
D+ GW+ WG+W +P+ YA+ + NEF W+K TN T L
Sbjct: 661 MLITFVFAGFAIPYTDMP-GWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNVT--L 717
Query: 705 GVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNY 764
G +L+SRG + YW+ L A++G ++FN FTL+L+FL + +I ++ S
Sbjct: 718 GRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSE- 776
Query: 765 LDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKE 824
+ GT S + +S + P K M+LPF+P ++TF D+ Y D+P E
Sbjct: 777 ----LQGTKDSSV---KKNKPLDSSIKTNEDPGK--MILPFKPLTITFQDLNYYVDVPVE 827
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS 884
MK +G +E KL LL+ ++GAFRPGVLTALMG+SGAGKTTL+DVLAGRKT GYI G I IS
Sbjct: 828 MKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRIS 887
Query: 885 GYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
G+ K QETF R+SGYCEQ DIHSP +TV ESL+YSAWLRL E++ +T+ F+++++E +
Sbjct: 888 GFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETI 947
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
EL+ ++ +LVG+ G SGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V
Sbjct: 948 ELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1007
Query: 1005 KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMP 1062
KN ETGRT+VCTIHQPSI IFEAFDEL L+KRGG+ IY GPLG +SS +I Y Q +P
Sbjct: 1008 KNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIP 1065
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2013 (713.7 bits), Expect = 4.0e-212, Sum P(2) = 4.0e-212
Identities = 438/936 (46%), Positives = 588/936 (62%)
Query: 42 HEKL---PSLGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNI 98
HE L LG+ +RQ+ ID + KVT+ DNEKF+ K R R DRV I+LP VEVR+E + I
Sbjct: 62 HEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTI 121
Query: 99 EAEAFLASKALPTFTSFFTNIIEAFFNSXXXXXXXXXXXXXXXDVSGIIKPGRMTLLLGP 158
EA + +ALPT + NI E DVSGIIKP RMTLLLGP
Sbjct: 122 EANCHIGKRALPTLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGP 181
Query: 159 PSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218
PSSGKTTLLLALAG+LD SLKV+GRVTYNGH + EFVPQ+T+AYISQ+DVH+G MTV+ET
Sbjct: 182 PSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQET 241
Query: 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL 278
L FSARCQGVG+RYD+L+EL RREK+AGI P+ +D+FMK+ A +++++TDY L++L
Sbjct: 242 LDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRIL 301
Query: 279 GLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSL 338
GLD+C DT+VGDEM+RGISGGQKKR+TTGEM+VGP LFMDEIS GLDSSTT+ IV L
Sbjct: 302 GLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL 361
Query: 339 RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPER 398
++ + + T ++SLLQPAPET++LFDDIILLS+GQIVYQGP + VL FFE+ GFKCP+R
Sbjct: 362 QEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDR 421
Query: 399 KSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSK 458
K ADFLQEVTSRKDQ QYW + PY +I+V EFS+ F++FHVG L +L P D+ K
Sbjct: 422 KGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFK 481
Query: 459 SHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANM 518
SHPA+L K + V +LFK RE LL+KRN+F YI K +Q+ MAL++ST++ R M
Sbjct: 482 SHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEM 541
Query: 519 NKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWI 578
+ SDG +YIGA+ F++I+ FNG +++++ + +LP+FYKQR L F+P W ++LP ++
Sbjct: 542 GTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFL 601
Query: 579 LKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQXXXXXFINQMASALFRFIAAAGRNMIV 638
L IPIS E +WV +TYY IGF P + R K QMA +FRFIAA R+MI+
Sbjct: 602 LGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMIL 661
Query: 639 AMXXXXXXXXXXXXXXXXXXXQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSW--RKF 696
A + +I W W YW SPM Y +A+ NE W +
Sbjct: 662 ANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPS 721
Query: 697 TTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVI 756
+ NST SLG+ VL+ F WYWIG+G ++GF +LFNI TL+LTFLN EK QAV+
Sbjct: 722 SDNST-SLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVV 780
Query: 757 LEESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFD--- 813
S+ N +NR N S SK+ V R + + F+ + D
Sbjct: 781 ---SKENTEENR----------AENGSKSKSIDVKRGMVLPFTPLTMSFDNVNYYVDMPK 827
Query: 814 ---DVTYSADMPKEMK-LKGVHEDK-LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+ S D + +K + GV L L GVSGA + T LM V AG+ T +
Sbjct: 828 EMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGK----TTLMDVL-AGRKTGGYIE 882
Query: 869 AGRKTGGYISGNIT---ISGYPKKQETFT-RISGYCEQNDIHSPLVTVYESLLYSAWLRL 924
+ G+ T ISGY ++ + + +++ +++ I+S + + + + + + ++
Sbjct: 883 GDIRISGFPKRQETFARISGYCEQNDIHSPQVT--VKESLIYSAFLRLPKEV--TKYEKM 938
Query: 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960
R VD + E++EL LK L G+ G S
Sbjct: 939 RF-VDE------VMELVELESLKDAVVGLPGITGLS 967
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5790 | 0.9622 | 0.8733 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6705 | 0.9811 | 0.8929 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6784 | 0.9736 | 0.9072 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6450 | 0.9849 | 0.9063 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6852 | 0.9713 | 0.8981 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6681 | 0.9690 | 0.8948 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6698 | 0.9811 | 0.8929 | N/A | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3152 | 0.8318 | 0.8305 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5132 | 0.9766 | 0.8949 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ABC | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1433 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1326 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-98 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-85 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-73 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-72 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-54 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-47 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-43 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-43 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-42 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-40 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-40 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 9e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-36 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-31 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-30 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-29 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-27 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-22 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-21 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-20 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 9e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-19 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-19 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-19 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-18 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-18 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-17 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-16 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-15 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-15 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-14 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-14 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-14 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-13 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-13 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-13 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-13 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-13 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-13 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-12 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-12 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-12 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-12 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 8e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-11 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-11 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 8e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-10 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-10 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-10 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-09 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-09 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-09 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 9e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-08 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-08 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-08 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 8e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 9e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-07 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-07 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-07 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 9e-07 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-06 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-06 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-06 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 8e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-06 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-05 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-05 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 8e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 9e-05 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-04 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-04 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-04 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-04 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-04 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-04 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 8e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.001 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.001 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.002 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.002 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 0.002 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.002 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.002 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.002 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.002 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.003 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 0.003 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 0.003 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.003 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.003 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.003 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.003 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.004 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 0.004 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.004 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.004 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1852 bits (4800), Expect = 0.0
Identities = 803/1392 (57%), Positives = 994/1392 (71%), Gaps = 83/1392 (5%)
Query: 6 STSRSASPRSSSEGAFPRSPREEEE---------------DDEKEALKWAAHEKLPS--- 47
+ SR S R S + RS R E+ D+++EALKWAA EKLP+
Sbjct: 1 ARSRGGSMRRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSR 60
Query: 48 ----------------------------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRF 79
L +RQ+ ID + KV + DNEKF+ K R R
Sbjct: 61 LRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRI 120
Query: 80 DRVGIELPKVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTI 139
DRVGI+LP VEVR+EHL +EA+ ++ S+ALPT + NI E+ + I KK LTI
Sbjct: 121 DRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTI 180
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
LKD SGIIKP RMTLLLGPPSSGKTTLLLALAG+LD SLKVSG +TYNG+ +NEFVP++T
Sbjct: 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKT 240
Query: 200 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
+AYISQ+DVH+G MTV+ETL FSARCQGVG+RYD+L+ELARREK+AGI P+ +D+FMKA
Sbjct: 241 SAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKA 300
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFM 319
A EG +++++TDY LK+LGLD+C DT+VGDEM+RGISGGQKKR+TTGEM+VGP LFM
Sbjct: 301 TAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFM 360
Query: 320 DEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
DEIS GLDSSTT+ IV L+Q +H+ T ++SLLQPAPET+DLFDDIILLS+GQIVYQG
Sbjct: 361 DEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQG 420
Query: 380 PCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQS 439
P + +L+FFES GFKCPERK ADFLQEVTS+KDQ QYW R PYR+I+V EF+E F+S
Sbjct: 421 PRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKS 480
Query: 440 FHVGQKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKL 499
FHVG +L +EL P DKS+SH AAL Y V EL KA +E+LL+KRN+FVY+FK
Sbjct: 481 FHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKT 540
Query: 500 IQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFY 559
+Q+ +A ++ST+F R M+ + DG +YIGA+ F++I+ FNG +++++ + +LP+FY
Sbjct: 541 VQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFY 600
Query: 560 KQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFIN 619
KQR L F+P W + LP ++L IPIS +E +WV +TYY+IGF P R FKQLLL+ I
Sbjct: 601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQ 660
Query: 620 QMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYA 679
QMA+ +FR IA+ R MI+A + G+ L++ F GGF+L + +I N W W YW SP+ Y
Sbjct: 661 QMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYG 720
Query: 680 QNAIVANEFFGHSW-RKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIG 738
NA+ NE F W K ++++ LG VL F WYWIG+GA++GF +LFN+
Sbjct: 721 FNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVL 780
Query: 739 FTLSLTFLNQFEKPQAVILEESESNYLDNRIGGTIQLSTYGSN-------SSHSKNSGVV 791
FTL+LT+LN K QA+I EE+ LS+ N S G+
Sbjct: 781 FTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLS 840
Query: 792 RATQ---------PKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVS 842
+ KRGMVLPF P +++FDDV Y DMP EMK +GV ED+L LL V+
Sbjct: 841 KNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVT 900
Query: 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQ 902
GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETF RISGYCEQ
Sbjct: 901 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQ 960
Query: 903 NDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962
NDIHSP VTV ESL+YSA+LRL EV E + MF++E+MELVEL L+ ++VGLPG +GL
Sbjct: 961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020
Query: 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022
STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV+NTV+TGRTVVCTIHQPS
Sbjct: 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
Query: 1023 IDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDG 1082
IDIFEAFDEL LMKRGGQ IY GPLG NS +I Y + AI GV KIK+
Sbjct: 1081 IDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFE------------AIPGVPKIKEK 1128
Query: 1083 YNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPAPDSQDIYFPTWYS 1142
YNPATWMLEV+S E+ LGIDF YK S LY+RNKAL++ELS P P + D+YF T YS
Sbjct: 1129 YNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYS 1188
Query: 1143 RSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAM 1202
+S + QF +CLWKQ W+YWR+P YN VRF FT A AL GT+FW +GTK DL +
Sbjct: 1189 QSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVI 1248
Query: 1203 GSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSV 1262
G+MY AV F+G CS+VQP+VAVERTV+YRE+ AGMYS + YA AQV+ EIPYVL+ +
Sbjct: 1249 GAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTT 1308
Query: 1263 VYGVIVYAMIGFEWTAAKFF--------CLLYFTFYGMMTVAMTPNHNIAAIVSILFFGL 1314
Y +IVYAM+ FEWTAAKFF LYFT+YGMMTV++TPN +AAI + F+GL
Sbjct: 1309 YYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGL 1368
Query: 1315 WNVFSGFVIPRP 1326
+N+FSGF IPRP
Sbjct: 1369 FNLFSGFFIPRP 1380
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1100 bits (2846), Expect = 0.0
Identities = 396/1338 (29%), Positives = 620/1338 (46%), Gaps = 150/1338 (11%)
Query: 67 DNEKFMLKLRYRFDRVGIELP--KVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFF 124
+ + ++ R D I K+ V Y++L+ A S PTF + I+ F
Sbjct: 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTRGF 62
Query: 125 NSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLK-VSGR 183
+ K ILK + G+IKPG +T++LG P SG +TLL +A D V G
Sbjct: 63 RKL-KKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 184 VTYNGHDMNEFVPQRTA--AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARR 241
+TY+G E Y ++ DVH +TV ETL F+ARC+ +R D ++
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 242 EKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQK 301
+ + D Y+ GL +T VG++ VRG+SGG++
Sbjct: 182 KH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215
Query: 302 KRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETY 361
KR++ E +G A D + GLDS+T + +L+ + +IL+ T ++++ Q + + Y
Sbjct: 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY 275
Query: 362 DLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHR 421
+LFD +I+L +G +Y GP + +FE MGFKCP+R++ ADFL +TS +RQ
Sbjct: 276 ELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGY 334
Query: 422 EMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKS--------------KSHP-AALTT 466
E T QEF +++ +L E+ LD+ +
Sbjct: 335 EKKV-PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPS 393
Query: 467 KGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDG 526
Y V K ++R FL +K N +F + MAL+ S++F+ N SD
Sbjct: 394 SPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SDF 450
Query: 527 GIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFL 586
GA+FFA++ F+ + +I+ PI K R Y A A+ + I +IP +
Sbjct: 451 YSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKII 510
Query: 587 EVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFA 646
E ++ + Y+ + F GR F LL+L S LFR I A + + AM+ +
Sbjct: 511 ESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAIL 570
Query: 647 LVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTN------- 699
L+ + GF + + + W Y+ +P+ YA +++ NEF G R+F +
Sbjct: 571 LLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHG---RRFECSQYVPSGG 627
Query: 700 STESLGV--QVLKSRGFFPHAF-----------------WYWIGLGAMIGFVLLFNIGFT 740
++LGV +V G P W G +IGF + F +
Sbjct: 628 GYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYI 687
Query: 741 LSLTFLNQFEKPQAVILEESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPK--K 798
L F ++ +++ + +K +G A+ +
Sbjct: 688 LLTEFNKGAKQKGEILVFRR-------------------GSLKRAKKAGETSASNKNDIE 728
Query: 799 RGMVLPFEPYSLTFDDVTYSADMPKEMKLK-----------GVHEDKLVLLNGVSGAFRP 847
G VL + DDV DM KE + ++K V+LN V G +P
Sbjct: 729 AGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKP 788
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS 907
G LTALMG SGAGKTTL++VLA R T G I+G + +F R GY +Q D+H
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHL 848
Query: 908 PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967
P TV ESL +SA+LR V + ++EE+++L+E++ ++VG+PGE GL+ EQR
Sbjct: 849 PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQR 907
Query: 968 KRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIF 1026
KRLTI VELVA P ++F+DEPTSGLD++ A + + ++ + G+ ++CTIHQPS +F
Sbjct: 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILF 967
Query: 1027 EAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPA 1086
E FD L L+++GGQ +Y G LG NS +I+Y + G K + NPA
Sbjct: 968 EEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-------------KHGAPKCPEDANPA 1014
Query: 1087 TWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPAPDSQDIYFPTW---YSR 1143
WMLEV D+ ++++S Y+ K ++ L ++D P Y+
Sbjct: 1015 EWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA 1074
Query: 1144 SFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMG 1203
S + QF LW+ YWR P Y +F T AL G F+ +GT Q L N M
Sbjct: 1075 SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QGLQNQMF 1131
Query: 1204 SMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVV 1263
+++ A + + P VA RE+ + +S +++ AQ+ +EIPY LV +
Sbjct: 1132 AVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTI 1191
Query: 1264 YGVIVYAMIGFEWTAAK---------------FFCLLYFTFYGMMTVAMTPNHNIAAIVS 1308
+ I Y +GF W A+K LYF+ G M ++ PN + AA+++
Sbjct: 1192 FFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLA 1251
Query: 1309 ILFFGLWNVFSGFVIPRP 1326
L F + F G + P
Sbjct: 1252 SLLFTMCLSFCGVLAPPS 1269
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = 1e-98
Identities = 110/239 (46%), Positives = 141/239 (58%), Gaps = 47/239 (19%)
Query: 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 866
LT+ ++ Y+ + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 867 VLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926
VLAGRKT G I+G I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
EPTSGLD++AA ++R +K ++G+ ++CTIHQPS IFE FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 291 bits (748), Expect = 1e-85
Identities = 154/506 (30%), Positives = 243/506 (48%), Gaps = 42/506 (8%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ISGNITISGYPKKQETFTR 895
LL VSG +PG L A+MG SGAGKTTLM+ LA R G SG++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
IS Y +Q+D+ P +TV E L++ A LR+ V + ++ ++E+++ + L+ + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 956 LPGE-SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1014
+PG GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ +K + G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1015 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFMKAIS 1074
+CTIHQPS ++FE FD++ LM G+ Y+G + S L
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQAVPFFSDLGHP------------- 264
Query: 1075 GVEKIKDGYNPATWMLEVTSTT--KELALGIDFTNIYKH---SDLYRRNKALIEELSKPA 1129
+ YNPA + ++V + E I SD+ R S A
Sbjct: 265 ----CPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKA 320
Query: 1130 P----DSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMF 1185
DS+++ Y+ S++ QF A L + S R+P VR + T A+ G ++
Sbjct: 321 GGLVKDSENMEG-IGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIY 379
Query: 1186 WDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSY 1245
G K Q N G+++ + + Q V V E V+ RE +G+Y +Y
Sbjct: 380 LGQGLTQKGVQ---NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAY 436
Query: 1246 AFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKFF-----CLLYF---TFYGMMTVAM 1297
A+ + E+P ++L ++ I Y MIG A F L T +G +
Sbjct: 437 FLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCA 496
Query: 1298 TPNHNIAAIVSILFFGLWNVFSGFVI 1323
+ ++A V F + +F GF I
Sbjct: 497 FSSTSMALTVGPPFVIPFLLFGGFFI 522
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 257 bits (658), Expect = 2e-73
Identities = 154/628 (24%), Positives = 282/628 (44%), Gaps = 59/628 (9%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187
++ +LK+VSG+ KPG + ++G +GKTTL+ ALA + +K SG V N
Sbjct: 29 GCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLN 88
Query: 188 GHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
G ++ + +AY+ Q D+ I +TVRE L F A + M + ++EK +
Sbjct: 89 GMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR-------MPRRVTKKEKRERV 141
Query: 248 KPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE-MVRGISGGQKKRLTT 306
VL LGL CA+T +G V+G+SGG++KRL
Sbjct: 142 D-------------------EVLQA-----LGLRKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 307 G-EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVISLLQPAPETYDL 363
E++ P L LF DE ++GLDS + +V L+ + T + ++ QP+ E ++L
Sbjct: 178 ASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK---GLAQKGKTIICTIHQPSSELFEL 233
Query: 364 FDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREM 423
FD IIL+++G++ Y G + + FF +G CPE + ADF +V + +
Sbjct: 234 FDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRE-- 291
Query: 424 PYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTK---GYGVGMKELFKAN 480
+++ ++F +G+ + K+ GY F A
Sbjct: 292 -----RIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYAL 346
Query: 481 ISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMT 540
+ R +L + R+ + +LIQ A++ ++ + + V + GA+F +
Sbjct: 347 LKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLFLTNM 403
Query: 541 TF-NGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAI 599
TF N I++ A+LP+F ++ Y AY L I ++P+ + +++ +TY+ I
Sbjct: 404 TFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMI 463
Query: 600 GFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLS 659
G L L+ + +A++ I+ A + +A++ G ++ F FGGF ++
Sbjct: 464 GLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFIN 523
Query: 660 QDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTE----SLGVQVLKSRGFF 715
D I + W + S Y ++ N++ + T+ +T S G +L++ F
Sbjct: 524 SDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSF- 582
Query: 716 PHAFWYWIGLGAMIGFVLLFNIGFTLSL 743
++ L ++ + F + +L
Sbjct: 583 -RNADLYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 8e-72
Identities = 95/237 (40%), Positives = 140/237 (59%), Gaps = 45/237 (18%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+L+F ++T + + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 869 AGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEV 928
AGR+TG +SG + I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 929 DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
TSGLD+ +A VM ++ +TGRT++C+IHQPS +IFE FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 2e-54
Identities = 80/211 (37%), Positives = 123/211 (58%), Gaps = 8/211 (3%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-SGNITISGYPKKQETFTR 895
+LN VS G + A++G SG+GKTTL+D ++GR GG SG I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIE-EIMELVELKPLRQSLV 954
Y Q+DI P +TV E+L Y+A LRL + RK +E ++ + L + +LV
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1014
G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V
Sbjct: 142 -----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196
Query: 1015 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
+ TIHQP D+F FD + L+ G +Y G
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-47
Identities = 152/586 (25%), Positives = 248/586 (42%), Gaps = 97/586 (16%)
Query: 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN 192
KK+ IL +V G +KPG +T L+G +GKTTLL LA ++ + + G NG ++
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831
Query: 193 E-FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
F QR+ Y+ Q D+H+ TVRE+L FSA R+ K
Sbjct: 832 SSF--QRSIGYVQQQDLHLPTSTVRESLRFSAYL--------------RQPKSVSKS--- 872
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG-EMM 310
E + +K+L ++ AD +VG G++ Q+KRLT G E++
Sbjct: 873 --------------EKMEYVEEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGVELV 917
Query: 311 VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI-SLLQPAPETYDLFDDIIL 369
P L LF+DE ++GLDS T + I +R+ +G A++ ++ QP+ ++ FD ++L
Sbjct: 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD--HGQAILCTIHQPSAILFEEFDRLLL 975
Query: 370 LSDG-QIVYQGP----CELVLDFFESMGF-KCPERKSVADFLQEV-----TSRKDQRQYW 418
L G Q VY G ++++FE G KCPE + A+++ EV + +Q +
Sbjct: 976 LQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHE 1035
Query: 419 VHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFK 478
V R S +Q+ + D L L K++ Y + FK
Sbjct: 1036 VWRN-----------SSEYQAV---KNELDRLEAELSKAEDDNDPDALSKYAASLWYQFK 1081
Query: 479 ANISREFLLIKRNSFVYIF-KLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMF-FA 536
+ R F R + Y++ K AL FF+ + + + + A+F
Sbjct: 1082 LVLWRTFQQYWR-TPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQN---QMFAVFMAT 1137
Query: 537 VIMTTFNGMSDISMTVAKLPIFYKQRGL--------RFYPAWAYALPAWILKIPISFLEV 588
V+ LP F QR L R + A+ ++IP + +
Sbjct: 1138 VLFNPLIQQY--------LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAG 1189
Query: 589 SIWVFLTYYAIGFDPNI---------GRLFKQLLLLLFINQMASALFRFIAAAGRNMIVA 639
+I+ F+ YY +GF N G LF L + F+ S L + + + N A
Sbjct: 1190 TIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFL--YFSTLGQMVISFNPNADNA 1247
Query: 640 MSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVA 685
S + +F G + + WI+ Y CSP Y A+++
Sbjct: 1248 AVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-43
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 19/232 (8%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP--KKQ 890
L+GVS PG + L+G +GAGKTTL+ +LAG SG I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
R GY Q P +TV E+L + A L ++ ++E R IEE++EL L+
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVE 1009
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + ++ E
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1010 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLM 1061
G T++ + H + E D + ++ G I G +L
Sbjct: 186 GGVTILLSTHILE-EAEELCDRVIILNDGKI-IAEGTP----EELKEKFGGK 231
|
Length = 293 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 2e-43
Identities = 131/495 (26%), Positives = 239/495 (48%), Gaps = 45/495 (9%)
Query: 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLV-----------------LLNGVSGAFRPGV 849
P +L F DV Y MK KG + +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKFEN-MKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPL 909
+ A++G SG+GK+TL++ LAGR G +G I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969
+TV E+L++ + LRL + + + + E ++ + L +++G G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAF 1029
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1030 DELFLMKRGGQEIYVGPLGSNSSDLISYLQLM------PMHVTFIFMKAISGV---EKIK 1080
D + ++ G+ ++ G SD ++Y + + PM+ + +GV + +
Sbjct: 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVS 329
Query: 1081 DGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPAPDSQDIYFPTW 1140
+ P V S LA + I + + +K S I TW
Sbjct: 330 EREKPNVKQSLVASYNTLLAPKVK-AAIEMSHFPQANARFVGSASTKEHRSSDRISISTW 388
Query: 1141 YSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFN 1200
+++ F L K+ ++ +N +R A AL G M+W +D+ +
Sbjct: 389 FNQ--FSILLQRSLKER----KHESFNTLRVFQVIAAALLAGLMWWH-----SDFRDVQD 437
Query: 1201 AMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVL 1260
+G ++ F G + V ER ++ +E+ +GMY+ SY A+++ ++P L+L
Sbjct: 438 RLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL 497
Query: 1261 SVVYGVIVYAMIGFE 1275
++ + Y M G +
Sbjct: 498 PTIFLTVTYWMAGLK 512
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 4e-42
Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 8/216 (3%)
Query: 475 ELFKANISREFLLIKRNSFV-YIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAM 533
KA + REFL R+ + +++LIQ MALV T+F + + ++ G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLN----RPGLL 56
Query: 534 FFAVIMTTFNGMSDISMTVAK-LPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWV 592
FF+++ F+ ++ IS + + ++ Y AY L ++++PIS L+ I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 593 FLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFA 652
+ Y+ +G + R F LL+LL AS L FIAA + A G L+
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 653 FGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEF 688
GF + D + W Y+ +P+ YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 38/248 (15%)
Query: 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN 192
K+ IL DVS ++ G++ +LG SGKTTLL A++G+++ SG++ +NG
Sbjct: 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75
Query: 193 EFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
Q+ AY+ Q D+ + +TVRETL ++A + R+ I+
Sbjct: 76 PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRV 123
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG-EMMV 311
DV ++ A T +G +V+GISGG+++R++ +++
Sbjct: 124 EDVLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLW 160
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371
P + L +DE ++GLDS T ++V++L Q N ++++ QP + + LFD I+LLS
Sbjct: 161 DPKV-LILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLS 218
Query: 372 DGQIVYQG 379
G+IVY G
Sbjct: 219 SGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 2e-40
Identities = 39/91 (42%), Positives = 57/91 (62%)
Query: 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGT 348
G+E VRGISGG++KR++ E +V A L D + GLDSST I+ +R +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 349 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 4e-40
Identities = 141/562 (25%), Positives = 261/562 (46%), Gaps = 77/562 (13%)
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
L +L++V+G +PG +T L+G +GKTTL+ LAG+ + + G + +G +
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETF 951
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
R + Y Q+D+H ++TVRE+L +SA R KE
Sbjct: 952 ARISGYCEQNDIHSPQVTVRESLIYSA--------------FLRLPKEVS---------- 987
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG-EMMVGPAL 315
+E + D ++++ LD D +VG V G+S Q+KRLT E++ P++
Sbjct: 988 -------KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS-DGQ 374
+FMDE ++GLD+ ++ ++R + T V ++ QP+ + ++ FD+++L+ GQ
Sbjct: 1041 -IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098
Query: 375 IVYQGP----CELVLDFFESM-GF-KCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFI 428
++Y GP ++++FE++ G K E+ + A ++ EV+S + + +
Sbjct: 1099 VIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI--------- 1149
Query: 429 TVQEFSEAFQSFHVGQK---LTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREF 485
+F+E ++S + Q+ L EL TP + A Y FK+ + +++
Sbjct: 1150 ---DFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQ---YSQSTWGQFKSCLWKQW 1203
Query: 486 LLIKR----NSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTT 541
R N + F L AL+ T+F++ + + +D + IGAM+ AV+
Sbjct: 1204 WTYWRSPDYNLVRFFFTLA----AALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVG 1259
Query: 542 FNGMSDISMTVA-KLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIG 600
N S + VA + +FY++R Y A YA+ + +IP ++ + + + Y +
Sbjct: 1260 INNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319
Query: 601 FDPNIGRLFKQLLLLLFINQMASALFRF----IAAAGRNMIVAMSFGSFALVVFFAFGGF 656
F+ + F FI+ + F + + N VA F + +F F GF
Sbjct: 1320 FEWTAAKFF----WFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF 1375
Query: 657 VLSQDDINNGWIWGYWCSPMMY 678
+ + I W+W YW P+ +
Sbjct: 1376 FIPRPKIPKWWVWYYWICPVAW 1397
|
Length = 1470 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 9e-38
Identities = 139/566 (24%), Positives = 263/566 (46%), Gaps = 66/566 (11%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
TIL V+G+ PG + +LGP SGK+TLL ALAG++ + +G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
RT +++Q D+ +TVRETL F + L L +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCS-----------LLRLPK----------------- 171
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG-EMMVGPALA 316
+ QE ++ + + LGL C +T++G+ +RGISGG++KR++ EM++ P+L
Sbjct: 172 ---SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376
L +DE ++GLD++ + +V +L T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 377 YQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEA 436
+ G + +FES+GF + ADFL ++ + Q RE P Q +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVAS 343
Query: 437 FQSFHVGQ-KLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKR----- 490
+ + + K E+ + + +TK + + ++ +L++R
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 491 --NSF--VYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTTFNGMS 546
SF + +F++I A + + L + + +D V D +G +FF ++ F G+
Sbjct: 404 KHESFNTLRVFQVI----AAALLAGLMWWHSDFRD-VQD---RLGLLFF---ISIFWGVF 452
Query: 547 DISMTVAKLP----IFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFD 602
+V P IF K+R Y +Y + + +P+ + +I++ +TY+ G
Sbjct: 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
Query: 603 PNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDD 662
P +G LL+LL ++ L + AA + A + + ++ F GGF + +
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK-- 570
Query: 663 INNGWIWGYWCSPMMYAQNAIVANEF 688
+ + W + S Y+ ++ ++
Sbjct: 571 LPSCMAWIKYISTTFYSYRLLINVQY 596
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-36
Identities = 80/293 (27%), Positives = 128/293 (43%), Gaps = 51/293 (17%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
T L VS ++PG + LLGP +GKTTLL LAG L + SG + G+D+
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 192 NEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
+ + R Y+ Q E+TVRE L F AR G+ R E+
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAE----ERIEE------ 119
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
L++ GL+ ++ VR +SGG K+RL+
Sbjct: 120 ------------------------LLELFGLE-----DKANKKVRTLSGGMKQRLSIALA 150
Query: 310 MVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVIS--LLQPAPETYDLFDDI 367
++ L +DE ++GLD + I LR+ T ++S +L+ E +L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 368 ILLSDGQIVYQGPCELVLDFFESMGFKC--PERKSVADFLQEVTSRKDQRQYW 418
I+L+DG+I+ +G E + + F G PER +A+ L+ + K + +
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-36
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 11/187 (5%)
Query: 1147 MQFLACLWKQHWSYWRNPPYN-AVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSM 1205
Q A L ++ WR+P R + +AL FGT+F ++ T + N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1206 YTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYG 1265
+ ++ F + + PV ER V RE + +YS +Y A++++E+P L+ ++++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1266 VIVYAMIGFEWTAAKFFCL------LYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFS 1319
+IVY M+G + F L L + G+ A+ P+ A+ + L + S
Sbjct: 117 LIVYFMVGLPVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLS 176
Query: 1320 GFVIPRP 1326
GF IP
Sbjct: 177 GFFIPVD 183
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 8e-36
Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 123 FFNSIHILTTKKKH-LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVS 181
+ +I T K + + ILKD SG++KPG M L+LG P SG +TLL ALA + + ++ V
Sbjct: 5 SWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE 64
Query: 182 GRVTYNGHDMNEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 227
G + YNG EF Y+S+ DVH +TVRETL F+ RC+G
Sbjct: 65 GDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-32
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 38/226 (16%)
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGNIT 882
G K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIH 68
Query: 883 ISGYPKKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEI 940
+G P K+ E + Y + D+H P +TV E+L ++ LR +
Sbjct: 69 YNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA--LRCKGN------------- 113
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA-AI 999
E V G+S +RKR++IA LV+ S++ D T GLD+ A I
Sbjct: 114 -EFV---------------RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157
Query: 1000 VMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
+ T +++Q S +I++ FD++ ++ G++IY G
Sbjct: 158 LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT- 894
++ +S G + L+G +GAGKTT + +L G R T SG I+GY + +
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 895 -RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
+ GYC Q D +TV E L + A RL+ SE K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYA--RLKGLPKSE-IKEEVELLLRVLGLTDKANKR 130
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
LS +++L++A+ L+ PS++ +DEPTSGLD + + + + GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRS 184
Query: 1014 VVCTIHQPSIDIFEAF-DELFLMKRG 1038
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 5e-30
Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 826 KLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI 883
+L+ + + K L+GVS PG+ L+G +GAGKTTLM +LA SG I I
Sbjct: 2 QLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS--SGTIRI 58
Query: 884 SGYP--KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
G K+ + R GY Q P TV E L Y AWL+ + S+ K ++E++
Sbjct: 59 DGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVL 115
Query: 942 ELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
ELV L + +G LS R+R+ IA LV +PSI+ +DEPT+GLD I
Sbjct: 116 ELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRF 169
Query: 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
R + + + R V+ + H D+ +++ ++ +G
Sbjct: 170 RNLLSELGEDRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
K +LK+VSG KPG +T ++GP +GK+TLL ALAG+ + L VSG V NG +
Sbjct: 17 PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPL 75
Query: 192 NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 228
++ ++ Y+ Q D+ +TVRETL F+A+ +G+
Sbjct: 76 DKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-28
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 693 WRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKP 752
W K + S E+LG VLKSRG F A+WYWIG+GA++GF +LFNI FTL+LT+LN K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 753 QAVI 756
QA++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 23/210 (10%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET---F 893
L+ +S + G ++G +G+GK+TL+ +L G G SG + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 894 TRISGYCEQNDIHSP---LV--TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP 948
R G QN P TV E + + E + E R +EE +ELV L+
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ +K
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 1009 ETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
G+T++ H + E D + +++ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-27
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 59/203 (29%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR 895
L+ VS + G + AL+G +G+GK+TL+ +AG SG I I G +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAK----- 65
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
+ L+ LR+ +
Sbjct: 66 ------------------------------------------------LPLEELRRRIGY 77
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1015
+P LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ ++ E GRTV+
Sbjct: 78 VPQ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVI 134
Query: 1016 CTIHQPSIDIFEAFDELFLMKRG 1038
H P A D + ++K G
Sbjct: 135 IVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 31/217 (14%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG-----YPKKQ 890
+L+ +S + G +T ++G +G+GK+TL+ LAG SG + + G K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE 73
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLL-----YSAWLRLRTEVDSETRKMFIEEIMELVE 945
+ Y Q+ +TVYE +L + ++ D E +EE +EL+
Sbjct: 74 --LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLG 127
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
L+ L V LS +R+R+ IA L I+ +DEPTS LD V+ ++
Sbjct: 128 LEHLADRPV-----DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182
Query: 1006 N-TVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
+ E G TVV +H D+ A D L L+K G
Sbjct: 183 DLNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L VS +PG A++G +GAGK+TL+ + G + T SG+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 896 ISGYCEQN---DIHSPLVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQ 951
I GY Q D P ++V + +L + S+ K ++E +E V L L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD 127
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + ++ G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 1012 RTVVCTIHQPSIDIFEAFDELFLMKRG 1038
T++ H + + E FD + L+ R
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 21/227 (9%)
Query: 821 MPKEMKLKG--VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS 878
M ++++ V +L +S + G +TAL+G +GAGK+TL+ + G S
Sbjct: 1 MMPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SS 58
Query: 879 GNITISGYPKKQETFTRISGYCEQNDIHSPL--VTVYE---SLLYSA--WLRLRTEVDSE 931
G I I G P ++ GY Q +TV + Y W R + D E
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 932 TRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991
++E +E V ++ LR +G LS Q++R+ +A L NP ++ +DEP +G
Sbjct: 119 K----VDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169
Query: 992 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+D + +K + G+TV+ H + + FD + + R
Sbjct: 170 VDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 25/223 (11%)
Query: 825 MKLKGVHED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-G 879
++LKG+ + + L+ +S PG AL+G SG GKTTL+ ++AG R G I
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 880 NITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEE 939
++G P ++ I G Q+ P +TV E++ + L+LR +E R + E
Sbjct: 61 GRDVTGVPPER---RNI-GMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRAR-VRE 113
Query: 940 IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
++ELV L+ L LS Q++R+ +A L PS++ +DEP S LDA+
Sbjct: 114 LLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 1000 VMRTVKNT-VETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
+ +K E G T + H D EA D + +M G
Sbjct: 169 LREELKELQRELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 4e-22
Identities = 70/228 (30%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 826 KLKGVH------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI 877
+LK + +K+ L GVS + G A++G SG+GK+TL+++L G R T G +
Sbjct: 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61
Query: 878 S-GNITISGYPKKQETFTR---ISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSE 931
IS +K+ R I G+ Q+ + P +T E++ L L E
Sbjct: 62 RVDGTDISKLSEKELAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAGVPKKE 116
Query: 932 TRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991
R+ EE++E V L L P E LS Q++R+ IA L +P II DEPT
Sbjct: 117 RRER-AEELLERVGLG---DRLNHYPSE--LSGGQQQRVAIARALANDPKIILADEPTGN 170
Query: 992 LDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
LD+ VM ++ E G T+V H P ++ E D + ++ G
Sbjct: 171 LDSETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 8e-22
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 14/128 (10%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
K +L ++SG +KPG +T L+G +GKTTLL LAG+ + + ++G + NG +
Sbjct: 15 VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPL 73
Query: 192 NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG----SRYDMLTELARREKEAGI 247
++ QR+ Y+ Q DVH +TVRE L FSA +G+ R + ELA
Sbjct: 74 DKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAA------- 125
Query: 248 KPD-LFID 254
KP LF+D
Sbjct: 126 KPSILFLD 133
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 93.6 bits (234), Expect = 8e-22
Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 53/205 (25%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYP--KKQETF 893
L+ +S G + L+G +GAGKTTL+ ++ G + SG I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
G ++RL +A L+ +P ++ +DEPTSGLD + ++ + G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1014 VVCTIHQPSIDIFEAFDELFLMKRG 1038
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-21
Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 55/223 (24%)
Query: 825 MKLKGVHED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-G 879
++LK V + + +LN VS G + AL+G SG+GK+TL+ +AG G I
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 880 NITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEE 939
++ + R G Q+ P +TV E++
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL--------------------- 99
Query: 940 IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
GLS Q++R+ +A L +P ++ +DEPTS LD
Sbjct: 100 ---------------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1000 VMRTVKNTVET-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
V +K+ G TVV H D+ EA D + +++ G
Sbjct: 139 VRALLKSLQAQLGITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 61/258 (23%)
Query: 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN 192
KK + D+S + G + LLG +GKTT L L G+L + SG NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIR 67
Query: 193 EFVPQRTAA-----YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 68 T---DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 248 KPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG 307
E + L+VLGL A+ +SGG K++L+
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 308 EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI----SLLQPAPETYDL 363
++G L +DE ++GLD ++ I + + + G ++I S+ E L
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMD----EAEAL 198
Query: 364 FDDIILLSDGQIVYQGPC 381
D I ++SDG++ G
Sbjct: 199 CDRIAIMSDGKLRCIGSP 216
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 21/223 (9%)
Query: 826 KLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNIT 882
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 883 ISGYPKKQET-FTRIS-GYCEQNDIHSPLV---TVYESLLYSAWLRLRTEVDSETRKMFI 937
++ +K+ R G+ QN L+ TV E++ + + RK
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN---FNLLPDLTVLENVELPLLIAG---KSAGRRKRAA 122
Query: 938 EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
EE++E++ L+ L P E LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 123 EELLEVLGLEDRL--LKKKPSE--LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 998 AIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039
V+ ++ E G+T++ H P ++ + D + +K G
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 8e-21
Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKK 889
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
+ R Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV- 1008
+ LS +R+R+ +A L P I+ +DEPTS LD ++ ++
Sbjct: 91 ADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1009 ETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039
E G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPK 888
++ +L+ +S G + AL G +GAGKTTL +LAG +++ G I ++G P
Sbjct: 9 YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL----LNGKPI 64
Query: 889 KQETFTRISGYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK 947
K + + GY Q+ D +V E LL + + E +++ ++L
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGL-------KELDAGNEQAETVLKDLDLY 117
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
L++ P LS Q++RL IA L++ ++ DEPTSGLD + V ++
Sbjct: 118 ALKERH---PLS--LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL 172
Query: 1008 VETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
G+ V+ H D FL K + + +
Sbjct: 173 AAQGKAVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 2e-20
Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 62/247 (25%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
L D+S IK G L++GP SGK+TLL L G L SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKE 72
Query: 198 --RTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
R + Q+ D TV E +AF G+ ++ R +EA
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEI----EERVEEA--------- 118
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV-GP 313
L+++GL+ D +SGGQK+R+ ++ P
Sbjct: 119 --------------------LELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDP 153
Query: 314 ALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL------FDDI 367
+ L +DE + GLD + ++ L++ + T +I T+DL D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LKAEGKTIIIV-------THDLDLLLELADRV 204
Query: 368 ILLSDGQ 374
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 5e-20
Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 33/228 (14%)
Query: 827 LKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISG 879
L+G+ + VL GV R G + A++G SG+GK+TL+ ++ G R G I G
Sbjct: 3 LRGLTKSFGGRTVL-KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61
Query: 880 NITISGYPKKQETFTRISGYCEQNDIHSPL---VTVYESLLYSAWLRLRTEVDSETRKMF 936
+ R G Q L +TV+E++ + LR E ++
Sbjct: 62 EDISGLSEAELYRLRRRMGMLFQ---SGALFDSLTVFENVAF--PLR-------EHTRLS 109
Query: 937 IEEIMELVELKPLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991
EEI E+V K L VGL G + LS +KR+ +A L +P ++ DEPT+G
Sbjct: 110 EEEIREIVLEK-LE--AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 992 LDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
LD A+ ++ +++ + G T + H F D + ++ G
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 5e-20
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK-- 888
+ D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 889 -KQETFTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
E + + + QN P + T+ E++ L S+ I ++
Sbjct: 388 LSPEAWRKQISWVSQN----PYLFAGTIRENI------LLARPDASDEE---IIAALDQA 434
Query: 945 ELKPLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
L GL +GLS Q +RL +A L++ S++ +DEPT+ LDA I
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494
Query: 1000 VMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+++ ++ + +TV+ H+ D +A D + ++ G
Sbjct: 495 ILQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 9e-20
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 18/222 (8%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890
+ + L VS G L+G +G+GK+TL+ +L G SG + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 891 ETFT----RISGYCEQNDIHSPLV-TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
E + G QN TV + + + L E + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVG 127
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
L+ L LS Q++R+ IA L P I+ +DEPT+GLD + ++ +K
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1006 NTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046
E G+T++ H + E D + ++ G+ + G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 3e-19
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 28/199 (14%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYP- 887
++GV+ R G + +G +GAGKTT + +L R T SG ++GY
Sbjct: 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT----SGTARVAGYDV 57
Query: 888 -KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW--LRLRTEV----DSETRKMFIEEI 940
++ R G Q +V E L + L + + E + EE+
Sbjct: 58 VREPRKVRRSIGIVPQY------ASVDEDL--TGRENLEMMGRLYGLPKDEAEER-AEEL 108
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
+EL EL VG S R+RL IA L+ P ++F+DEPT+GLD R +
Sbjct: 109 LELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163
Query: 1001 MRTVKNTVETGRTVVCTIH 1019
++ E G T++ T H
Sbjct: 164 WDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 4e-19
Identities = 33/86 (38%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISL 353
RG+SGG++KR++ +V LF+DE ++GLDSS+ +++ LR+ + T + S+
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR-LADTGRTIICSI 168
Query: 354 LQPAPETYDLFDDIILLSDGQIVYQG 379
QP+ E ++LFD ++LLS G+++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 4e-19
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 33/205 (16%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY------PKKQE 891
L VS + PG AL+G SGAGK+TL+ L G SG++ I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 892 TFTRISGYCEQNDIHSPLV---TVYESLL---------YSAWLRLRTEVDSETRKMFIEE 939
R G Q L+ +V E++L + + L + E ++
Sbjct: 75 QLRRQIGMIFQ---QFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK--EEKQRAL--A 127
Query: 940 IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
+E V L LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 128 ALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1000 VMRTVKN-TVETGRTVVCTIHQPSI 1023
VM +K E G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 8e-19
Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 31/242 (12%)
Query: 821 MPKEMKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGY 876
++++ V + ++ +S + G L+G SG GKTTL+ ++AG + + G
Sbjct: 2 PKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61
Query: 877 IS-GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKM 935
I I+ P ++ R G Q+ P +TV E++ + L++R ++ K
Sbjct: 62 ILLDGEDITDVPPEK----RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKA 115
Query: 936 FIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+EE +ELV L+ LS Q++R+ +A LV P ++ +DEP S LDA+
Sbjct: 116 RVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170
Query: 996 AAAIVMRTVKN-TVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYV 1044
+ + +K E G T V H D EA D + +M G +EIY
Sbjct: 171 LREQMRKELKELQRELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226
Query: 1045 GP 1046
P
Sbjct: 227 RP 228
|
Length = 352 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 72/256 (28%), Positives = 110/256 (42%), Gaps = 52/256 (20%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
IL D+S I G +T +LGP SGK+TLL LAG L SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 198 ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
+ AY+ Q +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
+ +E + + L++LGL+ AD V + +SGG+++R +++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQR-----VLIARA 152
Query: 315 LA-----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369
LA L +DE ++ LD + ++ LR ++ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLIL 211
Query: 370 LSDGQIVYQGPCELVL 385
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-18
Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 24/209 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT- 894
+ GVS R G + L+G +GAGKTT + +L + T SG T++G+ +E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT----SGRATVAGHDVVREPREV 71
Query: 895 -RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
R G Q+ +T +E+L A L V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GR 1012
V S R+RL IA LV P ++F+DEPT GLD + A V ++ E G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1013 TVVCTIHQPSIDIFEA---FDELFLMKRG 1038
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 3e-18
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 32/199 (16%)
Query: 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQ- 890
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 891 ------ETFTRISGYCEQNDIHSPLVTVYESLL--------YSAWLRLRTEVDSETRKMF 936
TF + E TV E+++ L + E R+
Sbjct: 73 ARLGIGRTFQIPRLFPEL--------TVLENVMVAAQARTGSGLLLARARREEREARER- 123
Query: 937 IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178
Query: 997 AAIVMRTVKNTVETGRTVV 1015
+ ++ E G TV+
Sbjct: 179 TEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 5e-18
Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 47/260 (18%)
Query: 794 TQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTAL 853
+ K + LP + F++V++ D +L +S PG A+
Sbjct: 456 QEGDKTLIHLPKLQGEIEFENVSFR-----------YGPDDPPVLEDLSLEIPPGEKVAI 504
Query: 854 MGVSGAGKTTLMDVLAGRKTGGY--ISGNITISGYPKKQ---ETFTRISGYCEQNDIHSP 908
+G SG+GK+TL+ +L G Y G I + G + R GY Q+
Sbjct: 505 VGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP---- 556
Query: 909 LVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GES 960
L+S +R + E EEI+E +L + + LP GE
Sbjct: 557 -------FLFSGSIRENIALGNPEAT---DEEIIEAAQLAGAHEFIENLPMGYDTPVGEG 606
Query: 961 G--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1018
G LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+
Sbjct: 607 GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIA 665
Query: 1019 HQPSIDIFEAFDELFLMKRG 1038
H+ S + D + ++ +G
Sbjct: 666 HRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 82.4 bits (205), Expect = 5e-18
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 69/234 (29%)
Query: 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869
+ F +V++S +L VS +PG A++G SG+GK+TL+ +L
Sbjct: 1 IEFKNVSFSYP-----------GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 870 G--RKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924
T SG I I G + E+ + Y Q + L+S +R
Sbjct: 50 RLYDPT----SGEILIDGVDLRDLDLESLRKNIAYVPQ-----------DPFLFSGTIR- 93
Query: 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIF 984
E I LS QR+R+ IA L+ +P I+
Sbjct: 94 -------------ENI---------------------LSGGQRQRIAIARALLRDPPILI 119
Query: 985 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+DE TS LD A+++ ++ + G+TV+ H+ S D + ++ G
Sbjct: 120 LDEATSALDPETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 6e-18
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP--KKQETFTR-IS 897
VS G +T L+G +GAGKTTL+ ++A SG +TI G + R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
+ +++ L T E+L Y A L + + + R I E+ + ++L VG
Sbjct: 79 VLFGERGLYARL-TARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG-- 132
Query: 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1017
ST ++++ IA LV +PSI+ +DEPTSGLD R +K GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 1018 IH 1019
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 7e-18
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 16/195 (8%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPK 888
+ +L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 889 KQETFTRIS-GYCEQN---DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
K R G Q+ + + V + + + L L R+ + E + V
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAV 115
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +
Sbjct: 116 GASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 1005 KNTVETGRTVVCTIH 1019
+ G TVV + H
Sbjct: 171 RRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY---PKKQET 892
++GVS +PG +T L+G +GAGKTT + +LAG +G T+ G+ + E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 893 FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS 952
R+ G+ + +T E+L Y A L + R +EE+ + + ++ L
Sbjct: 77 RRRL-GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADRLGMEELLDR 132
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1012
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + ++ G+
Sbjct: 133 RVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187
Query: 1013 TVVCTIH 1019
++ + H
Sbjct: 188 CILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 29/237 (12%)
Query: 826 KLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG 885
L V+ + L ++ PG A++G SGAGK+TL+ + SG+I + G
Sbjct: 6 NLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEG 63
Query: 886 YP------KKQETFTRISGYCEQNDIHSPLVTVYESLL---------YSAWLRLRTEVDS 930
KK R G Q+ +TV E++L + + L +E D
Sbjct: 64 TDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED- 122
Query: 931 ETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990
K +E V L LS Q++R+ IA L P +I DEP +
Sbjct: 123 ---KERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIA 174
Query: 991 GLDARAAAIVMRTVKN-TVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046
LD + + VM +K E G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 175 SLDPKTSKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-17
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 12/190 (6%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYISGN-ITISGYPKKQETFT 894
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 895 RIS-GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
R G Q+ P VYE++ ++ EV + + + +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA------LEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
LP + LS +++R+ IA +V +P+I+ DEPT LD +M +K + G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1014 VVCTIHQPSI 1023
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 34/181 (18%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYISGNITISGYPKKQETFT 894
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 895 RIS-----GYCEQNDIHSPLV---TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
+ G Q P ++Y+++ Y LRL E E+ E VE
Sbjct: 76 VLELRRRVGMVFQ----KPNPFPGSIYDNVAYG--LRLHGIKLKE-------ELDERVE- 121
Query: 947 KPLRQSLVGLPGE-------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
+ LR L E GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 EALR--KAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 1000 V 1000
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 13/217 (5%)
Query: 829 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITIS 884
+ L+ VS + + G L+G SG+GK+TL + G + T G G +
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLK 71
Query: 885 GYPKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIME 942
+ ++ + Q+ + S P +T+ E + + E RK + ++
Sbjct: 72 LSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLV 130
Query: 943 LVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1002
V L + P E LS QR+R+ IA L NP ++ DEPTS LD A ++
Sbjct: 131 GVGLPEEVLNR--YPHE--LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD 186
Query: 1003 TVKN-TVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+K E G T++ H + A D + +M G
Sbjct: 187 LLKKLQEELGLTLLFITHDLGVVAKIA-DRVAVMYAG 222
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 5e-17
Identities = 67/222 (30%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+L D++ + +L+GVS PG A++G SG+GK+TL+ L
Sbjct: 334 TLELRDLSAG------------YPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATL 381
Query: 869 AGRKTGGYISGNITISGYP---KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925
AG + G +T+ G P Q+ R C Q D H TV E+L + R
Sbjct: 382 AGLLDP--LQGEVTLDGVPVSSLDQDEVRRRVSVCAQ-DAHLFDTTVRENLRLA-----R 433
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLV-GLP---GESG--LSTEQRKRLTIAVELVAN 979
+ E + +E V L ++L GL GE G LS +R+RL +A L+A+
Sbjct: 434 PDATDEE----LWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLAD 489
Query: 980 PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1021
I+ +DEPT LDA A ++ + +GRTVV H
Sbjct: 490 APILLLDEPTEHLDAETADELLEDL-LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 45/244 (18%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+ F +V++S ++ L+ VS R G A++G G+GK+TL+ +L
Sbjct: 2 RIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL 50
Query: 869 AGRKTGGYI--SGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 923
AG Y SG++ + G +Q R GY Q D+ T+ +++ A
Sbjct: 51 AGL----YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA--- 102
Query: 924 LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GESG--LSTEQRKRLTIAV 974
D E I+ EL + + P GE G LS QR+ + +A
Sbjct: 103 --PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153
Query: 975 ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL 1034
L+ +P I+ +DEPTS +D + + ++ + +T++ H+PS+ + D + +
Sbjct: 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLL--DLVDRIIV 210
Query: 1035 MKRG 1038
M G
Sbjct: 211 MDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 8e-17
Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 27/225 (12%)
Query: 824 EMKLKGVHED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS- 878
E++LK V + +L V+ G L+G SG GK+TL+ ++AG T G I
Sbjct: 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 879 GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIE 938
++ P ++ R QN P +TVYE++ + L+LR +E K ++
Sbjct: 63 DGRDVTDLPPEK----RGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VK 115
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
E+ +L+ L+ L LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 116 EVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LR 169
Query: 999 IVMRTVKNTV--ETGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1038
++MR+ + G T + H D EA D + +M G
Sbjct: 170 VLMRSEIKKLHERLGTTTIYVTH----DQVEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 21/207 (10%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--SGNITISGYPKKQE---T 892
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 893 FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS 952
R+ +Q + L +V ++L Y A L + ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTLDLDL-SVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-G 1011
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + V+ G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1012 RTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-16
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 34/231 (14%)
Query: 802 VLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 861
V SL F V+ + + L VS PG AL+G SGAGK
Sbjct: 314 VTAAPAPSLEFSGVSVAY------------PGRRPALRPVSFTVPPGERVALVGPSGAGK 361
Query: 862 TTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLY 918
+TL+++L G T G I+ + ++ +++ + Q+ P + ++
Sbjct: 362 STLLNLLLGFVDPTEGSIAVNGVPLADAD--ADSWRDQIAWVPQH----PFL-FAGTIAE 414
Query: 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL-VGL-----PGESGLSTEQRKRLTI 972
+ +RL S+ I E +E L +L GL G +GLS Q +RL +
Sbjct: 415 N--IRLARPDASDAE---IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLAL 469
Query: 973 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
A + + ++ +DEPT+ LDA A V+ + + GRTV+ H+ ++
Sbjct: 470 ARAFLRDAPLLLLDEPTAHLDAETEAEVLEAL-RALAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 847 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQ---ETFTRISGYCE 901
+T + G SGAGK+TL+ +AG + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 902 QNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961
Q P + V E+L + L+ + + E ++ ++E+++L+ L L
Sbjct: 82 QQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNRYPA-----Q 131
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1021
LS +++R+ +A L A P ++ +DEP S LD ++ +K + ++ P
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NLNIP 184
Query: 1022 SIDIFEAFDELFLM 1035
I + E +
Sbjct: 185 VIFVTHDLSEAEYL 198
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 2e-16
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 24/206 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L +S + G AL+G SG GK+TL+ ++AG R T SG + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR 75
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
GY Q D P +TV +++ L L+ +E R+ EE++ELV L +
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEARER-AEELLELVGLSGFENAY-- 128
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTV 1014
P + LS R+R+ +A L +P ++ +DEP S LDA + + + ETG+TV
Sbjct: 129 -PHQ--LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTV 185
Query: 1015 VCTIHQPSIDIFEAF---DELFLMKR 1037
+ H DI EA D + ++
Sbjct: 186 LLVTH----DIDEAVFLADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 24/216 (11%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQ 890
+ +L ++ + G A++G SG GK+TL+ ++AG + T SG + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT----SGEVLLDGRPVTG 69
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
GY Q D P +TV +++ L LR + +E R+ +E++ELV L
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVALG--LELRGKSKAEARER-AKELLELVGLAGFE 124
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-E 1009
P + LS R+R+ IA L P ++ +DEP LDA + + E
Sbjct: 125 DKY---PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 1010 TGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEI 1042
T +TV+ H D+ EA D + ++ I
Sbjct: 180 TRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-16
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 43/217 (19%)
Query: 826 KLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGN 880
+++GV D+++L +GV G + A++G SG+GK+TL+ ++ G R G
Sbjct: 10 EVRGVTKSFGDRVIL-DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD----KGE 64
Query: 881 ITISGY-------PKKQETFTRISGYCEQNDIHSPL---VTVYESLLYSAWLRLRTEVDS 930
I I G + E R+ G Q L +TV+E++ + LR
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRM-GVLFQ---QGALFSSLTVFENVAF----PLR----- 111
Query: 931 ETRKMFIEEIMELVELKPLRQSLVGLPGE------SGLSTEQRKRLTIAVELVANPSIIF 984
E K+ I ELV +K LVGL G S LS RKR+ +A + +P ++F
Sbjct: 112 EHTKLPESLIRELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 985 MDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQ 1020
+DEPTSGLD +A ++ ++ + G TV+ H
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-16
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 33/201 (16%)
Query: 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-SGNITISGYPKKQ- 890
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 891 ------ETFTRISGYCEQNDIHSPLVTVYESLL--------YSAWLRLRTEVDSETRKMF 936
TF Q P +TV E++ S L E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 937 I-EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 996 AAAIVMRTVKN-TVETGRTVV 1015
+ ++ G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 48/258 (18%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTYNGHDMNEFV 195
LKDVS I+ G LL+GP SGK+TLL L G L + + V G T + + E
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78
Query: 196 PQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
+ + Q+ D + TV + +AF L L +E
Sbjct: 79 --QKVGLVFQNPDDQLFGPTVEDEVAF------------GLENLGLPREE---------- 114
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT-TGEMMVGP 313
++ E L+++GL+ D + SGGQK+R+ G + +GP
Sbjct: 115 --IEERVAE----------ALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMGP 157
Query: 314 ALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373
+ L +DE + GLD ++ L++ + G +I + + D +++L DG
Sbjct: 158 EI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215
Query: 374 QIVYQGPCELVLDFFESM 391
+I+ G + + E +
Sbjct: 216 KILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 27/199 (13%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETF 893
VL +G+S G L G +G+GKTTL+ ++AG G I
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK-------LDGGDIDD 68
Query: 894 TRISGYC----EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
++ C +N + L TV E+L + W ++ I +E V L PL
Sbjct: 69 PDVAEACHYLGHRNAMKPAL-TVAENLEF--WAAFLG-----GEELDIAAALEAVGLAPL 120
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ ++ +
Sbjct: 121 ----AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA 175
Query: 1010 TGRTVVCTIHQPSIDIFEA 1028
G V+ H P + + A
Sbjct: 176 QGGIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 73/274 (26%), Positives = 116/274 (42%), Gaps = 62/274 (22%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+LKDV+ I+ G +LLGP GK+TLL +AG + + SG + +G D+ + P+
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 198 -RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
R A + Q+ MTV E +AF + +GV E+ +R KE
Sbjct: 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKA-----EIDKRVKEV----------- 117
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
K+LGL+ + +SGGQ++R+ +V
Sbjct: 118 ------------------AKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKV 154
Query: 317 LFMDE-ISNGLDSSTTFHIVNSLR---QNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372
+DE +SN LD + +R + +H GT I + E L D I++++D
Sbjct: 155 FLLDEPLSN-LD----AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209
Query: 373 GQIVYQG-PCELVLDFFESMGFKCPERKSVADFL 405
G+I G P EL ++ P VA F+
Sbjct: 210 GRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 19/231 (8%)
Query: 827 LKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNIT-I 883
L + L V+ G + A++G SGAGK+TL+ L G T G I N I
Sbjct: 9 LSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQI 68
Query: 884 SGYPKKQETFTRIS-GYCEQNDIHSPLVTVYESLL------YSAWLRLRTEVDSETRKMF 936
+ K+ R G Q P ++V E++L S W L E +
Sbjct: 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA 128
Query: 937 IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
++ + + L Q S LS Q++R+ IA LV P II DEP + LD +
Sbjct: 129 LDALERVGILDKAYQR------ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPES 182
Query: 997 AAIVMRTVKN-TVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046
A VM +K+ E G TV+ +HQ +D+ + + + + + G+ ++ GP
Sbjct: 183 AKKVMDILKDINQEDGITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 2e-15
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 29/202 (14%)
Query: 826 KLKGVH--EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS--- 878
+++ ++ K +L GVS G + AL+G +GAGKTTL+ + G G I
Sbjct: 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61
Query: 879 GNITISGYPKKQETFTRIS---GYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSETRK 934
+IT R GY + I L TV E+LL A+ R R + +
Sbjct: 62 RDIT------GLPPHERARAGIGYVPEGRRIFPEL-TVEENLLLGAYARRRAKRKAR--- 111
Query: 935 MFIEEIMELV-ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
+E + EL LK R+ L G LS +++ L IA L++ P ++ +DEP+ GL
Sbjct: 112 --LERVYELFPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLA 164
Query: 994 ARAAAIVMRTVKNTVETGRTVV 1015
+ + ++ + G T++
Sbjct: 165 PKIVEEIFEAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L+ +S + G + +G +GAGKTT M ++ G + G I+ Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
I E + P +T E+L A L RK I+E++++V LK + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGI-------RKKRIDEVLDVVGLKDSAKKKVK 125
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1015
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + + G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1016 CTIHQ 1020
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITISGYPKKQE 891
V+L+ ++ G + A++G SG+GK+TL++++ + G Y++G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 892 TFTRIS-GYCEQNDIHSPLV---TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK 947
F R GY QN L+ TV E+L L L+ + S+ K E+ E +E
Sbjct: 72 KFRREKLGYLFQN---FALIENETVEENLD----LGLKYKKLSKKEKR--EKKKEALEKV 122
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
L L E LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 123 GLNLKLKQKIYE--LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 1008 VETGRTVVCTIHQPSI 1023
+ G+T++ H P +
Sbjct: 181 NDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 4e-15
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 15/176 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS---GNITISGYPKKQET 892
++ VS R G L+G SG+GK+TL +LAG + G I ++ ++G ++
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 893 FTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
+ Q+ S P +TV + L LR+ R+ + E++ELV L P
Sbjct: 367 RRIQMVF--QDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
+ L P E LS QR+R+ IA L P ++ +DEP S LD A V+ +K+
Sbjct: 421 EFLDRYPHE--LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474
|
Length = 539 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 5e-15
Identities = 65/213 (30%), Positives = 108/213 (50%), Gaps = 20/213 (9%)
Query: 820 DMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGY 876
++ K K + V ED VS G + L+G +GAGKTT ++ G R G
Sbjct: 8 NLAKAYKGRRVVED-------VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 877 ISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMF 936
I + IS P I GY Q ++VY++L+ A L++R ++ +E R+
Sbjct: 61 IIDDEDISLLPLHARARRGI-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDR 117
Query: 937 IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
E+ME ++ LR S+ G+S LS +R+R+ IA L ANP I +DEP +G+D +
Sbjct: 118 ANELMEEFHIEHLRDSM----GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172
Query: 997 AAIVMRTVKNTVETGRTVVCTIH--QPSIDIFE 1027
+ R +++ ++G V+ T H + ++ + E
Sbjct: 173 VIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 22/211 (10%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----SGNITISGYPKKQETF 893
L+ +S + G + L+G +GAGKTT + ++ G I SG + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
RI GY + P + V + L+Y A +L+ E R+ I+E +E +EL
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLA--QLKGLKKEEARRR-IDEWLERLELSEYANKR 125
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
V LS ++++ ++ +P ++ +DEP SGLD ++ ++ G+T
Sbjct: 126 V-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 1014 VVCTIHQPSIDIFEAF-DELFLMKRGGQEIY 1043
V+ + HQ +++ E D + L+ +G +Y
Sbjct: 181 VILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 6e-15
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 57/209 (27%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQ---E 891
+L VS + PG A++G SG+GK+TL ++ G R T SG + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPN 72
Query: 892 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
GY Q+D ++F I E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1012 RTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 7e-15
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 824 EMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNI 881
E + + L + +S G + G +GAGKTTL+ +LAG R G +
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YW 61
Query: 882 TISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
+E++ + Y +T E+L + W R ++ T I E +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEAL 115
Query: 942 ELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
V L L VG LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 116 AQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 1002 RTVKNTVETGRTVVCTIHQP 1021
+ G V+ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 69/272 (25%), Positives = 110/272 (40%), Gaps = 52/272 (19%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
L DV+ + G + LLGP SGK+TLL +AG L+ SGR+ NG D +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 198 -RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
R ++ QH +TVR+ +AF E+ + K
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
+KA E L+++ L +GD +SGGQ++R+ +
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376
L +DE LD+ + + LR+ ++ T V + E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 377 YQGPCELVLDFFESMGFKCPERKSVADFLQEV 408
G + V D P V FL EV
Sbjct: 211 QIGSPDEVYDH--------PANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 71/281 (25%), Positives = 108/281 (38%), Gaps = 69/281 (24%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM----NEFV 195
L D+S IK G + LLGP +GK+TLL +AG +GR+ NG + N V
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAV 74
Query: 196 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
R ++ QH MTV + +AF + + R EA I+
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVR------------KERPSEAEIRA------ 116
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
+ L + + D +SGGQ++R + + AL
Sbjct: 117 --RVEEL-----------------LRLVQLEGLADRYPAQLSGGQRQR-----VALARAL 152
Query: 316 A-----LFMDEISNGLDSSTTFHIVNSLRQ---NIHILNGTAVISLLQPAPETYDLFDDI 367
A L +DE LD + LR+ +H G + + E +L D +
Sbjct: 153 AVEPKVLLLDEPFGALD----AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRV 208
Query: 368 ILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEV 408
++L+ G+I GP + V D P + VA FL EV
Sbjct: 209 VVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 21/221 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSE-TRKMFIEEIMELVELKPLRQSLV 954
G+ Q+ P +TV +++ + L++R E SE + +EE++ LV+L+ L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFG--LKVRKERPSEAEIRARVEELLRLVQLEGLADR-- 133
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV--ETGR 1012
P + LS QR+R+ +A L P ++ +DEP LDA+ +R + G
Sbjct: 134 -YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK-ELRRWLRKLHDRLGV 189
Query: 1013 TVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGP 1046
T V H + E D + ++ +G E+Y P
Sbjct: 190 TTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 16/187 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITISGYPKKQETF 893
+NGVS + + G + L+G +GAGKTT ++ G + G + G I+ P +
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQ-DITKLPMHKRAR 74
Query: 894 TRISGYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS 952
I GY Q I L TV E++L A L +R + + R+ +EE++E + LR+S
Sbjct: 75 LGI-GYLPQEASIFRKL-TVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRKS 129
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1012
S LS +R+R+ IA L NP + +DEP +G+D A + + +K + G
Sbjct: 130 KA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI 184
Query: 1013 TVVCTIH 1019
V+ T H
Sbjct: 185 GVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 57/172 (33%), Positives = 79/172 (45%), Gaps = 21/172 (12%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISG--Y 886
+ LN VS G ++G SG+GK+TL +LAG + + SG+I + G
Sbjct: 16 GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPL 71
Query: 887 PKKQET--FTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIME 942
K+ F R Q+ S P TV L S LR S+ R I E+++
Sbjct: 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQR---IAELLD 126
Query: 943 LVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
V L P L P E LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 127 QVGLPPSF--LDRRPHE--LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 56/262 (21%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
ILK V+ +K G + ++GP SGK+TL +AG S SG + + G D+ E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 199 TAA---YIS-QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL--F 252
A +++ Q+ I ++ E L + ARR DL F
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSARGEEPLDLLDF 119
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV- 311
+ + A G + L ++ G SGG+KKR +M +
Sbjct: 120 LKLLKAKLALLGMDEEFLNRS------VNE------------GFSGGEKKRNEILQMALL 161
Query: 312 GPALALFMDEISNGLDSSTT---FHIVNSLRQN----IHILNGTAVISLLQPAPETYDLF 364
P LA+ +DEI +GLD +N LR+ + I + +++ ++P
Sbjct: 162 EPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP-------- 212
Query: 365 DDIILLSDGQIVYQGPCELVLD 386
D + +L DG+IV G EL +
Sbjct: 213 DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 34/217 (15%)
Query: 826 KLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGN 880
++K +H E K +L GV+ + G + A+MG +G+GK+TL + G Y G
Sbjct: 5 EIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGE 62
Query: 881 ITISGYPKKQETFTRISGYCE----------QNDIHSPLVTVYESLLYSAWLRLRTE--V 928
I G E +S E Q + P VT L +A R +
Sbjct: 63 ILFDG-----EDILELSPD-ERARAGIFLAFQYPVEIPGVTN-SDFLRAAMNARRGARGI 115
Query: 929 DSETRKMFIEEIMELVELKP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986
E K ++E EL+ L L + + E G S ++KR I L+ P + +D
Sbjct: 116 LPEFIK-ELKEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAILD 169
Query: 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
EP SGLD A IV + E GR V+ H +
Sbjct: 170 EPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 67/267 (25%), Positives = 105/267 (39%), Gaps = 73/267 (27%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
LKDVS I PG L+GP +GK+TLL L G ++ + SG V +G D+N+ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 198 --RTA----AYISQHDVHIGEMTVRET-----LAFSARCQGVGSRYDMLTELARREKEAG 246
R I Q I ++V E L + + + + + EK+
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP------KEEKQRA 125
Query: 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTT 306
+ L+ +GL A D++ SGGQ++R
Sbjct: 126 L-------------------------AALERVGLLDKAYQRA-DQL----SGGQQQR--- 152
Query: 307 GEMMVGPALAL-------FMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE 359
V A AL DE LD +++ +++ L++ T ++SL Q
Sbjct: 153 ----VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV--- 205
Query: 360 TYDL----FDDIILLSDGQIVYQGPCE 382
DL D I+ L DG+IV+ GP
Sbjct: 206 --DLAREYADRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 3e-14
Identities = 58/198 (29%), Positives = 105/198 (53%), Gaps = 17/198 (8%)
Query: 826 KLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG 885
++ + DKLV+ +G+S + G L+G +GAGKTT + +L G +G+I++ G
Sbjct: 12 NVEKRYGDKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCG 68
Query: 886 YP---KKQETFTRISGYCEQNDIHSPLVTVYESLL-YSAWLRLRTEVDSETRKMFIEEIM 941
P + + R+ G Q D P TV E+LL + + L + R + + ++
Sbjct: 69 EPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLL 123
Query: 942 ELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
E +L+ + VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++
Sbjct: 124 EFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMW 178
Query: 1002 RTVKNTVETGRTVVCTIH 1019
+++ + G+T++ T H
Sbjct: 179 ERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 53/255 (20%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+L+D+S ++ G +T L+GP +GK+TLL A+ G L S SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 198 RTAAYISQHDVHIGE--MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
Y+ Q +TV++ + G + L +++KE
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKEK---------- 119
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
+A L+ +G++ D +G+ +SGGQK+R+ +
Sbjct: 120 VDEA---------------LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 316 ALFMDEISNGLDSSTTFHIVNSL----RQNIHILNGTAVISL-LQPAPETYDLFDDIILL 370
L +DE G+D + I + L ++ +L +++ L FD +I L
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVL----MVTHDLGLVM---AYFDRVICL 212
Query: 371 SDGQIVYQGPCELVL 385
+ ++ GP E VL
Sbjct: 213 -NRHLIASGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 26/223 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFT-RI 896
L+ VS G L AL+G SG+GKTTL+ ++AG + SG I G R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFGGEDATDVPVQERN 75
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETR-KMFIEEIMELVELKPLRQSLVG 955
G+ Q+ +TV++++ + ++ R+E E + + E+++LV+L L
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR--- 132
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-----ET 1010
P + LS QR+R+ +A L P ++ +DEP LDA+ V + ++ + E
Sbjct: 133 YPAQ--LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK----VRKELRRWLRRLHDEL 186
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 1046
T V H + E D + +M +G E+Y P
Sbjct: 187 HVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 33/217 (15%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP----KKQE 891
V+L+ VS G +T+++G +GAGK+TL+ + R SG ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 892 TFTRISGYCEQNDIHSPLVTVYESLL------YSAWLRLRTEVDSETRKMFIEEIMELVE 945
++S ++N I+S L TV L+ YS RL E + I E +E +
Sbjct: 73 LAKKLSILKQENHINSRL-TV-RDLVGFGRFPYSQG-RLTKE-----DRRIINEAIEYLH 124
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
L+ L + LS QR+R IA+ L + + +DEP + LD + + +M+ ++
Sbjct: 125 LEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 1006 NTV-ETGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1038
E G+T+V +H DI A D + +K G
Sbjct: 180 RLADELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 5e-14
Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 44/205 (21%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGNITISGYPKKQ--- 890
LL+ VS RPG + A++G +GAGK+TL+ L+ G + SG + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 891 ETFTRISGYCEQNDIHSPLV---TVYE--SLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
R Q HS L TV E ++ + R E D+ + + V+
Sbjct: 72 AELARRRAVLPQ---HSSLSFPFTVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQVD 123
Query: 946 LKPLR----QSLVGLPGESGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDAR 995
L L L G GE +QR +L A L P + +DEPTS LD
Sbjct: 124 LAHLAGRDYPQLSG--GE-----QQRVQL--ARVLAQLWEPDGPPRWLLLDEPTSALDLA 174
Query: 996 AAAIVMRTVKN-TVETGRTVVCTIH 1019
V+R + E G V+ +H
Sbjct: 175 HQHHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-14
Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 42/291 (14%)
Query: 765 LDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKE 824
+D IGG Q S G+ ++ + + ++ + M LP L+ ++VT K+
Sbjct: 274 IDGAIGGWKQFS--GARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKK 331
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS 884
L G+S + + G A++G SG+GK+TL ++ G SG++ +
Sbjct: 332 -----------PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLD 378
Query: 885 GYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
G KQ ETF + GY Q D+ TV E++ R D E +I+
Sbjct: 379 GADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KII 425
Query: 942 ELVELKPLRQSLVGLP---------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
E +L + + ++ LP G + LS QR+R+ +A L +P ++ +DEP S L
Sbjct: 426 EAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485
Query: 993 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043
D + +K G TVV H+PS + D++ +++ G +
Sbjct: 486 DEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 6e-14
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 17/191 (8%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP---KK 889
DK V+ NG+S G L+G +GAGK+T+ ++ G + +G IT+ G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLL-YSAWLRLRTEVDSETRKMFIEEIMELVELKP 948
+ RI G Q D TV E+LL + + + T + E I ++E L+
Sbjct: 110 RLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGMSTR-EIEA---VIPSLLEFARLES 164
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008
+ V S LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +++ +
Sbjct: 165 KADARV-----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219
Query: 1009 ETGRTVVCTIH 1019
G+T++ T H
Sbjct: 220 ARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 7e-14
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQ 890
+ +L G+S G + G +G GKTTL+ +LAG R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
+ R Y P ++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
LS Q++RL +A ++ + +DEPT+ LD A++ ++ +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1011 GRTVVCTIHQP 1021
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 8e-14
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 47/229 (20%)
Query: 810 LTFDDVT--YSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 867
+TF+ V Y D P V+L+ +S +PG + ++G SG+GK+TL +
Sbjct: 1 ITFEHVRFRYKPDGP-------------VILDNISLRIKPGEVVGIVGRSGSGKSTLTKL 47
Query: 868 LAGRKTGGYI--SGNITISGYP---KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL 922
+ Y+ +G + + G+ R G Q E++L++
Sbjct: 48 IQRF----YVPENGRVLVDGHDLALADPAWLRRQVGVVLQ-----------ENVLFNR-- 90
Query: 923 RLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GE--SGLSTEQRKRLTIA 973
+R + M +E ++E +L + LP GE +GLS QR+R+ IA
Sbjct: 91 SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIA 150
Query: 974 VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022
L+ NP I+ DE TS LD + +MR + + + GRTV+ H+ S
Sbjct: 151 RALIHNPRILIFDEATSALDYESEHAIMRNMHD-ICAGRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 9e-14
Identities = 70/235 (29%), Positives = 106/235 (45%), Gaps = 28/235 (11%)
Query: 826 KLKGV--HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI 883
+L+ V V L+GVS + G L+G SG GKTTL+ ++AG +T SG I +
Sbjct: 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILL 59
Query: 884 SGYPKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIME 942
G R QN P +TV+E++ + LRL+ ++ K + E ++
Sbjct: 60 DGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALD 116
Query: 943 LVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1002
LV+L+ S LS Q++R+ IA LV P ++ +DEP LD + +
Sbjct: 117 LVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQL 171
Query: 1003 TVKNT-VETGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1046
+K E G T V H D EA D + +M +G +EIY P
Sbjct: 172 ELKRLQKELGITFVFVTH----DQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 9e-14
Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 53/258 (20%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+L VS ++PG + +LGP +GK+TLL AL+G+L SG VT NG +N + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 198 RTA---AYISQHDVHIG-EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
A A + Q + + TV+E + G + +A + A
Sbjct: 72 ELARHRAVLPQ-NSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAA-------T 123
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMM--- 310
D+ + G++ L SGG+++R+ ++
Sbjct: 124 DL----SGLAGRDYRTL--------------------------SGGEQQRVQLARVLAQL 153
Query: 311 ---VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367
V LF+DE ++ LD + H + RQ G AV+++L D I
Sbjct: 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRI 211
Query: 368 ILLSDGQIVYQGPCELVL 385
+LL G+++ G + VL
Sbjct: 212 VLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 9e-14
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP---KKQETF 893
LL+GVS RPG + A++G +GAGK+TL+ L+G + SG +T++G P E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEEL 73
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
R QN + TV E + + R+ + E + + + +L L
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMGR-IPHRSGREPEEDERIAAQALAATDLSGLAGRD 132
Query: 954 VGLPGESGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
LS +++R+ +A L V + +F+DEPTS LD +R +
Sbjct: 133 Y-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL 187
Query: 1008 VETGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1038
G V+ +H +++ + D + L+ +G
Sbjct: 188 AREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 62/252 (24%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
L D+S ++PG LLGP GKTTLL +AG SG + +G D+ P
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
+R + Q +TV E +AF + +GV E+ R +E
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV-GPAL 315
L+++GL+ + + +SGGQ++R+ + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 316 ALFMDE-ISNGLDSSTTFHIVNSLRQNI-HILNGTAVISLLQPAPETYDLF------DDI 367
L +DE +S LD + LR+ + + + ++ T+D D I
Sbjct: 152 -LLLDEPLSA-LD----AKLREELREELKELQRELGITTIYV----THDQEEALALADRI 201
Query: 368 ILLSDGQIVYQG 379
++++G+IV G
Sbjct: 202 AVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 59/259 (22%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187
+ + LK VS I+ G ++GP SGK+T LL + G LD SG V +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKST-LLNILGGLDRP--TSGEVRVD 64
Query: 188 GHDMNEFVPQRTAAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYDMLTE 237
G D+++ + AA+ + HIG ++T E + GV + E
Sbjct: 65 GTDISKLSEKELAAFRRR---HIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-----E 116
Query: 238 LARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297
R +E L+ +GL + E+ S
Sbjct: 117 RRERAEEL-----------------------------LERVGLGDRLNHYPS-EL----S 142
Query: 298 GGQKKRLTTGE-MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356
GGQ++R+ + P + + DE + LDS T ++ LR+ ++ GT ++ ++
Sbjct: 143 GGQQQRVAIARALANDPKI-ILADEPTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTH 199
Query: 357 APETYDLFDDIILLSDGQI 375
PE + D II L DG+I
Sbjct: 200 DPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 49/255 (19%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
LKDV+ I G M ++GP +GK+TLL +L G +D + SG + +NG + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 197 -----QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
+R I Q + ++V E + G S + L L +E +A
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQA---- 128
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311
+D + +L Y + A TL SGGQ++R+ +V
Sbjct: 129 -LDAL--------ERVGILDKAYQR-------ASTL---------SGGQQQRVAIARALV 163
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL----FDDI 367
+ DE LD + +++ L+ I+ +G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 368 ILLSDGQIVYQGPCE 382
I L G+IV+ GP
Sbjct: 219 IGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 1e-13
Identities = 72/275 (26%), Positives = 101/275 (36%), Gaps = 88/275 (32%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T+L DVS ++PG + +LGP +GK+TLL AL+G+L SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 198 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 255 VFMKAA--ATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR------LTT 306
V M A E + L L + L A +SGG+++R L
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQ 151
Query: 307 GEMMVGPALALFMDE-ISNGLDSSTTFHIVNSLRQNIHIL---------NGTAVISLLQP 356
GP L +DE S LD L H+L G AVI +L
Sbjct: 152 LWEPDGPPRWLLLDEPTSA-LD----------LAHQHHVLRLARQLAHERGLAVIVVL-- 198
Query: 357 APETYDL------FDDIILLSDGQIVYQGPCELVL 385
+DL D I+LL G++V G VL
Sbjct: 199 ----HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 1e-13
Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 23/200 (11%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS------GY 899
RPG L+GV+GAGKTT +L G T SG+ T++G + T IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 900 CEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959
C Q D L+T E L A LR V +E IE++ ++ L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLR---GVPAEE----IEKVANW-SIQSLGLSLYADRLA 2068
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 1020 QPSIDIFEAF-DELFLMKRG 1038
S++ EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 62/249 (24%)
Query: 812 FDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG- 870
F++V +S D K+ LK ++ +PG A++G +GAGKTTL+++L
Sbjct: 5 FENVNFSYD-EKKPVLKDINFS-----------IKPGETVAIVGPTGAGKTTLINLLMRF 52
Query: 871 -RKTGGYIS-GNITISGYPKK----------QETFTRISGYCEQNDIHSPLVTVYESLLY 918
G I I I +K Q+TF SG T+ E++
Sbjct: 53 YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFL-FSG------------TIMENIRL 99
Query: 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GESG--LSTEQRKR 969
EE++E + ++ LP GE+G LS +R+
Sbjct: 100 G---------RPNATD---EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147
Query: 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAF 1029
L IA ++ +P I+ +DE TS +D ++ ++ ++ GRT + H+ S I A
Sbjct: 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLST-IKNA- 204
Query: 1030 DELFLMKRG 1038
D++ ++ G
Sbjct: 205 DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 63/256 (24%), Positives = 105/256 (41%), Gaps = 72/256 (28%)
Query: 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---- 865
+ F++VT++ D +L VS G A++G SG+GK+T++
Sbjct: 1 IEFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF 48
Query: 866 ---DVLAGRKTGGYISGNITISGYPKK---QETFTRISGYCEQ-----NDIHSPLVTVYE 914
DV SG+I I G + ++ R G Q ND T+
Sbjct: 49 RFYDVS---------SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND------TIGY 93
Query: 915 SLLY---SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GESG--L 962
++ Y A T+ EE++E + + ++ P GE G L
Sbjct: 94 NIRYGRPDA-----TD----------EEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKL 138
Query: 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022
S +++R+ IA ++ NP I+ +DE TS LD + + V GRT + H+ S
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL-RDVSKGRTTIVIAHRLS 197
Query: 1023 IDIFEAFDELFLMKRG 1038
I A D++ ++K G
Sbjct: 198 -TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 69/249 (27%), Positives = 98/249 (39%), Gaps = 60/249 (24%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
++DVS + G +T LLG +GKTTLL +A L SG+VT +G D R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRD 69
Query: 200 AAYISQH-DVHIGE------MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+++ + V GE +T RE L + AR L L+R+E +A I
Sbjct: 70 PSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI----- 114
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
K L L D VG S G K+++ +V
Sbjct: 115 -------------------AELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVH 150
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILN--GTAVISLLQPAPETYDLFDDIILL 370
L +DE ++GLD T I L G AVI E L D +I+L
Sbjct: 151 DPSILVLDEPTSGLDIRTR----RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL 206
Query: 371 SDGQIVYQG 379
G++V +G
Sbjct: 207 HKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 62/266 (23%), Positives = 100/266 (37%), Gaps = 111/266 (41%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
LKD++ + G + ++GP SGK++LL AL G+L+ K+SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 199 TAAYISQHDVHIGE-----MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
+ AY+SQ E T+RE + F G +D
Sbjct: 67 SIAYVSQ------EPWIQNGTIRENILF-------GKPFDE------------------- 94
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCA-----DTLV-GDEMV---RGI--SGGQKK 302
+ Y KV + CA + L GD +GI SGGQK+
Sbjct: 95 ------------------ERYEKV--IKACALEPDLEILPDGDLTEIGEKGINLSGGQKQ 134
Query: 303 RLTTGEMMVGPALA---------LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV--- 350
R+ +LA +D+ + +D+ HI + + + N T +
Sbjct: 135 RI---------SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVT 185
Query: 351 --ISLLQPAPETYDLFDDIILLSDGQ 374
+ LL A D I++L +G+
Sbjct: 186 HQLQLLPHA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 55/253 (21%)
Query: 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV 195
+ L+ VS ++ G + LLG +GKTTLL + G + SGR+ ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 196 PQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
P A AY+ + +TV E L + R ++ +
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLL-------------LGAYARRDKEAQERDLEE 118
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE-MM 310
++F + Q A L SGG+++ L +M
Sbjct: 119 VYELFPRLKERRNQRAGTL--------------------------SGGEQQMLAIARALM 152
Query: 311 VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLL---QPAPETYDLFDDI 367
P L L +DE S GL IV + + I L +++L Q A ++ D
Sbjct: 153 SRPKL-LLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRG 207
Query: 368 ILLSDGQIVYQGP 380
+L +G+IV G
Sbjct: 208 YVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-13
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 30/242 (12%)
Query: 803 LPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 862
L S+ F++V++S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 863 TLMDVLAGRKTGGYISGNITISGYPKKQETFT---RISGYCEQNDIHSPL--VTVYESLL 917
TL+ +L SG I I G + + + G Q+ L T+ E++
Sbjct: 370 TLIKLLLRLYD--PTSGEILIDGIDIRDISLDSLRKRIGIVSQD---PLLFSGTIRENIA 424
Query: 918 YSAWLRLRTEVDSETRKMFIEE-IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVEL 976
E++ + E I L + ++VG LS QR+RL IA L
Sbjct: 425 LGRPDATDEEIEEALKLANAHEFIANLPDGY---DTIVG-ERGVNLSGGQRQRLAIARAL 480
Query: 977 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036
+ NP I+ +DE TS LD A++ +K ++ GRT + H+ S + D + ++
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLD 537
Query: 1037 RG 1038
G
Sbjct: 538 NG 539
|
Length = 567 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-13
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 31/230 (13%)
Query: 826 KLKGV-------HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS 878
+L+ V + L+ VS G + ++G SGAGK+TL+ ++ + S
Sbjct: 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTS 60
Query: 879 GNITISG-----YPKKQ-ETFTRISGYCEQ--NDIHSPLVTVYESLLYSAWLRLRTEVDS 930
G++ + G + + + G Q N + S TV+E++ + L L V
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA-GVPK 115
Query: 931 ETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990
K + E++ELV L + LS Q++R+ IA L NP I+ DE TS
Sbjct: 116 AEIKQRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 991 GLD-ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1038
LD +I+ E G T+V H+ +++ + D + ++ +G
Sbjct: 171 ALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 21/200 (10%)
Query: 829 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISG 885
++++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G
Sbjct: 8 SWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG 67
Query: 886 YPKKQETFTRISGYCEQNDIHSPLVTVYESLLY------SAWLRLRTEVDSETRKMFIEE 939
++ R EQ+ + +TV + + S W DS ++
Sbjct: 68 LSRRARA--RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW-----AGDSPHDAAVVDR 120
Query: 940 IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
+ EL L + S LS +R+R+ +A L P ++ +DEPT+ LD RA
Sbjct: 121 ALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLE 175
Query: 1000 VMRTVKNTVETGRTVVCTIH 1019
+ V+ TG TVV +H
Sbjct: 176 TLALVRELAATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870
F +V++ ++ + L G+S PG AL+G SG GK+T++ +L
Sbjct: 2 EFKNVSFRYPSRPDVPI----------LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE- 50
Query: 871 RKTGGY--ISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLV---TVYESLLYSAWL 922
R Y SG I + G + G Q P++ T+ E++ Y
Sbjct: 51 RF---YDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPD 103
Query: 923 RLRTEVDSETRKMFIEE-IMELVELKPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANP 980
EV+ +K I + IM L P +LVG S LS Q++R+ IA L+ NP
Sbjct: 104 ATDEEVEEAAKKANIHDFIMSL----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNP 158
Query: 981 SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
I+ +DE TS LDA + +V + + GRT + H
Sbjct: 159 KILLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-13
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 20/223 (8%)
Query: 829 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNIT---- 882
++ + VS PG + ++G SG+GK+TL L G + G SG +
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 883 -ISGYPKKQET---FTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMF 936
+ G +++ RI Q+ + S P++T+ + + LRL + +
Sbjct: 76 DLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKR 132
Query: 937 IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
E++E V L P + P + LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 133 AVELLEQVGL-PDPERRDRYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
Query: 997 AAIVMRTVKN-TVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
A ++ +K+ E G V+ H + + E D + +M +G
Sbjct: 190 QAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 21/193 (10%)
Query: 852 ALMGVSGAGKTTLMDVLAG--RKTGGYISGNIT-ISGYPKKQETFTRISGYCEQNDIHSP 908
++G +G+GK+ L++ +AG + G I N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEE---IMELVELKPLRQSLVGLPGESGLSTE 965
+TVY+++ Y R + + E + + I E I L+ KP LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDI 1025
+++R+ IA LV NP I+ +DEP S LD R + +K + V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1026 FEAFDELFLMKRG 1038
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 7e-13
Identities = 67/255 (26%), Positives = 116/255 (45%), Gaps = 57/255 (22%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
L D++ IK G++T L+G +GK+TLL L G L + G + NG D+ + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 197 --QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
++ +++SQ+ ++ T+RE + + ++E
Sbjct: 392 AWRKQISWVSQNP-YLFAGTIRENILLA--------------RPDASDEE---------- 426
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
+ AA +A L ++ K GL DT++G E G+SGGQ +RL ++ PA
Sbjct: 427 --IIAAL---DQAG-LLEFVPKPDGL----DTVIG-EGGAGLSGGQAQRLALARALLSPA 475
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL-----FDDIIL 369
L +DE + LD+ T I+ +L++ T ++ T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQE--LAKQKTVLVI-------THRLEDAADADRIVV 526
Query: 370 LSDGQIVYQG-PCEL 383
L +G++V QG EL
Sbjct: 527 LDNGRLVEQGTHEEL 541
|
Length = 559 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 73/275 (26%), Positives = 111/275 (40%), Gaps = 69/275 (25%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHDMNEFVP- 196
ILK V+ +K G + ++GP SGK+TL + G +V G + ++G D+ E P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFS--ARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
+R A I LAF GV + + + R GI P+ FI
Sbjct: 77 ERARAGI--------------FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE-FIK 121
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR-----GISGGQKKRLTTGEM 309
++LGLD +E + G SGG+KKR ++
Sbjct: 122 ---------------ELKEKAELLGLD--------EEFLERYVNEGFSGGEKKRNEILQL 158
Query: 310 MV-GPALALFMDEISNGLD---SSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365
++ P LA+ +DE +GLD +N+LR+ G +I+ Q L D
Sbjct: 159 LLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREEG---RGVLIITHYQ------RLLD 208
Query: 366 DII-----LLSDGQIVYQGPCELVLDFFESMGFKC 395
I +L DG+IV G EL + E G+
Sbjct: 209 YIKPDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 7e-13
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 17/215 (7%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYISGNITISG---YPKKQ 890
++GVS + G + ++G SG+GK+ L + G + + G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 891 ETFTRISG----YCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
+ +I G Q+ + S P++T+ + + L + E ++ E++ELV
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER-AIELLELV 138
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
+ + L P E LS R+R+ IA+ L NP ++ DEPT+ LD A ++ +
Sbjct: 139 GIPDPERRLKSYPHE--LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 1005 KNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
K E G ++ H + + E D + +M G
Sbjct: 197 KELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-13
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 810 LTFDDVT--YSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 867
+ F +VT Y D P +L +S G AL+G SG+GK+TL+++
Sbjct: 1 VEFKNVTFRYPGDGPP-------------VLRDISLDIPAGETVALVGPSGSGKSTLVNL 47
Query: 868 LAGRKTGGYISGNITISGYPKKQETFT---RISGYCEQNDIHSPLVTVYESLLYSAWLRL 924
+ + SG I I G+ + T R G Q D+ TV E++ Y
Sbjct: 48 IP--RFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR---- 100
Query: 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GESG--LSTEQRKRLTIAVE 975
TR EE+ E + ++ LP GE G LS QR+R+ IA
Sbjct: 101 ----PGATR----EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARA 152
Query: 976 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035
L+ +P I+ +DE TS LD + +V ++ ++ RT H+ S I A D + ++
Sbjct: 153 LLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVL 209
Query: 1036 KRGG 1039
+ G
Sbjct: 210 EDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 8e-13
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 35/217 (16%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L+GVS RPG + AL+G +GAGK+TLM +L+G SG I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 896 ISGYCEQND-----IH-----SPLVTVYESLLYSAWLRLR-TEVDSETRKMFIE--EIME 942
S + +H P ++V E++ R +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 943 LVEL-KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
+ L LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDT-LVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
++ G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 8e-13
Identities = 64/223 (28%), Positives = 93/223 (41%), Gaps = 47/223 (21%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGNITISGYPKKQETF 893
+N ++ G L+G SG+GKTT M + I SG I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 894 TRIS---GYCEQNDIHSPLVTVYE------SLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
+ GY Q P +TV E LL W + E + +E++ LV
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALV 121
Query: 945 ELKPLRQSLVG-LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
L P P E LS Q++R+ +A L A+P ++ MDEP LD I
Sbjct: 122 GLDP--AEFADRYPHE--LSGGQQQRVGVARALAADPPLLLMDEPFGALD----PITRDQ 173
Query: 1004 VKNTV-----ETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
++ E G+T+V H DI EAF D + +MK G
Sbjct: 174 LQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 8e-13
Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETF 893
+L GVS + G + A++G SG+GK+TL+ +L G SG + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 894 TRIS-------GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
+ G+ Q P T E++ + ++ +++ R E++E V L
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGL 131
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRT 1003
+ + P E LS +R+R+ IA LV PS++ DEPT LD A I+ M
Sbjct: 132 E---HRINHRPSE--LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 1004 VKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039
+ + T VV H ++ + D + MK G
Sbjct: 187 LNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 9e-13
Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 62/203 (30%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L+GVS + R G + AL+G +GAGK+TLM +L+G + SG I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEV------- 64
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
SP + R+ I + +L
Sbjct: 65 --------SFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1015
S +R+ + IA L N ++ +DEPT+ L + + ++ G V+
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1016 CTIHQPSIDIFEAFDELFLMKRG 1038
H+ ++FE D + +++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 9e-13
Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L G++ + G +TA++G +GAGK+TL L G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 896 IS-GYCEQNDIHSPL-VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
S G Q+ + +VY+ + + A + L+ D ++ ++ ++ ++ L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGA-VNLKLPEDEVRKR--VDNALKRTGIEHLKDK- 137
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGR 1012
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + E G
Sbjct: 138 ---PTHC-LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 1013 TVVCTIHQPSIDIFEAF-DELFLMKRG 1038
T++ H IDI + D +F+MK G
Sbjct: 194 TIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 64/264 (24%), Positives = 101/264 (38%), Gaps = 74/264 (28%)
Query: 131 TTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190
+ + LKDV+ I+ G ++GP SGK+T LL L G LD SG V NG D
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDK--PTSGEVLINGKD 68
Query: 191 MNEFVPQRTAA-------YISQ-HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARRE 242
+ + + A ++ Q ++ + ++TV E + G A R
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGK---------SAGRR 118
Query: 243 KEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302
K A + L+VLGL + + + +SGGQ++
Sbjct: 119 KRA-------------------------AEELLEVLGL----EDRLLKKKPSELSGGQQQ 149
Query: 303 RLTTGEMMVGPALA-----LFMDE-ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356
R+ + AL + DE N LDS T ++ LR+ T ++
Sbjct: 150 RV-----AIARALINNPKIILADEPTGN-LDSKTAKEVLELLRELNKERGKTIIMV---- 199
Query: 357 APETYDL-----FDDIILLSDGQI 375
T+D D +I L DG+I
Sbjct: 200 ---THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-12
Identities = 62/257 (24%), Positives = 97/257 (37%), Gaps = 55/257 (21%)
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
IL VS + G + LLG +GKTTLL + G L SG + ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 197 QRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
A Y+ + E+TV E L +L ARR + + +
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENL--------------LLGAYARRRAKRKARLERV 115
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE-MMV 311
++F + Q A L SGG+++ L +M
Sbjct: 116 YELFPRLKERRKQLAGTL--------------------------SGGEQQMLAIARALMS 149
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILN--GTAVISLLQPAPETYDLFDDIIL 369
P L L +DE S GL IV + + I L G ++ + Q A ++ D +
Sbjct: 150 RPKL-LLLDEPSEGLAPK----IVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYV 204
Query: 370 LSDGQIVYQGPCELVLD 386
L G++V +G +L
Sbjct: 205 LERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVG 955
G QN+ P + V +++ + L+LR ++ R+ +++ LV L+ + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFG--LQLRG-IEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSGG------MRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 76/266 (28%), Positives = 113/266 (42%), Gaps = 35/266 (13%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS-----LKVSG 182
L ++H IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G
Sbjct: 5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
Query: 183 RVTYNGHDMNEFVPQRTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELA 239
VT NG + R A A + Q + AFSAR + RY A
Sbjct: 65 DVTLNGEPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH----A 112
Query: 240 RREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG 299
RR + ++ +A A G A ++G DV TL G E+ R
Sbjct: 113 RRAGALTHRDG---EIAWQALALAGATA---------LVGRDVT--TLSGGELARVQFAR 158
Query: 300 QKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE 359
+L P L +DE + LD + +++++R+ N V++++
Sbjct: 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNL 217
Query: 360 TYDLFDDIILLSDGQIVYQGPCELVL 385
D I +L+DG IV G VL
Sbjct: 218 AARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 34/252 (13%)
Query: 796 PKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMG 855
M LP +L+ + +T + P + K +L G+S A + G ++G
Sbjct: 321 AAAERMPLPAPQGALSVERLTAAP--PGQKK---------PILKGISFALQAGEALGIIG 369
Query: 856 VSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTV 912
SG+GK+TL +L G SG++ + G +Q E R GY Q D+ T+
Sbjct: 370 PSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTI 426
Query: 913 YESLLYSAWLRLRTEVDSETRKMFIE-----EIMELVELKPL-RQSLVGLPGESGLSTEQ 966
E++ R E D E IE + EL+ P + +G G + LS Q
Sbjct: 427 AENIA-----RFGEEADPEK---VIEAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQ 477
Query: 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIF 1026
R+R+ +A L +P ++ +DEP S LD+ A + + G TVV H+PS
Sbjct: 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--AL 535
Query: 1027 EAFDELFLMKRG 1038
+ D++ +++ G
Sbjct: 536 ASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 29/171 (16%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITISGYPKKQETF 893
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 894 TRISGYCEQNDIHSPLV----TVYESLLYS--------AWLRLRTEVDSETRKMFIEEIM 941
R G + P V TV E+L + A L R + R I+E++
Sbjct: 79 ARA-GIGRK--FQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR---IDELL 132
Query: 942 ELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
+ L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 133 ATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 2e-12
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 44/212 (20%)
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
L L DVS ++PG + L+GP +GKTTL ++G L + SG V ++G D+ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 197 QRTAAY-IS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
A I Q E+TV E + +A+ + + +L ARRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE------- 119
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE---- 308
+ A E L+ +GL AD G+ +S GQ++RL E
Sbjct: 120 ----ARERAEE----------LLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 309 MMVGPALALFMDEISNGLDSSTTFHIVNSLRQ 340
+ P L L +DE + GL+ T + +R+
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-12
Identities = 67/245 (27%), Positives = 100/245 (40%), Gaps = 45/245 (18%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
+L+D+S I PG ++G SGK+TLL L G GR+ +G D+N+
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS 544
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
R Y+ Q D + ++RE +A + I+
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN---------------------PEATDEEIIEA 582
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
A A E + L + DT VG E +SGGQ++RL ++
Sbjct: 583 AQLAGAHE------------FIENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPK 629
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
L +DE ++ LD T I+ +L Q IL G VI ++ T D II+L G+I
Sbjct: 630 ILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGKI 685
Query: 376 VYQGP 380
V QG
Sbjct: 686 VEQGS 690
|
Length = 709 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 44/216 (20%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG---HDMNEFV 195
+L VS + PG +LGP SGK+TLL LAG LD G VT +G +++
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 196 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
+R + +Q D H+ + TVRE L + + ++ L R G+ L
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWL---- 454
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
A +G DT++G E +SGG+++RL ++ A
Sbjct: 455 ---RALPDG-------------------LDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI 351
L +DE + LD+ T ++ L L+G V+
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 45/234 (19%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP--- 196
L+ VS + PG L+GP +GK+TLL L G +D + G + NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
+ A++ QH + T+ E + LAR +
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIR-----------------LARPD-------------- 422
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
A+ E +EA V L DT +G+ G+SGGQ +RL + A
Sbjct: 423 --ASDAEIREALERAGLDEFVAALPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370
L +DE + LD+ T ++ +LR + G V+ L+ L D I++L
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRA---LAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFT-RI 896
L+ V+ G L AL+G SG+GK+TL+ ++AG + SG I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGL 956
G+ Q+ +TV +++ + +R K +EE++ELV+L+ L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKH---PKAKIKARVEELLELVQLEGLGDRY--- 127
Query: 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 --PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 847 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITISGYPKKQ-ETFTRISGYC 900
PG +TA+ G SG+GKTTL+ ++AG R G ++G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 901 EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960
Q P ++V +L Y R++ E ++EL+ + L L LPG
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHL---LGRLPGR- 131
Query: 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 59/262 (22%), Positives = 109/262 (41%), Gaps = 60/262 (22%)
Query: 126 SIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185
+ LT + L VS + PG M LLGP +GKTTL+ LA S SG +
Sbjct: 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIR 57
Query: 186 YNGHD----MNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARR 241
+G D + +R Y+ Q TVRE L + A +G+ S+
Sbjct: 58 IDGQDVLKQPQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK--------EV 107
Query: 242 EKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQK 301
+ D L+++ L + + +SGG +
Sbjct: 108 KARV--------------------------DEVLELVNL-----GDRAKKKIGSLSGGMR 136
Query: 302 KRLTTGEMMVG-PALALFMDEISNGLD--SSTTF-HIVNSLRQNIHILNGTAVISLLQPA 357
+R+ + +VG P++ L +DE + GLD F ++++ L ++ ++ T ++ ++
Sbjct: 137 RRVGIAQALVGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE-- 193
Query: 358 PETYDLFDDIILLSDGQIVYQG 379
L + + +L+ G++V++G
Sbjct: 194 ----SLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 3e-12
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
+LKDVS IKPG ++GP SGK+TLL L D + SG + +G D+ + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 198 --RTAAYISQHDVHIGEMTVRE 217
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 66/259 (25%), Positives = 100/259 (38%), Gaps = 66/259 (25%)
Query: 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN 192
KK + + VS +KPG +T LLGP +GKTT L LAG L+ +G T +G D+
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 193 E----------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARRE 242
+ FV T Y +T RE L + A G+
Sbjct: 71 KEPAEARRRLGFVSDSTGLY--------DRLTARENLEYFAGLYGL-------------- 108
Query: 243 KEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302
+G E + LG+ + L D V G S G ++
Sbjct: 109 --------------------KGDELTARLEELADRLGM---EELL--DRRVGGFSTGMRQ 143
Query: 303 RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILN--GTAVISLLQPAPET 360
++ +V L +DE + GLD T +LR+ I L G ++ E
Sbjct: 144 KVAIARALVHDPPVLLLDEPTTGLDVMAT----RALREFIRQLRALGKCILFSTHIMQEV 199
Query: 361 YDLFDDIILLSDGQIVYQG 379
L D +++L G++VY+G
Sbjct: 200 ERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 57/265 (21%)
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
LT + DVS ++PG + L+GP +GKTTL + G S SG V + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 197 QRTAAY-IS---QHDVHI-GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
R A I+ Q + +TV E +A A + S + E+EA
Sbjct: 74 HRIARLGIARTFQI-TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA------ 126
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE--- 308
+ A L+ +GL AD G+ +S GQ++RL E
Sbjct: 127 -----RERARE-----------LLEFVGLGELADRPAGN-----LSYGQQRRL---EIAR 162
Query: 309 -MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV------ISLLQPAPETY 361
+ P L L +DE + GL+ T + +R + G + + L+
Sbjct: 163 ALATQPKL-LLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV------M 214
Query: 362 DLFDDIILLSDGQIVYQGPCELVLD 386
L D I++L+ G+++ +G E V +
Sbjct: 215 GLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 57/196 (29%), Positives = 84/196 (42%), Gaps = 25/196 (12%)
Query: 830 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS---GNITIS 884
K+ L GVS G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT-- 68
Query: 885 GYPKKQETFTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
R Y + P +TV E+LL A+ R E +EE+
Sbjct: 69 ----GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERD----LEEVY 120
Query: 942 ELV-ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
EL LK R G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 121 ELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175
Query: 1001 MRTVKNTV-ETGRTVV 1015
+K E G T++
Sbjct: 176 FEAIKELRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 12/186 (6%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFT 894
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 895 RIS-GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
R G Q+ P TVYE++ LR+ + E R+ + E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRR----RVSEVLDLVGLKHKA 131
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
LP + LS +++R+ IA +V P+++ DEPT LD + +MR + G T
Sbjct: 132 RALPSQ--LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1014 VVCTIH 1019
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-12
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 40/217 (18%)
Query: 847 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGY-P-KKQETFTRISGYCEQ 902
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGL--- 101
Query: 903 NDIHSPLVTVYESLLYSAW----------LRLRTEVDSETRKMFIEEIMELVELKP-LRQ 951
++ L W L+L E+ + ++ + E+++L+ L+
Sbjct: 102 ------VMGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVET 1010
+ LS QR R +A L+ P ++F+DEPT GLD A A + +K E
Sbjct: 153 PV------RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047
TV+ T H DI D + L+ + GQ ++ G L
Sbjct: 207 QATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 3e-12
Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 25/190 (13%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGNITISGYPKKQETF- 893
L+ VS + G + +G +GAGK+T M ++ G Y+ SG++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 894 -TRISGYCEQNDIHSPL---VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
R GY + H+PL + V E L + A + + + K +EE++ELV L+P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPE 126
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD + +KN +
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN-IG 180
Query: 1010 TGRTVVCTIH 1019
+T++ + H
Sbjct: 181 KDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 29/221 (13%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGNITISGYPKKQE--- 891
++ V+ G L+G SG+GKTT + + I SG I I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 892 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
R GY Q P +TV E++ L D E K +E+++LV L P +
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDP-SE 127
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVKNTV 1008
P E LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 128 YADRYPHE--LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK-- 183
Query: 1009 ETGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEIYVGP 1046
E G+T+V H DI EA D + +M G Y P
Sbjct: 184 ELGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-12
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 48/194 (24%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQ---- 890
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 891 ---ETFTRISGYCEQNDIHSPLVTVYESLLYSA----------WLRLRTEVDSETRKMFI 937
F + + + TV+E+L + + RL E I
Sbjct: 78 GIGRKFQKPTVFENL--------TVFENLELALPRDKSVFASLFFRLSAEEKDR-----I 124
Query: 938 EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
EE++E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 125 EEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM----- 174
Query: 998 AIVMRTVKNTVETG 1011
T + T +T
Sbjct: 175 -----TDEETEKTA 183
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 28/193 (14%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISG---YPKKQET 892
L G+S G + +G +GAGKTT + +L+G + T SG + ++G + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKF 92
Query: 893 FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL-----K 947
RI Q + V +S L ++ K ++E+ EL++L
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSF---YLLAAIYDLPPARFKKRLDELSELLDLEELLDT 149
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
P+RQ LS QR R IA L+ P I+F+DEPT GLD A + +K
Sbjct: 150 PVRQ----------LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 1008 V-ETGRTVVCTIH 1019
E G TV+ T H
Sbjct: 200 NRERGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 5e-12
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 132 TKK-KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190
+K+ T L D+S ++ G + LLGP +GKTTL+ + G L SG + G D
Sbjct: 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKD 63
Query: 191 MN---EFVPQRTAAYISQHDVHIGEMTVRETLAFS 222
+ E V +R Y+ + +TVRE L S
Sbjct: 64 IKKEPEEVKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 5e-12
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK-KQETFT 894
V++N +S G L+G +GAGK+T+ +L G + G IT+ G P +
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 895 RIS-GYCEQNDIHSPLVTVYESLL-YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS 952
R++ G Q D P TV E+LL + + + T + I ++E L+
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR----EIEAVIPSLLEFARLESKADV 131
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1012
V L LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +++ + G+
Sbjct: 132 RVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 1013 TVVCTIH 1019
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 33/191 (17%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
+N +S + L+G +GAGK+TL+ ++ G R T SG I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDS--ETRKMFIEEIMELVEL-----KP 948
I I SP +YE+L L++ T + ++R I+E++ +V+L K
Sbjct: 72 IGSL-----IESP--PLYENLTARENLKVHTTLLGLPDSR---IDEVLNIVDLTNTGKKK 121
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008
+Q +G+ ++RL IA+ L+ +P ++ +DEPT+GLD + +++
Sbjct: 122 AKQFSLGM----------KQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP 171
Query: 1009 ETGRTVVCTIH 1019
E G TV+ + H
Sbjct: 172 EQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-12
Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+L + VT S DK + + +S PG + L+G +GAGKTT ++
Sbjct: 2 ALEIEGVTKSFG------------DKKAV-DNISFEVPPGEIFGLLGPNGAGKTTTFRMI 48
Query: 869 AGRKTGGYISGNITISGYPKKQETFTRISGYC-EQNDIHSPLVTVYESLLYSAWLRLRTE 927
G G IT +G P QE RI GY E+ ++ P +TV + L Y A L+ +
Sbjct: 49 LGLLE--PTEGEITWNGGPLSQEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMPK 104
Query: 928 VDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987
+ + + ++ +E +E+ + + LS ++++ ++ P ++ +DE
Sbjct: 105 AEIQKK---LQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDE 156
Query: 988 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047
P SGLD ++ + E G T++ + H+ + E D L ++K+ GQ + G +
Sbjct: 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 5e-12
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 26/214 (12%)
Query: 819 ADMPKEMKLKGVH----EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 874
A + ++L+ V + L + G A++G SG+GK+TL+ +LAG
Sbjct: 331 ATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD- 389
Query: 875 GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR--LRT-EVDSE 931
G+IT++G I+ EQ + V L+S LR LR D+
Sbjct: 390 -PQQGSITLNGVE--------IASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDAS 440
Query: 932 TRKMFIEEIMELVEL-KPLRQSLVGLP---GESG--LSTEQRKRLTIAVELVANPSIIFM 985
+++ ++ V L K L + GL GE G LS +R+RL +A L+ + + +
Sbjct: 441 DEELW--AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498
Query: 986 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
DEPT GLD V+ + E G+T++ H
Sbjct: 499 DEPTEGLDPITERQVLALLFEHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 16/192 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG-----YPKKQET 892
L+ VS R G L G SGAGKTTL+ +L G T G + I+G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 893 FTRIS-GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
R G Q+ P TVYE++ +R + E + + R + + V L+
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH--- 129
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
P + LS +++R+ IA +V +P ++ DEPT LD + ++ +K + G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1012 RTVVCTIHQPSI 1023
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-12
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 821 MPKEMKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGY 876
M ++++G+ + +V + VS + + G + AL+G +GAGK+TLM +L G +
Sbjct: 1 MEPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--- 57
Query: 877 ISGNITISGYPKKQETFTRIS----------GYCEQNDIHSPLV---TVYE----SLLYS 919
SG I + G RI G Q H LV TV E L S
Sbjct: 58 -SGEIRVDGKE------VRIKSPRDAIRLGIGMVHQ---HFMLVPTLTVAENIILGLEPS 107
Query: 920 AWLRLRTEVDSETRKMFIEEIMEL--VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV 977
+ + R I+E+ E + + P + V LS +++R+ I L
Sbjct: 108 KGGLIDR---RQARAR-IKELSERYGLPVDP--DAKVA-----DLSVGEQQRVEILKALY 156
Query: 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1015
++ +DEPT+ L + A + ++ G+T++
Sbjct: 157 RGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 6e-12
Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 51/247 (20%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS---SLKVSGRVTYNGHDMNEF 194
+L+DVS +KPG ++GP +GK+TLL A+ G L S++V G+ +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72
Query: 195 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
VPQR + D I +VR+ + G+ + L++ +K
Sbjct: 73 VPQRRSI---DRDFPI---SVRDVVLM-----GLYGHKGLFRRLSKADKAK--------- 112
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
EA L+ +GL AD +G+ +SGGQ++R+ +V
Sbjct: 113 ---------VDEA-------LERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDP 151
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISL--LQPAPETYDLFDDIILLSD 372
L +DE G+D T I LR+ + T ++ L + FD ++LL +
Sbjct: 152 DLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLL-N 206
Query: 373 GQIVYQG 379
+V G
Sbjct: 207 RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 28/220 (12%)
Query: 821 MPKEMKLKGVHEDKLV--------LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872
MP E ++ H K V +L GV + G A++G SG+GK+TL+ VLAG
Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 873 TGGYISGNITISGYP---KKQETFTRIS----GYCEQNDIHSPLVTVYESLLYSAWLRLR 925
SG + + G P ++ + G+ Q+ P +T E++ LR
Sbjct: 61 DPS--SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985
+ DS L+E L + L P + LS +++R+ +A P ++F
Sbjct: 119 SSADSRAGA------KALLEAVGLGKRLTHYPAQ--LSGGEQQRVALARAFAGRPDVLFA 170
Query: 986 DEPTSGLDARAAAIVMRTV--KNTVETGRTVVCTIHQPSI 1023
DEPT LD + + N E G T+V H P +
Sbjct: 171 DEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 7e-12
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 126 SIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185
I L+ + T L +VS +K G + L+GP SGK+TLL A+AG L + SG +
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEIL 57
Query: 186 YNGHDMNEFVPQ---RTAAYISQ 205
+G D+ + + R Y+ Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 61/252 (24%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
+L+D+S I G L+GP SGK+TL+ + D SGR+ +GHD+ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
R +SQ DV + TV E +A+ R E E + +
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAYGRP------------GATREEVEEAARAANAHEF 120
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI--SGGQKKRLTTGEMMVGP 313
M+ L + Y DT++G+ RG+ SGGQ++R+ ++
Sbjct: 121 IME-----------LPEGY----------DTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 314 ALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVI----SLLQPAPETYDLFDDI 367
L +DE ++ LD+ + + +L ++ T VI S ++ A D I
Sbjct: 157 PPILILDEATSALDTESERLVQAALE---RLMKNRTTFVIAHRLSTIENA-------DRI 206
Query: 368 ILLSDGQIVYQG 379
++L DG+IV +G
Sbjct: 207 VVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 27/189 (14%)
Query: 821 MPKEMKLKGVH---------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871
MP E ++ VH E +L +L GV + G AL+G SG+GK+TL+ +LAG
Sbjct: 1 MPAENIVE-VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59
Query: 872 KTGGYISGNITISGYP-------KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924
G SG +++ G P + + + G+ Q+ + P + E++ A L
Sbjct: 60 DDGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL--L 115
Query: 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIF 984
R E ++R L+E L + L LP + LS +++R+ +A P ++F
Sbjct: 116 RGESSRQSR----NGAKALLEQLGLGKRLDHLPAQ--LSGGEQQRVALARAFNGRPDVLF 169
Query: 985 MDEPTSGLD 993
DEPT LD
Sbjct: 170 ADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 26/201 (12%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIS-GNITISGYP--KKQ 890
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 891 ETFTRI----SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
+ R G+ QN P TV E+++ V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP-----VIVKGEPKEEATARARELL-- 129
Query: 947 KPLRQSLVGLPGESG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
+ VGL G+ LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1002 RTVKNTVETGRTVVCTIHQPS 1022
T++ + RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 62/264 (23%), Positives = 100/264 (37%), Gaps = 77/264 (29%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG--QLDSSLKVSGRVTYNGHDMNE--- 193
LKD+S I G +T L+GP GK+TLL L L G V +G D+ +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 194 ----------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREK 243
V Q+ + ++ + +A+ R G+ + EL R +
Sbjct: 75 DVLELRRRVGMVFQKPNPF---------PGSIYDNVAYGLRLHGIKLK----EELDERVE 121
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
EA K L+ +V + A G+SGGQ++R
Sbjct: 122 EALRKAALWDEVKDRLHA--------------------------------LGLSGGQQQR 149
Query: 304 LTTGE-MMVGPALALFMDEISNGLDSSTTFHI---VNSLRQNIHILNGTAVI---SLLQP 356
L + P + L +DE ++ LD +T I + L++ T VI ++ Q
Sbjct: 150 LCLARALANEPEV-LLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIVTHNMQQA 203
Query: 357 APETYDLFDDIILLSDGQIVYQGP 380
A + D L +G++V GP
Sbjct: 204 A----RVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 9e-12
Identities = 59/277 (21%), Positives = 101/277 (36%), Gaps = 82/277 (29%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187
T + L DVS IK G L+G SGK+TL A+ G L SG + ++
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFD 65
Query: 188 GHDMNEFVPQ------RTAAYISQHDVHIGE--------MTVRETLAFSARCQGVGSRYD 233
G D+ + + + + Q + MT+ E +A R G S+ +
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQ------DPMSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 234 MLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293
AR+E L +GL V +
Sbjct: 120 -----ARKEAVL---------------------------LLLVGVGL----PEEVLNRYP 143
Query: 294 RGISGGQKKRLTTGEMMVGPALA-----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGT 348
+SGGQ++R+ + ALA L DE ++ LD S I++ L++ + G
Sbjct: 144 HELSGGQRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGL 197
Query: 349 AVI------SLLQPAPETYDLFDDIILLSDGQIVYQG 379
++ ++ + D + ++ G+IV +G
Sbjct: 198 TLLFITHDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 52/199 (26%), Positives = 73/199 (36%), Gaps = 55/199 (27%)
Query: 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193
KK IL D+S + G + L G +GKTTL LAG + S SG + NG +
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKA 66
Query: 194 FVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+++ Y+ Q D + +VRE L
Sbjct: 67 KERRKSIGYVMQDVDYQLFTDSVREELLLGL----------------------------- 97
Query: 253 IDVFMKAAATEGQEANVLTD---YYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG-E 308
+ A Q VL D Y LK + +SGGQK+RL
Sbjct: 98 ----KELDAGNEQAETVLKDLDLYALK-------------ERHPLSLSGGQKQRLAIAAA 140
Query: 309 MMVGPALALFMDEISNGLD 327
++ G L L DE ++GLD
Sbjct: 141 LLSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 58/255 (22%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-R 198
L DVS I G + LLGP SGKTTLL +AG L+ SG + + G D + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQER 74
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
++ QH MTV + +AF R + + R EA I+
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPR----------SERPPEAEIR---------- 114
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA-- 316
+ + L LK++ LD AD +SGGQ++R + + ALA
Sbjct: 115 ------AKVHEL----LKLVQLDWLADRYPAQ-----LSGGQRQR-----VALARALAVE 154
Query: 317 ---LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373
L +DE LD+ + LR+ L+ T V + E ++ D +++++ G
Sbjct: 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKG 213
Query: 374 QI--------VYQGP 380
+I VY P
Sbjct: 214 RIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 2e-11
Identities = 61/258 (23%), Positives = 97/258 (37%), Gaps = 66/258 (25%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T+LK V ++ G + ++GP SGK+TLL + G L SG V +G D++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEA 70
Query: 198 ------RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
R + Q +TV E +AF R S + + E+
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIREIVL----------- 118
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311
K L+ +GL D + +SGG KKR+
Sbjct: 119 -----EK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 312 GPALA---------LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD 362
ALA L DE + GLD + +++ L +++ G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIAS-GVIDDLIRSLKKELGLTSIMVTHDLDTAFA 202
Query: 363 LFDDIILLSDGQIVYQGP 380
+ D I +L DG+IV +G
Sbjct: 203 IADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 66/249 (26%), Positives = 103/249 (41%), Gaps = 57/249 (22%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-- 197
L +VS I+ G ++G SGK+TLL LAG + SG V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 198 -RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
R Y+ Q DV + T+R+ + A + +L A AG + F
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL-RAAEL---AG------VTDF 122
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
+ GL D +G E RG+SGGQ++ + ++
Sbjct: 123 VNKHP----------------NGL----DLQIG-ERGRGLSGGQRQAVALARALLNDPPI 161
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI------SLLQPAPETYDLFDDIILL 370
L +DE ++ +D ++ + LRQ +L +I SLL DL D II++
Sbjct: 162 LLLDEPTSAMDMNSEERLKERLRQ---LLGDKTLIIITHRPSLL-------DLVDRIIVM 211
Query: 371 SDGQIVYQG 379
G+IV G
Sbjct: 212 DSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 60/250 (24%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
L DVS ++PGR LLGP +GK+TL L + G+++ GHD+ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 200 AAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV-GPAL 315
L LGL A+ D+ VR ++GG ++R+ ++ PAL
Sbjct: 117 ------------------LARLGL---AERA--DDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 316 ALFMDEISNGLDSSTTFHIVNSLR-----QNIHILNGTAVISLLQPAPETYDLFDDIILL 370
L +DE + GLD ++ I +R Q + +L T ++ ++ D +++L
Sbjct: 154 -LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 371 SDGQIVYQGP 380
G+++ G
Sbjct: 206 HRGRVLADGA 215
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 2e-11
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFT 894
+L+ +S G L AL+G SG GKTTL+ +AG ++G I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV 954
R QN P + V +++ + LR + + E + + ++L L +
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFG--LRAQ----KMPKADIAERVADALKLVGLGDAAA 132
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GR 1012
LP + LS ++R+ IA + P ++ +DEP S LDA A + + E
Sbjct: 133 HLPAQ--LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1013 TVVCTIHQPSIDIFEAFDELFLMKRG 1038
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-11
Identities = 65/268 (24%), Positives = 114/268 (42%), Gaps = 49/268 (18%)
Query: 783 SHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVS 842
S ++ A P+ RG ++TF+++ + D +L+ ++
Sbjct: 437 SPTEPRSAGLAALPELRG--------AITFENIRFR-----------YAPDSPEVLSNLN 477
Query: 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGY 899
+PG ++G SG+GK+TL +L T + G + + G R G
Sbjct: 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIADPAWLRRQMG- 534
Query: 900 CEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-- 957
V + E++L+S +R + E ++ +L + LP
Sbjct: 535 ----------VVLQENVLFSR--SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQG 582
Query: 958 -----GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
GE G LS QR+R+ IA LV NP I+ DE TS LD + A++MR ++ +
Sbjct: 583 YNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICR 641
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
GRTV+ H+ + A D + ++++G
Sbjct: 642 GRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 16/188 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFT 894
+N VS G + L+G +GAGKTT ++ G R G I + I+ P +
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 895 RISGYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSET--RKMFIEEIMELVELKPLRQ 951
I GY Q I L TV ++++ A L +R E D + RK ++ ++E + LR
Sbjct: 80 GI-GYLPQEASIFRKL-TVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHLRD 134
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
S S LS +R+R+ IA L ANP I +DEP +G+D A + R +K+ + G
Sbjct: 135 S----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189
Query: 1012 RTVVCTIH 1019
V+ T H
Sbjct: 190 IGVLITDH 197
|
Length = 243 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 862 TTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS----GYCEQNDIHSPLVTVYESLL 917
+TL+ ++ G SG I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV 977
+ + EE +E V L LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARALL 106
Query: 978 ANPSIIFMDEPTS 990
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 63/258 (24%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
LT +L D+S +K G + LGP +GKTT + + G + SG +T++G
Sbjct: 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGK 62
Query: 190 DM--NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
N +R A I + +T RE L AR G+ R+K
Sbjct: 63 SYQKNIEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI------------RKKRI-- 107
Query: 248 KPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG 307
D L V+GL + V+G S G K+RL
Sbjct: 108 ------------------------DEVLDVVGLKD-----SAKKKVKGFSLGMKQRLGIA 138
Query: 308 EMMVG-PALALFMDEISNGLDSSTTFHIVNSLRQNIHILN---GTAVIS--LLQPAPETY 361
++G P L L +DE +NGLD + LR+ I L T +IS LL E
Sbjct: 139 LALLGNPDL-LILDEPTNGLDPDG----IKELRELILSLRDQGITVLISSHLLS---EIQ 190
Query: 362 DLFDDIILLSDGQIVYQG 379
+ D I +++ G+++ +G
Sbjct: 191 KVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 25/239 (10%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ET 892
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 893 FTRISGYCEQNDIHSPLVTVYESLL------YSAWLRLRTEVDSETRKMFIEEIMELVEL 946
F R Y Q + +TV E + + A R D E +EE + LV L
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA-DREK----VEEAISLVGL 137
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
KPL LV LS +R+R IA+ + + + +DEPTS LD V+ V
Sbjct: 138 KPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 1007 -TVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG-PLGSNSSDLISYLQLMPM 1063
+ E G TV+ +H I++ + + + RGG+ I G P + + + +PM
Sbjct: 193 LSQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGIPM 249
|
Length = 265 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 21/204 (10%)
Query: 826 KLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG 885
K+ G K+ L VS + G + ++G SGAGK+TL+ + G + SG++ + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 886 Y------PKKQETFTRISGYCEQ--NDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFI 937
K+ R G Q N + S TV+E++ L + V + +
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEI-AGVPKAEIEERV 121
Query: 938 EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
E++ELV L+ + P + LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADAY---PAQ--LSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 998 AIVMRTVKNT-VETGRTVVCTIHQ 1020
++ +++ E G T+V H+
Sbjct: 177 QSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 26/208 (12%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L ++ G L ++G SG GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
G QN+ P V +++ + L+L V+ R ++++ V L+ + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVKNTV--ETGRT 1013
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + ETG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1014 VVCTIHQPSIDIFEAF---DELFLMKRG 1038
V+ H DI EA EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-11
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI-S 352
RG+S Q+KRLT G + LF+DE ++GLDS ++IV L+ + +G A++ +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILCT 164
Query: 353 LLQPAPETYDLFDDIILL-SDGQIVYQG 379
+ QP+ ++ FD ++LL G+ VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 33/220 (15%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQ 890
D L G++ G + AL+G +GAGK+TL G + T SG + I G P K
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 891 ETFTRIS-----GYCEQN---DIHSPLVTVYESLLYSAWLRL---RTEVDSETRKMFIEE 939
+ + + G QN + +P TV E + + L L + EV+ ++
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-LNLGLSKEEVEKRVKEALKAV 125
Query: 940 IMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999
ME E KP LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 126 GMEGFENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 1000 VMRTVKNTVETGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1038
+M+ + + + G T++ + H +D+ + D++++M G
Sbjct: 176 IMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-11
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 29/168 (17%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITISGYPKKQETF 893
L +S + + G L+G SG GKTTL+ ++AG R+T G Y G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD-ITRLPPQKRDY 78
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV-ELKPLRQS 952
G Q+ P +TV +++ Y + R M E+ E V EL
Sbjct: 79 ----GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LD 120
Query: 953 LVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
LVGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-11
Identities = 64/256 (25%), Positives = 110/256 (42%), Gaps = 56/256 (21%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-- 197
L +S +I+PG L+G SGK+TL+ + + SG++ +GHD+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 198 -RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
R A +SQ DV + T+ +A+ Q D A E+
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQ-----ADR----AEIERAL----------- 443
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
A D+ V L + DT +G+ V +SGGQ++RL ++ A
Sbjct: 444 --------AAAY-AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI 490
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVI----SLLQPAPETYDLFDDIILL 370
L +DE ++ LD+ + + +L ++ G T VI S ++ A D I+++
Sbjct: 491 LILDEATSALDNESERLVQAALE---RLMQGRTTLVIAHRLSTIEKA-------DRIVVM 540
Query: 371 SDGQIVYQGPCELVLD 386
DG+IV +G +L
Sbjct: 541 DDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 41/178 (23%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISG---YP 887
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 888 KKQETF---TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
K + R+ G Q P+ ++Y+++ Y LRL D E + E+V
Sbjct: 79 PKVDVVELRRRV-GMVFQKPNPFPM-SIYDNVAYG--LRLHGIKDKE--------LDEIV 126
Query: 945 ELKPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
E L++ L E GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 127 E-SSLKK--AALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 34/226 (15%)
Query: 852 ALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS---GYCEQN---DI 905
A++G +GAGK+TL G SG++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965
SP TV + + + + +D ET + + ++ L+ LR + LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGG 141
Query: 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSID 1024
++KR+ IA + P ++ +DEPT+GLD + ++ + + ET G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1025 IFEAFDELFLMKRGG-------QEIYVGPLGSNSSDLISYLQL-MP 1062
+ E D +++M +G +EI++ P DL++ + L +P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP------DLLARVHLDLP 240
|
Length = 277 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 30/208 (14%)
Query: 853 LMGVSGAGKTTLMDVLAGRKT---GGYISGNITISGYPKKQETFTRISGYCEQNDIHSPL 909
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969
+TV E++ + L++R +V K + E + LV+L+ LS Q++R
Sbjct: 57 MTVEENVAFG--LKMR-KVPRAEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQR 108
Query: 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEA 1028
+ +A LV P I+ +DEP S LD + + +K E G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 1029 F---DELFLMKRG-------GQEIYVGP 1046
D + +M++G +EIY P
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 27/204 (13%)
Query: 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG--YPKKQETFTRISGYCE 901
F G +TA++G SG+GK+TL++++AG +T SG + I+G +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 902 QNDIHSPLVTVYES--LLYSAWLRLRTE----VDSETRKMFIEEIMELVELKPLRQSLVG 955
+N++ + L TV ++ L S L+L E ++ ++ + + R
Sbjct: 78 ENNLFAHL-TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVKNTVETGRTV 1014
LPGE LS +R+R+ +A LV + ++ +DEP + LD A A ++ + ET TV
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV 182
Query: 1015 VCTIHQPSIDIFEAFDELFLMKRG 1038
+ HQP D + + G
Sbjct: 183 LMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 18/208 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI-----SGYPKKQET 892
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 893 FTRIS-GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
R + GY Q +T +++ + L L+ + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ET 1010
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ E
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 7e-11
Identities = 51/159 (32%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP-KKQETFTRI 896
L GVS G +T ++G +G GKTTL+ L G SG+I + G K R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIRLDGEDITKLPPHERA 73
Query: 897 S---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE-LKPLRQS 952
Y Q P +TV E+LL R + +EI EL LK +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRS------RKIPDEIYELFPVLKEMLGR 127
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991
G LS Q+++L IA LV P ++ +DEPT G
Sbjct: 128 RGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR 895
LL VS PG L+G +GAGK+TL+ +LAG SG +T K
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTR----PKGLRV-- 68
Query: 896 ISGYCEQNDIHSPLVTVYESLL--YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
GY Q P TV + ++ + L E++ + + L EL+ L + L
Sbjct: 69 --GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 954 ---------------VGLPGE----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
+G P E S LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 995 RA 996
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 46/241 (19%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
T L D++ I G +LLGP GKTT L +AG + + SGR+ G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
R A + Q+ MTV + +AF + + V E+ R +E
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-----EIDERVREVA---------- 115
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
++L ++ + D + +SGGQ++R+ G +V
Sbjct: 116 -------------------ELLQIEH-----LLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 317 LFMDE-ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
MDE +SN LD+ + L+ + GT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSN-LDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
Query: 376 V 376
Sbjct: 210 Q 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 23/251 (9%)
Query: 827 LKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886
L G + VL VS + G L+G SG GK+TL +L G + G ++ G
Sbjct: 17 LFGAKQRAPVL-TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQ 73
Query: 887 P------KKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIE 938
K++ F R Q+ + P +TV + + LR T +D +K I
Sbjct: 74 DLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIA 131
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
E++++V L+ + LP + LS Q +R+ IA L P +I +DE S LD A
Sbjct: 132 ELLDMVGLRS--EDADKLPRQ--LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187
Query: 999 IVMRTVKNTVETGRTVVCTIHQPSIDIFEAF-DELFLMKRGG--QEIYVGPLGSNSSDLI 1055
+++ ++ + T I + + ++F + +M +G +E V L S
Sbjct: 188 VILELLRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAG 246
Query: 1056 SYLQ--LMPMH 1064
LQ ++P H
Sbjct: 247 RNLQSAVLPEH 257
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 58/238 (24%), Positives = 100/238 (42%), Gaps = 28/238 (11%)
Query: 818 SADMPKEMKLKGV---HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 874
++LK V K +L + +S PG A++G +GAGKTTL+ +L G
Sbjct: 25 IEINEPLIELKNVSVRRNGKKILGD-LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83
Query: 875 GYISGNITISGYPKKQETFT-----RISGYC--EQNDIHSPLVTVYESLLYSAWL----R 923
SG++T+ G + RI G E ++ TV + +L S +
Sbjct: 84 S--SGDVTLLGRRFGKGETIFELRKRI-GLVSSELHERFRVRETVRDVVL-SGFFASIGI 139
Query: 924 LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSII 983
+ ++ +E + ++EL+ K L G LS +++R+ IA LV +P ++
Sbjct: 140 YQEDLTAEDLAA-AQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELL 193
Query: 984 FMDEPTSGLDARAAAIVMRTV--KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039
+DEP GLD A ++ + ++ H +I F L+K G
Sbjct: 194 ILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 65/257 (25%), Positives = 97/257 (37%), Gaps = 46/257 (17%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
L K ++ VS ++ G + LLGP +GKTT + L L + SGR T GH
Sbjct: 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGH 62
Query: 190 DM--NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
D+ +R + Q E+T E L AR GV E R E
Sbjct: 63 DVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRERIDEL-- 115
Query: 248 KPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG 307
L +GL D +V+ SGG ++RL
Sbjct: 116 ---------------------------LDFVGL-----LEAADRLVKTYSGGMRRRLEIA 143
Query: 308 EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367
+V LF+DE + GLD T H+ + + + G ++ E L D +
Sbjct: 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRV 202
Query: 368 ILLSDGQIVYQG-PCEL 383
++ G+I+ +G P EL
Sbjct: 203 AIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 50/237 (21%)
Query: 149 PGRMTLLLGPPSSGKTTLLLALAGQLDS----SLKVSGRVTYNGHDMNEFVP--QRTAAY 202
+T + G +GK+TLL +AG L+ ++ ++G V +P QR
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTV-LFDSRKKINLPPQQRKIGL 79
Query: 203 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAAT 262
+ Q + VRE LAF + + + EL
Sbjct: 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDEL------------------------ 115
Query: 263 EGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEI 322
L +LGLD + + +SGG+K+R+ + L +DE
Sbjct: 116 ------------LDLLGLDH-----LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158
Query: 323 SNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
+ LD + ++ L+Q LN VI + E L D I+++ DG++ Y G
Sbjct: 159 FSALDRALRLQLLPELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 64/256 (25%), Positives = 95/256 (37%), Gaps = 53/256 (20%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
I+ V PG +T LLGP SGK+TLL LAG L +G V G D++ +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 198 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
A A + Q +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
A + + D L L A D + +SGG+++R+ V A
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLA-----DRDMSTLSGGERQRVH-----VARA 151
Query: 315 LA-----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369
LA L +DE +N LD + +R+ G V++ L D +++
Sbjct: 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVV 209
Query: 370 LSDGQIVYQGPCELVL 385
L G++V GP VL
Sbjct: 210 LDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 65/267 (24%), Positives = 111/267 (41%), Gaps = 61/267 (22%)
Query: 124 FNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGR 183
F ++ + + ILK +S I PG+ L+G GK+T++ L D + SG
Sbjct: 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGE 59
Query: 184 VTYNGHDMNEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELAR 240
+ +G D+ + + +SQ + + + T+ E + + G E+
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRY-------GKPDATDEEVEE 111
Query: 241 REKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG--ISG 298
K+A I FI M L D Y DTLVG+ RG +SG
Sbjct: 112 AAKKANI--HDFI---MS-----------LPDGY----------DTLVGE---RGSQLSG 142
Query: 299 GQKKRLTTGEMMV-GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI-----S 352
GQK+R+ ++ P + L +DE ++ LD+ + +V + T ++ S
Sbjct: 143 GQKQRIAIARALLRNPKI-LLLDEATSALDAESE-KLVQEALDRA-MKGRTTIVIAHRLS 199
Query: 353 LLQPAPETYDLFDDIILLSDGQIVYQG 379
++ A D I +L +GQ+V QG
Sbjct: 200 TIRNA-------DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 32/228 (14%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-NITISGYPKKQETFTRI 896
L+ V G + AL+G SG+GK+TL+ L+G TG +G +I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG--RL 77
Query: 897 SGYCEQNDIHSPLV----------TVYESLLYSA------WLRLRTEVDSETRKMFIEEI 940
+ ++ ++ + +V E++L A W RT TR+ +
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW---RTCFSWFTREQKQRAL 134
Query: 941 MELVELKPLRQSLVGLPGE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
L R +V + S LS Q++R+ IA L+ +I DEP + LD +A
Sbjct: 135 QALT-----RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESAR 189
Query: 999 IVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045
IVM T+++ + G TVV T+HQ +D + E + R G Y G
Sbjct: 190 IVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 28/215 (13%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+LN +S + G +TAL+G +G GK+TL+ A T SG + + P + ++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 897 SGYCE---QNDIHSPLVTVYESLLY------SAWLRLRTEVDSETRKMFIEEIMELVELK 947
+ Q+ + +TV E + Y S W RL S + + ME +
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRIN 129
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR ++
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1008 VETGRTVVCTIHQPSIDIFEA---FDELFLMKRGG 1039
G+TVV +H D+ +A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-10
Identities = 65/255 (25%), Positives = 112/255 (43%), Gaps = 55/255 (21%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP--- 196
L +VS I+PG ++G SGK+TLL L G + G V +G D+ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
+R Y+ Q D + T+R+ +A A P +
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGA-------------------------PYADDEEI 571
Query: 257 MKAAATEGQEANVLTDYY-LKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG-PA 314
++AA G +T++ GL D +G E R +SGGQ++ + ++ P
Sbjct: 572 LRAAELAG-----VTEFVRRHPDGL----DMQIG-ERGRSLSGGQRQAVALARALLRDPP 621
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIH---ILNGTAVISLLQPAPETYDLFDDIILLS 371
+ L +DE ++ +D+ + + L++ + ++ T SLL DL D II++
Sbjct: 622 I-LLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-------DLVDRIIVMD 673
Query: 372 DGQIVYQGPCELVLD 386
+G+IV GP + VL+
Sbjct: 674 NGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 18/195 (9%)
Query: 829 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGY 886
D L +G+S G + G +G+GKTTL+ +LAG G + N
Sbjct: 7 TCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PL 64
Query: 887 PKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
++++ R Y ++V E+L + + E +EE + V L
Sbjct: 65 DFQRDSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEEALARVGL 115
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 116 NGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170
Query: 1007 TVETGRTVVCTIHQP 1021
G VV T HQ
Sbjct: 171 HCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 73/282 (25%), Positives = 114/282 (40%), Gaps = 77/282 (27%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
T + D+S IK G LLGP GKTTLL +AG S SG + +G D+ + VP
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPP 74
Query: 197 -QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
+R + Q H MTV E +AF + + ++ K+A I
Sbjct: 75 EKRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEI-- 113
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
KA E L+++GL+ D +SGGQ++R+
Sbjct: 114 --------KARVEE----------ALELVGLEG-----FADRKPHQLSGGQQQRVALARA 150
Query: 310 MVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD------L 363
+V L +DE + LD+ + L++ L T V T+D +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-------THDQEEALAM 203
Query: 364 FDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405
D I +++DG+I G E + ++ P + VADF+
Sbjct: 204 SDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 2e-10
Identities = 57/269 (21%), Positives = 106/269 (39%), Gaps = 49/269 (18%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
T+L D+S I+ G + L+G GKTTLL A+AG + ++ ++GR+ D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
+R A + Q+ + V + +AF R Q + ++A R +A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAERVADA----------- 121
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
LK++GL D + +SGG ++R+ +
Sbjct: 122 ------------------LKLVGL---GD--AAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376
L +DE + LD++ ++ + L ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 377 YQGPCELVLDFFESMGFKCPERKSVADFL 405
G + + D P A+FL
Sbjct: 219 AHGEPQALYD--------APADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 50/192 (26%)
Query: 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869
L F++V+ ++ +LL +S G A++G +GAGK+TL+ +LA
Sbjct: 322 LEFENVSKG------------YDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369
Query: 870 GRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD 929
G G +SG + + G K GY +Q+ +T ++
Sbjct: 370 G--ELGPLSGTVKV-GETVK-------IGYFDQH--------------RDELDPDKTVLE 405
Query: 930 SETRKMFIEEIMELVELKPLRQSL--VGLPGE------SGLSTEQRKRLTIAVELVANPS 981
+ E + + +R L G GE LS ++ RL +A L+ P+
Sbjct: 406 ------ELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPN 459
Query: 982 IIFMDEPTSGLD 993
++ +DEPT+ LD
Sbjct: 460 LLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 23/211 (10%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKK----- 889
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 890 -QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP 948
Q+ T Q+ T +S + + L TR+ ++E + LV+ +
Sbjct: 76 RQQVATVF-----QDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQH 128
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008
R + LS Q+KR+ IA LV + +DEPT+GLD ++ ++ V
Sbjct: 129 FRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
Query: 1009 ETGRTVVCTIHQPSID-IFEAFDELFLMKRG 1038
G V+ + H ID I+E D ++++++G
Sbjct: 184 AQGNHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 18/203 (8%)
Query: 826 KLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI 883
++K +H+ +L G+ + G + ++G SG+GK+TL+ + + SG I I
Sbjct: 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIII 59
Query: 884 SG----YPKKQETFTRIS-GYCEQNDIHSPLVTVYESLLYS-AWLRLRTEVDSETRKMFI 937
G KK R G Q P +TV E++ + ++ ++ ++E R +
Sbjct: 60 DGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL-- 117
Query: 938 EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
E++E V L + P + LS Q++R+ IA L NP ++ DEPTS LD
Sbjct: 118 -ELLEKVGLADKADAY---PAQ--LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171
Query: 998 AIVMRTVKNTVETGRTVVCTIHQ 1020
V+ +K+ E G T+V H+
Sbjct: 172 GEVLDVMKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQN---D 904
G + AL+GV+G+GK+TL L G SG I+I G P +Q + Y Q+ D
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 905 IHSPL----VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960
P+ V + + WLR + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
LS Q+KR+ +A + +I +DEP +G+D + A ++ ++ + G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+ +S + G +L GP SGKTTLL +AG L +G + +G D+++
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVA 72
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQG 227
Y+ + +TV E L F A G
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG 102
|
Length = 207 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 69/260 (26%)
Query: 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF- 194
+LKDVS I G+ ++GP SGK+T+L L D S SG + +G D+ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVT 69
Query: 195 ----------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKE 244
VPQ T + +D T+ + +
Sbjct: 70 LDSLRRAIGVVPQDTVLF---ND------TIGYNIRYG---------------------- 98
Query: 245 AGIKPDLFIDVFMKAAATEGQ--EANVLTDYYLKVLGLDVCADTLVGDEMVRG--ISGGQ 300
+PD AT+ + EA + K++ DT+VG+ RG +SGG+
Sbjct: 99 ---RPD----------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE---RGLKLSGGE 142
Query: 301 KKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET 360
K+R+ ++ L +DE ++ LD+ T I +LR + G I +
Sbjct: 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD---VSKGRTTIVIAHRLSTI 199
Query: 361 YDLFDDIILLSDGQIVYQGP 380
+ D II+L DG+IV +G
Sbjct: 200 VNA-DKIIVLKDGRIVERGT 218
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 56/185 (30%), Positives = 91/185 (49%), Gaps = 28/185 (15%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG---------YPK 888
LN VS F P +TAL+G SG+GK+TL+ + ++ +TI+G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSI---NRMNDLNPEVTITGSIVYNGHNIYSP 77
Query: 889 KQET--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV-- 944
+ +T + G Q P+ ++YE+++Y LRL+ D + +E+ ++
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFPM-SIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 945 --ELKP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
E+K L S +GL G Q++R+ IA L +P II +DEPTS LD +A +
Sbjct: 135 WDEVKDRLHDSALGLSGG------QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIE 188
Query: 1002 RTVKN 1006
T+
Sbjct: 189 ETLLG 193
|
Length = 252 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 36/216 (16%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT 894
L+ S +PG AL+G SG+GK+T+ ++AG + SG I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW----SGEILFDGIPREEIPRE 549
Query: 895 RISG---YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
++ +Q DI TV ++L + W + +++ + +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLW----------DPTIPDADLVRACKDAAIHD 596
Query: 952 SLVGLPG-------ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1002
+ PG E G LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 597 VITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD 656
Query: 1003 TVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
N G T + H+ S I + DE+ +++RG
Sbjct: 657 ---NLRRRGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 27/222 (12%)
Query: 847 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT---RISGYCE 901
G+ TAL G SG+GKT+L++++AG R G I N + +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 902 QNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961
Q+ P TV +L Y W ++ + ++++ L+ ++ L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDRYPGT-- 128
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQ 1020
LS +++R+ I L+ P ++ MDEP + LD ++ ++ E ++ H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH- 187
Query: 1021 PSID-IFEAFDELFLMKRGGQEIYVGPLGS--NSSDLISYLQ 1059
S+D + D + +++ G + GPL S D +L
Sbjct: 188 -SLDEVLRLADRVVVLENGKVKAS-GPLEEVWGSPDFPPWLP 227
|
Length = 352 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 39/230 (16%)
Query: 825 MKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIS 878
++L+ V + + L+ ++ G L+G SG GKTT + ++AG T G YI
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 879 GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR----TEVDSETRK 934
G PK R QN P +TVY+++ + L+LR E+D R+
Sbjct: 61 GRDVTDLPPKD-----RDIAMVFQNYALYPHMTVYDNIAFG--LKLRKVPKDEIDERVRE 113
Query: 935 MF-IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
+ + +I L++ KP LS QR+R+ + +V P + MDEP S LD
Sbjct: 114 VAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
Query: 994 ARAAAIVMRT--VKNTVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
A+ + MR + G T + H D EA D + +M G
Sbjct: 163 AK-LRVQMRAELKRLQQRLGTTTIYVTH----DQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 34/217 (15%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY---PKKQET 892
+LNG+S G A++G SGAGK+T++ +L SG+ITI G Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 893 FTRISGYCEQ-----NDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK 947
R G Q ND T+ ++ Y R + +E + E ++
Sbjct: 335 LRRAIGIVPQDTVLFND------TIAYNIKYG-----RPDATAEE----VGAAAEAAQIH 379
Query: 948 PLRQSL-VGLP---GESGL--STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
QSL G GE GL S +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439
Query: 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
++ V GRT + H+ S I +A DE+ ++ G
Sbjct: 440 AALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 33/219 (15%)
Query: 825 MKLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNI 881
+K+K +H EDK +L GV+ + G + A+MG +G+GK+TL +AG + SG I
Sbjct: 1 LKIKDLHVSVEDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
Query: 882 TISGYPKKQETFTRISGYCE----------QNDIHSPLVTVYESLLYSAWLRLRTEVDSE 931
G + + E Q P V+ E L SA R+ E
Sbjct: 60 LFKG-----QDLLELEPD-ERARAGLFLAFQYPEEIPGVSNLE-FLRSALNARRSARGEE 112
Query: 932 TRKMF-----IEEIMELVELKP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIF 984
+ ++ + L+ + L +S+ G S ++KR I + P +
Sbjct: 113 PLDLLDFLKLLKAKLALLGMDEEFLNRSV-----NEGFSGGEKKRNEILQMALLEPKLAI 167
Query: 985 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
+DE SGLD A IV + E R+ + H +
Sbjct: 168 LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 47/253 (18%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
IL D+S + G++T L+GP GK+TLL A L SG V ++ +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 198 RTAAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
+ A ++ QH + +TVRE +A+ R L+ R
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY--------GRSPWLSLWGRL------------- 111
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
E N + ++ ++ AD + D +SGGQ++R ++
Sbjct: 112 ---------SAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILN--GTAVISLLQPAPETYDLFDDIILLSD 372
+ +DE + LD + ++ +R+ LN G V+++L + D +++L++
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRE----LNTQGKTVVTVLHDLNQASRYCDHLVVLAN 213
Query: 373 GQIVYQGPCELVL 385
G ++ QG E V+
Sbjct: 214 GHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 44/224 (19%)
Query: 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYC 900
VS PG + ++G SG+GKTTL+ ++GR T +G +T Y + +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVT---YRMRDGQPRDLYTMS 79
Query: 901 EQNDIHSPLVTVYESLLYSAW----------LRLRTEVDSET--RKMFI----------- 937
E LL + W LR++ R M I
Sbjct: 80 EAER---------RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE 130
Query: 938 -EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
++ +E VE+ R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 131 AQDWLEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 186
Query: 997 AAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039
A ++ ++ V E G VV H ++ A D L +MK+G
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 9e-10
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 36/202 (17%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGNITISGYPKKQ---ET 892
L+ VS RPG A++G G+GK+TL+ +L G Y G++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 893 FTRISGYCEQNDIHSPLV--TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
R GY Q+ L T+ +++ A + EEI+ EL +
Sbjct: 537 LRRNIGYVPQD---PRLFYGTLRDNIALGA--PYADD----------EEILRAAELAGVT 581
Query: 951 QSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
+ + P GE G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 582 EFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK 641
Query: 1002 RTVKNTVETGRTVVCTIHQPSI 1023
+K + G+T+V H+ S+
Sbjct: 642 DRLKRWLA-GKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 32/191 (16%)
Query: 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR--ISGYCE 901
G + A++G SGAGK+TL++++AG +T SG I I+G +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 902 QNDIHSPLVTVYES--LLYSAWLRL----RTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
+N++ + L TV ++ L S L+L R +V++ ++ + ++
Sbjct: 79 ENNLFAHL-TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR------------ 125
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVKNTV--ETG 1011
LPGE LS QR+R+ +A LV I+ +DEP S LD RA M + + + E
Sbjct: 126 LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERK 180
Query: 1012 RTVVCTIHQPS 1022
T++ H P
Sbjct: 181 MTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 9e-10
Identities = 59/242 (24%), Positives = 116/242 (47%), Gaps = 33/242 (13%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
++ FD+V+Y+ + + +H+ V+ F G A++G +G+GK+TL+ +
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHD--------VNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
Query: 869 AG--RKTGGYIS-GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVY---ESLLYSAWL 922
+ T G ++ +ITI+ K ++ + R + + V+ ES L+ +
Sbjct: 54 NALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFEDTV 103
Query: 923 RLRTEVDSETRKMFIEEIME-----LVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV 977
+ KM ++E+ L++L R + P + +S Q +++ I L
Sbjct: 104 EREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ--MSGGQMRKIAIVSILA 161
Query: 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036
NP II +DEPT+GLD ++ VMR +K+ + +T++ H + ++ DE+ +MK
Sbjct: 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK 220
Query: 1037 RG 1038
G
Sbjct: 221 EG 222
|
Length = 286 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-09
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T+L D+S I+ G + +LGP +GK+TLL LAG L S SG + +G D+ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 198 ---RTAAYISQ 205
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 69/270 (25%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHDMNEFVP 196
++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G D+
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 197 Q-------RTAAYISQHDVHI--GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
+ + A I Q + MT+ D + E R +
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIG----------------DQIREALRLHGKG-- 124
Query: 248 KPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG 307
EA L+ +GL D D +SGG ++R+
Sbjct: 125 ---------------SRAEARKRAVELLEQVGLP---DPERRDRYPHQLSGGMRQRV--- 163
Query: 308 EMMVGPALA-----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD 362
M+ ALA L DE + LD +T I++ L+ ++ G AV+ + T+D
Sbjct: 164 --MIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQRELGMAVLFI------THD 214
Query: 363 L------FDDIILLSDGQIVYQGPCELVLD 386
L D ++++ G+IV GP E +L
Sbjct: 215 LGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 52/267 (19%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-R 198
LK+VS ++ G ++LGP SGK+ LL +AG + SG++ NG D+ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
+Y+ Q+ MTV + +A+ G+ R E+ R+ E I L ID
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERKVLE--IAEMLGID---- 120
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
++L + +SGG+++R+ +V L
Sbjct: 121 ---------HLL-------------------NRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 319 MDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
+DE + LD T + L++ I G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 379 GPCELVLDFFESMGFKCPERKSVADFL 405
G E V FK P+ + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 55/247 (22%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS----SLKVSGRVTYNGHDMNEF 194
+L D++ I PG + +L GP SGKTT LL L G L S SLKV G+ G E
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQ-ELYGASEKEL 77
Query: 195 VP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
V +R YI Q +G +T R+ + + ++ L+ +E
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQEARE-------- 120
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM---VRGISGGQKKRLTTGEMM 310
+A A L+ +GL GD + +SGGQK+R+ +
Sbjct: 121 ----RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARAL 156
Query: 311 VG-PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369
V P L + DE + LDS + +V +++ G ++ ++ D+ D I+
Sbjct: 157 VHRPKL-VLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADRIVH 213
Query: 370 LSDGQIV 376
+ DG+++
Sbjct: 214 MEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 82/287 (28%), Positives = 125/287 (43%), Gaps = 52/287 (18%)
Query: 126 SIHILTTKKK--HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGR 183
SI I KK +L D+S I G+M LLGP SGKTTLL +AG L+ + SG
Sbjct: 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGH 58
Query: 184 VTYNGHDMNEF-VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARRE 242
+ ++G D++ R ++ QH MTV + +AF LT L RRE
Sbjct: 59 IRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRE 106
Query: 243 KEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302
+P+ AA + L L+++ L AD +SGGQK+
Sbjct: 107 -----RPN---------AAAIKAKVTQL----LEMVQLAHLADRYPAQ-----LSGGQKQ 143
Query: 303 RLTTGEMM-VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETY 361
R+ + V P + L +DE LD+ + LRQ L T+V + E
Sbjct: 144 RVALARALAVEPQI-LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAM 201
Query: 362 DLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEV 408
++ D ++++S G I G + V ++ P + V +F+ EV
Sbjct: 202 EVADRVVVMSQGNIEQAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-09
Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 832 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK-- 889
D ++L+ VS PG A++G SG+GK+TL+ +L G +T SG++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 890 -QETFTRISGYCEQNDIHSPLVT--VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
+ R G QN L++ ++E++ A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQN---GRLMSGSIFENIAGGAPLTL-------------DEAWEAARM 564
Query: 947 KPLRQSLVGLP---------GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
L + + +P G LS QR+RL IA LV P I+ DE TS LD R
Sbjct: 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624
Query: 998 AIVM 1001
AIV
Sbjct: 625 AIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 840 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYISGNITISG---YPKKQE-- 891
V+ + G + AL+G SG GKTT + + + G ++G I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 892 TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
R G Q P ++V+++++ A L+L D + E + L +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
+ P +GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 140 DRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 827 LKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNIT-I 883
L G H+ + VL N VS + + G AL+G SG GK+TL +L G + G +S +
Sbjct: 18 LSGKHQHQTVL-NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76
Query: 884 SGYPKKQ-ETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEI 940
+ + Q + F R Q+ I + P TV E + LR +D R E+
Sbjct: 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEM 134
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
+ V+L L P + LS Q +R+ +A L P ++ +DE S LD
Sbjct: 135 LRAVDLDD--SVLDKRPPQ--LSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 27/223 (12%)
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS 884
M+L V E L +SG R G + L+G +GAGK+TL+ +AG +G SG+I +
Sbjct: 4 MQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 885 GYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
G P + R Y Q + V W L +TR + ++
Sbjct: 59 GQPLEAWSATELARHRAYLSQQQTPPFAMPV--------WHYLTLHQPDKTRTELLNDVA 110
Query: 942 ELVEL-KPLRQSLVGLPGESGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 995
+ L L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ + R + + G +V + H + + A +L+KRG
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 29/200 (14%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQ 890
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 891 ETFTRISGYCEQNDIHSPLVTV-YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
IS Y E +HS + V E +L++ L+ ++ E + E +
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 950 RQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
+ L GE G LS Q++R+ IA L+ NP ++ +DE TS LDA + V
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 1001 MRTVKNTVETGRTVVCTIHQ 1020
+ + + E RTV+ H+
Sbjct: 190 QQALYDWPER-RTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 16/200 (8%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQET--FTRISGYC 900
+ G TAL+G +G+GK+TL+ L G + T G ++ G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 901 EQNDIHSPLVTVYESLLYS--AWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG 958
Q P ++E + A+ + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSPF 143
Query: 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1018
E LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ ++ ++G+TVV
Sbjct: 144 E--LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1019 HQPSIDIFEAFDELFLMKRG 1038
H D+ + D ++L+++G
Sbjct: 202 HLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 38/222 (17%)
Query: 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS- 897
VS PG + ++G SG+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 898 -----------GYCEQNDIH------SPLVTVYESLLYSA---WLRLRTEVDSETRKMFI 937
G+ QN S + E L+ + +R T + ++
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----ATAQDWL 132
Query: 938 EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
EE VE+ P R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 133 EE----VEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ 184
Query: 998 AIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
A ++ ++ V + G V+ H + A L +M++G
Sbjct: 185 ARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-09
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
+T L+D+S ++ G L+GP GK+TLL +AG + SG V +G +
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPV 68
Query: 192 NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 231
P Y+ Q D + +TV + +A QGV
Sbjct: 69 TG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 49/251 (19%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH-----DMN 192
IL D+S + PG ++GP +GKTTLL L G+ S SG VT G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 193 EFVPQRTAAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
+ ++ +S + E TVR+ + S +G + LT
Sbjct: 102 FEL-RKRIGLVSSELHERFRVRE-TVRDVVL-SGFFASIGIYQEDLTAE----------- 147
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
AAA L++LG AD G +S G+++R+
Sbjct: 148 -------DLAAAQW----------LLELLGAKHLADRPFGS-----LSQGEQRRVLIARA 185
Query: 310 MVG-PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368
+V P L L +DE + GLD ++N L + A++ + A E F +
Sbjct: 186 LVKDPEL-LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244
Query: 369 LLSDGQIVYQG 379
LL +G++V QG
Sbjct: 245 LLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 40/183 (21%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISG---YP 887
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 888 KKQETF---TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
KK + R+ G Q P+ ++Y+++ Y RL D K ++EI+E
Sbjct: 73 KKIDVVELRRRV-GMVFQKPNPFPM-SIYDNIAYG--PRLHGIKD----KKELDEIVE-- 122
Query: 945 ELKPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ L++ L E GLS Q++RL IA L P ++ +DEPTS LD
Sbjct: 123 --ESLKK--AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178
Query: 996 AAA 998
A
Sbjct: 179 ATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-09
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 22/215 (10%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS--GNITISGYPK 888
+ K L ++ G AL+G SGAGKT+L++ L G ++ G++ I+G
Sbjct: 360 PDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIEL 413
Query: 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
++ E++ + + QN P T+ +++L ++ ++ E + L
Sbjct: 414 RELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPL-- 470
Query: 946 LKPLRQSLVGLPGE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
L Q L G+ +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+
Sbjct: 471 ---LPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 1004 VKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ N +T + HQ ++ +D++++M+ G
Sbjct: 528 L-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-09
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 45/248 (18%)
Query: 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD---M 191
+LKD+S I+PG ++GP SGK+TL+ L D + SG + +G D +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 192 NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
+ ++ +SQ D + T+RE +A G E+ K A
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAH--- 445
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311
+ L D Y DT+VG E +SGGQ++RL ++
Sbjct: 446 --EFIAN-----------LPDGY----------DTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371
L +DE ++ LD+ T I ++L++ + T +I + + T D II+L
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLD 537
Query: 372 DGQIVYQG 379
+G+IV +G
Sbjct: 538 NGRIVERG 545
|
Length = 567 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 66/263 (25%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 198 RTAAYIS---QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
A +S Q + +TVR+ + F R+ R KE + I+
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF--------GRFPY--SQGRLTKEDRRIINEAIE 121
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
L+D YL L SGGQ++R +
Sbjct: 122 YL---------HLEDLSDRYLDEL------------------SGGQRQR-----AFIAMV 149
Query: 315 LA-----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL------ 363
LA + +DE N LD + I+ LR+ L T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 364 FDDIILLSDGQIVYQGPCELVLD 386
D I+ L +G++V QG + ++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 60/269 (22%), Positives = 98/269 (36%), Gaps = 71/269 (26%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
+T IL V + G + +LG SGK+TLL + G L G + +G
Sbjct: 14 VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGE 70
Query: 190 DMNEFVPQRTAA------YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREK 243
D+ + + + Q +TV E +AF R T+L
Sbjct: 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR---------EHTKLPESLI 121
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
+L V MK L+++GL D +SGG +KR
Sbjct: 122 R-----EL---VLMK----------------LELVGL----RGAAADLYPSELSGGMRKR 153
Query: 304 LTTGEMMVGPALA---------LFMDEISNGLD--SSTTF-HIVNSLRQNIHILNGTAVI 351
+ ALA LF+DE ++GLD S+ ++ L + G VI
Sbjct: 154 V---------ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL----GLTVI 200
Query: 352 SLLQPAPETYDLFDDIILLSDGQIVYQGP 380
+ + D + +L+DG+++ +G
Sbjct: 201 MVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 6e-09
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%)
Query: 826 KLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI 883
++K + + +L G+S + G + ++G SG+GK+TL+ L G + SG+IT+
Sbjct: 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITV 61
Query: 884 SG----YPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEE 939
G K R G Q P +TV E++ + +V ++ E+
Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP-----VKVKKLSKAEAREK 116
Query: 940 IMELVELKPLRQSLVGLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
+EL+E VGL + + LS Q++R+ IA L +P ++ DEPTS LD
Sbjct: 117 ALELLEK-------VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP 169
Query: 995 RAAAIVMRTVKNTVETGRTVVCTIHQ 1020
V+ +K+ E G T++ H+
Sbjct: 170 ELVGEVLDVMKDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 64/262 (24%), Positives = 99/262 (37%), Gaps = 67/262 (25%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG--------H 189
LK+++ I PG ++GP +GK+TLL + ++ S SG + G
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 190 DMNEFVPQRTAAYISQHDVHIGEMTVRET-----LAFSARCQGVGSRYDMLTELARREKE 244
+ + +R I QH I +TV E L + + + R+ + +KE
Sbjct: 73 KLRKL--RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF------SEEDKE 124
Query: 245 AGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRL 304
A E L D + AD L SGGQ++R+
Sbjct: 125 ---------------RALSALERVGLADKAYQR------ADQL---------SGGQQQRV 154
Query: 305 TTGE-MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG-TAVISLLQPAPETYD 362
+ P L L DE LD T+ V + I+ +G T +I+L Q D
Sbjct: 155 AIARALAQQPDLIL-ADEPIASLDPKTS-KQVMDYLKRINKEDGITVIINLHQ-----VD 207
Query: 363 L----FDDIILLSDGQIVYQGP 380
L D I+ L G+IV+ G
Sbjct: 208 LAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 18/201 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L GV+ + G +L+G SG GK+TL+++++G SG + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT--SGGVILEGKQITEPGPDRMV 58
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
+ QN P +TV E+ + A R+ ++ R+ +EE + LV L ++ P
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR-TVVC 1016
G+ LS ++R+ IA L P ++ +DEP LDA + + E R TV+
Sbjct: 113 GQ--LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 1017 TIHQPSIDIFEAFDELFLMKR 1037
H D+ EA L L R
Sbjct: 171 VTH----DVDEA---LLLSDR 184
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 9e-09
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ISGNITISG-----YPKKQ 890
LL V+ G + LMG SG GK+TL+ + G G + +G + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
R G Q+ + P ++V ++LL++ L + R+ +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
+ LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 54/246 (21%), Positives = 96/246 (39%), Gaps = 53/246 (21%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T L D+S ++ G + LLGP +GKTT + + G + SG V ++G + + +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPL-DIAAR 69
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT-TGEMMVGPALA 316
D +L+ L L A ++ V +S G ++++ ++ P L
Sbjct: 109 -------------IDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPEL- 149
Query: 317 LFMDEISNGLDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373
L +DE +GLD + + L + G VI +L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELAR-----AGKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 374 QIVYQG 379
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 59/296 (19%)
Query: 125 NSIHI-LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGR 183
N H+ L+ + K + L+DVS I G + ++LGP GKTTLL +AG + S G
Sbjct: 5 NVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGS 61
Query: 184 VTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREK 243
+ NG + P + Q++ + + V + +AF + +G+ RRE
Sbjct: 62 IQLNGRRIEG--PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRRE- 111
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
+ L ++GL + + +SGG ++R
Sbjct: 112 --------------------------IAHQMLALVGL---EGA--EHKYIWQLSGGMRQR 140
Query: 304 LTTGE-MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD 362
+ + V P L L +DE LD+ T + L ++ G V+ + E
Sbjct: 141 VGIARALAVEPQL-LLLDEPFGALDALTREQM-QELLLDLWQETGKQVLLITHDIEEALF 198
Query: 363 LFDDIILLS--DGQIVYQGPCELVLDFFESMGFKCPER--KSVADFL---QEVTSR 411
L +++LS G++V + P LDF P R KS +F+ +EV
Sbjct: 199 LATRLVVLSPGPGRVVERLP----LDFARRYAAGEPSRAIKSDPEFIAMREEVLDE 250
|
Length = 259 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 62/256 (24%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
S+ F++V Y M+ KG L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 869 AGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEV 928
SG ITI+GY ET + +LR +V
Sbjct: 54 NALLKPS--SGTITIAGYHITPETGNK------------------------NLKKLRKKV 87
Query: 929 D-----SETRKMFIEEIMELVELKPLR----------QSL-----VGLPGESG------L 962
E ++F +++ VE P ++L VGL + L
Sbjct: 88 SLVFQFPEA-QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146
Query: 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022
S Q +R+ IA + P I+ +DEP +GLD +M+ K+ + G TV+ H
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206
Query: 1023 IDIFEAFDELFLMKRG 1038
D+ E D++ +++ G
Sbjct: 207 -DVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-08
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 38/243 (15%)
Query: 806 EPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 865
+ SLT ++V++ + +L G+S + G AL+G +G GK+TL+
Sbjct: 335 DQVSLTLNNVSF-----------TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 866 DVLAGRKTGGY--ISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESL-LYSAWL 922
+L T + G I ++G P I+ Y E + + V + + L+SA L
Sbjct: 384 QLL----TRAWDPQQGEILLNGQP--------IADYSEA-ALRQAISVVSQRVHLFSATL 430
Query: 923 R--LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP---GESG--LSTEQRKRLTIAVE 975
R L + + + IE +++ V L+ L + GL GE G LS +++RL IA
Sbjct: 431 RDNLLLAAPNASDEALIE-VLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARA 489
Query: 976 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035
L+ + ++ +DEPT GLDA ++ + +TV+ H+ + E FD + +M
Sbjct: 490 LLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQNKTVLMITHR--LTGLEQFDRICVM 546
Query: 1036 KRG 1038
G
Sbjct: 547 DNG 549
|
Length = 574 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 37/218 (16%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYISG-NITISGYPKK 889
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
+E + G Q P +T+ ++ L + RK E+ +EL++L L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPEL---LGWPEQERK---EKALELLKLVGL 119
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------ 1003
+ P E LS ++R+ +A L A P I+ MDE S LD ++R
Sbjct: 120 EEYEHRYPDE--LSGGMQQRVGLARALAAEPDILLMDEAFSALDP-----LIRDSMQDEL 172
Query: 1004 VKNTVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
K +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 2e-08
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET---FTRIS-GYC 900
F +TA +G +GAGKTT + +L G SG + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 901 EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960
Q++I +TV E +L+ A L+ R+ E ++ +E ++E L R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV---ETGRTVVCT 1017
LS +++L++A+ V + ++ +DEPTSG+D + R++ + + +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS----RRSIWDLLLKYRSGRTIIMS 1116
Query: 1018 IHQ 1020
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 59/272 (21%)
Query: 124 FNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGR 183
F +++ +KK +LKD++ IKPG ++GP +GKTTL+ L D G+
Sbjct: 5 FENVNFSYDEKKP--VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQ 59
Query: 184 VTYNG---HDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELAR 240
+ +G D++ + + Q D + T+ E + G E+
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRL-------GRPNATDEEVIE 111
Query: 241 REKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300
KEAG FI MK L + Y DT++G E +S G+
Sbjct: 112 AAKEAGA--HDFI---MK-----------LPNGY----------DTVLG-ENGGNLSQGE 144
Query: 301 KKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI------SLL 354
++ L M+ L +DE ++ +D+ T I +L + ++ G I S +
Sbjct: 145 RQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTI 201
Query: 355 QPAPETYDLFDDIILLSDGQIVYQGPCELVLD 386
+ A D I++L DG+I+ +G + +L
Sbjct: 202 KNA-------DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 66/278 (23%), Positives = 100/278 (35%), Gaps = 70/278 (25%)
Query: 126 SIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185
S T +T L DVS I G + ++G +GK+TLL + L+ SG V
Sbjct: 8 SKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERP--TSGSVF 64
Query: 186 YNGHDMNEF--VPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELA 239
+G D+ R I QH + TV E +AF GV
Sbjct: 65 VDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------P 114
Query: 240 RREKEAGIKPDL-FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298
+ E + + L + + KA Q +SG
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYPAQ------------------------------LSG 144
Query: 299 GQKKRLTTGEMMVGPALA-------LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI 351
GQK+R V A A L DE ++ LD TT I+ L+ I+ G ++
Sbjct: 145 GQKQR-------VAIARALANNPKILLCDEATSALDPETTQSILELLKD-INRELGLTIV 196
Query: 352 SLLQPAPE-TYDLFDDIILLSDGQIVYQGPCELVLDFF 388
L+ E + D + +L G++V +G V + F
Sbjct: 197 -LITHEMEVVKRICDRVAVLDQGRLVEEGT---VSEVF 230
|
Length = 339 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 32/217 (14%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L+GV + R G L L+G +GAGKTTL+ + G T +G + ++G + +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD-------------SETRKMFIEEIMEL 943
S + +V + S +R V+ +ET + +E ME
Sbjct: 76 S---------RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER 126
Query: 944 VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
+ V + LS +R+R+ +A L ++ +DEPT+ LD +
Sbjct: 127 TGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL 181
Query: 1004 VKNTVETGRTVVCTIHQPSIDIFEAF-DELFLMKRGG 1039
V+ V+ G+T V IH +D+ + DEL L+ G
Sbjct: 182 VRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 898 ---GYCEQN-DIHSPLVTVYESLLYSAW-LRL-RTEVDSETRKMFIEEIMELVELKPLRQ 951
G Q+ D TV++ + + + L + EV+ EE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
LS Q+KR+ IA L +P +I +DEP + LD R +M + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1012 RTVVCTIH 1019
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 36/217 (16%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L+ +S R G + ALMG +GAGK+TL+ +L+G +G+I I G + F +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 898 GYCEQN--DIH-----SPLVTVYESLLYSAWL-RLRTEVDSETRKMFIEEIME-LVEL-- 946
I+ P +TV E+L +L +L + R++ E E L L
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 947 -----KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
PL+ LS QR+ + IA L N +I DEPTS L AR +
Sbjct: 131 DIDPDTPLKY----------LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF 180
Query: 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
R ++ GR ++ H+ +IF D + + K G
Sbjct: 181 RVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 39/179 (21%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP-------KK 889
+L+ VS + G + A++G SG+GK+TL+ +L G T SG++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 890 QETFTRISGYCEQNDIHSPLVTVYES----LLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
E + G+ Q P T E+ LL + E++S +M
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK--KKPAEINSRALEML--------- 130
Query: 946 LKPLRQSLVGL-------PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
+ VGL P E LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 ------AAVGLEHRANHRPSE--LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 49/201 (24%), Positives = 71/201 (35%), Gaps = 47/201 (23%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187
H L + + + + G L+ G +GKTTLL LAG L SG++ +
Sbjct: 15 HALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQID 71
Query: 188 GHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
G R AY+ H+ G+
Sbjct: 72 GKTATRGDRSRFMAYLG----HLP----------------------------------GL 93
Query: 248 KPDL-FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTT 306
K DL ++ G+ A + L ++GL DTL VR +S GQKKRL
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLAL 148
Query: 307 GEMMVGPALALFMDEISNGLD 327
+ + PA +DE LD
Sbjct: 149 ARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1020
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +TV H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 1021 PSIDIFEAFDELFLMKRG 1038
+ E DE+ +M +G
Sbjct: 236 ME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 58/250 (23%), Positives = 96/250 (38%), Gaps = 66/250 (26%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
L ++ I G L+GP +GK+TLL + + L SG + NG D+++ R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 200 AAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
Y+ + IG + V E +AF+ GV R E+ +R A
Sbjct: 73 IPYLRR---KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA---- 120
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
L+++GL + +SGG+++R+
Sbjct: 121 -------------------------LELVGLSHKHRA-----LPAELSGGEQQRVAIARA 150
Query: 310 MVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD--- 366
+V L DE + LD TT+ I+N L + I+ T V+ A +L D
Sbjct: 151 IVNSPTILIADEPTGNLDPDTTWEIMN-LLKKINKAGTTVVV-----ATHAKELVDTTRH 204
Query: 367 -IILLSDGQI 375
+I L G++
Sbjct: 205 RVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 68/301 (22%), Positives = 112/301 (37%), Gaps = 98/301 (32%)
Query: 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLL--LALAGQLDSSLKVSGRVTYNGHD 190
KH LKD++ I ++T L+GP GK+TLL L L +V G V +G +
Sbjct: 18 GDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKN 75
Query: 191 MNEFVPQRTAAYISQHDV-----HIG---------EMTVRETLAFSARCQGVGSRYDMLT 236
+ + + DV +G M++ + +A+ R G+ + L
Sbjct: 76 IYD----------PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI--KDKELD 123
Query: 237 ELARR-EKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295
E+ K+A + D D L + G
Sbjct: 124 EIVESSLKKAAL--------------------------------WDEVKDRL--HKSALG 149
Query: 296 ISGGQKKRLTTGEMMVGPALA-----LFMDEISNGLDSSTTFHI---VNSLRQNIHILNG 347
+SGGQ++RL + ALA L MDE ++ LD +T I + L++
Sbjct: 150 LSGGQQQRLC-----IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKY----- 199
Query: 348 TAVI---SLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADF 404
T VI ++ Q A + D G++V GP + F + P+ K D+
Sbjct: 200 TIVIVTHNMQQAARVS----DYTAFFYLGELVEFGPTD---KIFTN-----PKHKRTEDY 247
Query: 405 L 405
+
Sbjct: 248 I 248
|
Length = 253 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 57/251 (22%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
IL+ VS + G +T +LG GKTTLL L G L SG + +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 198 RTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
A AY+ Q +TV E L G L L RR ++ I +++
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLL-------TG-----LAALPRRSRK--IPDEIY- 115
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG- 312
++F VL + L G GD +SGGQ+++L +V
Sbjct: 116 ELF-----------PVLKE-MLGRRG---------GD-----LSGGQQQQLAIARALVTR 149
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILN---GTAVISLLQPAPETYDLFDDIIL 369
P L L +DE + G+ S I+ + + I L G A++ + Q +L D +
Sbjct: 150 PKL-LLLDEPTEGIQPS----IIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV 204
Query: 370 LSDGQIVYQGP 380
+ G++V G
Sbjct: 205 MERGRVVASGA 215
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 42/205 (20%), Positives = 72/205 (35%), Gaps = 51/205 (24%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-- 196
+L +V+ I G + L+GP GK+TLL + G L +G + N ++ +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
QR + Q + ++V + L F+ + L
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA------------------------LPATL----- 106
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
+G + L+ GLD +SGGQ+ R+ ++ A
Sbjct: 107 ------KGNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKA 155
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQN 341
L +DE + LD +LR
Sbjct: 156 LLLDEPFSRLDV--------ALRDQ 172
|
Length = 213 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-08
Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 34/236 (14%)
Query: 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870
FDDV++S D +GV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVE--------DVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 871 RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR--LR--- 925
++ SG I I G T I + + V ++ L++ + +R
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 926 -TEVDSETRKMF-IEEIMELVELKPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSI 982
D E R + + +E KP ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ-LSGGERQRLAIARALLKDPPI 492
Query: 983 IFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ +DE TS LD A V + + + GRT H+ S + A D + + G
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDNG 545
|
Length = 588 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 71/257 (27%), Positives = 108/257 (42%), Gaps = 48/257 (18%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + G V + G D+ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 198 RTAAYISQHDVHIGEMTVRETLAFS--ARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
A GE +AF GV +++ + T L G +P +D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDR 117
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV-GPA 314
F E K+ L + D L V G SGG+KKR +M V P
Sbjct: 118 FDFQDLMEE-----------KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 315 LALFMDEISNGLDS---STTFHIVNSLRQN----IHILNGTAVISLLQPAPETYDLFDDI 367
L + +DE +GLD VNSLR I + + ++ ++P D +
Sbjct: 166 LCI-LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKP--------DYV 216
Query: 368 ILLSDGQIVYQGPCELV 384
+L G+IV G LV
Sbjct: 217 HVLYQGRIVKSGDFTLV 233
|
Length = 248 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 51/228 (22%), Positives = 78/228 (34%), Gaps = 50/228 (21%)
Query: 126 SIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185
+ L + + + +S + G + GP GKTTLL LAG L SG V
Sbjct: 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVR 58
Query: 186 YNGHDMNE--FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREK 243
+NG + E P R Y+ E++ E L F A G G++ + LA
Sbjct: 59 WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA--- 114
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
+GL D +S GQ++R
Sbjct: 115 ----------------------------------VGLTGFEDLPAAQ-----LSAGQQRR 135
Query: 304 LTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI 351
L + + A +DE + LD + + LR H+ G V+
Sbjct: 136 LALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 64/270 (23%), Positives = 102/270 (37%), Gaps = 54/270 (20%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
L VS IK G LLGP GKTTLL +AG + SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
+R + Q+ +TV E +AF R + + E+ R EA
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
L ++ L+ A + +SGGQ++R+ +V
Sbjct: 115 ------------------LDLVQLEGYA-----NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376
L +DE LD + L+ + G + + E + D I +++ G+I
Sbjct: 152 LLLDEPLGALDLKLRKDMQLELK-RLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
Query: 377 YQG-PCELVLDFFESMGFKCPERKSVADFL 405
G P E+ ++ P + VADF+
Sbjct: 211 QIGTPEEI---------YEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYISGNITISGYPKKQET 892
L+ ++ + + G + AL+G SG+GK+ ++ +L T SG I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 893 F-TRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
R QN + PL T+ + + LR ++ + R + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARAL-ILEALEAVGLPDP 115
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009
+ L P + LS +R+ IA+ L+ P + DEPT+ LD A V++ ++ +
Sbjct: 116 EEVLKKYPFQ--LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1010 T-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
G ++ H + + DE+ +M G
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 44/233 (18%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGNITISG-----YPKK 889
+N S G + +MG+SG+GK+TL+ R I G I + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 890 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK 947
+ E + Q+ P TV E++ + L ++ V R+ E +ELV L+
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLE 155
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRT 1003
P E LS ++R+ +A L +P I+ MDE S LD ++
Sbjct: 156 GYADKY---PNE--LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210
Query: 1004 VKNTVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1046
+ +T+V H D+ EA D + +MK G +EI + P
Sbjct: 211 QA---KLKKTIVFITH----DLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG--YPKKQETFTR 895
L V+ PG + AL+G +GAGK+TLM VL+G G ITI+ Y K
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 896 ISG----YCEQNDIHSPLVTVYESLLYSAWLRLRTE-------VDSETRKMFIEEIMELV 944
G Y E + I +TV E+L R T+ +D ++ ++ V
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
LK V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 134 GLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 53/162 (32%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
++GVS + + G L+G SG GK+TL ++ G T SG I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT----SGEILFEG---------- 74
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP---LRQS 952
DI T++ E R+ + E++E V L R
Sbjct: 75 -------KDI--------------------TKLSKEERRERVLELLEKVGLPEEFLYRY- 106
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
P E LS QR+R+ IA L NP +I DEP S LD
Sbjct: 107 ----PHE--LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 26/184 (14%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR--ISGYCEQNDI 905
G + A+MG SGAGK+TL++++AG SG+I ++ + +S ++N++
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNL 81
Query: 906 HSPLVTVYES--LLYSAWLRLRTE----VDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959
+ L TV ++ L L+L E V +++ I + ++ LP +
Sbjct: 82 FAHL-TVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR------------LPEQ 128
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTI 1018
LS QR+R+ +A LV I+ +DEP S LD ++ VK E RT++
Sbjct: 129 --LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186
Query: 1019 HQPS 1022
H S
Sbjct: 187 HHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 46/204 (22%), Positives = 70/204 (34%), Gaps = 47/204 (23%)
Query: 126 SIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185
L+ ++ T+ D+S + G + GP +GKTTLL LAG L +G V
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVY 60
Query: 186 YNGHDMNEF--VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREK 243
+ G + + Y+ E+T E L F R G G+ + E
Sbjct: 61 WQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWE------ 113
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
A A G L + D V +S GQ++R
Sbjct: 114 ---------------ALAQVG-----LAG---------------LEDLPVGQLSAGQQRR 138
Query: 304 LTTGEMMVGPALALFMDEISNGLD 327
+ + + PA +DE LD
Sbjct: 139 VALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-08
Identities = 61/250 (24%), Positives = 100/250 (40%), Gaps = 55/250 (22%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
LK+ + + G +LG SGK+TLL LAG D G +T NG ++ Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 198 ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
T + ++Q VH+ T+R+ L + PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDA-SD 441
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
+ AA + L + +T +G E R +SGG+++RL ++ A
Sbjct: 442 EELWAAL----QQVGLEKL---LESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL-----FDDIIL 369
+DE + GLD T ++ L + H T ++ T+ L D II+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIV 544
Query: 370 LSDGQIVYQG 379
L +G+I+ +G
Sbjct: 545 LDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 23/191 (12%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+L++VS + PG L+G +GK+TLL LAG+L+ SG VT V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
Y+SQ E TV + + +G G ++L EL D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 258 KA-AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
+G + L LG D V +SGG ++R+ ++
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDL 174
Query: 317 LFMDEISNGLD 327
L +DE +N LD
Sbjct: 175 LLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 30/199 (15%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIS---GNITISGYPKKQET 892
LNG+S G ++G +GAGK+TL++ +AG T G I ++T K+
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 893 FTRI-----SGYCEQNDIHSPLVTVYESLLYSAWLR-----LRTEVDSETRKMFIEEIME 942
R+ +G P +T+ E+L A R L + ++ R F E +
Sbjct: 82 LARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 943 LVE-LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
L L+ +GL LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 134 LGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
Query: 1002 R-TVKNTVETGRTVVCTIH 1019
T K E T + H
Sbjct: 189 ELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 63/232 (27%)
Query: 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869
L+ ++V++S +++ VL +S + G AL+G SG+GK+TL+ +L
Sbjct: 1 LSINNVSFSYP----------EQEQQVL-KNLSLELKQGEKIALLGRSGSGKSTLLQLLT 49
Query: 870 GRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVY--ESLLYSAWLRLRTE 927
G G IT+ G P +S + S L++V L+ LR
Sbjct: 50 GDLKPQ--QGEITLDGVP--------VSDLEKA---LSSLISVLNQRPYLFDTTLR---- 92
Query: 928 VDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987
+ +G S +R+RL +A L+ + I+ +DE
Sbjct: 93 ------------------------NNLGRR----FSGGERQRLALARILLQDAPIVLLDE 124
Query: 988 PTSGLDARAAAIVMRTVKNTVETGRTVV-CTIHQPSIDIFEAFDELFLMKRG 1038
PT GLD ++ + ++ +T++ T H I E D++ ++ G
Sbjct: 125 PTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 36/175 (20%)
Query: 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS-- 897
VS PG + ++G SG+GKTTL++ L+ R +G + + +S
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALSEA 81
Query: 898 ----------GYCEQN--DIHSPLVT----VYESLLYSAWL---RLRTEVDSETRKMFIE 938
G+ Q+ D V+ + E L+ +R
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATA---------G 132
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
+ +E VE+ R + LP + S ++RL IA LV +P ++FMDEPT GLD
Sbjct: 133 DWLERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-08
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG--QLDSSLKVSGRVTYNGHDMNEFV 195
++ ++ I G LLGP GKTT+L +AG D SGR+ +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVP 82
Query: 196 P-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEA 245
R + Q MTV E +AF R Q + E+ R EA
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA 128
|
Length = 375 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 63/254 (24%), Positives = 107/254 (42%), Gaps = 51/254 (20%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKV--SGRVTYNGHDMNEFVP 196
IL ++S IKPG + ++G SGK+TL +L V +GRV +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 197 ---QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
+R + Q +V ++R+ +A + ++
Sbjct: 72 AWLRRQVGVVLQENVLFNR-SIRDNIALAD------------PGMSMERVI--------- 109
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGP 313
EA L + + L DT+VG++ G+SGGQ++R+ ++
Sbjct: 110 ------------EAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHN 156
Query: 314 ALALFMDEISNGLDSSTTFHIVNSLRQNIH-ILNGTAVISLLQPAPETYDLFDDIILLSD 372
L DE ++ LD + I+ +N+H I G VI ++ T D II++
Sbjct: 157 PRILIFDEATSALDYESEHAIM----RNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEK 211
Query: 373 GQIVYQGPCELVLD 386
G+IV QG + +L
Sbjct: 212 GRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-08
Identities = 67/262 (25%), Positives = 100/262 (38%), Gaps = 82/262 (31%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF---- 194
+LK +S IK G LLG GK+TLL L D G + NG + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAA 411
Query: 195 -------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
V QR VH+ T+R+ L LA
Sbjct: 412 LRQAISVVSQR---------VHLFSATLRDNLL-----------------LA-------- 437
Query: 248 KPDLFIDVFMKAAATEGQEANVLTDYYLKVL-----GLDVCADTLVGDEMVRGISGGQKK 302
A++ VL L+ L GL + +G E R +SGG+++
Sbjct: 438 ----------APNASDEALIEVLQQVGLEKLLEDDKGL----NAWLG-EGGRQLSGGEQR 482
Query: 303 RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD 362
RL ++ A L +DE + GLD+ T I+ L + H N T ++ T+
Sbjct: 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI-------THR 533
Query: 363 L-----FDDIILLSDGQIVYQG 379
L FD I ++ +GQI+ QG
Sbjct: 534 LTGLEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-08
Identities = 68/271 (25%), Positives = 100/271 (36%), Gaps = 80/271 (29%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN----EFV 195
+ DVS ++ G L+G SGK+TL LAG L S SG + ++G D++ E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 196 PQR-TAAYISQH-----DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
R + Q + MTV + LA R G GS A R
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSG-------AERRA------ 407
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
L+++GL D +SGGQ++R
Sbjct: 408 --------------------RVAELLELVGL----PPEFLDRYPHELSGGQRQR------ 437
Query: 310 MVGPALAL-------FMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV-IS-----LLQP 356
V A AL +DE + LD S ++N L+ L T + IS +
Sbjct: 438 -VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI 496
Query: 357 APETYDLFDDIILLSDGQIVYQGPCELVLDF 387
A D + ++ DG+IV +GP E V +
Sbjct: 497 A-------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 7e-08
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 36/197 (18%)
Query: 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGNITISGYPKKQETFTRISGYCEQN 903
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 904 DIHS-----PLVTVYESLLYS-----AWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
H P ++V +++ WLR R V + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLR-RPCVADFAA---VRDALRRVGLTELADRP 110
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1014 VVCTIHQPSIDIFEAFD 1030
++ T H D+ +A
Sbjct: 166 ILMTTH----DLAQAMA 178
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 39/221 (17%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGNITISGYPKKQET 892
V +N VS R G + +MG+SG+GK+TL+ R I SG + I G +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 893 FTRIS-------GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
+ Q+ P TV E++ + L ++ V R+ E +ELV
Sbjct: 93 RKELRELRRKKISMVFQSFALLPHRTVLENVAFG--LEVQG-VPRAEREERAAEALELVG 149
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
L+ P E LS ++R+ +A L +P I+ MDE S LD ++ R ++
Sbjct: 150 LEGWEHKY---PDE--LSGGMQQRVGLARALAVDPDILLMDEAFSALD----PLIRREMQ 200
Query: 1006 NTV-----ETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
+ + E +T+V H D+ EA D + +MK G
Sbjct: 201 DELLRLQAELQKTIVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-08
Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 42/241 (17%)
Query: 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869
+ F DV++S P D VL G++ PG + AL+G SG+GK+T+ +L
Sbjct: 479 IEFQDVSFS--YPN-------RPDVPVL-KGLTFTLHPGEVVALVGPSGSGKSTVAALLQ 528
Query: 870 G--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV-YESLLYSAWLRLRT 926
+ TGG + + G P Q + + +H + V E +L+S +R
Sbjct: 529 NLYQPTGG----QVLLDGVPLVQ---------YDHHYLHRQVALVGQEPVLFSG--SVRE 573
Query: 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELV 977
+ EEIM + ++ P GE G LS Q++R+ IA LV
Sbjct: 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633
Query: 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037
P ++ +DE TS LDA ++ + RTV+ H+ S E D++ ++K+
Sbjct: 634 RKPRVLILDEATSALDAECEQLLQESRS---RASRTVLLIAHRLS--TVERADQILVLKK 688
Query: 1038 G 1038
G
Sbjct: 689 G 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 9e-08
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 14/175 (8%)
Query: 853 LMGVSGAGKTTLMDVL----AGRKTGGYISGN-ITISGYPKKQE--TFTRISGYCEQNDI 905
L+G SGAGK++L+ VL R I+GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965
P +TV E+L+ A R+ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLI-EAPCRVLGLSKDQAL----ARAEKLLKRLRLKPYADRYPLH--LSGG 145
Query: 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1020
Q++R+ IA L+ P ++ DEPT+ LD A ++ +K ETG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 60/248 (24%), Positives = 102/248 (41%), Gaps = 51/248 (20%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL------DSSLKVSGRVTYNGHDMN 192
L D+S I G T L+G SGK+T+ + G L +S + V G +T +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLTAKTVW 80
Query: 193 EFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+ + ++ D TV + +AF + V R +M+ I D+
Sbjct: 81 D-IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK----------IVRDVL 128
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT-TGEMMV 311
DV M DY D +SGGQK+R+ G + V
Sbjct: 129 ADVGM-------------LDYI---------------DSEPANLSGGQKQRVAIAGILAV 160
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371
P + + +DE ++ LD + I+ +R+ + N VIS+ E ++ D +++L
Sbjct: 161 EPKI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLD 217
Query: 372 DGQIVYQG 379
DG+++ QG
Sbjct: 218 DGKLLAQG 225
|
Length = 282 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 9e-08
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 20/193 (10%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890
+ D+ LL +S G L L G +GAGKTTL+ ++AG G I K+
Sbjct: 11 YHDQP-LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKK 67
Query: 891 ETFTRISGYC---EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK 947
+ T C ++ I +P +T+ E+ LY ++ + I E+ L L+
Sbjct: 68 DLCTYQKQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLE 118
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
L GL LS+ Q++++ + ++ + +DEP LD + ++ ++
Sbjct: 119 HLIDYPCGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH 173
Query: 1008 VETGRTVVCTIHQ 1020
G V+ T HQ
Sbjct: 174 RAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-07
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 54/220 (24%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT 894
L ++ G L A++G G+GK++L+ L G K SG++++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVSVPG--------- 66
Query: 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD-----SETRKMFIEEIMELVELKP- 948
I+ Y Q W++ T + + E++++ L+P
Sbjct: 67 SIA-YVSQ----------------EPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD 109
Query: 949 LRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAA 998
L LP GE G LS Q++R+++A + ++ I +D+P S +DA
Sbjct: 110 LEI----LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRH 165
Query: 999 IVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
I + + +T + HQ + + D++ ++ G
Sbjct: 166 IFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 49/248 (19%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
LK V+ + PG + LLG +GK+TL+ L+G + + G +T N + N+ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 200 A----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID- 254
A I Q I E+TV E L + R LT +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGVN---IIDW 119
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
M+ A L +GL V D V + +S K+ L + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 315 LALFMDEISNGLDSSTT---FHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371
+ MDE ++ L + F I+N LR+ GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 372 DGQIVYQG 379
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ----ETF 893
L+G++ RPG AL+G SGAGK+TL +L + SG I + G +Q E
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
R++ + + + +V E++ Y EV++ R E + L +
Sbjct: 414 ARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYDTY 469
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
+G G + LS QR+R+ IA ++ + I+ +DE TS LDA + +V + ++ T+ GRT
Sbjct: 470 LGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE-TLMKGRT 527
Query: 1014 VVCTIHQ 1020
+ H+
Sbjct: 528 TLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 57/257 (22%), Positives = 89/257 (34%), Gaps = 67/257 (26%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE------ 193
+ V+ ++ G + LGP +GKTT + L L + SG G+D+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 194 ----FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
VPQ + ++T RE L R G L + E E +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG----------LPKDEAEERAEE 107
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
L++ L D V SGG ++RL
Sbjct: 108 ------------------------LLELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 310 MVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILN--GTAVISLLQPAPETYDLFDDI 367
++ LF+DE + GLD T ++ I L G ++ E L D I
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTR----RAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194
Query: 368 ILLSDGQIVYQG-PCEL 383
++ G+I+ +G P EL
Sbjct: 195 AIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 830 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ISGNITI 883
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG ++G++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 884 SGYP 887
+G P
Sbjct: 69 NGEP 72
|
Length = 272 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 117 TNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS 176
NIIE S + + L+ILK V ++K G ++GP SGK+TLL LAG D
Sbjct: 4 ENIIEVHHLSKT-VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP 62
Query: 177 SLKVSGRVTYNGHDMNEF-------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 229
S SG V G +++ + R ++ Q I +T E +A +G
Sbjct: 63 S---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES 119
Query: 230 SRYDMLTELARREKEA 245
S A+ EA
Sbjct: 120 SADSRAG--AKALLEA 133
|
Length = 228 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 62/265 (23%), Positives = 104/265 (39%), Gaps = 65/265 (24%)
Query: 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD--------MN 192
+DVS + PG + ++G SGK+TLL LAG+L G TY ++
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 193 EFVPQRTA----AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIK 248
E +R ++ Q+ M V R +G+R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 249 PDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE 308
+ AT D+ +V ++ + D++ R SGG ++RL
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 309 MMV-GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD----- 362
+V P L +FMDE + GLD S +++ LR + L +I T+D
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVAR 213
Query: 363 -LFDDIILLSDGQIVYQGPCELVLD 386
L ++++ G++V G + VLD
Sbjct: 214 LLAQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 68/296 (22%), Positives = 114/296 (38%), Gaps = 99/296 (33%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
LK+++ I ++T L+GP GK+TLL +L L +++ G+V ++G D+
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI------ 70
Query: 198 RTAAYISQHDV-----HIG---------EMTVRETLAFSARCQGVGSRYDMLTELARREK 243
Y + DV +G M++ + +A+ R G+ + EL +
Sbjct: 71 ----YDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDK----KELDEIVE 122
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
E+ K L+ +V + L D L G+SGGQ++R
Sbjct: 123 ESLKKAALWDEVKDR-----------LHDSAL-------------------GLSGGQQQR 152
Query: 304 LTTGEMMVGPALA-----LFMDEISNGLDSSTTFHI---VNSLRQNI------HILNGTA 349
L + ALA L +DE ++ LD T I + L++ H + A
Sbjct: 153 LC-----IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAA 207
Query: 350 VISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405
IS D DG++V GP E + F P+ K D++
Sbjct: 208 RIS------------DRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 63/242 (26%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ R+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 897 SG--YCEQNDIHS--------------------PLVTVYESLLYSAWLRLRTEVDSETRK 934
SG Y + DI P ++++E++ L+L V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 935 MF--IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
+ + +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 993 D----ARAAAIVMRTVKNTVETGRTVVCTIHQPS----IDIFEAFDELFLMKRGGQEIYV 1044
D A+ ++ + K+ T+V H P I + AF L+ GQ +
Sbjct: 178 DPENTAKIESLFLELKKDM-----TIVLVTHFPQQAARISDYVAF--LY----KGQIVEW 226
Query: 1045 GP 1046
GP
Sbjct: 227 GP 228
|
Length = 250 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 24/244 (9%)
Query: 808 YSLTFDDVTYSADMPKEMKLKGV---HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 864
+ T + + + + L+ + D LL+ ++ RPG + G SGAGKT+L
Sbjct: 376 PARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSL 435
Query: 865 MDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924
+ LAG + G+ I P + Q + P T+ E+L Y
Sbjct: 436 LRALAGL----WPWGSGRI-SMPADSALL-----FLPQRP-YLPQGTLREALCYP---NA 481
Query: 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGL-PGESGLSTEQRKRLTIAVELVANPSII 983
+ + ++ V L L + L + LS +++RL A L+ P +
Sbjct: 482 APDFSDAE----LVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV 537
Query: 984 FMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043
F+DE TS LD + + +K + TV+ H+P++ F + +L L+ G +
Sbjct: 538 FLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHS-RQLELLDDAGGQNL 595
Query: 1044 VGPL 1047
P
Sbjct: 596 KPPA 599
|
Length = 604 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 25/223 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNI-------TISGYPK 888
++ VS + G + ++G SGAGKTTL ++AG T G ++ + T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP 948
+ R G Q P TV ++L + L L E+ K I M + +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008
+ L P E LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYPDE--LSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1009 -----ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046
E +T + H + + D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 31/199 (15%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISG---YP 887
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 888 KKQET--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
K + + G Q P +++E++ Y LR+ D+ + +EE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 946 L-----KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
L L++S L G Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 132 LWDEVKDKLKESAFALSGG------QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
Query: 1001 MRTVKNTVETGRTVVCTIH 1019
+ + ++ T+V H
Sbjct: 186 EELI-HELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD---M 191
T+L DVS I+ G + LLGP SGK+TLL +AG L+ SG + +G D +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDL 67
Query: 192 NEFVPQ--RTAAYISQHDVHIGEMTVRETLAF 221
+ +P R + Q +TV E +A
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
+ +L+D++ ++ G +LGP GK+TLL +AG + SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 231
Y+ Q D + +TV + +A +G
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA 105
|
Length = 248 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 56/215 (26%), Positives = 86/215 (40%), Gaps = 42/215 (19%)
Query: 832 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG------ 885
EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 12 EDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL 70
Query: 886 ---------------YPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDS 930
YP I G Q + + L V R + +D
Sbjct: 71 SPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLDR 117
Query: 931 ETRKMFIEEIMELVELKP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988
+ +EE + L+++ L +S+ G S ++KR I V P + +DE
Sbjct: 118 FDFQDLMEEKIALLKMPEDLLTRSV-----NVGFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
SGLD A IV V + + R+ + H I
Sbjct: 173 DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 58/234 (24%)
Query: 815 VTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 874
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 875 GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESL--------LYSAWLRLRT 926
G I I G + PL + SL L+S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986
+ E EEI + + G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSD---EEIYGALRVSE---------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH--QPSIDIFEAFDELFLMKRG 1038
E T+ +D A++ +T++ T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 55/232 (23%)
Query: 826 KLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNIT 882
++K +H K +L GV+ + G + ALMG +G+GK+TL + G G I
Sbjct: 2 EIKDLHVSVGGKEIL-KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60
Query: 883 ISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFI----- 937
G DI + E R R +F+
Sbjct: 61 FKG-----------------EDITD--LPPEE--------RAR-------LGIFLAFQYP 86
Query: 938 EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
EI + LR G G G ++KR I L+ P + +DEP SGLD A
Sbjct: 87 PEIPGVKNADFLRYVNEGFSG--G----EKKRNEILQLLLLEPDLAILDEPDSGLDIDAL 140
Query: 998 AIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM------KRGGQEIY 1043
+V + E G++V+ H + + D + ++ K G +E+
Sbjct: 141 RLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 12/194 (6%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYISGNITISGYP 887
H +L+ + G + ++G SG+GK+TL+ + L +G I + ++ P
Sbjct: 10 HFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-P 68
Query: 888 KKQETFTRI-SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
K E R +G Q P +T E++++ LR+R E K EL+
Sbjct: 69 KVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQ----ARELLAK 123
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
L + P E LS Q++R+ IA L P ++ DEPTS LD V++ +++
Sbjct: 124 VGLAERAHHYPSE--LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181
Query: 1007 TVETGRTVVCTIHQ 1020
E G T+V H+
Sbjct: 182 LAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNIT-ISGYPKK 889
L ++ + +TAL+G SG GK+TL+ D++ G + G I N I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL--- 946
R G Q P ++YE++ Y R+ E + +T +E+ ++ L
Sbjct: 82 VVALRRKIGMVFQRPNPFP-KSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALWDE 138
Query: 947 --KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
L S + L G Q++RL IA L NP +I MDEP S LD A A
Sbjct: 139 VKDRLHDSALSLSG------GQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 850 LTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISG---YPKKQETFTRIS-G 898
+TAL+G SG GK+TL+ D++ G K I+G +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 899 YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG 958
Q P+ ++YE++ Y LR + D + +E + L + +
Sbjct: 87 MVFQKPNPFPM-SIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA 143
Query: 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 144 -FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 821 MPKEMKLKGVH--EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TG 874
M K + +K ++ + V+ P +TA +G SG GK+T++ L R G
Sbjct: 1 MAKRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPG 59
Query: 875 GYISGNITISG---YPKKQETFT--RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD 929
+ G + + G Y + R G Q P +++ ++++ A L+L +
Sbjct: 60 ARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRN 117
Query: 930 SETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 989
+ +E+ + L + + PG GLS Q++RL IA + P ++ MDEP
Sbjct: 118 KKDLDELVEKSLRGANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPC 176
Query: 990 SGLD 993
S LD
Sbjct: 177 SALD 180
|
Length = 258 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 57/256 (22%), Positives = 97/256 (37%), Gaps = 67/256 (26%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+ ++S + PG + LLGP +GKTT + G L+ + G +T+NG +++ +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
R Y+ + +MTV + L + A +G+ + E K
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM------------PKAEIQKK--------- 110
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS----GGQKKRLTTGEMMVGP 313
+L+ L + + + I G Q+K ++ P
Sbjct: 111 -------------LQAWLERLE--------IVGKKTKKIKELSKGNQQKIQFISAVIHEP 149
Query: 314 ALALFMDEISNGLDSSTTFHIVNS--LRQNIHILN--GTAVI---SLLQPAPETYDLFDD 366
L L +DE +GLD VN L+ I L G +I ++ E L D
Sbjct: 150 EL-LILDEPFSGLDP------VNVELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDR 199
Query: 367 IILLSDGQIVYQGPCE 382
+++L GQ V G E
Sbjct: 200 LLMLKKGQTVLYGTVE 215
|
Length = 300 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 52/256 (20%)
Query: 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF 194
HL + D++ + G + +LGP +GK+TLL +AG SG + NG D
Sbjct: 12 GHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTAS 66
Query: 195 VP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
P +R + + Q + +TV + + G+ P L +
Sbjct: 67 PPAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPGLKL 102
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGP 313
+ E +E + +GL L G+ +SGGQ++R+ +V
Sbjct: 103 N-------AEQREK---VEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVRE 147
Query: 314 ALALFMDEISNGLDSS---TTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370
L +DE + LD + +V+ L + T ++ P + + D ++ L
Sbjct: 148 QPILLLDEPFSALDPALRAEMLALVSQLCDERKM---TLLMVTHHPE-DAARIADRVVFL 203
Query: 371 SDGQIVYQGPCELVLD 386
+G+I QG + +L
Sbjct: 204 DNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYISGNITISG---YPKKQE 891
L G+ F +TAL+G SG GK+T + L G I+GN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 892 T--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
+ G Q P ++YE+++Y LRL D K ++E +E L
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKD----KAVLDEAVE----TSL 129
Query: 950 RQSLV-----GLPGESGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLD 993
+Q+ + ES LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 62/258 (24%), Positives = 93/258 (36%), Gaps = 58/258 (22%)
Query: 155 LLGPPSSGKTTLLLALAG--QLDSSLKVSGRVTYNGHDMNEFVPQ-RTAAYISQHDVHIG 211
LLGP GKTTLL LAG Q D SG + +G D+ P R + Q
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD-----SGSIMLDGEDVTNVPPHLRHINMVFQSYALFP 55
Query: 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLT 271
MTV E +AF + + V E+ R EA L
Sbjct: 56 HMTVEENVAFGLKMRKVPR-----AEIKPRVLEA-------------------LRLVQLE 91
Query: 272 DYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV-GPALALFMDEISNGLDSST 330
++ D +SGGQ++R+ +V P + L +DE + LD
Sbjct: 92 EF---------------ADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKL 135
Query: 331 TFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFES 390
+ L+ L G + + E + D I ++ G+I G E +
Sbjct: 136 RDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI------ 188
Query: 391 MGFKCPERKSVADFLQEV 408
++ P VA F+ E+
Sbjct: 189 --YEEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP---KKQETF 893
+LN +S + R G A+ G SG GK+TL+ ++A + SG + G K E +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAY 75
Query: 894 TRISGYCEQNDIHSPLV--TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
+ YC Q L TV ++L++ +R R + +L+ L
Sbjct: 76 RQQVSYCAQT---PALFGDTVEDNLIFPWQIR----NRRPDRAAAL----DLLARFALPD 124
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRTVKNT 1007
S++ LS +++R+ + L P I+ +DE TS LD ++ R V+
Sbjct: 125 SILTKNITE-LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR-- 181
Query: 1008 VETGRTVVCTIHQP 1021
E V+ H
Sbjct: 182 -EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 60/222 (27%), Positives = 86/222 (38%), Gaps = 56/222 (25%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
L DVS I+ G L GP +GKTTLL L G L S G+V G D+N R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 199 TAAYISQH------DVHI-GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
+ + D + + TV E +A +G R E+ RR A
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311
L+ +GL+ AD +SGG+++R+ +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 312 G-PALALFMDEISNGLDSSTTFHIVNSLRQ-NIHILNGTAVI 351
P L L DE + LD + I++ L++ N GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKRLNKR---GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L +S + +PG ++G +G+GK++L +LA + SG+I I G ++I
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGVD-----ISKIG 72
Query: 898 GYCEQNDIHSPLVTV-YESLLYSAWLRL----RTEVDSETRKMFIEEIMELVELKPLRQS 952
+D+ S + + + +L+S +R E E + + +E V LK +S
Sbjct: 73 ----LHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE----LWQALERVGLKEFVES 124
Query: 953 LVG------LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
L G G LS QR+ L +A L+ I+ +DE T+ +D A++ +T++
Sbjct: 125 LPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 184
Query: 1007 TVETGRTVVCTIH 1019
TV+ H
Sbjct: 185 AF-KDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 36/211 (17%)
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS 884
M+L V L +S R G + L+G +GAGK+TL+ +AG G SG+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 885 G-----YPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEE 939
G + R Y Q + V++ L L + +E + E
Sbjct: 56 GQPLEAWS--AAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNE 109
Query: 940 IMELVEL-----KPLRQSLVGLPGESGLSTEQRKRLTIAVEL----VANPS--IIFMDEP 988
+ E + L + + Q L G GE QR RL AV L NP+ ++ +DEP
Sbjct: 110 VAEALGLDDKLGRSVNQ-LSG--GEW-----QRVRLA-AVVLQVWPDINPAGQLLLLDEP 160
Query: 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
+ LD A + R + + G VV + H
Sbjct: 161 MNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-07
Identities = 71/234 (30%), Positives = 110/234 (47%), Gaps = 37/234 (15%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L+ V+ RP + ALMG +GAGK+TL+ L G +K SG+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 896 ISGYCEQNDI---HSPLVTVYE-SLLYSAWL-RLRTE---VD-----SETRKMFIEEIME 942
S +N I H L V + S++ + WL R T+ VD +T+ +F E
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF----DE 121
Query: 943 L-VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
L +++ P R + + LS Q + + IA N I+ MDEPTS L + +
Sbjct: 122 LDIDIDP-RAKV------ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 174
Query: 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLI 1055
++ E G +V H+ +IF+ DE+ ++ R GQ I PL + D I
Sbjct: 175 TIIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGLTMDKI 226
|
Length = 491 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-07
Identities = 47/207 (22%), Positives = 76/207 (36%), Gaps = 48/207 (23%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG----HDMNEF 194
+LK ++ + G + LLG +GK+TLLL L G L SG V +G +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 195 VPQRT-AAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+ +R + Q D + V + +AF G+ E+ RR +EA
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
L +G + +SGG+KKR+ +
Sbjct: 112 ----------------------LTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAM 144
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLR 339
L +DE + GLD + ++ LR
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILR 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-07
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 13/205 (6%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L+ +S PG AL+G SG+GK+TL++++ + SG I + G+ T +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 898 GYCEQ--NDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEE-IMELVELKPLR-QSL 953
D+ T+ ++ Y R +E + + V+ PL +
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYG---RTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
+G G LS QR+RL IA L+ + I+ +DE TS LD + +V ++ ++ GRT
Sbjct: 463 IGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRT 520
Query: 1014 VVCTIHQPSIDIFEAFDELFLMKRG 1038
+ H+ S E D + +M G
Sbjct: 521 TLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 8e-07
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 21/228 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETF--TR 895
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 896 ISGYCEQNDIHSPL-----VTVYESLLYSAWLRL---RTEVDSETRKMFIEEIMELVELK 947
+G IH L ++V E++ + L R ++ + + ++ ++L
Sbjct: 77 RAGIV---IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA--KNLLRELQLD 131
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
+ G+ G +Q + IA L ++ +DEP+S L + I++ +++
Sbjct: 132 ADNVTRP--VGDYGGGQQQ--LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 1008 VETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLI 1055
G V C ++ +A + + R GQ + + + S D I
Sbjct: 188 KAHG--VACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDI 233
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 9e-07
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 48/222 (21%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDI-- 905
G + L+G SG GKTT++ ++AG + G I I G E T S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 906 --HS----PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959
S P +++ E++ Y L++ V E RK ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-----ETGRTV 1014
+S Q++R+ +A L+ P ++ DEP S LDA + R+++ + + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1015 VCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1046
+ H S EAF D + +M +G QE+Y P
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISG 898
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 899 -YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
+ + N +P + + + LRL T+++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 27/177 (15%)
Query: 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQ- 890
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 891 ------ETFTRISGYCEQNDIHSPLV--------TVYESLLYSAWLRLRTEVDSETRKMF 936
TF + + E I + LV ++ LL + R R E ++ R
Sbjct: 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFR-RAESEALDRAAT 136
Query: 937 IEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
E + L+E RQ+ L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 137 WLERVGLLEHAN-RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 70/314 (22%), Positives = 116/314 (36%), Gaps = 75/314 (23%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
++ + + + DV+ I+ G +L+GP SGKTT L + ++ + SG + +G
Sbjct: 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGE 63
Query: 190 DMNEFVP---QRTAAYISQHDVHIG---EMTVRETLAFSARCQGVGSRYDMLTELARREK 243
D+++ P +R Y+ Q IG +TV E +A + G R +K
Sbjct: 64 DISDLDPVELRRKIGYVIQ---QIGLFPHLTVAENIATVPKLLGWDK--------ERIKK 112
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
A D L ++GLD + D +SGGQ++R
Sbjct: 113 RA--------------------------DELLDLVGLDP---SEYADRYPHELSGGQQQR 143
Query: 304 LTTGEMMVGPALAL-------FMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356
VG A AL MDE LD T + ++ + G ++ +
Sbjct: 144 -------VGVARALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHD 195
Query: 357 APETYDLFDDIILLSDGQIVYQGPCELVL-----DFFESM------GFKCPERKSVADFL 405
E L D I ++ G+IV + +L DF E G + SVAD +
Sbjct: 196 IDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAV 255
Query: 406 QEVTSRKDQRQYWV 419
+ +
Sbjct: 256 RRGEPADGEPLLEG 269
|
Length = 309 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 71/279 (25%), Positives = 107/279 (38%), Gaps = 62/279 (22%)
Query: 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV 195
T LKD+S +K G LLGP GKTTLL +AG L+ + +G + G D+
Sbjct: 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGTIYQGGRDITRLP 72
Query: 196 PQ-RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
PQ R + Q +TV + +A+ + +G+G
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA----------------------- 109
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE-MMVGP 313
E L ++GL G +SGGQ++R+ + P
Sbjct: 110 -----------EVAERVAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSP 153
Query: 314 ALALFMDEISNGLDSSTTFHIVNSLRQNIHILN---GTAVISLLQPAPETYDLFDDIILL 370
L L +DE + LD+ H LR I L G I + E + D I+++
Sbjct: 154 GL-LLLDEPLSALDARVREH----LRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVM 208
Query: 371 SDGQIVYQG-PCELVLDFFESMGFKCPERKSVADFLQEV 408
+ G I G P E+ ++ P VADF+ EV
Sbjct: 209 NHGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKV-SGRVTYNGHDMNE 193
ILK V+ IK G + L+GP SGK+TL + G +V G + + G D+ +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITD 68
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 850 LTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISGY----PKKQETFTRIS- 897
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
G Q P+ ++Y+++ + R+ +EE ++ L +S + P
Sbjct: 87 GMVFQKPTPFPM-SIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP 143
Query: 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
G LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 144 GTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 64/274 (23%), Positives = 104/274 (37%), Gaps = 65/274 (23%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187
H K++ + ++D+S I G + LG +GK+T L L G L L SG+V N
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVN 84
Query: 188 GHDMNEFVPQRTAAYISQHDVHIG-EMTVRETLAFSARCQGVGSRYDMLTELARREKEAG 246
G D P R ++ IG M + L + ++L +
Sbjct: 85 GKD-----PFRRR---EEYLRSIGLVMGQKLQLWW---DLPALDSLEVLKLIYE------ 127
Query: 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTT 306
I D F A L D+ ++L L + + + R +S GQ+ R
Sbjct: 128 IPDDEF--------------AERL-DFLTEILDL----EGFLKWPV-RKLSLGQRMRAEL 167
Query: 307 GEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQ-----------NIHILNGTAVISLLQ 355
++ P LF+DE + GLD + +I L++ HI + A
Sbjct: 168 AAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIA------ 221
Query: 356 PAPETYDLFDDIILLSDGQIVYQGPC-ELVLDFF 388
L D ++L+ GQ+V+ G +L F
Sbjct: 222 ------TLCDRVLLIDQGQLVFDGTLAQLQEQFG 249
|
Length = 325 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 13/173 (7%)
Query: 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIH 906
G + G +GAGKTTL+ VLAG SG I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 907 SPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966
++ E+L + L R ++M + +V L +LV LS Q
Sbjct: 94 KADLSTLENLHFLCGLHGR-----RAKQM-PGSALAIVGLAGYEDTLV-----RQLSAGQ 142
Query: 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 52/248 (20%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE-FVP 196
T++ +++ IK G M LLGP GKTT+L +AG L+ G++ +G D+ +
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGEDVTHRSIQ 76
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
QR + Q M++ E + + + GV E +R KEA DL
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEALELVDL----- 126
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV-GPAL 315
G E D V ISGGQ++R+ ++ P +
Sbjct: 127 ------AGFE-----------------------DRYVDQISGGQQQRVALARALILKPKV 157
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLL---QPAPETYDLFDDIILLSD 372
LF + +SN LD++ + S+R+ I L I+ L E + + D +I+++
Sbjct: 158 LLFDEPLSN-LDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK 212
Query: 373 GQIVYQGP 380
G+I+ G
Sbjct: 213 GKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-06
Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 54/262 (20%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF---V 195
IL D+S IK T ++G SGK+TL L G + SG + NG + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 196 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
++ Y+ Q + +I ++ E L A+ D + A IK D I+
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGAK---ENVSQDEIWAACEI---AEIKDD--IEN 596
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
TE E ISGGQK+R+ ++ +
Sbjct: 597 MPLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSK 631
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISL---LQPAPETYDLFDDIILLSD 372
L +DE ++ LD+ T IVN+L L +I + L A ++ D II+L
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLN----LQDKTIIFVAHRLSVAKQS----DKIIVLDH 683
Query: 373 GQIVYQGPCELVLD---FFESM 391
G+I+ QG + +LD F+ S+
Sbjct: 684 GKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 25/156 (16%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR--ISGYCEQN 903
G A++G SGAGK+TL++++AG T SG++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 904 DIHSPLVTVYE--SLLYSAWLRL----RTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
++ S L TV + L + L+L R ++ + R+M IE+++ R LP
Sbjct: 81 NLFSHL-TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
G+ LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 GQ--LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 33/215 (15%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYISGNITISGYPKK 889
+L V +PG + G +G+GK++L +D+ G+ I G I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLPL- 90
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
+R+S + + + +L+S +R + + + + E +E+ +LK +
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 950 RQSLVG------LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
+SL G G S QR+ +A V SI+ MDE T+ +D I+ +
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV 198
Query: 1004 VKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
V T RTVV H+ S I +A D + ++ RG
Sbjct: 199 VM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 50/204 (24%), Positives = 75/204 (36%), Gaps = 62/204 (30%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187
++ +LKD+S I G ++GP +GK+TLL LAG+L +SG V
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKV- 381
Query: 188 GHDMNEFVPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAG 246
G + Y QH D + TV + L+E
Sbjct: 382 GETVK-------IGYFDQHRDELDPDKTV----------------LEELSEG-------- 410
Query: 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM---VRGISGGQKKR 303
+G E V YL G G++ V +SGG+K R
Sbjct: 411 --------------FPDGDEQEVRA--YLGRFGFT-------GEDQEKPVGVLSGGEKAR 447
Query: 304 LTTGEMMVGPALALFMDEISNGLD 327
L ++++ P L +DE +N LD
Sbjct: 448 LLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 57/248 (22%), Positives = 96/248 (38%), Gaps = 55/248 (22%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-- 197
L ++ ++PG L+GP +GK+TL L D SGR+ +G D+ + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
R + D + +V E + + R D E A
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYG--------RPDATDEEVEAAARA------------ 452
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALAL 317
A A E + L DT +G+ V +SGGQ++R+ ++ A L
Sbjct: 453 -AHAHE------------FISALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPIL 498
Query: 318 FMDEISNGLDSSTTFHIVNSL------RQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371
+DE ++ LD+ + + +L R + I + A + A D I+++
Sbjct: 499 LLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV---LKA-------DRIVVMD 548
Query: 372 DGQIVYQG 379
G+IV QG
Sbjct: 549 QGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 50/241 (20%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
IL ++S ++ G + GP GK+TLL +A L S SG + + G D++ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEA 74
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
+ +Y +Q G+ TV + L F + R + +D+
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNRR---PDRAAALDL 116
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT-TGEMMVGPA 314
+ A L D L + + +SGG+K+R+ + P
Sbjct: 117 LARFA---------LPDSIL--------------TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374
+ L +DEI++ LD S + + AV+ + + D +I L G
Sbjct: 154 I-LLLDEITSALDESNK-RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGH 211
Query: 375 I 375
Sbjct: 212 A 212
|
Length = 223 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 34/220 (15%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YISGNITISGYPKKQET 892
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 893 FTRISGYCEQNDIHSPL-----VTVYESLLY-----SAWLRLRTEVDSETRKMFIEEIME 942
I IH L +T+ E++ + + R+ + +KM+ E
Sbjct: 80 GIGI--------IHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 943 LVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1002
L L LR S L GE LS +++ + IA L +I MDEPT L + R
Sbjct: 126 LARLN-LRFSSDKLVGE--LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
Query: 1003 TVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042
++ GR +V H+ +IFE D++ + R GQ I
Sbjct: 183 VIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L VS + G A++G +G+GK+TL +L G +G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 896 IS---GYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
+ G QN D TV + + + E R+ +E + + + +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFG------LENIGVPREEMVERVDQALRQVGMED 132
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
L P LS Q++R+ IA L P II +DE TS LD R V+ TV+ E
Sbjct: 133 FLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 1012 R-TVVCTIHQPSIDIFEAF--DELFLMKRG 1038
TV+ H D+ EA D + +M +G
Sbjct: 191 GITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 26/191 (13%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYISGNITISGY--PKKQETFTRIS 897
R G + L+G +G GK+T + +LAG+ K + + + + Q FT++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL- 82
Query: 898 GYCEQNDIHSPLVTV-YESLLYSAW----LRLRTEVDSETRKMFIEEIMELVELKPLRQS 952
+V Y L+ A L + D E K+ +E+++ +EL+ +
Sbjct: 83 ----LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKD-ERGKL--DELVDQLELRHVLDR 135
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1012
+ LS + +R+ IA L + F DEP+S LD + R ++ E
Sbjct: 136 NI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 1013 TVVCTIHQPSI 1023
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 851 TALMGVSGAGKTTLMDVLAG--RKTGGYISGN--------ITISGYPKKQETFTRISGYC 900
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 901 EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960
Q+ P V +L Y + F ++I+ L+ ++PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 17/202 (8%)
Query: 829 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYISGNITISG 885
G HE +L GVS G + +++G SG+GK+T ++ L G I
Sbjct: 17 GEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRL 72
Query: 886 YPKKQETFTRISGYCEQNDIHSPLVTVYESL-LYSAWLRLRT------EVDSETRKMFIE 938
K + + + + + L V++ L+S L V ++ IE
Sbjct: 73 KRDKDGQ-LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIE 131
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
+ + + + P LS Q++R+ IA L P ++ DEPTS LD
Sbjct: 132 RAEKYLAKVGIAEKADAYPAH--LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189
Query: 999 IVMRTVKNTVETGRTVVCTIHQ 1020
V++ +++ E GRT+V H+
Sbjct: 190 EVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 37/218 (16%)
Query: 849 VLTALMGVSGAGKTTLM---DVLAGRKTGGYISGNITISG---YPKKQETFT--RISGYC 900
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 901 EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE--LKP------LRQS 952
Q P +T+Y+++ + ++L V S+ +E+ E VE LK ++
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1012
L P LS QR+RL IA L P I+ MDEPT+ +D A + + ++
Sbjct: 143 LNDYPSN--LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1013 TVVCTIHQPS----IDIFEAFDELFLMKRGGQEIYVGP 1046
T+V H P+ + + AF L+L G+ I VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYISGNITISG-----YPK 888
+ G+S G AL+G SG+GK+ +++ +L + SG+I G +
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASE 84
Query: 889 KQETFTRISGYCEQNDIH----------SPLVTVYESLLYSAWLRLRTEVDSETRKMFIE 938
+Q + G N I +PL T+ L LRL + +
Sbjct: 85 RQ--LRGVRG----NKIGMIFQEPMTSLNPLHTI-GKQLAEV-LRLHRGLSRAAARARAL 136
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
E++ELV + + L P E LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 137 ELLELVGIPEPEKRLDAYPHE--LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 831 HEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYP 887
H K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ +
Sbjct: 14 HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ 73
Query: 888 KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK 947
+ ++ E + S + TV E+L + R F E I + EL
Sbjct: 74 TAKIMREAVAIVPEGRRVFSRM-TVEENLAMGGFF--------AERDQFQERIKWVYELF 124
Query: 948 P-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
P L + + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +
Sbjct: 125 PRLHERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFD 178
Query: 1007 TVETGRTVVCTI 1018
T+E R TI
Sbjct: 179 TIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 821 MPKEMKLK--GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AG 870
M ++KL+ VH K + VS F +TA++G SG GK+T++ + +
Sbjct: 1 MNNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSA 60
Query: 871 RKTGGYISGNITISGYPKKQE--TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEV 928
R TG + + I Y + + + R G Q P +++Y++++ A +L V
Sbjct: 61 RVTGKILLDDTDI--YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRV 116
Query: 929 DSETRKMFIEEIMELVEL-KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987
+ +E ++ V L ++ L E LS Q++RL IA + P +I MDE
Sbjct: 117 NRSEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIARTIAVKPEVILMDE 174
Query: 988 PTSGLD 993
P S LD
Sbjct: 175 PASALD 180
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 40/178 (22%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISG---YP 887
L ++ +TAL+G SG GK+T + D++ K I G + + G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDGQDIYK 74
Query: 888 KK---QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
+ R+ G Q P+ ++Y+++ Y RT + +K+ +EI+E
Sbjct: 75 SDIDVNQLRKRV-GMVFQQPNPFPM-SIYDNVAYGP----RTHGIKDKKKL--DEIVE-- 124
Query: 945 ELKPLRQSLVGLPGES---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
K L+ + L E GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 125 --KSLKGA--ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 44/251 (17%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
L+ +S ++ G ++GP SGK+TL + G SG V +G D+ ++ +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSGSVRLDGADLKQWDRE 388
Query: 198 ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
+ Y+ Q DV + TV E +A R+ E A EK
Sbjct: 389 TFGKHIGYLPQ-DVELFPGTVAENIA----------RFG---ENADPEKII--------- 425
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
EA L + +L L DT++G +SGGQ++R+ + G
Sbjct: 426 -----------EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDP 473
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374
+ +DE ++ LD + N+++ + T V+ +P+ D I++L DG+
Sbjct: 474 KLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVDKILVLQDGR 530
Query: 375 IVYQGPCELVL 385
I G + VL
Sbjct: 531 IARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM--NEFVPQ 197
L +VS + GR+ LGP +GK+T + + G L SG V G D+ N Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 231
R Y+ +H+ +M VRE L F A G+ +
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1020
LS Q++R++IA L P ++ DEPTS LD V+R ++ E G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 23/180 (12%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 898 GYCEQND---IHSPL-----VTVYESL-LYSAWLRL-RTEVDSETRKMFIEEIMELVELK 947
E+ IH L ++V E++ L + + D M++ L +LK
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD----AMYLRAQKLLAQLK 132
Query: 948 PLRQSLVGLP-GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
L + P G GL +Q + IA L ++ +DEPT+ L A+++ +++
Sbjct: 133 -LDIN-PATPVGNLGLGQQQ--LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 42/212 (19%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----SGNITISGYPKKQETF 893
L VS G L+G +GAGK+TL+ +LAG I SG +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 894 TRISGYCEQNDIHSPLVTVYESLLYSAWL--RLRTEVDSETRKMFIEEIMELVEL----- 946
R+S +P +T E++ + L R E+D I+EI+E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSELGDFID 137
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
P++ S+ + RL A+ P I+ +DE + DA R ++
Sbjct: 138 LPVKT----------YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE 187
Query: 1007 TVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
++ G+TV+ H PS I D ++++G
Sbjct: 188 LLKQGKTVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYP-KKQ-E 891
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 892 TFTRISGYC-EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK--- 947
+ + Y Q I +T E+L + RL D E + E + V L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----LWEALAQVGLAGFE 123
Query: 948 --PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
P+RQ LS Q++R+ +A + + +DEP + +D + A + +
Sbjct: 124 DVPVRQ----------LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173
Query: 1006 NTVETGRTVVCTIHQP 1021
E G V+ T HQ
Sbjct: 174 QHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 19/166 (11%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNIT-ISGYPKKQETF 893
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 894 TRISGYCEQNDIHSPL---VTVYESLLYS-AWLRLRTEVDSETRKMFIEEIMELVELKPL 949
R G+ Q H L +TV++++ + L R ++ K + +++E+V+L L
Sbjct: 74 -RKVGFVFQ---HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL 129
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
+ LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 130 ADRY-----PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 52/247 (21%), Positives = 85/247 (34%), Gaps = 89/247 (36%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+LK++S +K G LLG SGK+TLL L G L G +T
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEIT------------ 60
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
+ V E + ++ L + +P LF
Sbjct: 61 -----LDGVPVSDLEKALSSLISV-------------LNQ----------RPYLF----- 87
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALAL 317
DT + + + R SGG+++RL +++ A +
Sbjct: 88 ---------------------------DTTLRNNLGRRFSGGERQRLALARILLQDAPIV 120
Query: 318 FMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL-----FDDIILLSD 372
+DE + GLD T + L +L +I + T+ L D I+ L +
Sbjct: 121 LLDEPTVGLDPITERQL---LSLIFEVLKDKTLIWI------THHLTGIEHMDKILFLEN 171
Query: 373 GQIVYQG 379
G+I+ QG
Sbjct: 172 GKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 40/181 (22%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQ 890
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 891 ETFTRISGYCEQNDIH----------SPLVTVYESLLYSAWLRL--RTEVDSETRKMFIE 938
R + SP +TV + + LR+ +E + IE
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIE 408
Query: 939 EIMELVELKPLRQSLVGLPGES------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
+ E VGL + S QR+R+ IA L+ P +I +DEPTS L
Sbjct: 409 ALEE-----------VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457
Query: 993 D 993
D
Sbjct: 458 D 458
|
Length = 534 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 5e-06
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 14/176 (7%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYISGNITISG---YPKKQE 891
L+G+S F LTAL+G SG GK+T + L I+G I G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 892 --TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL-KP 948
+ G Q P +VY+++ Y L++ D E +EE ++ + K
Sbjct: 80 LVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
+ +L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 137 TKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 42/246 (17%)
Query: 809 SLTFDDV--TYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 866
+ +V TY A P E + L V+ G TA +G +G+GK+T+M
Sbjct: 2 GINLQNVSYTYQAGTPFEGRA----------LFDVNLTIEDGSYTAFIGHTGSGKSTIMQ 51
Query: 867 VLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDI-----HSPLVTVY-ESLLYSA 920
+L G G++ + T I+ + DI LV + ES L+
Sbjct: 52 LLNGLHVP--TQGSVRVDD--------TLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE 101
Query: 921 WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGL--------PGESGLSTEQRKRLTI 972
+ + + EE L K +LVG+ P E LS Q +R+ I
Sbjct: 102 TVLKDVAFGPQNFGVSQEEAEALAREK---LALVGISESLFEKNPFE--LSGGQMRRVAI 156
Query: 973 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDEL 1032
A L P I+ +DEPT+GLD + +M K ++G T+V H D+ D +
Sbjct: 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFV 215
Query: 1033 FLMKRG 1038
+++++G
Sbjct: 216 YVLEKG 221
|
Length = 280 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 5e-06
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L+G+S P ++G +GAGK+++++ L + G I I + T
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 897 SGYCEQNDIHSPLVTVYES-LLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLV 954
D+ L + +S +L+S +R + SE + E +E +K + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 955 GLPGE-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
GL E S QR+ L++A L+ I+ +DE T+ +D R +++ RT++
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 38/160 (23%)
Query: 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS-- 907
LT L+G SG GKTT++ ++AG +T SG I + G + T + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 908 ------PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL------KPLRQSLVG 955
P +TV+E++ + LR++ +E + E + +V+L KP +
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAAEITPR-VMEALRMVQLEEFAQRKPHQ----- 144
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 ------LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-06
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYISGNITISGYPKKQE 891
V++ +S RPG L+G SG+GK+T L+ ++ + G I G P
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNL 352
Query: 892 TFTRISGYCEQ--------NDIHSPLVTVYESLLYSAWLRL-RTEVDSETRKMFIEEIME 942
++ + N +P + V + + LR+ + + + R+ + +ME
Sbjct: 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVME 410
Query: 943 LVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
V L P R P E S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 411 EVGLDPETRHRY---PAE--FSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 292 MVRGISGGQKKRLTTGEMMVG-PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV 350
V +SGGQ++R+ ++ P L L +DE ++GLD ++ ++ LR+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 351 ISLLQPAPETYDLFDDIILLSDGQ 374
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 30/171 (17%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YISGNITISGYPKKQETF 893
L+GVS G A++G SG GK+TL + + TGG Y G + P+ Q+
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 894 TRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
+ QN S P V + L L + T + + R+ +M V L+P
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVGLRP--- 145
Query: 952 SLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
E SG QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 146 -------EHYDRYPHMFSG---GQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 34/199 (17%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISGYPKKQ 890
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 891 ETFT-----RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
F R G Q + L+++Y+++ Y ++ K ++EI+E
Sbjct: 79 NNFDILELRRKIGMVFQTP-NPFLMSIYDNISYGP------KIHGTKDKKKLDEIVE--- 128
Query: 946 LKPLRQSLVGLPGESGLSTE-------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
+ L++S + + L+T Q++RL IA L P++I MDEPTS LD +
Sbjct: 129 -QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTG 187
Query: 999 IVMRTVKNTVETGRTVVCT 1017
+ + N E+ ++ T
Sbjct: 188 KIEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 852 ALMGVSGAGKTTLMDVL--------AGRKTGG---YISGNI-TISGYPKKQETFTRISGY 899
+MG SG+GK+TL+ VL + K G Y +I I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 900 CEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959
Q P +++Y+++ Y L+ + K +EE + V L + P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA- 151
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
S LS Q++RLTIA L P ++ MDEPTS +D + + + + ++ +V H
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSH 210
Query: 1020 QP 1021
P
Sbjct: 211 NP 212
|
Length = 257 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 62/211 (29%), Positives = 88/211 (41%), Gaps = 43/211 (20%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYISGNITISGYPKKQETFT 894
L GVS +TAL+G SG GK+T + L R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 895 RIS-----GYCEQNDIHSPLVTVYESLLYS------------AWLRLRTEVDSETRKMFI 937
+ G Q+ P ++ E++ Y A L R + D+E
Sbjct: 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAED----- 174
Query: 938 EEIMELVELKPLRQSLVGLPGES---------GLSTEQRKRLTIAVELVANPSIIFMDEP 988
ELVE + LRQ+ L E GLS Q++RL IA L +P +I MDEP
Sbjct: 175 ----ELVE-RSLRQA--ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEP 227
Query: 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
S LD A + + ++ E TVV H
Sbjct: 228 ASALDPIATSKIEDLIEELAEE-YTVVVVTH 257
|
Length = 305 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-06
Identities = 51/216 (23%), Positives = 72/216 (33%), Gaps = 68/216 (31%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTT---LLLALAGQLDSSLKVSGRVTYNGHDMNEF 194
++ +S ++ G LLGP +GKTT +LL L S+ + G E
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG----------EP 70
Query: 195 VPQRT------AAYISQHDVHIGEMTVRETLAFSARCQGVGS-----RYDMLTELARREK 243
VP R + Q D + TVRE L R G+ + L E A+ E
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN 130
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
+A D V +SGG K+R
Sbjct: 131 KA--------------------------------------------DAKVGELSGGMKRR 146
Query: 304 LTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLR 339
LT +V L +DE + GLD + LR
Sbjct: 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182
|
Length = 306 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 64/279 (22%), Positives = 103/279 (36%), Gaps = 78/279 (27%)
Query: 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG 188
+ +T LKDVS + G + ++G +GK+TL+ + G L+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERP--TSGSVLVDG 66
Query: 189 HDMNEFVP------QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARRE 242
D+ +R I QH + TV E +A GV + E
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV----------PKAE 116
Query: 243 KEAGIKPDL-FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQK 301
E + L + + KA A Q +SGGQK
Sbjct: 117 IEERVLELLELVGLEDKADAYPAQ------------------------------LSGGQK 146
Query: 302 KRLTTGEMMVGPALAL-------FMDEISNGLDSSTTFHIVNSLRQ-----NIHILNGTA 349
+R VG A AL DE ++ LD TT I+ LR + I+ T
Sbjct: 147 QR-------VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199
Query: 350 VISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFF 388
+ +++ + D + ++ G++V +G V + F
Sbjct: 200 EMEVVK------RICDRVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 50/251 (19%), Positives = 95/251 (37%), Gaps = 52/251 (20%)
Query: 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF 194
+HL + D++ + G + ++GP +GK+TLL +AG ++ SG + N
Sbjct: 11 EHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGL 65
Query: 195 VP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
P QR + + Q + +TVR+ + G+ P L
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPGL-- 99
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR---GISGGQKKRLTTGEMM 310
K A + ++ D + D + R +SGGQ++R+ +
Sbjct: 100 ----KLNAEQQEKVV------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCL 143
Query: 311 VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370
V P L +DE + LD ++ ++Q T ++ + + + I ++
Sbjct: 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVV 202
Query: 371 SDGQIVYQGPC 381
S G+I C
Sbjct: 203 SQGKIKVVSDC 213
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 66/291 (22%), Positives = 117/291 (40%), Gaps = 50/291 (17%)
Query: 126 SIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTL---LLALAGQLDSSLKVSG 182
+T + LT+L ++ + G L+GP SGK+T+ L+ L + ++V G
Sbjct: 2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG 61
Query: 183 RVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARRE 242
Y+ N + ++ Q IG M + F + D +TE
Sbjct: 62 EQLYHMPGRNGPLVPADEKHLRQMRNKIG-MVFQSFNLFPHKTV-----LDNVTEAPVLV 115
Query: 243 KEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302
G+ A E + + L ++GL AD D M +SGGQ++
Sbjct: 116 L--GMAR----------AEAEKRAMEL-----LDMVGL---ADKA--DHMPAQLSGGQQQ 153
Query: 303 RLTTGE-MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE-- 359
R+ + + P + LF DE+++ LD ++N +R+ L +++L E
Sbjct: 154 RVAIARALAMRPKVMLF-DEVTSALDPELVGEVLNVIRR----LASEHDLTMLLVTHEMG 208
Query: 360 -TYDLFDDIILLSDGQIVYQG-PCELVLDFFESMGFKCPERKSVADFLQEV 408
+ D + G+IV QG P E+ F+ P+ + +FL +V
Sbjct: 209 FAREFADRVCFFDKGRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 77/204 (37%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISGYPKKQ 890
L V +TA +G SG GK+T + D + G + ++G IT+ G
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDG----- 85
Query: 891 ETFTRISGYCEQNDIHSPLV---------------------TVYESLLYSAWL----RLR 925
DI+ P + ++YE++ Y + R +
Sbjct: 86 ------------EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSK 133
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE---------SGLSTEQRKRLTIAVEL 976
E+D E+VE LR++ GL E +GLS Q++RL IA +
Sbjct: 134 AELD------------EIVE-TSLRKA--GLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178
Query: 977 VANPSIIFMDEPTSGLDARAAAIV 1000
+P +I MDEP S LD A A V
Sbjct: 179 AVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 58/272 (21%), Positives = 96/272 (35%), Gaps = 64/272 (23%)
Query: 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN 192
K L +VS I+ G ++G SGK+TL LAG S SG + +G +
Sbjct: 16 GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLA 72
Query: 193 EFVPQRTAA----YISQH---DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEA 245
+ + Q ++ TV L+ R G+ + EL +
Sbjct: 73 PKKRAKAFYRPVQMVFQDPYSSLN-PRRTVGRILSEPLRPHGLSKSQQRIAELL---DQV 128
Query: 246 GIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT 305
G+ P L ++ SGGQ++R+
Sbjct: 129 GLPPS------------------FLDRRPHEL-------------------SGGQRQRIA 151
Query: 306 TGE-MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV-----ISLLQPAPE 359
++ P L L +DE ++ LD S I+N L + T + ++L+
Sbjct: 152 IARALIPEPKL-LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV----- 205
Query: 360 TYDLFDDIILLSDGQIVYQGPCELVLDFFESM 391
+ D I ++ +GQIV GP E +L
Sbjct: 206 -EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 56/253 (22%), Positives = 96/253 (37%), Gaps = 44/253 (17%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSGRVTYNGHDMNE---- 193
+K+V+ ++ G + L+GP GKTT L A+ L +V+GR+ +G D+
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 194 -FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+R + Q M+V + + + G+ R D L E+A R D
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWDEV 138
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
D +K AT G+SGGQ++RL +
Sbjct: 139 KDR-LKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372
L MDE ++ LD ++T I + + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 373 GQIVYQGPCELVL 385
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLF 235
|
Length = 252 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 62/278 (22%), Positives = 107/278 (38%), Gaps = 76/278 (27%)
Query: 124 FNSIHILTTKKKHLTILK--------DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL- 174
S +T + + L IL ++ + G+ L+GP +GKT+LL AL G L
Sbjct: 342 LASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP 401
Query: 175 -DSSLKVSGRVTYNGHDMNEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230
SLK+ NG ++ E P+ + +++ Q + + T+R+ +
Sbjct: 402 YQGSLKI------NGIELRELDPESWRKHLSWVGQ-NPQLPHGTLRDNVLLG-------- 446
Query: 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLK------VLGLDVCA 284
A++ Q L + ++ GLD
Sbjct: 447 ---------------------------NPDASDEQLQQALENAWVSEFLPLLPQGLD--- 476
Query: 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH- 343
T +GD+ G+S GQ +RL ++ P L +DE + LD+ + ++ +L
Sbjct: 477 -TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR 534
Query: 344 --ILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
L T + L +D I ++ DGQIV QG
Sbjct: 535 QTTLMVTHQLEDLAQ-------WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISG---YP 887
L+ +S F +TAL+G SG GK+T + D++ G + + G I + G Y
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDGENIYD 77
Query: 888 KKQE--TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
+ R G Q P +++E++ Y LR V+ K ++ E +E
Sbjct: 78 PHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYG----LR--VNGVKDKAYLAERVE--- 127
Query: 946 LKPLRQSLV-----GLPGES--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
+ LR + + ES GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 128 -RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 57/192 (29%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L + + VL + GVSG+GK+TL+ G Y SG + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKFS------ 58
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK----PLRQSL 953
+ L+ FI+++ L+++ L Q L
Sbjct: 59 --------RNKLI-------------------------FIDQLQFLIDVGLGYLTLGQKL 85
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
S LS + +R+ +A EL + P ++ +DEP++GL + ++ +K ++ G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1012 RTVVCTIHQPSI 1023
TV+ H +
Sbjct: 140 NTVILIEHNLDV 151
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 28/205 (13%)
Query: 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYISGNITISGY 886
+L +L VS G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 887 PKKQETFTRIS--GYCEQNDIHSPLVT----VYESLLYSAWLR--LRTEVDSETRKMFIE 938
++ R GY Q P V+ V E LL R R ++ I
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
E L L P + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 140 E--RLWHLPP-----------ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 999 IVMRTVKNTVETGRTVVCTIHQPSI 1023
+V+ + G ++ H +
Sbjct: 187 VVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 60/264 (22%), Positives = 110/264 (41%), Gaps = 45/264 (17%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T+ ++++ I G T ++GP GK+TLL L+ + G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 198 RTAAYI---SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
A I +Q+ G++TV+E +A RY R KE
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVA--------RGRYPHQPLFTRWRKED--------- 120
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
+ A T+ +A +T + D+ V +SGGQ++R ++
Sbjct: 121 ---EEAVTKAMQATGITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374
+ +DE + LD S ++ L + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 375 IVYQG-PCELVL-DFFESM-GFKC 395
IV QG P E+V + E + G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-SGNITISGYPKKQETFT 894
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 895 RIS-GYCEQNDIHSPLV--TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
R G Q+ H L+ TVY+++ + + D R + ++ V L +
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKVGLLDKAK 132
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
+ P + LS +++R+ IA +V P+++ DEPT LD + ++R + G
Sbjct: 133 N---FPIQ--LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1012 RTVVCTIH 1019
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 850 LTALMGVSGAGKTTLMDVLAGRK---TGGYISGNITISG---YPKKQETFT--RISGYCE 901
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 902 QNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL-----KPLRQSLVGL 956
Q P+ ++Y+++ Y R+ D + +E ++ L L++S + L
Sbjct: 92 QKPNPFPM-SIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKL 148
Query: 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
G Q++RL IA + P +I MDEPTS LD
Sbjct: 149 SGG------QQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 61/252 (24%), Positives = 107/252 (42%), Gaps = 57/252 (22%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
++++ S ++PG+ L+G SGK+T+ +AG SG + ++G E +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 199 TAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
A ++ D+ + E TVR+ L + D +L R K+A I DV
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDP-----TIPD--ADLVRACKDAAIH-----DVI 598
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG-PAL 315
+ G +A + E +SGGQ++RL +V P++
Sbjct: 599 T--SRPGGYDAELA--------------------EGGANLSGGQRQRLEIARALVRNPSI 636
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI-----SLLQPAPETYDLFDDIILL 370
L +DE ++ LD T I ++LR+ T +I S ++ D+II+L
Sbjct: 637 -LILDEATSALDPETEKIIDDNLRRR----GCTCIIVAHRLSTIRDC-------DEIIVL 684
Query: 371 SDGQIVYQGPCE 382
G++V +G E
Sbjct: 685 ERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 62/249 (24%), Positives = 94/249 (37%), Gaps = 65/249 (26%)
Query: 149 PGR-MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG---HDM--NEFVP--QRTA 200
P R +T L GP SGKT+L+ +AG GR+ NG D F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 201 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAA 260
Y+ Q TVR L + + + +++D L L GI+ L
Sbjct: 79 GYVFQDARLFPHYTVRGNLRY-GMWKSMRAQFDQLVAL------LGIEHLL--------- 122
Query: 261 ATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE-MMVGPALALFM 319
D +SGG+K+R+ G ++ P L L M
Sbjct: 123 -----------------------------DRYPGTLSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 320 DEISNGLDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376
DE LD I + LR I+I ++ + E L D +++L +G++
Sbjct: 153 DEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208
Query: 377 YQGPCELVL 385
GP E V
Sbjct: 209 ASGPLEEVW 217
|
Length = 352 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 59/252 (23%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNE-FVPQRT 199
D++ +K G + L+G SGK+ LA+ G L L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 200 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
A I Q+ T L F+ + L K + L ++
Sbjct: 64 IATIMQN-----PRTAFNPL-FTMGNH-------AIETLRSLGKLSKQARALILEALEAV 110
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA--- 316
+ +E VL Y + +SGG +R +M+ AL
Sbjct: 111 GLPDPEE--VLKKYPFQ-------------------LSGGMLQR-----VMIALALLLEP 144
Query: 317 --LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL------FDDII 368
L DE + LD ++ LR+ + L GT ++ + T+DL D++
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRE-LRQLFGTGILLI------THDLGVVARIADEVA 197
Query: 369 LLSDGQIVYQGP 380
++ DG+IV +G
Sbjct: 198 VMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 28/224 (12%)
Query: 832 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKK 889
+ L VS G A++G +G+GK+T+ +L G + SG I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITIS 74
Query: 890 QETFTRIS---GYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
+E I G QN D TV + + + + V + K I+++ + V
Sbjct: 75 KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKKVG 131
Query: 946 LKPLRQSLVGLPGES-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
++ L E LS Q++R+ IA L NP II DE TS LD + + + +
Sbjct: 132 MEDY------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 1005 KNTVETG-RTVVCTIHQPSIDIFEAF--DELFLMKRGGQEIYVG 1045
+ +T +T++ H D+ EA D++ + G+ I G
Sbjct: 186 VDLRKTRKKTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 952 SLVGLPGES------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1006 NTVETGRTVVCTIH 1019
N + G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGY-ISGNITISGYP----KK 889
+L+ VS F +T+LMG +G+GKTT + L K GY SG++ + G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD-SETRKMFIEEIMELVELKP 948
F R G Q P+ ++ +++L A +R V E R + + E+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPM-SIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +++
Sbjct: 153 VKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1009 ETGRTVVCT 1017
+ ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 850 LTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITISGYPKKQETFT----RISGYCEQND 904
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 905 IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL-----KPLRQSLVGLPGE 959
+ + ++YE++ Y+ L + + + + + + ++ V L L+Q+ + L G
Sbjct: 90 VF--VKSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGG 146
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
Q++RL IA L P ++ +DEPTS LD ++ ++ +K
Sbjct: 147 ------QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
LT ++ + +S + G + GP SGKTTLL LAG S ++GRV NG
Sbjct: 6 LTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL---SPPLAGRVLLNGG 62
Query: 190 DMNEFVP--QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELAR 240
++ R Y+ ++V E L F S + LAR
Sbjct: 63 PLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR 112
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 125 NSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSG 182
+ + + KKK L VS P +T L+GP SGK+TLL ++ L+ + ++G
Sbjct: 9 SDLSVYYNKKK---ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITG 65
Query: 183 RVTYNGHDM 191
+ YNGH++
Sbjct: 66 SIVYNGHNI 74
|
Length = 252 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 66/261 (25%), Positives = 101/261 (38%), Gaps = 68/261 (26%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE----FV 195
LK +S I G T LLGP +GK+TLLL L G L GRV G ++N +V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG---IYLPQRGRVKVMGREVNAENEKWV 77
Query: 196 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
+ D + TV + +AF G+ E+ RR +EA
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA---------- 122
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT-TGEMMVGPA 314
LK + + D+ +S GQKKR+ G + + P
Sbjct: 123 -------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLAMDPD 158
Query: 315 LALFMDEISNGLDSS---TTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL------FD 365
+ + +DE LD T I++ L G VI T+D+ D
Sbjct: 159 V-IVLDEPMAYLDPRGQETLMEILDRLHN-----QGKTVIV------ATHDVDLAAEWAD 206
Query: 366 DIILLSDGQIVYQGPCELVLD 386
+I+L +G+++ +G L+ D
Sbjct: 207 QVIVLKEGRVLAEGDKSLLTD 227
|
Length = 274 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 54/220 (24%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
LK ++ I ++T L+GP GK+TLL L L +K++G++T +G D+ +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID- 77
Query: 198 RTAAYISQHDVHIG---------EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIK 248
++ + +G M++ E +A+ R QG+ + +
Sbjct: 78 -----VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVL-------------- 118
Query: 249 PDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE 308
D ++ ++ AA D D L G+SGGQ++RL
Sbjct: 119 -DEVVERSLRGAAL-----------------WDEVKDRL--KSHAFGLSGGQQQRLCIAR 158
Query: 309 MMVGPALALFMDEISNGLDSSTTFHI---VNSLRQNIHIL 345
+ + MDE ++ LD T I + L++N I+
Sbjct: 159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIV 198
|
Length = 249 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 33/162 (20%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFT 894
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 895 RISGYCEQN---DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ 951
RI GY Q D PL TV + +LRLR +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLPL-TV------NRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAPMQK-LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 3e-05
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985
+EV ++K+ I + + + K ++LVG S LS Q++R++IA ++ NP I+ +
Sbjct: 547 SEVVDVSKKVLIHDFVSALPDK--YETLVG-SNASKLSGGQKQRISIARAIIRNPKILIL 603
Query: 986 DEPTSGLDARAAAIVMRTVKN 1006
DE TS LD ++ +V +T+ N
Sbjct: 604 DEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 68/260 (26%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL---DSSLKVSGR-VTYNGHDMNEFV 195
LK ++ + G M LLGP +GK+TL L G L + + G + Y+ + E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 196 PQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
++T + Q+ D + TV E +AF G+ E+ +R KEA
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT-TGEMMVGP 313
+KA EG E ++ +SGGQKKR+ G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 314 ALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG---TAVISLLQPAPETYDL------F 364
+ + +DE ++GLD I+ L + LN T +IS T+D+
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLL----YDLNKEGITIIIS-------THDVDLVPVYA 204
Query: 365 DDIILLSDGQIVYQGPCELV 384
D + ++SDG+I+ +G + V
Sbjct: 205 DKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 64/287 (22%), Positives = 111/287 (38%), Gaps = 68/287 (23%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEFVPQ 197
LK VS I +T L+GP GK+T L L D + ++ G V +G D
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD------- 113
Query: 198 RTAAYISQHDVHIGEM----------------TVRETLAFSARCQGVGSRYDMLTELARR 241
I Q V++ E+ ++RE +++ R G + + L R
Sbjct: 114 -----IYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRD 168
Query: 242 EKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQK 301
+K+A D ++ ++ AA + + L D L G+SGGQ+
Sbjct: 169 DKDA---EDELVERSLRQAALWDEVNDRLDDNAL-------------------GLSGGQQ 206
Query: 302 KRLTTGEMMVGPALALFMDEISNGLDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAP 358
+RL + + MDE ++ LD T I + L + ++ V +Q A
Sbjct: 207 QRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVV---VVTHNMQQAA 263
Query: 359 ETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405
D + L+ G++V + + F+ PE + V D++
Sbjct: 264 RISD--QTAVFLTGGELVEYDDTDKI--------FENPESQRVEDYI 300
|
Length = 305 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 850 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YISGNITISGYPKKQETFTRISGY 899
+TA++G SG GK+T +++++ KT G Y NI Y +E T +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 900 CEQNDIHSPL-VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG--- 955
++ + P ++Y+++ Y ++ K ++EI+E K LR + +
Sbjct: 111 FQKPN---PFPKSIYDNVTYGP------KIHGIKDKKTLDEIVE----KSLRGAAIWDEL 157
Query: 956 ----LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 158 KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 60/285 (21%)
Query: 129 ILTTKKKHLT-----ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGR 183
IL K H + ILK ++ I G + ++GP SGK+TL +AG + + G
Sbjct: 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGD 65
Query: 184 VTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQ--GVGSRYDMLTELA-- 239
+ + G + + P+ A H+G LAF + GV S D L LA
Sbjct: 66 ILFKGESILDLEPEERA--------HLGIF-----LAFQYPIEIPGV-SNADFL-RLAYN 110
Query: 240 RREKEAGIKPDL----FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295
+ K G P+L F+++ + LK++G+D + + + G
Sbjct: 111 SKRKFQG-LPELDPLEFLEIINEK---------------LKLVGMD---PSFLSRNVNEG 151
Query: 296 ISGGQKKRLTTGEM-MVGPALALFMDEISNGLDSS---TTFHIVNSLR-QNIHILNGTAV 350
SGG+KKR +M ++ LA+ +DE +GLD +N L I+ T
Sbjct: 152 FSGGEKKRNEILQMALLDSELAI-LDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210
Query: 351 ISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKC 395
LL Y D + ++ +G+I+ G EL + E G+
Sbjct: 211 QRLLD-----YIKPDYVHVMQNGKIIKTGDAELAKE-LEKKGYDW 249
|
Length = 252 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008
LR+ L+ P + LS +++RL A L+ P +F+DE TS LD + + + +K
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1009 ETGRTVVCTIHQPSIDIF 1026
E G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
S LS Q++R++IA L+ +I DEPT LD+ + VM + + G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1020 QPSI 1023
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 853 LMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY---------PKKQETFTRISGYCEQN 903
L+G SGAGK++L+ VL + SG + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 904 DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963
P +TV ++L+ A R+ + + +L+E L+ P LS
Sbjct: 91 YNLWPHLTVQQNLI-EAPCRVLGLSKDQA----LARAEKLLERLRLKPYADRFPLH--LS 143
Query: 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1020
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ ETG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 53/198 (26%)
Query: 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPL 909
+TAL+G SG GK+T + L N I G+ + Y + DI+ P
Sbjct: 31 VTALIGPSGCGKSTFIRTLN--------RMNDLIPGFRHEGHI------YLDGVDIYDPA 76
Query: 910 V---------------------TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP 948
V ++++++ Y LR+ E D + FIEE +E +
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYG--LRIHGEDDED----FIEERVE----ES 126
Query: 949 LRQSLVGLPGES-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
L+ + + + GLS Q++RL IA + +P +I MDEP S LD + +
Sbjct: 127 LKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP-ISTTKI 185
Query: 1002 RTVKNTVETGRTVVCTIH 1019
+ + ++ T+V H
Sbjct: 186 EDLIHKLKEDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 65/283 (22%), Positives = 107/283 (37%), Gaps = 76/283 (26%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP--- 196
+ +++ I G +L+GP SGKTT + + ++ + SG + +G D+ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 197 QRTAAYISQHDVHIG---EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
+R Y+ Q IG MTV E +A + + + A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWPK--------EKIRERA-------- 114
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGP 313
D L ++GLD D +SGGQ++R+ V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 314 ALA-----LFMDEISNGLDSSTTFHIVNSLRQ---NIHILNGTAVISLLQPAPETYDLFD 365
ALA L MDE LD T + L++ + G ++ + E + L D
Sbjct: 149 ALAADPPLLLMDEPFGALDPITR----DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLAD 204
Query: 366 DIILLSDGQIVYQG-PCELVLDFFESMGFKCPERKSVADFLQE 407
I ++ +G+IV G P E++ P VA+F+
Sbjct: 205 RIAIMKNGEIVQVGTPDEILRS---------PANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 95/297 (31%)
Query: 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG--QLDS-SLKVSGRVTYNGHDMN 192
+LK +S ++ G + +++GP SGK+TLL L G + DS S+ V G + D+
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 193 E------FVPQRTAAYISQHDVHIGEMTVRE--TLAFSARCQGVGSRYDMLTELARREKE 244
+ V Q+ + H +TV E TLA ++ + K
Sbjct: 74 KLRRKVGMVFQQFNLF--PH------LTVLENVTLA--------------PVKVKKLSKA 111
Query: 245 AGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRL 304
EA L+ +GL AD D +SGGQ++R
Sbjct: 112 ---------------------EAREKALELLEKVGL---AD--KADAYPAQLSGGQQQR- 144
Query: 305 TTGEMMVGPALALFM-------DEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPA 357
V A AL M DE ++ LD +++ ++ G +I +
Sbjct: 145 ------VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIV---- 192
Query: 358 PETYDL-F-----DDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEV 408
T+++ F D +I + G+I+ +GP E +FF++ P+ + FL ++
Sbjct: 193 --THEMGFAREVADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 61/257 (23%), Positives = 93/257 (36%), Gaps = 64/257 (24%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA-- 200
+S ++ G + L+GP +GK+TLL +AG L SG + + G + + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 201 -AYISQHDVHIGEMTVRETLAFS--ARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
AY+SQ M V + L + + L E+A
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-SALNEVAEA---------------- 113
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG--QKKRLTTGEMMVGPAL 315
LGLD D L V +SGG Q+ RL + V P +
Sbjct: 114 --------------------LGLD---DKL--GRSVNQLSGGEWQRVRLAAVVLQVWPDI 148
Query: 316 -----ALFMDEISNGLDSSTTFHIVNSLRQNIHIL--NGTAVISLLQPAPETYDLFDDII 368
L +DE N LD + +L + + L G AV+ T D +
Sbjct: 149 NPAGQLLLLDEPMNSLDVAQ----QAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVW 204
Query: 369 LLSDGQIVYQGPCELVL 385
LL G+++ G + VL
Sbjct: 205 LLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 9/190 (4%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 897 S------GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKM-FIEEIMELVELKPL 949
+ + Q I P V+ + L + + + + E + F+E I E ++L +
Sbjct: 82 AHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGM 139
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009
S + G S ++KR I + + + +DE SGLD A I+ + +
Sbjct: 140 DPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT 199
Query: 1010 TGRTVVCTIH 1019
+ +++ H
Sbjct: 200 SENSIILITH 209
|
Length = 252 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 34/210 (16%)
Query: 823 KEMKLKGVH--EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGN 880
E++ K V +L +S F G + ++G SGAGK+TL+ ++ + G+
Sbjct: 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGS 59
Query: 881 ITISGYPKKQ----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMF 936
I I G K + +I +Q + TV +++ Y L+ VD E
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG--TVKDNIEYGPMLKGEKNVDVE----- 112
Query: 937 IEEIMELVELKPLRQSLVGLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990
S+VGL E LS + +R++IA L NP ++ +DEPTS
Sbjct: 113 ------------YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160
Query: 991 GLDARAAAIVMRTVKNTVET-GRTVVCTIH 1019
LD + I+ + TV+ H
Sbjct: 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 38/184 (20%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISG---YP 887
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 888 KKQE--TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
KK + R G Q P ++YE+++Y LRL+ + ++E +E
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFP-KSIYENVVYG--LRLQGINNRRV----LDEAVE--- 146
Query: 946 LKPLRQSLVGLPGE---------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
+ LR + L E GLS Q++RL IA + P ++ +DEPTS LD +
Sbjct: 147 -RSLRGA--ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203
Query: 997 AAIV 1000
+
Sbjct: 204 TLKI 207
|
Length = 272 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 959 ESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1016
SG LS Q++RL IA + +P +I MDEP S LD A + + ++ E TVV
Sbjct: 176 SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVI 234
Query: 1017 TIH 1019
H
Sbjct: 235 VTH 237
|
Length = 285 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 6e-05
Identities = 67/278 (24%), Positives = 101/278 (36%), Gaps = 58/278 (20%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
++ D+S I G LLGP +GK+T+ L G + G++T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 199 TAA------YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+ Q D E TVRE L R G ++ RE EA I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
L+ L+ AD V +SGG K+RLT ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372
L +DE + GLD I LR + G ++ E L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRS--LLARGKTILLTTHFMEEAERLCDRLCVLES 210
Query: 373 GQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410
G+ + +G ++D E +G C + E+
Sbjct: 211 GRKIAEGRPHALID--EQIG--CNVIEIYGGDPDELRE 244
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 43/248 (17%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG--QLDSSLKVSGRVTYNGHD---MNE 193
+L V+ I +T L+GP SGK+TLL +L +VSG V +G D M+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 194 FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG-VGSRYDMLTELARREKEAGIKPDLF 252
+R + Q I +++ E +A + V S+ EL R + A K L+
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSK----KELQERVRWALEKAQLW 133
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
+V + A G+ +SGGQ++RL +
Sbjct: 134 DEVKDRLDAPAGK------------------------------LSGGQQQRLCIARALAF 163
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372
L DE + LD T I + + + ++ + + + D + L
Sbjct: 164 QPEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYK 220
Query: 373 GQIVYQGP 380
GQIV GP
Sbjct: 221 GQIVEWGP 228
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 48/209 (22%), Positives = 82/209 (39%), Gaps = 52/209 (24%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
L D++ I R+T L+GP GK+TLL L +++G + YNG ++ +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD---- 77
Query: 198 RTAAYISQHDVHIGEM---------TVRETLAFSARCQGVGSRYDMLTELARREKEAGIK 248
+ A + IG + ++ E +A+ R G ++ +
Sbjct: 78 -SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTL-------------- 122
Query: 249 PDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE 308
D ++ +K AA + + L D L +SGGQ++RL
Sbjct: 123 -DTIVEKSLKGAALWDEVKDRLHDSAL-------------------SLSGGQQQRLCIAR 162
Query: 309 MM-VGPALALFMDEISNGLDSSTTFHIVN 336
+ V P + L MDE + LD T I +
Sbjct: 163 TLAVNPEVIL-MDEPCSALDPIATAKIED 190
|
Length = 253 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 44/200 (22%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+ +DV+YS +L+ +S + T ++G+SG+GK+TL +L
Sbjct: 473 DIVINDVSYSYGYGSN------------ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 869 AGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLV---TVYESLLYSAWL 922
G SG I ++G+ K T + Y Q P + ++ E+LL A
Sbjct: 521 VGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE----PYIFSGSILENLLLGA-- 572
Query: 923 RLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP---------GESGLSTEQRKRLTIA 973
+ +EI E+ ++ + +P S +S Q++R+ +A
Sbjct: 573 ---------KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623
Query: 974 VELVANPSIIFMDEPTSGLD 993
L+ + ++ +DE TS LD
Sbjct: 624 RALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA-----A 201
+ G + + GP +GKT+LL LAG +G V + G + QR
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRR---QRDEYHQDLL 77
Query: 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELAR 240
Y+ E+T E L F R G G + LA+
Sbjct: 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 42/195 (21%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDI 905
RPG + ++G +G GK+T + +LAG P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQN-- 151
Query: 906 HSPLVTVYESLLYSAWLR---------------------LRTEVDSETRKMFIEEIMELV 944
Y LY LR L +VD + +E++E +
Sbjct: 152 -------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKF---DEVVERL 201
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
L+ + V S LS + +R+ IA L+ + + F DEP+S LD R R +
Sbjct: 202 GLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256
Query: 1005 KNTVETGRTVVCTIH 1019
+ E G+ V+ H
Sbjct: 257 RELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-05
Identities = 43/187 (22%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP-----KKQET 892
++ VS + R G + + G+ GAG+T L+ L G G + GN+ I+G P Q
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAI 334
Query: 893 FTRISGYCEQNDIHS--PLVTVYESLLYSAWLRL--RTEVDSETRKMFIEEIMELVELKP 948
I+ E H P++ V +++ S + +D+ I ++ +++K
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 949 LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008
L LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 395 ASPFL----PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA 450
Query: 1009 ETGRTVV 1015
+ G ++
Sbjct: 451 QEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
IL ++S ++ G L+ GP GK+TLL +A + + SG + + G D++ P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 198 R---TAAYISQHDVHIGEMTVRETLAF 221
+Y +Q G+ TV + L F
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIF 103
|
Length = 225 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-05
Identities = 62/270 (22%), Positives = 103/270 (38%), Gaps = 69/270 (25%)
Query: 126 SIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185
+I T + L++V+ +KPG+M + GP SGK+TLL + D S G +
Sbjct: 317 NIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIR 373
Query: 186 YNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEA 245
+ HD+ + ++ L R
Sbjct: 374 F-------------------HDIPLTKLQ--------------------LDSWRSRLAVV 394
Query: 246 GIKPDLFIDVFM------KAAATEGQ--EANVLTDYYLKVLGLDVCADTLVGDEMVRGI- 296
P LF D + AT+ + L + +L L DT VG+ RG+
Sbjct: 395 SQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGE---RGVM 451
Query: 297 -SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI---- 351
SGGQK+R++ ++ A L +D+ + +D T I+++LRQ T +I
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHR 509
Query: 352 -SLLQPAPETYDLFDDIILLSDGQIVYQGP 380
S L A +I+++ G I +G
Sbjct: 510 LSALTEA-------SEILVMQHGHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 32/162 (19%), Positives = 50/162 (30%), Gaps = 50/162 (30%)
Query: 164 TTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA----AYISQHDVHIGEMTVRETL 219
+TLL + G L SG + +G D ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG 279
F + + A E L+ +G
Sbjct: 58 FFG-----------LRDKEADARAEE----------------------------ALERVG 78
Query: 280 LDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDE 321
L D + SGGQK+R+ ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYISGNITISGYPKKQ 890
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 891 ETFTRIS-GYCEQNDIHSPLV---TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
T R G Q H L+ TV+ ++ L E+D+ + ++ EL+ L
Sbjct: 77 LTKARRQIGMIFQ---HFNLLSSRTVFGNV------ALPLELDNTPKDEIKRKVTELLAL 127
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
L P S LS Q++R+ IA L +NP ++ DE TS LD ++ +K
Sbjct: 128 VGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK- 184
Query: 1007 TVETGRTVVCTI 1018
E R + TI
Sbjct: 185 --EINRRLGLTI 194
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-05
Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 38/225 (16%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
++ F +T+ + + GV + VS + G A++G +GAGKTTL+++L
Sbjct: 334 AVEFRHITF--EFANSSQ--GVFD--------VSFEAKAGQTVAIVGPTGAGKTTLINLL 381
Query: 869 AGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESL-LYSAWLRLRTE 927
++ G I I G T TR + + TV++ L++ +R
Sbjct: 382 --QRVYDPTVGQILIDGI--DINTVTR-------ESLRKSIATVFQDAGLFNRSIRENIR 430
Query: 928 VDSETRKMFIEEIMELVE--------LKPLRQSLVGLPGESG--LSTEQRKRLTIAVELV 977
+ E EE+ E + LK L GE G LS +R+RL IA ++
Sbjct: 431 LGREGATD--EEVYEAAKAAAAHDFILKRSNGYDT-LVGERGNRLSGGERQRLAIARAIL 487
Query: 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022
N I+ +DE TS LD A V + + + RT H+ S
Sbjct: 488 KNAPILVLDEATSALDVETEARVKNAI-DALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 9e-05
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 41/248 (16%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
+L +++ IKPG ++GP SGK+TL K+ R+ + PQ
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-----------KLLQRL---------YTPQH 511
Query: 199 TAAYISQHDVHIGE-MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
+ D+ I + +R R GV + ++L + R+ A P + +
Sbjct: 512 GQVLVDGVDLAIADPAWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVI 564
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALAL 317
AA G + L +T VG++ +SGGQ++R+ +VG L
Sbjct: 565 HAAKLAGAHDFIS--------ELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRIL 615
Query: 318 FMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVY 377
DE ++ LD + I+ ++R+ I G VI + T D II+L GQI
Sbjct: 616 IFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIAE 671
Query: 378 QGPCELVL 385
G E +L
Sbjct: 672 SGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 57/250 (22%), Positives = 105/250 (42%), Gaps = 49/250 (19%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL---DSSLKVSGRVTYNGHD---MN 192
ILKD++ I + ++GP SGK+TLL L + DS +KV G+V Y G D ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 193 EFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
++ + Q +++ + +A+ + G+ + E+ + +E K L+
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEK----REIKKIVEECLRKVGLW 140
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
+V+ + + Q +SGGQ++RLT +
Sbjct: 141 KEVYDRLNSPASQ------------------------------LSGGQQQRLTIARALAL 170
Query: 313 PALALFMDEISNGLDSSTTFHIVNS--LRQNIHILNGTAVISLLQPAP-ETYDLFDDIIL 369
L MDE ++ +D IVNS + + I L I ++ P + + D +
Sbjct: 171 KPKVLLMDEPTSMID------IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAF 224
Query: 370 LSDGQIVYQG 379
L +G++V G
Sbjct: 225 LYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 34/221 (15%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK--KQ 890
D +L GVS +TA++G SG GK+T + L + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 891 ETFTR---ISGYCEQNDIHSPL-----VTVYESLLYSAWL---RLRTEVDSETRKMFIEE 939
+ R ++ Q + P ++VY+++ Y + R + E+D +E
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 940 IMELVEL-----KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
++ +L + +S + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGG------QQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 995 RAAAIVMRTVKN-TVETGRTVVCTIHQ-PSIDIFEAFDELF 1033
A+ V +++ + + T+V H + F F
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 9e-05
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 37/217 (17%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGNITISGYPKKQETFTR 895
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 896 ISGYC---EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEI---------MEL 943
+ QN +H T+ ++ Y+ T + E+I M+
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR-----------TEQYSREQIEEAARMAYAMDF 462
Query: 944 VELKPLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
+ + L + GE+G LS QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 463 IN--KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ + ++ RT + H+ S E DE+ +++ G
Sbjct: 521 AAL-DELQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
+L++VS I+PG ++GP SGK+TL + G L SGRV +G D++++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDP-- 71
Query: 199 TAAYISQHDVHIG 211
++ H+G
Sbjct: 72 -----NELGDHVG 79
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-04
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 44/183 (24%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ--RTAAYIS 204
++PG LLG +GKTT L G D+++ SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEG 264
Q D +T RE L AR +GV +
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPA---------------------------------- 2044
Query: 265 QEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISN 324
+E + ++ ++ LGL + AD L G SGG K++L+T ++G + +DE +
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 325 GLD 327
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 66/253 (26%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
L+DVS I G L GP +GK+TLL + G+ + G++ NGHD++ + R
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSR-LKGR 72
Query: 199 TAAYISQHDVHIG----------EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIK 248
++ + IG + TV E +A R G R E+ RR E
Sbjct: 73 EIPFLRR---QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV--- 121
Query: 249 PDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE 308
L ++GL A L +SGG+++R+
Sbjct: 122 --------------------------LDLVGLKHKARALPSQ-----LSGGEQQRVAIAR 150
Query: 309 MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD-- 366
+V L DE + LD ++ I+ L + I+ L GT V+ A +L +
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINRL-GTTVLM----ATHDLELVNRMR 204
Query: 367 --IILLSDGQIVY 377
++ L DG++V
Sbjct: 205 HRVLALEDGRLVR 217
|
Length = 223 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 82/273 (30%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187
+ K + + LK +S I+ G + +GP +GKTT L L+G L + SG V
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVA 81
Query: 188 GHDMNEFVP-QRTAAYISQHDVHIGEMT-------VRETLAFSARCQGV-----GSRYDM 234
G VP +R ++ + V G+ T V ++ A + R D
Sbjct: 82 G-----LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE 136
Query: 235 LTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294
L+EL LD + L D VR
Sbjct: 137 LSEL-----------------------------------------LD-LEELL--DTPVR 152
Query: 295 GISGGQKKRLTTGEMMVGPAL-----ALFMDEISNGLDSSTTFHIVNSLRQNIHILN--- 346
+S GQ+ R + AL LF+DE + GLD ++R + N
Sbjct: 153 QLSLGQRMR-----AEIAAALLHEPEILFLDEPTIGLDVVAQ----ENIRNFLKEYNRER 203
Query: 347 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
GT V+ + L ++++ G+++Y G
Sbjct: 204 GTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 57/255 (22%), Positives = 89/255 (34%), Gaps = 53/255 (20%)
Query: 127 IHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY 186
L+ + T + ++S + + LLGP +GK+TLL + G L SG + +
Sbjct: 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIF 59
Query: 187 NGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAG 246
+GH + + I ++ +T RE L G+
Sbjct: 60 DGHPWTRKDLHKIGSLIESPPLY-ENLTARENLKVHTTLLGL------------------ 100
Query: 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTT 306
PD ID L ++ L S G K+RL
Sbjct: 101 --PDSRIDEV------------------LNIVDLTNTGKKKAKQ-----FSLGMKQRLGI 135
Query: 307 GEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHIL--NGTAVISLLQPAPETYDLF 364
++ L +DE +NGLD + LR+ I G VI E L
Sbjct: 136 AIALLNHPKLLILDEPTNGLDPIG----IQELRELIRSFPEQGITVILSSHILSEVQQLA 191
Query: 365 DDIILLSDGQIVYQG 379
D I ++S+G + YQG
Sbjct: 192 DHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193
+L +VS I G M ++G SGK+TLL L G LD+ SG V +NG M++
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTP--TSGDVIFNGQPMSK 75
|
Length = 233 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG-----YPKKQETFTRISGYCEQ 902
G TA++G +G GK+TL+ L+ T G++ + G Y K E RI G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASK-EVARRI-GLLAQ 88
Query: 903 NDIHSPLVTVYESL---------LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
N +TV E + L++ W + + ++ T+ M I L QS+
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQSV 141
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 142 ------DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 22/154 (14%)
Query: 855 GVSGAGKTTLMDVLAGRK--TGG--YISGNITISGYPKKQETFTRISGYCEQNDIHSPLV 910
G SG GK+TL+ ++AG + T G +I G ++ P + R G Q+ P +
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE----RGVGMVFQSYALYPHL 90
Query: 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL--RQSLVGLPGESGLSTEQRK 968
+V E++ S L+L E + ++ E+++L L R+ P LS QR+
Sbjct: 91 SVAENM--SFGLKL-AGAKKEEINQRVNQVAEVLQLAHLLDRK-----PKA--LSGGQRQ 140
Query: 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1002
R+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 50/277 (18%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE------ 193
L +V+ I+ G L+G SGK+TL+ L G L + SG++ +G D+ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 194 FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
+ ++ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGP 313
+ ++GLD + D+ +SGGQK+R+ ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 314 ALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373
L +DE + GLD I+N + + +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKI-KELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 374 QIVYQG-PCELV--LDFFESMGFKCPERKSVADFLQE 407
+ QG P E+ ++ ES+G P+ + L++
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQVTYLVRKLRK 258
|
Length = 287 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-SGNITISGYPKKQETFTRI 896
+ G+ G L+G SG GK+TL+ ++AG + I SG I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 897 SGYCE----------QNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
E QN P ++V E++ Y L++R + + + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYG--LKIR-GMPKAEIEERVAEAARILEL 124
Query: 947 KPL-----RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 999
+PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 1000 VMR 1002
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 31/241 (12%)
Query: 810 LTFDDV--TYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 867
+TF V Y P E + L + V+ + G A++G +G+GK+TL+
Sbjct: 3 ITFQKVEHRYQYKTPFE---------RRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQH 52
Query: 868 LAG--RKTGGYIS-GNITISGY--PKKQETFTRISGYCEQNDIHSPL-VTVYESLLYSAW 921
L G + T G ++ G I+ KK + + G Q H TV + + +
Sbjct: 53 LNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP- 111
Query: 922 LRLRTEVDSETRKMFIEEIMELVELKP--LRQSLVGLPGESGLSTEQRKRLTIAVELVAN 979
+ V E K E++ELV L L +S P E LS Q +R+ IA L
Sbjct: 112 --MNFGVSEEDAKQKAREMIELVGLPEELLARS----PFE--LSGGQMRRVAIAGVLAME 163
Query: 980 PSIIFMDEPTSGLDARAAAIVMRTVKNT-VETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
P ++ +DEPT+GLD + +M E G T V H D D++ +M +G
Sbjct: 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKG 222
Query: 1039 G 1039
Sbjct: 223 T 223
|
Length = 290 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 56/207 (27%), Positives = 78/207 (37%), Gaps = 52/207 (25%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
++ +S + G LLGP +GK+T+ + G +G++T G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLG----VPVPAR 108
Query: 199 TAA------YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+ Q D E TVRE L V RY ++ RE EA I P L
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLL-------VFGRY---FGMSTREIEAVI-PSL- 156
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
L+ L+ AD V D +SGG K+RLT ++
Sbjct: 157 ----------------------LEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLR 339
L +DE + GLD I LR
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERLR 216
|
Length = 340 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
K +LK VS I G + ++G SGK+TLL L G LD+ SG V +NG +
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSL 69
Query: 192 N 192
+
Sbjct: 70 S 70
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 118 NIIEAFFNSIHILTTK----KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173
NI+E +H L + L+IL V ++K G L+G SGK+TLL LAG
Sbjct: 5 NIVE-----VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59
Query: 174 LDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
D S SG V+ G +++ + A ++H
Sbjct: 60 DDGS---SGEVSLVGQPLHQMDEEARAKLRAKH 89
|
Length = 228 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 75/259 (28%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF---- 194
IL +S I G+ ++G +GK+T+L L D + SG +T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 195 -------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
VPQ T + T+ + + R + E A
Sbjct: 335 LRRAIGIVPQDTVLFND---------TIAYNIKY-GR-----------PDATAEEVGAAA 373
Query: 248 KPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG--ISGGQKKRLT 305
+ AA L + Y DT VG+ RG +SGG+K+R+
Sbjct: 374 E-----------AAQIHDFIQSLPEGY----------DTGVGE---RGLKLSGGEKQRVA 409
Query: 306 TGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI-----SLLQPAPET 360
++ L +DE ++ LD+ T I +LR+ T ++ S + A
Sbjct: 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIIDA--- 464
Query: 361 YDLFDDIILLSDGQIVYQG 379
D+II+L +G+IV +G
Sbjct: 465 ----DEIIVLDNGRIVERG 479
|
Length = 497 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 290 DEMVRGISGGQKKRLTTGEMMV-GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGT 348
D++ R SGG ++RL +V P L +FMDE + GLD S +++ LR + L
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLVRELGLA 204
Query: 349 AVISLLQPAPETYDLF------DDIILLSDGQIVYQGPCELVLD 386
VI T+DL D ++++ GQ+V G + VLD
Sbjct: 205 VVIV-------THDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
LK V+ I+ G L+G GK+TLL ++G + SG V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 200 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
+ Q+ + +TVRE +A + +L +L++ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFM 319
+ + ++ ++GL AD G +SGG K+R+ + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 320 DEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373
DE LD+ T ++ L Q I + V+ + E L D +++L++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 43/258 (16%)
Query: 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN-GHDMNEF 194
L L +VS I G ++G SGKTT + L L L +G + + + N+
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFKDEKNKK 75
Query: 195 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREK-EAGIKPDL-F 252
+ + + I + ++ + + + R ++ + A + E I+ D+ F
Sbjct: 76 KTKEKEKVLE--KLVIQKTRFKKI----KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIF 129
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR---GISGGQKKRLT-TGE 308
V M +EA Y++++GLD + R +SGGQK+R+ G
Sbjct: 130 GPVSM---GVSKEEAKKRAAKYIELVGLDE-------SYLQRSPFELSGGQKRRVALAGI 179
Query: 309 MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI- 367
+ + P L DE + GLD I+ N++ G +I + T+DL D++
Sbjct: 180 LAMEPDF-LVFDEPTAGLDPQGVKEILEIF-DNLN-KQGKTIILV------THDL-DNVL 229
Query: 368 ------ILLSDGQIVYQG 379
I DG+I+ G
Sbjct: 230 EWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1021
LS Q++R+ IA L NPS+I +DE TS LD A ++ V+ + +I
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1022 SIDIFEAF--DELFLMKRG 1038
D+ EA D + +M +G
Sbjct: 202 --DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 52/222 (23%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSGRVTYNGHDMNE---- 193
+K+V I G++T L+GP GK+T+L +L L + GRV ++G D+ +
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 194 --FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
V +R Q + ++ E +AF AR G D L E + R
Sbjct: 89 PVEVRRRIGMVFQQPNPF--PKSIYENIAFGARINGYTGDMDELVERSLR---------- 136
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311
KAA D C D L +E +SGGQ++RL +
Sbjct: 137 ------KAAV------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIA 170
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHIL--NGTAVI 351
+ MDE + LD +T I + +H L N T VI
Sbjct: 171 IEPEVILMDEPCSALDPISTLKI----EETMHELKKNFTIVI 208
|
Length = 269 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 821 MPKEMKLKGVH-EDKLVLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 873
MP++++L+ + + L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 874 GGYISGNITISGYPKKQETFT-RISGYCEQN--DIHSPLVTVYESLLYSAWLRLRTEVDS 930
+G + + G P R QN +PL T++ + + D+
Sbjct: 61 ----AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDA 116
Query: 931 ETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990
+E V L+ + L P E +S +R+ IA+ L+ I DEPT+
Sbjct: 117 TLT-----AALEAVGLENAARVLKLYPFE--MSGGMLQRMMIALALLCEAPFIIADEPTT 169
Query: 991 GLDARAAAIVMRTVKNTVET 1010
LD A A ++ +++ V+
Sbjct: 170 DLDVVAQARILDLLESIVQK 189
|
Length = 254 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 44/210 (20%), Positives = 83/210 (39%), Gaps = 28/210 (13%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L +S G ++G +GAGK+TL+ ++AG + T SG + ++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL--KPLRQSL 953
++ E P +T E++ + T + + + I E EL + +P++
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVK--- 146
Query: 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
S+ RL +V P I+ +DE + DA + + VE +T
Sbjct: 147 -------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT 199
Query: 1014 VVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043
+V H I + D ++ G +
Sbjct: 200 IVLVSHDLGA-IKQYCDRAIWLEHGQIRME 228
|
Length = 249 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 69/256 (26%), Positives = 107/256 (41%), Gaps = 56/256 (21%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
ILK +S ++ G ++GP SGK+TL L G SG V +G D+ ++ +
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDREQ 407
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
R Y+ Q DV + + T+ E +AR +EA P+ I
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAEN-------------------IARFGEEA--DPEKVI-- 443
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG-PA 314
EA L + +L L DT +G+ +SGGQ++R+ + G P
Sbjct: 444 ----------EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPF 492
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI-----SLLQPAPETYDLFDDIIL 369
L + +DE ++ LDS + ++ GT V+ S L D I++
Sbjct: 493 L-VVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILV 543
Query: 370 LSDGQIVYQGPCELVL 385
L DG+I GP E VL
Sbjct: 544 LQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 44/192 (22%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
L+D++ ++ G + ++LGP GKTTLL +AG + G +T +G + P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
+ Q++ + V++ +AF + GV +R + A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEK--------MQRLEIA------------- 109
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
+ LK +GL+ + +SGGQ++R+ + L
Sbjct: 110 ------HQM-------LKKVGLEG-----AEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 319 MDEISNGLDSST 330
+DE LD+ T
Sbjct: 152 LDEPFGALDAFT 163
|
Length = 255 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 59/260 (22%), Positives = 89/260 (34%), Gaps = 64/260 (24%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T L +SG ++ G + L+GP +GK+TLL +AG SG + + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68
Query: 198 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
A AY+SQ M V L +PD
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH-------------------------QPD---- 99
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG--QKKRLTTGEMMVG 312
K + L LD D L +SGG Q+ RL + +
Sbjct: 100 ---KTRTEL-------LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 313 PAL-----ALFMDEISNGLDSSTTFHIVNSLRQNIHIL--NGTAVISLLQPAPETYDLFD 365
P L +DE N LD + ++L + + L G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQ----SALDRLLSALCQQGLAIVMSSHDLNHTLRHAH 200
Query: 366 DIILLSDGQIVYQGPCELVL 385
LL G+++ G E VL
Sbjct: 201 RAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 57/249 (22%)
Query: 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTL--LLALAGQLDSSLKVSGRVTYNGHDMNE 193
+L+DVS + PG +T L+GP SGK+T+ LL Q G+V +G +++
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ-----GGQVLLDGKPISQ 80
Query: 194 F---VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS-RYDMLTELARREKEAGIKP 249
+ + + Q V ++++ +A+ G+ S ++ + E A+
Sbjct: 81 YEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQ-----KAHA 129
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
FI TE E +SGGQK+R+
Sbjct: 130 HSFISELASGYDTEVGEKGSQ-------------------------LSGGQKQRVAIARA 164
Query: 310 MVGPALALFMDEISNGLDSSTTFHIVNSLR---QNIHILNGTAVISLLQPAPETYDLFDD 366
++ L +DE ++ LD+ + + +L + +L +S ++ A D
Sbjct: 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERA-------DQ 217
Query: 367 IILLSDGQI 375
I++L G+I
Sbjct: 218 ILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 66/246 (26%), Positives = 94/246 (38%), Gaps = 71/246 (28%)
Query: 149 PGRMTLLLGPPSSGKTTLL---LALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQ 205
G + LLGP +GKTTLL L L ++KV+G G +VPQR
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 206 H----DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAA 261
H D I +V T+ S R +G RR A F V
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVAD-----FAAV------ 94
Query: 262 TEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA----- 316
L+ +GL AD VG+ +SGGQ++R+ +V ALA
Sbjct: 95 ----------RDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 317 LFMDEISNGLDSSTT---FHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373
L +DE GLD T + L GTA++ + D ++LL +G
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIELAG-----AGTAILMTTHDLAQAMATCDRVVLL-NG 188
Query: 374 QIVYQG 379
+++ G
Sbjct: 189 RVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
L D++ I ++T L+GP GK+T L L L S++K+ G V +G +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
I DV + E+ R + F S YD +A + GIK
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYD---NVAYGPRIHGIK--------- 115
Query: 258 KAAATEGQEANVLTDYYLKVLGL-DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
+ +E + + ++ LK L D D L + +SGGQ++RL +
Sbjct: 116 -----DKKELDKIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDV 168
Query: 317 LFMDEISNGLDSSTTFHI 334
+ MDE ++ LD +T I
Sbjct: 169 ILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 53/255 (20%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF---V 195
ILKD+S + G + ++GP +GK+TL+ + +D + G + +G D+
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 196 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
+R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
E NV +YYL ++GL+ + D V+ +SGG+ +R++ +
Sbjct: 106 ----------EKNVDVEYYLSIVGLN--KEYATRD--VKNLSGGEAQRVSIARTLANNPE 151
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
L +DE ++ LD ++T I+ L + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 376 VYQGPCELVLDFFES 390
V DFF +
Sbjct: 211 VEYAK---TYDFFTN 222
|
Length = 241 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 40/167 (23%)
Query: 848 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISG---YPKK---QETFT 894
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 895 RISGYCEQNDIHSPL-VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
RI +Q + P ++YE++ + A R+ + ++ ELVE + LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA--RING---------YTGDMDELVE-RSLRKAA 139
Query: 954 V-----GLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
V ESG LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 60/188 (31%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
+ G+ F +TAL+G SG+GK+T + L R N TI R++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL-NRM-------NDTIDI--------ARVT 79
Query: 898 G--YCEQNDIHSPLVTVYESLLYSAWLRLRT----------------------EVDSETR 933
G DI+ + VYE +R E
Sbjct: 80 GQILYRGIDINRKEINVYE-------MRKHIGMVFQRPNPFAKSIYENITFALERAGVKD 132
Query: 934 KMFIEEIMELVELKPLRQSLV------GLPGESG--LSTEQRKRLTIAVELVANPSIIFM 985
K ++EI+E L+Q+ + L +S LS Q++RL IA + P I+ M
Sbjct: 133 KKVLDEIVE----TSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLM 187
Query: 986 DEPTSGLD 993
DEP S LD
Sbjct: 188 DEPASALD 195
|
Length = 267 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 31/172 (18%)
Query: 842 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYISGNITISGYPKKQETFTRISG 898
G G V+ + G +G GKTT +LAG G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 899 YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG 958
TV + LL S L + + EI++ ++L+ L V
Sbjct: 412 --------DYDGTVED-LLRSITDDLGSS-------YYKSEIIKPLQLERLLDKNV---- 451
Query: 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
LS + +R+ IA L + + +DEP++ LD V + ++ E
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE 502
|
Length = 590 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 32/230 (13%)
Query: 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFTRISGY 899
VS G + AL+G SG GK+TL+ +LAG + +G I + G + R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPINM 95
Query: 900 CEQNDIHSPLVTVYESLLYS-AWLRL-RTEVDSETRKMF-IEEIMELVELKPLRQSLVGL 956
Q+ P +TV +++ + +L + E+ S +M + + E + KP +
Sbjct: 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ------ 149
Query: 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVV 1015
LS QR+R+ +A L P ++ +DEP LD + + V + +E G T V
Sbjct: 150 -----LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204
Query: 1016 CTIHQPSIDIFEAFD---ELFLMKRGG-------QEIYVGPLGSNSSDLI 1055
H D EA + +M RG +EIY P S++ I
Sbjct: 205 MVTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFI 250
|
Length = 377 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 24/230 (10%)
Query: 816 TYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RK 872
TY+ P E K LN S F+ +T ++G +G+GK+T++ + G +
Sbjct: 15 TYAKKTPFEFKA----------LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 873 TGGYISGNITISGYPKKQETFTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD 929
TG I G+ I KK + R+ G Q + E + + L
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 930 SETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 989
+K + E+++LV+L + P E LS Q++R+ +A + + + + +DEPT
Sbjct: 125 EAYKK--VPELLKLVQLP--EDYVKRSPFE--LSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 990 SGLDARAAAIVMRT-VKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
GLD + + + E + ++ H + DE+ +M G
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR 895
+L G+ G + AL+G +GAGK+TLM ++AG SG + I G P R
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP-----CAR 77
Query: 896 IS-GYCEQNDIH----SPLV----TVYESLLYSAWLRL-RTEVDSETRKMFIEEIMELVE 945
++ Q I+ PL+ +V E++L+ L + + + K + + +
Sbjct: 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQKMKQLLAALG--CQ 131
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
L + L R+ + I L+ + I+ +DEPT+ L
Sbjct: 132 LDLDSSA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 36/205 (17%)
Query: 832 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYISGNITISGYPKKQ 890
+ + VS R G + + GV+G G++ L++ ++G RK SG I ++G
Sbjct: 268 RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLG 324
Query: 891 ETFTRIS-----GYCEQNDIHSPLV---TVYESLL--------YSAWLRLRTEVDSETRK 934
R Y ++ LV ++ E+L+ +S L RK
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDR---RAIRK 381
Query: 935 MFIEEIMELVELKPLRQSLVGLPGES----GLSTEQRKRLTIAVELVANPSIIFMDEPTS 990
F E++E +++ P LS +++L +A EL P ++ +PT
Sbjct: 382 -FARELIEEFDVRA--------PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR 432
Query: 991 GLDARAAAIVMRTVKNTVETGRTVV 1015
GLD A + + + G+ V+
Sbjct: 433 GLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 47/253 (18%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T+L +S G++T L+G SGK+TLL L S G + + + + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 198 ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
G + + ++GL A LV +SGG+++R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 315 LALFMDEISNGLDSSTTFHIVN--SLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372
L +DE ++ LD + H V+ +L + G VI++L D ++ L
Sbjct: 167 RCLLLDEPTSALDIA---HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223
Query: 373 GQIVYQG-PCELV 384
G+++ QG P EL+
Sbjct: 224 GEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 59/264 (22%), Positives = 102/264 (38%), Gaps = 55/264 (20%)
Query: 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187
L K+ +L +VS I+ G LLG GK+TL L G L+ + G V++
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQ--GTVSFR 71
Query: 188 GHDMNEFVPQRTAAYISQHDVHI----------GEMTVRETLAFSARCQGVGSRYDMLTE 237
G D+ + ++ A+ + DV + MTVR+ + R L E
Sbjct: 72 GQDLYQLDRKQRRAF--RRDVQLVFQDSPSAVNPRMTVRQIIGEPLR------HLTSLDE 123
Query: 238 LARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297
++ + A + L ++GL + D++ R +S
Sbjct: 124 SEQKARIAEL---------------------------LDMVGL----RSEDADKLPRQLS 152
Query: 298 GGQKKRLTTGE-MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356
GGQ +R+ + V P L + +DE + LD I+ LR+ + GTA + +
Sbjct: 153 GGQLQRINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHD 210
Query: 357 APETYDLFDDIILLSDGQIVYQGP 380
+ ++ GQIV +
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 27/235 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 896 ISGYCEQNDIHSPLV--TVYESLLYSAW------LRLRTEVDSETRKMFIEEIMELVELK 947
+ G QN + V TV E L + + +R VD L E+
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD-----------RALAEIG 125
Query: 948 PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007
L + P LS Q + + +A L P + DE TS LD + V+ +K
Sbjct: 126 -LEKYRHRSP--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL 182
Query: 1008 VETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMP 1062
E G+T+V H +++ D + +M RG + P S + L L P
Sbjct: 183 HEKGKTIVYITH--NLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTP 235
|
Length = 274 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 51 QERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVE--VRYEHLNIEAEAFLASKA 108
+E +R ID+ V + +L RYR + K+E ++++++ + L K
Sbjct: 322 EEAKRYIDRFVGEDPMAYPHLLLAPRYR------MVEKLEGPIKFKNVTKTFASELDIKG 375
Query: 109 LPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLL 168
LP + F +I+E+F + + +L++++ IKPG + ++G +GKTTLL
Sbjct: 376 LP---NEFQDILESF-----GVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLR 427
Query: 169 ALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYI--SQHDVHIGEMTVRETLA 220
+ G K G Y VP+ T + + +++ GE+T+ E L
Sbjct: 428 MILGA----QKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLR 477
|
Length = 593 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 19/161 (11%)
Query: 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYC 900
+S R G A++G +G+GK+TL +LAG SG + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 901 EQNDIHSPLVTVYESL--------LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS 952
Q I SL + LRL T+++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 YY----PHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 66/285 (23%), Positives = 110/285 (38%), Gaps = 76/285 (26%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF----- 194
+ D S ++ G + +++G SGK+TL+ L ++ + G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 195 --VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+ ++ + + Q + TV E +AF QGV A RE+ A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP--------KAEREERA------- 145
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
++A G L Y D+ +SGG ++R VG
Sbjct: 146 ----LEALELVG-----LEGY---------------ADKYPNELSGGMQQR-------VG 174
Query: 313 PALAL-------FMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV-ISLLQPAPETYDLF 364
A AL MDE + LD + + L + L T V I+ E +
Sbjct: 175 LARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT--HDLDEALRIG 232
Query: 365 DDIILLSDGQIVYQG-PCELVLDFFESMGFKCPERKSVADFLQEV 408
D I ++ DG+IV G P E++L+ P V DF++ V
Sbjct: 233 DRIAIMKDGEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175
PG + L++GPP SGKTTL ALA +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG 27
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 44/248 (17%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG---------YPK 888
+ G+S +TA++G SG GK+T + L + G + + G Y
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDP 79
Query: 889 KQET--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIME-LVE 945
+ R G Q P+ ++YE++ Y + ++ + ++EI+E ++
Sbjct: 80 RININRLRRQIGMVFQRPNPFPM-SIYENVAYG------VRISAKLPQADLDEIVESALK 132
Query: 946 LKPLRQSLVGLPGES--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
L Q + +S GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 133 GAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL 192
Query: 1004 VKNTVETGRTVVCTIHQ----PSIDIFEAF---DELFLMKRGGQ--------EIYVGPLG 1048
+ +++ + T+ H + F AF DE R GQ +I+ PL
Sbjct: 193 I-HSLRSELTIAIVTHNMQQATRVSDFTAFFSTDE----SRIGQMVEFGVTTQIFSNPLD 247
Query: 1049 SNSSDLIS 1056
S + D +S
Sbjct: 248 SRTRDYVS 255
|
Length = 259 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 6e-04
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 28/116 (24%)
Query: 275 LKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA-----LFMDEISNGLDSS 329
L++LGL AD + +SGG+++R +++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQR-----VLLARALAQEPPILLLDEPTSHLDIA 131
Query: 330 TTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 379
++ LR+ T V+ L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQ 1020
LS +++R+ +A +L P + DEPT LD + A +V ++ V +G ++V T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 1021 PSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIK 1080
P + I + D+ ++ G+ G P V +FM+ +S VEK
Sbjct: 229 PEV-IEDLSDKAIWLEN-GEIKEEGT---------------PDEVVAVFMEGVSEVEKEC 271
Query: 1081 D 1081
+
Sbjct: 272 E 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISL 353
R +SGG+K+R+ + DE + LD T + N+L + + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 354 LQPAPETY-DLFDDIILLSDGQIVYQG-PCELVLDFFESMGFKCPERKSVADFLQEVTSR 411
PE DL D I L +G+I +G P E+V F E G E++ + + +
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKV 282
Query: 412 KDQRQYWV 419
++ + ++
Sbjct: 283 RNVSKRYI 290
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 26/203 (12%)
Query: 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG--------- 885
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 886 ----YPKKQETFTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIE 938
P ++ ++ G Q+ P TV +++ A + + +E K
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT-EAPVLVLGMARAEAEK---- 125
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 126 RAMELLDMVGLADKADHMPAQ--LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 999 IVMRTVKN-TVETGRTVVCTIHQ 1020
V+ ++ E T++ H+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 35/206 (16%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSGRVTYNGHDMNEFVP 196
IL+ VS I ++T ++GP GK+T L L +L+S ++V GRV + +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN------ 75
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
I + V++ + + ++ S YD +A K G +P L ID
Sbjct: 76 ------IYERRVNLNRLRRQVSMVHPKPNLFPMSVYD---NVAYGVKIVGWRPKLEIDDI 126
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
+++A + + + K LD +SGGQ++RL +
Sbjct: 127 VESALKDADLWDEIKHKIHKS-ALD--------------LSGGQQQRLCIARALAVKPKV 171
Query: 317 LFMDEISNGLDSSTTF---HIVNSLR 339
L MDE GLD + ++ SLR
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLR 197
|
Length = 261 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 6e-04
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 850 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YISGNITISGYPKKQETFTRISGYC 900
+TA +G SG GK+T + D++ G G Y G T S E TRI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 901 EQNDIHSPL-VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959
++ +P +++++++ Y R D + + +E+ ++ L + + G
Sbjct: 170 QKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGN 224
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 225 A-LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 55/240 (22%), Positives = 91/240 (37%), Gaps = 52/240 (21%)
Query: 153 TLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE-----FVP--QRTAAYISQ 205
T + G SGKTTL+ +AG G + NG + + F+P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQ 265
++VR L RY M +R
Sbjct: 83 EARLFPHLSVRGNL-----------RYGM-----KR--------------------ARPS 106
Query: 266 EANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG 325
E + + +++LG+ L G +SGG+K+R+ G ++ L MDE
Sbjct: 107 ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
Query: 326 LDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVL 385
LD + I+ L + +H G ++ + E L D +++L DG++ GP V
Sbjct: 162 LDDPRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 48/284 (16%)
Query: 129 ILTTKKKHLT-----ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS--SLKVS 181
I++ K HL+ L +S + +T L+GP GK+T L L D ++K++
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 182 GRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARR 241
G + + G ++ Y S+ D + E+ + F S YD +A
Sbjct: 64 GEIKFEGQNI----------YGSKMD--LVELRKEVGMVFQQPTPFPFSVYD---NVAYG 108
Query: 242 EKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQK 301
K AG+K ID ++ + ++A + + D L D + SGGQ+
Sbjct: 109 LKIAGVKDKELIDQRVEESL---KQAAIWKE----------TKDNL--DRNAQAFSGGQQ 153
Query: 302 KRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETY 361
+R+ + + +DE ++ LD ++ I +L + H V LQ A
Sbjct: 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR-- 211
Query: 362 DLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405
+ D L +G ++ GP E + F P+++ +D+L
Sbjct: 212 -ISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS 907
G LT ++G G GK++L+ + G + G + S + + +F + +S
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEA----TRSRNRYS 80
Query: 908 PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GES 960
+ L +A + S K + + + L+P + LP GE
Sbjct: 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQP---DIDLLPFGDQTEIGER 137
Query: 961 G--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VKNTVETGRTVVC 1016
G LS QR+R+ +A L N +I+F+D+P S LD + +M+ +K + RT+V
Sbjct: 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVL 197
Query: 1017 TIHQ 1020
H+
Sbjct: 198 VTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 36/170 (21%)
Query: 850 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----SGNITISGYPKKQETFTRIS 897
+TAL+G SG GK+T + D+ G G I + NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
++ + +++E++ Y LR+R R+ +EE +E LR + L
Sbjct: 103 MVFQKPNPFPK--SIFENVAYG--LRIR----GVKRRSILEERVE----NALRNA--ALW 148
Query: 958 GES---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
E LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 149 DEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 44/231 (19%)
Query: 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDV 208
G +T ++GP SGK+TLL +AG SGRV NG D+ P R + + Q +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEAN 268
+TV + + G+ + E R+ + + K E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 269 VLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDS 328
+SGG+++R+ ++V L +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 329 STTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379
+ + L ++H V+ + + L ++ L +G+I QG
Sbjct: 162 ALR-AEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-04
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 56/227 (24%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L V+ +PG + + G +G+GK+TL+ ++ Q F
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI---------------------QRHFDVSE 369
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFI----------------EEIM 941
G +DI L +W R R V S+T +F +EI
Sbjct: 370 GDIRFHDIPLT------KLQLDSW-RSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIE 422
Query: 942 ELVELKPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
+ L + ++ LP GE G LS Q++R++IA L+ N I+ +D+ S +
Sbjct: 423 HVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482
Query: 993 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039
D R ++ ++ E GRTV+ + H+ S + EA E+ +M+ G
Sbjct: 483 DGRTEHQILHNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 50/208 (24%)
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
L L +++ I G++T+++G GK++LLLA+ G++ + G+V ++ + +E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 197 QRT-------AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
+ T AY +Q + TV E + F + RY +T+ ++P
Sbjct: 71 EATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI--SGGQKKRLTTG 307
D ID+ TE E RGI SGGQ++R+
Sbjct: 122 D--IDLLPFGDQTEIGE---------------------------RGINLSGGQRQRICVA 152
Query: 308 EMMVGPALALFMDEISNGLDSSTTFHIV 335
+ +F+D+ + LD + H++
Sbjct: 153 RALYQNTNIVFLDDPFSALDIHLSDHLM 180
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 8e-04
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
+L+DVS + G++T++LG SGK+TLL +L Q + S GRV +R
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRV----------WAER 721
Query: 199 TAAYISQHDVHIGEMTVRETLAF 221
+ AY+ Q I TVR + F
Sbjct: 722 SIAYVPQQ-AWIMNATVRGNILF 743
|
Length = 1560 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 9e-04
Identities = 62/276 (22%), Positives = 109/276 (39%), Gaps = 48/276 (17%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD---SSLKVSGRVTYNGHDMNEFVP 196
L D+ +K G T L+G SGK+TLL L G L + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 197 QRTAAYISQH--DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
R + + + E TV + +AF + G+ + + E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGI----------PKEKAE---------- 121
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
K AA + + + +++ ++ +SGGQ +R+ ++
Sbjct: 122 ---KIAAEKLEMVGLADEFW---------------EKSPFELSGGQMRRVAIAGILAMEP 163
Query: 315 LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374
L +DE + GLD ++ L ++IH +G V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 375 IVYQG-PCELV--LDFFESMGFKCPERKSVADFLQE 407
I+ G P ++ +DF ++ P+ AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 9e-04
Identities = 63/274 (22%), Positives = 102/274 (37%), Gaps = 72/274 (26%)
Query: 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206
I G + ++G GK++LL AL ++D KV G V G +VPQ+ A+I Q+
Sbjct: 661 IPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGS--VAYVPQQ--AWI-QN 712
Query: 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQE 266
D ++RE + F Y + E + PDL ++ TE E
Sbjct: 713 D------SLRENILFG--KALNEKYYQQVLE------ACALLPDL--EILPSGDRTEIGE 756
Query: 267 ANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGL 326
V +SGGQK+R++ + A D+ + +
Sbjct: 757 KGV-------------------------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791
Query: 327 DSSTTFHIVNSLRQNIHILNG------TAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380
D+ HI + +L T IS L P+ D II++S G+I G
Sbjct: 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL---PQV----DVIIVMSGGKISEMGS 844
Query: 381 CELVLDFFESMGFKCPERKSVADFLQEVTSRKDQ 414
+ +L + A+FL+ + Q
Sbjct: 845 YQELLQ----------RDGAFAEFLRTYAPDEQQ 868
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 49/218 (22%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
++ K IL D++ I+ G+M ++G SGK+TLL + L+ SG+V NG
Sbjct: 4 ISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL-LEK--FDSGQVYLNGQ 60
Query: 190 DMNEFVPQR-------TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARRE 242
+ ++ Y+ Q+ I TV E L +G +Y L++ +RE
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD-------LGLKYKKLSKKEKRE 113
Query: 243 KEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302
K K L+ +GL++ + + +SGG+++
Sbjct: 114 K-------------KK--------------EALEKVGLNLKLKQKIYE-----LSGGEQQ 141
Query: 303 RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQ 340
R+ ++ P + DE + LD +++ L +
Sbjct: 142 RVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 56/251 (22%), Positives = 95/251 (37%), Gaps = 58/251 (23%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE----- 193
+LK ++ +T L+G GK+TL + L+G L G V + G ++
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 194 -FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
+ Q+ A + I + +AFS R GV E+ RR EA
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEA------- 120
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
L + + ++ +S GQKKR+ +V
Sbjct: 121 ---------------------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLR----QNIHILNGTAVISLLQPAPETYDLFDDII 368
A L +DE + GLD + ++ +R Q H++ + I L+ Y++ D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 369 LLSDGQIVYQG 379
+L GQI+ G
Sbjct: 208 VLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 0.001
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969
+++YE++ + R +V + I+E +E L + VG G+S LS Q++R
Sbjct: 1310 MSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQR 1366
Query: 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG-RTVVCTIHQ 1020
+ IA L+ P I+ +DE TS LD+ + ++ +T+ + + +T++ H+
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGY--PKKQETF 893
L+ V+ G L+G +G+GK+TL+ L G + T SG I I G K+
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT----SGKIIIDGVDITDKKVKL 78
Query: 894 TRIS---GYCEQNDIHSPLV-TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP- 948
+ I G Q + T+ + + + + E + ++ M +V L
Sbjct: 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFG--PINLGLSEEEI-ENRVKRAMNIVGLDYE 135
Query: 949 --LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
+S P E LS Q++R+ IA + P I+ +DEPT+GLD + ++ +K
Sbjct: 136 DYKDKS----PFE--LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE 189
Query: 1007 TVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ + + D+ + D + +M +G
Sbjct: 190 LHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
|
Length = 287 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTA 200
DVS I G + LLG GK+TLL LAG +G++ +G D++ P QR
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAG---FEQPTAGQIMLDGVDLSHVPPYQRPI 93
Query: 201 AYISQHDVHIGEMTVRETLAF 221
+ Q MTV + +AF
Sbjct: 94 NMMFQSYALFPHMTVEQNIAF 114
|
Length = 377 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 941 MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARAAA 998
E + + L Q L+ + G S RL +A+ L P ++ +DE TS LDA A
Sbjct: 38 GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
Query: 999 IVMRTV------KNTVETGRTVVCTIHQPSI----DIFEAFDELFLMKRG 1038
+++ E TV+ T + + FD ++
Sbjct: 98 LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQ 1020
LS Q++R+ IA + P II +DE TS LD +++T+K + TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 1021 PSIDIFEAFDELFLMKRGGQEIYVGP--LGSNSSDLIS 1056
+D D + +MK G E P L S +DL+
Sbjct: 200 -DLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQ 236
|
Length = 279 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 29/170 (17%)
Query: 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYISGNITISGYPKKQETFTRISGY 899
G+ + ++G +G GKTT + +LAG G T+S P+ +
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYE---- 75
Query: 900 CEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959
TV + LL S D T F EI + ++++ + V
Sbjct: 76 ----------GTVRD-LLSS------ITKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009
LS + +R+ IA L + I +DEP++ LD + + ++ E
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 22/88 (25%)
Query: 296 ISGGQKKRLTTGEMMVGPALA---------LFMDEISNGLDSSTTFHIVNSLRQNIHILN 346
+SGGQ++R+ A+A L +DE ++ LD T I+ +LR +
Sbjct: 97 LSGGQRQRI---------AIARALLRDPPILILDEATSALDPETEALILEALRA---LAK 144
Query: 347 GTAVISLLQPAPETYDLFDDIILLSDGQ 374
G VI ++ T D II+L DG+
Sbjct: 145 GKTVI-VIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 46/216 (21%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
L D+S + PG + +L+GP +GKTTL+ + G+ G V ++G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD---------- 67
Query: 200 AAYISQHDVH-IGEMTVRETLAFSARCQGVG------SRYDMLTELARREKEAGIKPDLF 252
+++ H I G+G + ++ LT E +F
Sbjct: 68 -TDLTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNRDKSVF 113
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
+F + A E + D L +GL D L +S GQK+ L G ++
Sbjct: 114 ASLFARLRAEERRR----IDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 313 PALALFMDEISNGL-DSST--TFHIVNSLRQNIHIL 345
L +DE G+ D+ T T ++ SL IL
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSIL 200
|
Length = 249 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 63/261 (24%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T+L V ++ G + L+GP +GKTTLL A+ G L + +G V G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGV--------GSRYDMLTELARREKEAGIKP 249
+A S+ + + T +L+F + V SR+D TE R E +
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAM-- 124
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
Q A D V +SGG+++R+
Sbjct: 125 ---------ERTGVAQFA----------------------DRPVTSLSGGERQRV----- 148
Query: 310 MVGPALA-----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364
++ ALA L +DE + LD + + +R+ + +G ++ +
Sbjct: 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYC 206
Query: 365 DDIILLSDGQIVYQGPCELVL 385
D+++LL+DG++ GP VL
Sbjct: 207 DELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T+L +++ ++PG L+ G +GKT+LL ALAG SGR++ F+PQ
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMPADSALLFLPQ 463
Query: 198 RTAAYISQ 205
R Y+ Q
Sbjct: 464 RP--YLPQ 469
|
Length = 604 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 62/272 (22%), Positives = 99/272 (36%), Gaps = 79/272 (29%)
Query: 126 SIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185
S ++ + L +VS I G + L+G +GKTTLL L G ++ SGR+
Sbjct: 7 SFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIV 63
Query: 186 YNGHDMNEFVPQRTAAYISQHDVHI--------GEMTVRETLA----FSARCQ---GVGS 230
++G D+ ++ A I + V I MTV E LA F+ R Q +
Sbjct: 64 FDGKDITDW----QTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW 119
Query: 231 RYDMLTELA-RREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289
Y++ L RR + AG
Sbjct: 120 VYELFPRLHERRIQRAGT------------------------------------------ 137
Query: 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDS---STTFHIVNSLRQNIHILN 346
+SGG+++ L G ++ L +DE S GL F + LR+
Sbjct: 138 ------MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-----Q 186
Query: 347 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
G + + Q A + L D +L +G +V +
Sbjct: 187 GMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 73/230 (31%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLAL--AGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
LK ++ I+ ++T L+GP GK+T L L L S+K+ G V +G D+
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI------ 72
Query: 198 RTAAYISQHDV-----HIG---------EMTVRETLAFSARCQGVGSRYDMLTELARREK 243
Y S DV +G M++ + +A+ R G+ ++K
Sbjct: 73 ----YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGI------------KDK 116
Query: 244 EAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303
+ K D ++ +K AA D D L + G+SGGQ++R
Sbjct: 117 K---KLDEIVEKSLKGAAL-----------------WDEVKDRLKKSAL--GLSGGQQQR 154
Query: 304 LTTGEMMVGPALA-----LFMDEISNGLDSSTTFHI---VNSLRQNIHIL 345
L + ALA L MDE ++ LD +T I + L+++ I+
Sbjct: 155 LC-----IARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIV 199
|
Length = 250 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 65/249 (26%), Positives = 98/249 (39%), Gaps = 40/249 (16%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T+L VS +T L+GP SGKTT L L D KVSG Y+G
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSG-YRYSG--------- 81
Query: 198 RTAAYISQHDVHIGEMTV---RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
DV +G ++ R+ L F R + R + AG++ +
Sbjct: 82 ---------DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLV- 131
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGL-DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGP 313
+E + L +GL D D L D R +SGGQ++ L +
Sbjct: 132 --------PRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFR-LSGGQQQLLCLARTLAVN 181
Query: 314 ALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373
L +DE ++ LD +TT I +R + + VI + + + D L DG
Sbjct: 182 PEVLLLDEPTSALDPTTTEKIEEFIRS---LADRLTVIIVTHNLAQAARISDRAALFFDG 238
Query: 374 QIVYQGPCE 382
++V +GP E
Sbjct: 239 RLVEEGPTE 247
|
Length = 276 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+LKD+S IKPG L+ GP +GK++L ALAG SGR+ + F+PQ
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEGEDLLFLPQ 71
Query: 198 R 198
R
Sbjct: 72 R 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 27/170 (15%)
Query: 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYISGNITISGYPKKQETFTRISGYC 900
G G + ++G +G GKTT + +LAG K ++ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS-Y-KPQYISPDYDG-- 416
Query: 901 EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960
TV + L +R+ S F EI++ + L+ L + V
Sbjct: 417 ----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV-----D 454
Query: 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
LS + +R+ IA L + +DEP++ LD IV + ++ +E
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504
|
Length = 591 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 39/185 (21%)
Query: 825 MKLKGVH--EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYISG 879
++L+ V +LN +S + R G + G SG GK+TL+ ++A +G +
Sbjct: 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67
Query: 880 NITISGYPKKQETFTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLRTEVDSETRKMF 936
IS E + + YC Q +P + TVY++L++ +R +
Sbjct: 68 GEDISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQ---------- 111
Query: 937 IEEIMELVELKPLRQSLV--GLPGE------SGLSTEQRKRLTIAVELVANPSIIFMDEP 988
+ L LP + LS +++R+++ L P ++ +DE
Sbjct: 112 -------PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164
Query: 989 TSGLD 993
TS LD
Sbjct: 165 TSALD 169
|
Length = 225 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 961 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC 1016
LS +++ +A+ L + + +DE GLD R + + + G V+
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 1017 TIHQPSIDIFEAFDELFLMKR 1037
H P ++ E D+L +K+
Sbjct: 137 ITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 22/164 (13%)
Query: 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---SGNITISGY------PKKQE 891
VS PG +L+G SG+GK+T GR + G I +G P K +
Sbjct: 343 VSFDLWPGETLSLVGESGSGKST-----TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQ 397
Query: 892 TFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
R + Q+ S P TV +S++ LR+ + + + ++E V L P
Sbjct: 398 ALRRDIQFIFQDPYASLDPRQTVGDSIMEP--LRVHGLLPGKAAAARVAWLLERVGLLP- 454
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
+ P E S QR+R+ IA L NP +I DE S LD
Sbjct: 455 -EHAWRYPHE--FSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 58/205 (28%)
Query: 821 MPKEMKLKGVH--EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS 878
M ++K++GV+ K +L ++ F +TA++G SG GK+TL+ L + +S
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVS 58
Query: 879 GNITISGYPKKQETFTRISG--YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMF 936
G R+ G + +I+SP + V LR R + + F
Sbjct: 59 G--------------ARLEGAVLLDNENIYSPNLDVVN-------LRKRVGMVFQQPNPF 97
Query: 937 IEEIMELVELKPLRQSLVGLPGES----------------------------GLSTEQRK 968
+ I + V P ++G +S LS Q++
Sbjct: 98 PKSIFDNVAFGP---RMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQ 154
Query: 969 RLTIAVELVANPSIIFMDEPTSGLD 993
RL IA L P +I MDEP S LD
Sbjct: 155 RLCIARVLAIEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 41/219 (18%)
Query: 828 KGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887
K V K +L + +S +F PG ++G++GAGK+TL+ ++AG +G
Sbjct: 12 KVVPPKKEILKD-ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--------EFNGEA 62
Query: 888 KKQETFTRISGYCEQNDIHSPLVTVYESL------LYSAWLRLR------TEVDSETRKM 935
+ GY Q P TV E++ + A R E D++ +
Sbjct: 63 RPAPGIKV--GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDAL 120
Query: 936 F-----IEEIMELVEL----KPLRQSLVGL---PGE---SGLSTEQRKRLTIAVELVANP 980
++EI++ + + L ++ L P + + LS +R+R+ + L++ P
Sbjct: 121 LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKP 180
Query: 981 SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 181 DMLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 48/191 (25%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
L D+S + PG + +++GP +GKTT++ + G+ G V + G D
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTD--------- 65
Query: 200 AAYISQHDVH-IGEMTVRETLAFSARCQGVG------SRYDMLTELARREKEAGIKPDLF 252
++ H I G+G + ++ LT E +F
Sbjct: 66 ---LTGLPEHQIARA-------------GIGRKFQKPTVFENLTVFENLELALPRDKSVF 109
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
+F + +A E + L+ +GL AD L G +S GQK+ L G M++
Sbjct: 110 ASLFFRLSAEEKDR----IEEVLETIGLADEADRLAGL-----LSHGQKQWLEIG-MLLM 159
Query: 313 --PALALFMDE 321
P L L +DE
Sbjct: 160 QDPKL-LLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 26/96 (27%)
Query: 295 GISGGQKKRLTTGEMMVGPALA-----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTA 349
+SGGQ++RL ++ AL L DE ++ LD+ T + SL + L T
Sbjct: 588 TLSGGQRQRL-----LIARALVRKPRILLFDEATSALDNRTQAIVSESLER----LKVTR 638
Query: 350 VI-----SLLQPAPETYDLFDDIILLSDGQIVYQGP 380
++ S ++ A D I +L G++V QG
Sbjct: 639 IVIAHRLSTIRNA-------DRIYVLDAGRVVQQGT 667
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGN---ITISGYP----KK 889
+S + G + G+ G+G+T LM+ L G ++ GG I N I+ P KK
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS-PLDAVKK 338
Query: 890 QETFT----RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
+ R +G+ I + + SL + + E EL+
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQN-MAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 946 LK--PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
LK + Q++ L G + Q+K L I+ L P +I DEPT G+D A A + +
Sbjct: 398 LKCHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV 451
Query: 1004 VKNTVETGRTVV 1015
++ + G+ ++
Sbjct: 452 MRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.003
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 124 FNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGR 183
F KK+++ + VS IK G L+G GK+TL + G + + SG
Sbjct: 14 FPVGKGFG-KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGE 69
Query: 184 VTYNGHDMNEF 194
+ + G D+ +
Sbjct: 70 ILFEGKDITKL 80
|
Length = 268 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 45/243 (18%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
+ DVS K G+ ++GP +GKTTL+ L D + G++ +G D+N
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINT------ 401
Query: 200 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
+ ++R+++A + G+ +R + E R +E +++
Sbjct: 402 ----------VTRESLRKSIATVFQDAGLFNR--SIRENIRLGREGATDEEVY------- 442
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFM 319
E +A D+ LK DTLVG+ R +SGG+++RL ++ A L +
Sbjct: 443 ---EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVL 495
Query: 320 DEISNGLDSSTTFHI---VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376
DE ++ LD T + +++LR+N T +I+ DL ++ L G+++
Sbjct: 496 DEATSALDVETEARVKNAIDALRKN----RTTFIIAHRLSTVRNADL---VLFLDQGRLI 548
Query: 377 YQG 379
+G
Sbjct: 549 EKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 105 ASKALPTFTSFFTNIIEAFFNSI-HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGK 163
SK + ++ + + LKD+S I G ++G +GK
Sbjct: 9 VSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFW--ALKDISFEIYKGERVGIIGHNGAGK 66
Query: 164 TTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSA 223
+TLL +AG + SG+V G + A I E+T RE +
Sbjct: 67 STLLKLIAGIYKPT---SGKVKVTG---------KVAPLIELGAGFDPELTGRENIYLRG 114
Query: 224 RCQG 227
G
Sbjct: 115 LILG 118
|
Length = 249 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 52/203 (25%), Positives = 76/203 (37%), Gaps = 53/203 (26%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR 895
VLL VS + G LT ++G +G+GK+TL+ L
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------------------- 708
Query: 896 ISGYCEQNDIHSPLVTVYESLLY---SAWLRLRTEVDSETRKMFIEE----IMELVELKP 948
Q +I V S+ Y AW+ T + F EE + + V +
Sbjct: 709 ------QFEISEGRVWAERSIAYVPQQAWIMNATVRGNIL--FFDEEDAARLADAVRVSQ 760
Query: 949 LRQSLVGLPGESGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997
L L L G GL TE Q+ R+++A + AN + +D+P S LDA
Sbjct: 761 LEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVG 818
Query: 998 AIVMRTVKNTVETGRTVVCTIHQ 1020
V+ G+T V HQ
Sbjct: 819 ERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 21/226 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET---FT 894
LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 895 RISGYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL 953
R G QN D TV + + + E + + EE+++ V+ L ++
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGM----------ENQGIPREEMIKRVDEALLAVNM 130
Query: 954 VGLPGE--SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG 1011
+ + LS Q++R+ +A + P II +DE TS LD +MR + E
Sbjct: 131 LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY 190
Query: 1012 RTVVCTIHQPSIDIFEAFDELFLMKRGG--QEIYVGPLGSNSSDLI 1055
+ V +I +D + D + +MK G +E L + S D++
Sbjct: 191 QLTVLSITH-DLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMV 235
|
Length = 277 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 942 ELVELKPLRQSLV-----GLPGESGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLD 993
ELVE + LRQ+ + +SGLS Q++RL IA + P +I MDEP S LD
Sbjct: 126 ELVE-RSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 45/293 (15%)
Query: 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY-------PKKQETFT 894
S A G + +MG+SG+GK+T++ +L + G + I G + +E
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGVDIAKISDAELREVRR 105
Query: 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV 954
+ Q+ P +TV ++ + L +++E R+ E+ ++ + L
Sbjct: 106 KKIAMVFQSFALMPHMTVLDNTAFGMEL---AGINAEERR---EKALDALRQVGLENYAH 159
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VKNTV 1008
P E LS R+R+ +A L NP I+ MDE S LD ++RT VK
Sbjct: 160 SYPDE--LSGGMRQRVGLARALAINPDILLMDEAFSALDP-----LIRTEMQDELVKLQA 212
Query: 1009 ETGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEIYVGP----LGSNSSDLI-SYLQL 1060
+ RT+V H D+ EA D + +M+ G+ + VG L + ++D + ++ +
Sbjct: 213 KHQRTIVFISH----DLDEAMRIGDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRG 267
Query: 1061 MPMHVTF----IFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIY 1109
+ + F I + +G+ + G+ P + + + +E I+ N +
Sbjct: 268 VDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKF 320
|
Length = 400 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 804 PFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 863
P + + D+V+++ +D LVL N ++ + AL+G +G+GK+T
Sbjct: 335 PLQSGRIDIDNVSFA-----------YRDDNLVLQN-INLSVPSRGFVALVGHTGSGKST 382
Query: 864 LMDVLAGRKTGGYISGNITISGYPKKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAW 921
L +L G G I + G P + R Q D P+V ++ L A
Sbjct: 383 LASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD---PVVLA-DTFL--AN 434
Query: 922 LRLRTEVDSETRKMFIEEIMELVELKPLRQSLV-GLP---GESG--LSTEQRKRLTIAVE 975
+ L ++ E + + +E V+L L +SL GL GE G LS Q++ L +A
Sbjct: 435 VTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490
Query: 976 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035
LV P I+ +DE T+ +D+ + + + V T+V H+ S I EA D + ++
Sbjct: 491 LVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVL 547
Query: 1036 KRG 1038
RG
Sbjct: 548 HRG 550
|
Length = 592 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
L + + S++ +DEP +GL + ++ +K E G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.004
Identities = 65/255 (25%), Positives = 98/255 (38%), Gaps = 72/255 (28%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
L VS ++PG + LLG +GK+TL+ L+G SG + +G + P+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDA 80
Query: 200 AAY----ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
A + Q + ++V E + L R ID
Sbjct: 81 LAAGIATVHQELSLVPNLSVAENI--------------FLGREPTR-------RFGLID- 118
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
KA +E L LGLD+ DTLVGD +S Q++ MV A
Sbjct: 119 -RKAMRRRAREL-------LARLGLDIDPDTLVGD-----LSIAQRQ-------MVEIAR 158
Query: 316 ALF-------MDEISNGLDSSTT---FHIVNSLRQNIHILNGTAV--IS--LLQPAPETY 361
AL +DE + L T F ++ L+ G A+ IS L E +
Sbjct: 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ-----GVAIIYISHRL----DEVF 209
Query: 362 DLFDDIILLSDGQIV 376
++ D I +L DG++V
Sbjct: 210 EIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 47/253 (18%), Positives = 95/253 (37%), Gaps = 50/253 (19%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF----- 194
+ D I G + +++G SGK+T + L ++ + +G++ +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 195 --VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252
V ++ + Q MT+ + + G E R+EK
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEK--------- 109
Query: 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG 312
A E LK++GL+ DE+ SGG ++R+ +
Sbjct: 110 --------ALEL----------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372
L MDE + LD + + L++ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 373 GQIVYQGPCELVL 385
G+IV G + +L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
ILKD+S PG +LG +GK+TLL +AG +D +NG E P
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE--------FNG----EARPA 65
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTEL-ARREKEAGIKPDLFID 254
Y+ Q TVRE + +GV D L K A +PD +D
Sbjct: 66 PGIKVGYLPQEPQLDPTKTVRENVE-----EGVAEIKDALDRFNEISAKFA--EPDADMD 118
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTL---VGDEMVRGISGGQKKRLTTGEMMV 311
+ A E QE D + L++ D L D V +SGG+++R+ +++
Sbjct: 119 ALLAEQA-ELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLL 177
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI 351
L +DE +N LD+ + V L Q++ GT V
Sbjct: 178 SKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVA 213
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS---LKVSGRVTY 186
+LK+++ I+ G M + G SGKT+LL+ + G+L+ S +K SGR+++
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISF 102
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174
+LKD+S I PG L+G +GK+TLL +AG+L
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1326 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-234 Score=2147.23 Aligned_cols=1229 Identities=53% Similarity=0.905 Sum_probs=1146.3
Q ss_pred cchHHhhhHHHHhhCCC------------------CChHHhHHHHHHhhhcccccHHHHHHHHHHHhhhcCCCCCcceEE
Q 046656 31 DDEKEALKWAAHEKLPS------------------LGLQERQRLIDKLVKVTDVDNEKFMLKLRYRFDRVGIELPKVEVR 92 (1326)
Q Consensus 31 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~v~ 92 (1326)
+||||+++|||+||||| +++.+++.++++..+..++||++++.++++|++++ ++|.++++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p~~~~~ 89 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDRSLLRSIFESEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELPTIEVR 89 (1391)
T ss_pred chhHHHHHHHHHhcCccccchhhhhhccCcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCCceEEE
Confidence 34999999999999999 66778999999999999999999999999999998 89999999
Q ss_pred EeccEEEEEEecCcCcCCCchhhHHHHHHHHhhhhhhcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhc
Q 046656 93 YEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 93 ~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G 172 (1326)
++++.+++++..+ ||+.|...+.++.+....+.. ++.+.+||+|+||.++||+|++++|||||||||||++|+|
T Consensus 90 ~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g 163 (1391)
T KOG0065|consen 90 FSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAG 163 (1391)
T ss_pred eeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhC
Confidence 9999999998765 999999988888776554433 4456789999999999999999999999999999999999
Q ss_pred ccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchh
Q 046656 173 QLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF 252 (1326)
Q Consensus 173 ~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~ 252 (1326)
.++...+..|+|+|||++.+++.+++.++|++|+|+|+|+|||||+|+|+++|++++.|++ +..|+|+.+
T Consensus 164 ~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~------- 233 (1391)
T KOG0065|consen 164 KLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA------- 233 (1391)
T ss_pred CCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-------
Confidence 9988777789999999999999999999999999999999999999999999999999987 566666542
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHH
Q 046656 253 IDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTF 332 (1326)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~ 332 (1326)
.++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+|||++|+.
T Consensus 234 ----------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal 297 (1391)
T KOG0065|consen 234 ----------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAF 297 (1391)
T ss_pred ----------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHH
Confidence 2689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCcc
Q 046656 333 HIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRK 412 (1326)
Q Consensus 333 ~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~ 412 (1326)
++++.||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++++++++
T Consensus 298 ~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k 377 (1391)
T KOG0065|consen 298 QIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKK 377 (1391)
T ss_pred HHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcCh
Q 046656 413 DQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNS 492 (1326)
Q Consensus 413 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~ 492 (1326)
++.++|..+..|+.+.+++|+.+.|.+++.++++..+++.+.++.+.++.++..+.|.++.|+|++.|..|++++++||.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~ 457 (1391)
T KOG0065|consen 378 DQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNY 457 (1391)
T ss_pred cccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHH
Q 046656 493 FVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAY 572 (1326)
Q Consensus 493 ~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay 572 (1326)
++++++.++.+++|+++|++|+++.+ ++..++..+.|++||++++.++++++++.++++++|||+|||+..||++|++
T Consensus 458 ~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~ 535 (1391)
T KOG0065|consen 458 FYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAE 535 (1391)
T ss_pred eEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHH
Confidence 99999999999999999999999985 4556678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Q 046656 573 ALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFA 652 (1326)
Q Consensus 573 ~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l 652 (1326)
.++.+++++|++++++++|.+|+||++||.+++++||.+++++++.+++++++|++++++++++.+|+++|++.++++.+
T Consensus 536 al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m 615 (1391)
T KOG0065|consen 536 ALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFM 615 (1391)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCCccccccCC---------------CcchhhHHhhccCcc--
Q 046656 653 FGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNS---------------TESLGVQVLKSRGFF-- 715 (1326)
Q Consensus 653 ~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~---------------~~~~g~~~L~~~~~~-- 715 (1326)
++||+++..+||+||+|++|+||+.|+++++++|||++++|.|.+.++ ..+.|.+++..+++.
T Consensus 616 ~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~ 695 (1391)
T KOG0065|consen 616 YGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKV 695 (1391)
T ss_pred HcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEeccccccc
Confidence 999999999999999999999999999999999999999999973221 356788999988887
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccccccccccCCcccccccCCCCCCCCCCCccc
Q 046656 716 ---PHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVR 792 (1326)
Q Consensus 716 ---~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1326)
...+|+|+++|+++||+++|+++++++++|+++..+.+.....+...++........ .........
T Consensus 696 ~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 764 (1391)
T KOG0065|consen 696 QYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGS-----------SSEIEKLDD 764 (1391)
T ss_pred ccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccc-----------ccccccccc
Confidence 677899999999999999999999999999999988887766543322211000000 000000001
Q ss_pred cCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 793 ATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 793 ~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
....+++++..|+.+..++++||.|.+++|.+++.+| +++++|+|||+.++||.++||||+||||||||||+|+||+
T Consensus 765 s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~ 841 (1391)
T KOG0065|consen 765 SSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK 841 (1391)
T ss_pred ccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc
Confidence 1111355778888889999999999999998888776 5678999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc
Q 046656 873 TGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS 952 (1326)
Q Consensus 873 ~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~ 952 (1326)
++|.++|+|+|||+|+++..|+|.+|||.|+|.|.+.+||||.|.|+|+||++.+++.+++.++||++++.+||++++|.
T Consensus 842 t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~da 921 (1391)
T KOG0065|consen 842 TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADA 921 (1391)
T ss_pred ccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhh
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhce
Q 046656 953 LVGLPGESGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 953 ~vg~~~~~~LSgGqrqrl~ia~aL~~~p-~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
+||.|| +|||++|||||+||++|++|| .||||||||||||++++..|++++|+++++|+|||||+||||.++++.||+
T Consensus 922 iVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~ 1000 (1391)
T KOG0065|consen 922 LVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDE 1000 (1391)
T ss_pred hccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhH
Confidence 999999 899999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCcEEEEEcCCCCChhhHHHHHhhcCcchhhHHhhhccCcccccCCCCccceEEEeccchhhhhccCCHHHHhhc
Q 046656 1032 LFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKH 1111 (1326)
Q Consensus 1032 v~~l~~gg~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~ 1111 (1326)
+++|++||++||+||+|++++++++||+ +++|++ |++..|||||||||++++.+...+.||++.|++
T Consensus 1001 LLLLkrGGqtVY~G~lG~~s~~li~YFe------------s~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~ 1067 (1391)
T KOG0065|consen 1001 LLLLKRGGQTVYFGPLGENSSKLIEYFE------------SIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKN 1067 (1391)
T ss_pred HHHHhcCCeEEEecCcccccHHHHHHHH------------hcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhc
Confidence 9999999999999999999999999999 777875 666669999999999999988888999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCC-CCCCCCCCcccCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 046656 1112 SDLYRRNKALIEELSKPAPD-SQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGT 1190 (1326)
Q Consensus 1112 s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~~~~r~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~ 1190 (1326)
|+++++++++++++++++++ +.+.+++++|++|++.|++.|+||++++|||+|+|+++|++++++.||++|++||+.|+
T Consensus 1068 S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~ 1147 (1391)
T KOG0065|consen 1068 SEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH 1147 (1391)
T ss_pred cHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC
Confidence 99999999999999999998 78888999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCHHhHHHHHHHHHHHHHHHHHhhhhhcccchHHhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 046656 1191 KTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYA 1270 (1326)
Q Consensus 1191 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~ 1270 (1326)
++||++|.+|++|+++++.+..++..++|.+..||.++||||++|||||.+|++||+++|+||+++++.+|++|+|+
T Consensus 1148 ---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~ 1224 (1391)
T KOG0065|consen 1148 ---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYY 1224 (1391)
T ss_pred ---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeee
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCC
Q 046656 1271 MIGFEWTAAKFF--------CLLYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326 (1326)
Q Consensus 1271 ~~g~~~~~~~f~--------~~~~~~~~g~~~~~~~p~~~~a~~~~~~~~~~~~lf~G~~i~~~ 1326 (1326)
|+||++++.+|+ +++|++++|||+++++||.++|+++++++++++++||||++|++
T Consensus 1225 ~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~ 1288 (1391)
T KOG0065|consen 1225 PIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRS 1288 (1391)
T ss_pred eccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccc
Confidence 999999998765 34677889999999999999999999999999999999999985
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-211 Score=2082.97 Aligned_cols=1297 Identities=61% Similarity=1.040 Sum_probs=1152.0
Q ss_pred CCCCCCCC----CCCCccchHHhhhHHHHhhCCC--------C-----------------------ChHHhHHHHHHhhh
Q 046656 18 EGAFPRSP----REEEEDDEKEALKWAAHEKLPS--------L-----------------------GLQERQRLIDKLVK 62 (1326)
Q Consensus 18 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--------~-----------------------~~~~~~~~~~~~~~ 62 (1326)
+++|++.+ +.++.|||||+|+|||+||||| | +.++++.+++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (1470)
T PLN03140 24 EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFK 103 (1470)
T ss_pred hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhhc
Confidence 68886531 1124678999999999999999 1 22678999999999
Q ss_pred cccccHHHHHHHHHHHhhhcCCCCCcceEEEeccEEEEEEecCcCcCCCchhhHHHHHHHHhhhhhhcccccccceeecc
Q 046656 63 VTDVDNEKFMLKLRYRFDRVGIELPKVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKD 142 (1326)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~g~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 142 (1326)
+.++|+++|+.++++|.+++|+++|++||||+||+|++++.++++.+||+.|.+.+.++.+.+.++...+++.+++||+|
T Consensus 104 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~ 183 (1470)
T PLN03140 104 VAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKD 183 (1470)
T ss_pred ccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccC
Confidence 99999999999999999999999999999999999999999999999999999988877766544332234456889999
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFS 222 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 222 (1326)
+|+.++|||+++|+||||||||||||+|+|+++|+.+++|+|.|||+++++..+++.++||+|+|.|++++||+|||.|+
T Consensus 184 vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~ 263 (1470)
T PLN03140 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS 263 (1470)
T ss_pred CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH
Confidence 99999999999999999999999999999999887778999999999988776678899999999999999999999999
Q ss_pred hhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhH
Q 046656 223 ARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302 (1326)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 302 (1326)
++|++.+.++++..+..+++++.++.|+.++|.+|++...++++.+..++++++.+||++|+||.||++++++|||||||
T Consensus 264 a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerk 343 (1470)
T PLN03140 264 ARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKK 343 (1470)
T ss_pred HHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccce
Confidence 99998777776666777888888888888889999988888888888899999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcChh
Q 046656 303 RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCE 382 (1326)
Q Consensus 303 Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~ 382 (1326)
||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+||++
T Consensus 344 RVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~ 423 (1470)
T PLN03140 344 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRD 423 (1470)
T ss_pred eeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHH
Confidence 99999999999999999999999999999999999999987667899999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhcCcCCCCCCCCc
Q 046656 383 LVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPA 462 (1326)
Q Consensus 383 ~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 462 (1326)
++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|++++.++++.++++.|.++.+.++.
T Consensus 424 ~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 503 (1470)
T PLN03140 424 HILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKA 503 (1470)
T ss_pred HHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccc
Confidence 99999999999999999999999999999888788877667878889999999999999998888887777666555666
Q ss_pred cccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchhhHHHHHHHHHHHH
Q 046656 463 ALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTTF 542 (1326)
Q Consensus 463 ~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~ 542 (1326)
....++|..++++|++.|++|++++++||+..+++++++.+++|+++|++||+++.+.....++..+.|++||++++.++
T Consensus 504 ~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~ 583 (1470)
T PLN03140 504 ALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMF 583 (1470)
T ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 56667899999999999999999999999999999999999999999999999987665555667889999999999999
Q ss_pred hhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHHHHHHHHHHHHHHH
Q 046656 543 NGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMA 622 (1326)
Q Consensus 543 ~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~ 622 (1326)
++++++..++.++|+|+|||+..||++|+|+++++++++|+.++++++|++|+|||+||.+++++||.++++++++++++
T Consensus 584 ~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~ 663 (1470)
T PLN03140 584 NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMA 663 (1470)
T ss_pred HHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCCcccc-ccCCC
Q 046656 623 SALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKF-TTNST 701 (1326)
Q Consensus 623 ~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~~~~~~~~-~~~~~ 701 (1326)
+++|++++++++++.+|+.+++++++++++|+||+++.++||+||+|++|+||+.|+++|+++|||.+..|.+. +....
T Consensus 664 ~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~ 743 (1470)
T PLN03140 664 AGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNS 743 (1470)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888643 22234
Q ss_pred cchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccccccccccC-----Cccccc
Q 046656 702 ESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIG-----GTIQLS 776 (1326)
Q Consensus 702 ~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 776 (1326)
.+.|.++|..+++...+.|+|++++++++++++|+++++++++|+++..........+........... ......
T Consensus 744 ~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1470)
T PLN03140 744 TRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGN 823 (1470)
T ss_pred cccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccc
Confidence 578999999999998889999999999999999999999999999876655444321110000000000 000000
Q ss_pred c--cCC---CCCCCC-----CCC-ccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEE
Q 046656 777 T--YGS---NSSHSK-----NSG-VVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAF 845 (1326)
Q Consensus 777 ~--~~~---~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i 845 (1326)
. ... ...... ... ........++++.+|+.|..++|+||+|.++++.+.+..+..++++.+|+|||+++
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i 903 (1470)
T PLN03140 824 NTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF 903 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEE
Confidence 0 000 000000 000 00001123345677888999999999999998876555555555678999999999
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~ 925 (1326)
+||+++||+|||||||||||++|+|+.+++..+|+|.+||.+.+...+++.+|||+|+|.+++.+||+|+|.|++.+|.+
T Consensus 904 ~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~ 983 (1470)
T PLN03140 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLP 983 (1470)
T ss_pred ECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCC
Confidence 99999999999999999999999999876678999999998876555677899999999999999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 046656 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005 (1326)
Q Consensus 926 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~ 1005 (1326)
.+.+.++++++++++++.++|.+++|+.+|.++.++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+
T Consensus 984 ~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~ 1063 (1470)
T PLN03140 984 KEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1063 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 66666677788999999999999999999988878999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCChhhHHHHHhhcCcchhhHHhhhccCcccccCCCCc
Q 046656 1006 NTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNP 1085 (1326)
Q Consensus 1006 ~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~np 1085 (1326)
+++++|+||||++|||+.++++.||++++|++||+++|+|+.+++++++++||+ +++|+++||+++||
T Consensus 1064 ~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~------------~~~g~~~~p~~~NP 1131 (1470)
T PLN03140 1064 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFE------------AIPGVPKIKEKYNP 1131 (1470)
T ss_pred HHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHH------------hcCCCCCCCCCCCc
Confidence 999889999999999997789999999999988999999999998899999999 67788889999999
Q ss_pred cceEEEeccchhhhhccCCHHHHhhccHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHhhcChh
Q 046656 1086 ATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPP 1165 (1326)
Q Consensus 1086 a~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~r~~~~~~R~~~ 1165 (1326)
||||||+++.+.+...+.||++.|++|++++++++.+++++.+.++..+..++++|++|+++|+++|+||+++++||||.
T Consensus 1132 Ad~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~ 1211 (1470)
T PLN03140 1132 ATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPD 1211 (1470)
T ss_pred hhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHh
Confidence 99999999877665556799999999999999988888888777666666667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhcccchHHhHHHHHhhcCCCCCChHHH
Q 046656 1166 YNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSY 1245 (1326)
Q Consensus 1166 ~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~er~vf~rE~~~~~Y~~~~y 1245 (1326)
|+++|+++++++|+++|++||++|++..+++|+++++|++|++++|+++.++++++|.+..||+||+|||++|||++.+|
T Consensus 1212 ~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y 1291 (1470)
T PLN03140 1212 YNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPY 1291 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence 99999999999999999999999998778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 046656 1246 AFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKFFCL--------LYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNV 1317 (1326)
Q Consensus 1246 ~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~--------~~~~~~g~~~~~~~p~~~~a~~~~~~~~~~~~l 1317 (1326)
++|++++|+||.++++++|++|+|||+||++++++||.| ++++++|+++++++||.++|++++++++++|++
T Consensus 1292 ~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~l 1371 (1470)
T PLN03140 1292 AIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNL 1371 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988733 344678999999999999999999999999999
Q ss_pred hcccccCCC
Q 046656 1318 FSGFVIPRP 1326 (1326)
Q Consensus 1318 f~G~~i~~~ 1326 (1326)
||||++|++
T Consensus 1372 f~Gf~i~~~ 1380 (1470)
T PLN03140 1372 FSGFFIPRP 1380 (1470)
T ss_pred HeeeccChH
Confidence 999999974
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-172 Score=1718.47 Aligned_cols=1192 Identities=32% Similarity=0.551 Sum_probs=976.9
Q ss_pred ccHHHHHHHHHHHhhhcCCCCC--cceEEEeccEEEEEEecCcCcCCCchhhHHHHHHHHhhhhhhcccccccceeecce
Q 046656 66 VDNEKFMLKLRYRFDRVGIELP--KVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDV 143 (1326)
Q Consensus 66 ~~~~~~~~~~~~~~~~~g~~~p--~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 143 (1326)
-|++++++.+.++.++.+...| +++|+|+||+|++. ..+....||+.|.+.+........+. ..+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV-AADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE-eccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 3566777665555555555555 99999999999993 34556689999887775553332221 12334567899999
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC-ceeeEEEECCccCCCCC--ccceEEEEccCCCCCCCCCHHHHHH
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||.++++.. .++.++||+|+|.|++++||+||+.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974321 25999999998875432 2456999999999999999999999
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
|+++++.+..+.+ ...+.+ ..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9988764321110 000110 01123567899999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcC
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 380 (1326)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++||+.++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999875577888888999999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhcCcCCCC---
Q 046656 381 CELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKS--- 457 (1326)
Q Consensus 381 ~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 457 (1326)
++++.+||+++||.||++.++|||+.+++++.++ +++...+. ....+.++++++|++++.++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999887542 22211111 122568899999999887776666554321110
Q ss_pred ------------CCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCC
Q 046656 458 ------------KSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSD 525 (1326)
Q Consensus 458 ------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~ 525 (1326)
+..+.....++|..++++|++.|++|+++.++||+..++.++++.+++|+++|++||+.+.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 001112234568899999999999999999999999999999999999999999999987543 34
Q ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccH
Q 046656 526 GGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNI 605 (1326)
Q Consensus 526 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~ 605 (1326)
.+.+.|++||++++.++.++.++...+.++|+|+|||..++|++++|++++.+.++|+.++.+++|++|+|||+||.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 46689999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHH
Q 046656 606 GRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVA 685 (1326)
Q Consensus 606 ~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~ 685 (1326)
++||.+++++++...++.+++++++++++++.+|+.+++++++++++|+||+++.++||+||+|++|+||+.|+++|++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCcccc---ccC---------------------CCcchhhHHhhc-cCcccccchhHHHHHHHHHHHHHHHHHHH
Q 046656 686 NEFFGHSWRKF---TTN---------------------STESLGVQVLKS-RGFFPHAFWYWIGLGAMIGFVLLFNIGFT 740 (1326)
Q Consensus 686 nef~~~~~~~~---~~~---------------------~~~~~g~~~L~~-~~~~~~~~~~w~~~~~lig~~~~f~i~~~ 740 (1326)
|||.+..+.|. +.+ .....|.++|.. +++. ..|+|++++++++++++|.++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHH
Confidence 99999888774 110 013478888884 4544 45899999999999999999999
Q ss_pred HHHHhccccCCCceeeecccccc-ccc-------cccCCcccccccCCCCCCCCCCCccccCCCccC-CcccCCCCceEE
Q 046656 741 LSLTFLNQFEKPQAVILEESESN-YLD-------NRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKR-GMVLPFEPYSLT 811 (1326)
Q Consensus 741 l~l~~l~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 811 (1326)
++++|.++......+........ ... +....+.+..++...... ......... ....+.....++
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~ 761 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLT------DESDDVNDEKDMEKESGEDIFH 761 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccc------cccccccccccccccCCCceEE
Confidence 99999886544433322111000 000 000000000000000000 000000000 000001123578
Q ss_pred EecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-eeEEEEEEcCccCCc
Q 046656 812 FDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGNITISGYPKKQ 890 (1326)
Q Consensus 812 ~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~ 890 (1326)
|+||+|.++.+ .+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ +.+|+|.+||++...
T Consensus 762 ~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 762 WRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred EEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 99999887421 13467999999999999999999999999999999999997643 457999999998753
Q ss_pred ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 046656 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRL 970 (1326)
Q Consensus 891 ~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl 970 (1326)
.+++.+|||+|+|.+++.+||+|++.|++.++.+...++++++++++++++.++|.+++|+.+|.++. +|||||||||
T Consensus 833 -~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl 910 (1394)
T TIGR00956 833 -SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRL 910 (1394)
T ss_pred -hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHH
Confidence 46778999999999999999999999999888766566677778899999999999999999987654 7999999999
Q ss_pred HHHHHHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCC
Q 046656 971 TIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGS 1049 (1326)
Q Consensus 971 ~ia~aL~~~p~-illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~ 1049 (1326)
+||+||+.+|+ ||||||||||||+.++..|++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|+.++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999999997 99999999999999999999999999888999999999999767889999999999889999999998
Q ss_pred ChhhHHHHHhhcCcchhhHHhhhccCcccccCCCCccceEEEeccchhhhhccCCHHHHhhccHHHHHHHHHHHHhcCCC
Q 046656 1050 NSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKALIEELSKPA 1129 (1326)
Q Consensus 1050 ~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1129 (1326)
+++++++||+ + .|.++||+++|||||+||+++.+.+.....+|.+.|++|++++++.+.++++..+.
T Consensus 991 ~~~~~~~yf~------------~-~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1057 (1394)
T TIGR00956 991 NSHTIINYFE------------K-HGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAEL 1057 (1394)
T ss_pred ccchHHHHHH------------h-cCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhccc
Confidence 8899999999 3 37667999999999999999875544344689999999999888776666554432
Q ss_pred CCCC---CCCCCCcccCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHH
Q 046656 1130 PDSQ---DIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMY 1206 (1326)
Q Consensus 1130 ~~~~---~~~~~~~~~~~~~~q~~~~~~r~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~ 1206 (1326)
.... +....++|++|+++|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|
T Consensus 1058 ~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f 1134 (1394)
T TIGR00956 1058 SKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVF 1134 (1394)
T ss_pred ccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHH
Confidence 2111 111224699999999999999999999999999999999999999999999999997 4789999999999
Q ss_pred HHHHHHHHhhhhhcccchHHhHHHH-HhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHH-----
Q 046656 1207 TAVFFIGAQLCSSVQPVVAVERTVY-YREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAK----- 1280 (1326)
Q Consensus 1207 ~~~~~~~~~~~~~v~~~~~~er~vf-~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~----- 1280 (1326)
+++++.++.+ ++++|.|..||.+| +|||++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++..
T Consensus 1135 ~~~~~~~~~~-~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~ 1213 (1394)
T TIGR00956 1135 MATVLFNPLI-QQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVH 1213 (1394)
T ss_pred HHHHHHHHHH-HHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccccccccc
Confidence 9988877763 45668888888875 9999999999999999999999999999999999999999999987654
Q ss_pred --HHHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCC
Q 046656 1281 --FFCL--------LYFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326 (1326)
Q Consensus 1281 --f~~~--------~~~~~~g~~~~~~~p~~~~a~~~~~~~~~~~~lf~G~~i~~~ 1326 (1326)
|+.| ++.+++|+++++++||.++|+.+++++++++++||||++|++
T Consensus 1214 ~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~ 1269 (1394)
T TIGR00956 1214 ERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPS 1269 (1394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChh
Confidence 4421 234568999999999999999999999999999999999863
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-79 Score=765.70 Aligned_cols=570 Identities=26% Similarity=0.431 Sum_probs=479.8
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 212 (1326)
+++++++|+|+|+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.++++
T Consensus 34 ~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 34 ERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCcc
Confidence 34467899999999999999999999999999999999999887545689999999987654456789999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+|||.|+++++.+... .+ ++....++++++.+||++++||.||++.
T Consensus 114 lTV~e~l~f~~~~~~~~~~-------~~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 162 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRV-------TK------------------------KEKRERVDEVLQALGLRKCANTRIGVPG 162 (617)
T ss_pred CcHHHHHHHHHhcCCCCCC-------CH------------------------HHHHHHHHHHHHHcCchhcCcCccCCCC
Confidence 9999999999887643210 00 1122357889999999999999999864
Q ss_pred -ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 293 -VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 293 -~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .+.|+|+++|||+.+++++||++++|+
T Consensus 163 ~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~ 241 (617)
T TIGR00955 163 RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMA 241 (617)
T ss_pred CCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEee
Confidence 789999999999999999999999999999999999999999999999876 478888999999899999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhc
Q 046656 372 DGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELR 451 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~ 451 (1326)
+|+++|+|+++++.+||+++|++||++.+++||+.++.+.....+. . ...+.+++.+.++.+..+++..+...
T Consensus 242 ~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~ 314 (617)
T TIGR00955 242 EGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTN 314 (617)
T ss_pred CCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhh
Confidence 9999999999999999999999999999999999998765322110 0 00123455566666555444433322
Q ss_pred CcCCCCC---CCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcch
Q 046656 452 TPLDKSK---SHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGI 528 (1326)
Q Consensus 452 ~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~ 528 (1326)
....... ..........|..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~ 391 (617)
T TIGR00955 315 LWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQN 391 (617)
T ss_pred hhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHH
Confidence 1111000 00011122456789999999999999999999999999999999999999999999986543 23455
Q ss_pred hhHHHHHHHHHHHHhhhHH-HHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHH
Q 046656 529 YIGAMFFAVIMTTFNGMSD-ISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGR 607 (1326)
Q Consensus 529 ~~g~lff~~~~~~~~~~~~-~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ 607 (1326)
..|++|+.++...+.++.. +.....++++|+||+..++|++++|++++.+.++|+.++.+++|++++|||+|+.+++++
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 6888999988887776544 455557999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHH
Q 046656 608 LFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANE 687 (1326)
Q Consensus 608 ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~ne 687 (1326)
||.+++++++...++.+++.++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||+.|++++++.||
T Consensus 472 f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~ne 551 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ 551 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCc-cccccCC---CcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046656 688 FFGHSW-RKFTTNS---TESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFL 746 (1326)
Q Consensus 688 f~~~~~-~~~~~~~---~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l 746 (1326)
|.+..+ .|...+. +...|..+++.+++... ++|.+++++++++++|.++.+++|++.
T Consensus 552 f~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 552 WSDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred hCCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998775 3432111 23458899999988654 459999999999999999999999863
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-78 Score=757.47 Aligned_cols=608 Identities=22% Similarity=0.353 Sum_probs=469.3
Q ss_pred CcceEEEeccEEEEEEecCcCcCCCchhhHHHHHHHHhhhhhhcccccccceeecceeEEEeCceEEEEecCCCCChhHH
Q 046656 87 PKVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTL 166 (1326)
Q Consensus 87 p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTL 166 (1326)
+.++++|.|+++.+.......+... +.+.+.. ......++++++++++|+|+|+.++|||+++|+||||||||||
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTL 110 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSN----IKRILGH-KPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTL 110 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccc----ccccccc-ccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 5789999999999753310111110 1110000 0011223344556789999999999999999999999999999
Q ss_pred HHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhC
Q 046656 167 LLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAG 246 (1326)
Q Consensus 167 L~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1326)
|++|+|+++|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... ..+
T Consensus 111 L~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~------ 175 (659)
T PLN03211 111 LNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTK------ 175 (659)
T ss_pred HHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCH------
Confidence 99999998774 3589999999887532 23569999999999999999999999876542110 000
Q ss_pred CCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCC
Q 046656 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGL 326 (1326)
Q Consensus 247 i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgL 326 (1326)
++....++++++.+||++++||.+|++..++|||||||||+||++|+.+|+|++|||||+||
T Consensus 176 ------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgL 237 (659)
T PLN03211 176 ------------------QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 237 (659)
T ss_pred ------------------HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 11223467889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHH
Q 046656 327 DSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQ 406 (1326)
Q Consensus 327 D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~ 406 (1326)
|+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||.||++.|||||+.
T Consensus 238 D~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~l 316 (659)
T PLN03211 238 DATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLL 316 (659)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHH
Confidence 99999999999999876 46788888888877899999999999999999999999999999999999999999999999
Q ss_pred HhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhcC---cCCCCC-----CCCc-cccCCCCCCcHHHHH
Q 046656 407 EVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRT---PLDKSK-----SHPA-ALTTKGYGVGMKELF 477 (1326)
Q Consensus 407 ~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~~-~~~~~~~~~s~~~~~ 477 (1326)
++.+...+.+.......+ ...+.+.+.|++.. .++..+.... +....+ ..+. ......+..+++.|+
T Consensus 317 dv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~ 392 (659)
T PLN03211 317 DLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQF 392 (659)
T ss_pred HHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHH
Confidence 998754321100000111 01123333443211 1111111000 000000 0000 001122456899999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchhhHHHHHHHHHHHH-hhhHHHHHHhhcch
Q 046656 478 KANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTTF-NGMSDISMTVAKLP 556 (1326)
Q Consensus 478 ~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~~~~~~~~~~ 556 (1326)
..+++|.++. +|+......|+++.+++|+++|++||+.+ ..+.+.+.|++||.+++..+ ..+..+.....+++
T Consensus 393 ~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~ 466 (659)
T PLN03211 393 SILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERA 466 (659)
T ss_pred HHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999888 78887788999999999999999999874 23356678999999877655 44566677778999
Q ss_pred hhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Q 046656 557 IFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNM 636 (1326)
Q Consensus 557 vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~ 636 (1326)
+|+||+..++|++++|++++.+.++|+.++.+++|++++|||+|+.+++++||.+++++++...++++++.+++++++++
T Consensus 467 v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~ 546 (659)
T PLN03211 467 IFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDA 546 (659)
T ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCCc-----cccccCCCcchhhHHhhc
Q 046656 637 IVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSW-----RKFTTNSTESLGVQVLKS 711 (1326)
Q Consensus 637 ~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~g~~~L~~ 711 (1326)
.+|+.+++++++++++|+||+++ +||+||+|++|+||+.|++++++.|||.+.+. .|.........+..++..
T Consensus 547 ~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~ 624 (659)
T PLN03211 547 KKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE 624 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh
Confidence 99999999999999999999996 79999999999999999999999999976432 332111000011112222
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046656 712 RGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLN 747 (1326)
Q Consensus 712 ~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~ 747 (1326)
..+. ....|.+++++++++++|.++.+++|++.+
T Consensus 625 ~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 625 DVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 235788999999999999999999987654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-79 Score=757.20 Aligned_cols=582 Identities=32% Similarity=0.525 Sum_probs=490.3
Q ss_pred CcceEEEeccEEEEEEecCcCcCCCchhhHHHHHHHHhhhhhhcccccccceeecceeEEEeCceEEEEecCCCCChhHH
Q 046656 87 PKVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTL 166 (1326)
Q Consensus 87 p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTL 166 (1326)
..++++|+|+++++... ..+.+++|+||||.++|||++||+||+|||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTL 72 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTL 72 (613)
T ss_pred ccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHHH
Confidence 46788999999986432 0145789999999999999999999999999999
Q ss_pred HHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhC
Q 046656 167 LLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAG 246 (1326)
Q Consensus 167 L~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1326)
|++|+|+..+..+++|+|++||++.+....++.+|||.|+|.++|++||+|++.|+|.++.+.+ +.
T Consensus 73 L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~------- 138 (613)
T KOG0061|consen 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LS------- 138 (613)
T ss_pred HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CC-------
Confidence 9999999987667899999999887776778899999999999999999999999999875432 11
Q ss_pred CCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCC
Q 046656 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGL 326 (1326)
Q Consensus 247 i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgL 326 (1326)
.++...++|.+++.|||++|+||++|+...||+||||||||+||..|+.+|+||+||||||||
T Consensus 139 -----------------~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 139 -----------------KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred -----------------HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 123456789999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHH
Q 046656 327 DSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQ 406 (1326)
Q Consensus 327 D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~ 406 (1326)
|+.++.++++.|+++|+. ++|+|++||||+.+++++||++++|++|+++|+|+++++.+||++.|++||+..||+||+.
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l 280 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLL 280 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHH
Confidence 999999999999999986 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcc--ccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHH
Q 046656 407 EVTSRK--DQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISRE 484 (1326)
Q Consensus 407 ~~~s~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~ 484 (1326)
++.+.. .+..... .......+.++..+...+............+ ........++|.|+..+.+|.
T Consensus 281 ~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 281 DLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEKSLSTSK-----KVEIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhhhccccc-----ccccccCCcHHHHHHHHHHHH
Confidence 987742 1110000 0000001111100000000000000000000 000111678999999999999
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchhhHHHHHHHHHHHHhhhH-HHHHHhhcchhhHhhhc
Q 046656 485 FLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTTFNGMS-DISMTVAKLPIFYKQRG 563 (1326)
Q Consensus 485 ~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~k~r~ 563 (1326)
+..++|++.++..|+++.+.+++++|.+||+.+.+.. ....+.|++||.+.+..+..+. .+.....++++|.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999854433 2235788888888888776666 46777889999999999
Q ss_pred cCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 046656 564 LRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFG 643 (1326)
Q Consensus 564 ~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~ 643 (1326)
.+.|+.++|++++.+.++|+.++.+++|..++|||+|+.++..+|+.+++..++...++.++..+++++.++...|.+++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCCcccccc--CCCcchhhHHhhccCcccccchh
Q 046656 644 SFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTT--NSTESLGVQVLKSRGFFPHAFWY 721 (1326)
Q Consensus 644 ~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~L~~~~~~~~~~~~ 721 (1326)
+++++.+++++||+++.+.+|.||.|+.|+|+..|++|+++.|||.+....|... ..+...|.+++...++... ..
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SF 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--cc
Confidence 9999999999999999999999999999999999999999999999744444433 2345678889998888655 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046656 722 WIGLGAMIGFVLLFNIGFTLSLTFLN 747 (1326)
Q Consensus 722 w~~~~~lig~~~~f~i~~~l~l~~l~ 747 (1326)
|.++.++.++.++|.++.++++++..
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988743
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=761.52 Aligned_cols=485 Identities=34% Similarity=0.609 Sum_probs=417.3
Q ss_pred CceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-eeEEEEEEcC
Q 046656 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGNITISG 885 (1326)
Q Consensus 807 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g 885 (1326)
+..+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 457899999988754321 3478999999999999999999999999999999999998764 6899999999
Q ss_pred ccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 886 YPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 886 ~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
++.....+++.+|||.|+|.+.|.+||+|++.|+|.+|.+...++++++++|+++++.++|.+++|+++|.++.+|+|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88877888999999999999999999999999999999999889999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|||||+||.+|+.||+||||||||||||+.++..++++|++++++|+|||||+|||+.++++.||++++|.+ |+++|+|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 6999999
Q ss_pred CCCCChhhHHHHHhhcCcchhhHHhhhccCcccccCCCCccceEEEeccch---hhhhc-cC--CHHHHhhccHHHHHHH
Q 046656 1046 PLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTT---KELAL-GI--DFTNIYKHSDLYRRNK 1119 (1326)
Q Consensus 1046 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~v~~~~---~~~~~-~~--~~~~~~~~s~~~~~~~ 1119 (1326)
+. +++.+||.++ |.| ||+++|||||++|+++.. ++... .. ...+.++..+...+..
T Consensus 254 ~~----~~~~~ff~~~-------------G~~-~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (613)
T KOG0061|consen 254 SP----RELLEFFSSL-------------GFP-CPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTL 315 (613)
T ss_pred CH----HHHHHHHHhC-------------CCC-CCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhH
Confidence 96 7899999943 654 999999999999998842 11100 00 0111111011111111
Q ss_pred HHHHHhcCCCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHH
Q 046656 1120 ALIEELSKPAPDSQDIYFPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLF 1199 (1326)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~r~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~ 1199 (1326)
. ...+......+ .+.....+||.|+..+++|.+++.+|+|.+...|+++.+++|+++|++||+.+++ ..+++
T Consensus 316 ~---~~~~~~~~~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~ 387 (613)
T KOG0061|consen 316 E---ALEKSLSTSKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQ 387 (613)
T ss_pred H---HHhhhcccccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHH
Confidence 0 11111111111 1112278999999999999999999999999999999999999999999999874 45666
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchHHhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHH
Q 046656 1200 NAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAA 1279 (1326)
Q Consensus 1200 ~~~g~~~~~~~~~~~~~~~~v~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~ 1279 (1326)
++.|.+|+.+.++.+..+...++.|+.||++|.||+.+|+|+..+|++|++++++|+.++.+++|++|+|||+|++++..
T Consensus 388 ~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~ 467 (613)
T KOG0061|consen 388 NRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLS 467 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchH
Confidence 99999999998888888887789999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccCCC
Q 046656 1280 KFFCLLY--------FTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIPRP 1326 (1326)
Q Consensus 1280 ~f~~~~~--------~~~~g~~~~~~~p~~~~a~~~~~~~~~~~~lf~G~~i~~~ 1326 (1326)
.|+.|+. ...+|++++++.||...|..+++++...+++|+||+++.+
T Consensus 468 ~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~ 522 (613)
T KOG0061|consen 468 RFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFD 522 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcc
Confidence 8774432 2357899999999999999999999999999999999853
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-78 Score=758.74 Aligned_cols=491 Identities=27% Similarity=0.449 Sum_probs=405.2
Q ss_pred CceEEEecccceeccchhh--------------hcc--ccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 807 PYSLTFDDVTYSADMPKEM--------------KLK--GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 807 ~~~l~~~~v~~~~~~~~~~--------------~~~--~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
++.+.|.|++|.++..... +.. ....+++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999988654210 001 112345789999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc
Q 046656 871 RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950 (1326)
Q Consensus 871 ~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~ 950 (1326)
+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 876544689999999886432 3456899999999999999999999988776554555666677899999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhc
Q 046656 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFD 1030 (1326)
Q Consensus 951 ~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1030 (1326)
|+.+|....++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99998776788999999999999999999999999999999999999999999999988899999999999877899999
Q ss_pred eeeEEecCcEEEEEcCCCCChhhHHHHHhhcCcchhhHHhhhccCcccccCCCCccceEEEeccchhhhh-----cc---
Q 046656 1031 ELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELA-----LG--- 1102 (1326)
Q Consensus 1031 ~v~~l~~gg~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~v~~~~~~~~-----~~--- 1102 (1326)
++++|++ |+++|.|+. +++++||+ ++ |. +||+++|||||++|+++...+.. ..
T Consensus 276 ~iilL~~-G~iv~~G~~----~~~~~~f~------------~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~ 336 (659)
T PLN03211 276 SVLVLSE-GRCLFFGKG----SDAMAYFE------------SV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNV 336 (659)
T ss_pred eEEEecC-CcEEEECCH----HHHHHHHH------------HC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchH
Confidence 9999985 799999996 68999999 44 54 59999999999999987532100 00
Q ss_pred -CCHHHHhhccHHHHHHHHHHHHh--cCCCCC-----CCCCC--CCCcccCcHHHHHHHHHHHHHHHhhcChhHHHHHHH
Q 046656 1103 -IDFTNIYKHSDLYRRNKALIEEL--SKPAPD-----SQDIY--FPTWYSRSFFMQFLACLWKQHWSYWRNPPYNAVRFL 1172 (1326)
Q Consensus 1103 -~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~-----~~~~~--~~~~~~~~~~~q~~~~~~r~~~~~~R~~~~~~~r~~ 1172 (1326)
....+.|+++. .++..+.++.. ...... ..+.. ..+.+..+|++|+.+|++|++++ ||++.+..+|++
T Consensus 337 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~ 414 (659)
T PLN03211 337 KQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVF 414 (659)
T ss_pred HHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHH
Confidence 11234453211 11111111111 110000 00000 11235678999999999999988 999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhcccchHHhHHHHHhhcCCCCCChHHHHHHHHHH
Q 046656 1173 FTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQPVVAVERTVYYREKGAGMYSGMSYAFAQVMI 1252 (1326)
Q Consensus 1173 ~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~er~vf~rE~~~~~Y~~~~y~~a~~~~ 1252 (1326)
+++++|+++|++||+++ ..+++++.|++|++++++++.+++.++|.|+.||+||+||+.+|+|++.+|++|++++
T Consensus 415 ~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~ 489 (659)
T PLN03211 415 QVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVG 489 (659)
T ss_pred HHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHH
Confidence 99999999999999985 4678999999999998988888778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccccccHHHHHHHH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhcccccC
Q 046656 1253 EIPYVLVLSVVYGVIVYAMIGFEWTAAKFFCLL--------YFTFYGMMTVAMTPNHNIAAIVSILFFGLWNVFSGFVIP 1324 (1326)
Q Consensus 1253 e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~--------~~~~~g~~~~~~~p~~~~a~~~~~~~~~~~~lf~G~~i~ 1324 (1326)
|+|+.++.+++|++|+|||+|+++++.+||.|+ ....+|+++++++||..+|+.++++++.++++|+||+|+
T Consensus 490 elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~ 569 (659)
T PLN03211 490 DLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH 569 (659)
T ss_pred HHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 999999999999999999999999999988442 224578999999999999999999999999999999985
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-76 Score=789.00 Aligned_cols=594 Identities=23% Similarity=0.410 Sum_probs=494.2
Q ss_pred CCCcceEEEeccEEEEEEecCcCcCCCchhhHHHHHHHHhhhhhhcccccccceeecceeEEEeCceEEEEecCCCCChh
Q 046656 85 ELPKVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKT 164 (1326)
Q Consensus 85 ~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKS 164 (1326)
+...+.+.|+|+++.++..... +....+++++++|+|||+.++||++++|+||||||||
T Consensus 862 ~~~~~~~~~~~v~y~v~~~~~~---------------------~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKT 920 (1470)
T PLN03140 862 PFTPLAMSFDDVNYFVDMPAEM---------------------KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKT 920 (1470)
T ss_pred CCCcceEEEEEEEEEEccCccc---------------------cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHH
Confidence 4445678999999997543110 0011223456799999999999999999999999999
Q ss_pred HHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHH
Q 046656 165 TLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKE 244 (1326)
Q Consensus 165 TLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 244 (1326)
|||++|+|+.++. ..+|+|.+||++..+...++.+|||+|+|.|++.+||+|||.|++.++.+.. ..+
T Consensus 921 TLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~~---- 988 (1470)
T PLN03140 921 TLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VSK---- 988 (1470)
T ss_pred HHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CCH----
Confidence 9999999997642 4589999999887543345679999999999999999999999876542111 000
Q ss_pred hCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCC
Q 046656 245 AGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISN 324 (1326)
Q Consensus 245 ~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEpts 324 (1326)
.+....++++++.+||++++|+.+|+..+++|||||||||+||++|+.+|++|||||||+
T Consensus 989 --------------------~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTs 1048 (1470)
T PLN03140 989 --------------------EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048 (1470)
T ss_pred --------------------HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 111234788999999999999999988888999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC-CeEEEEcCh----hhHHHHHHhc-CC-CCCC
Q 046656 325 GLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD-GQIVYQGPC----ELVLDFFESM-GF-KCPE 397 (1326)
Q Consensus 325 gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~-G~iv~~G~~----~~~~~~F~~l-G~-~~p~ 397 (1326)
|||+.++..+++.|+++++ .+.|+|+++||+..+++++||++++|++ |+++|+|+. +++.+||+++ |+ +||+
T Consensus 1049 gLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~ 1127 (1470)
T PLN03140 1049 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKE 1127 (1470)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCC
Confidence 9999999999999999876 4778888888888789999999999996 899999996 6899999998 66 4999
Q ss_pred CCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhc---CcCCCCCCCCccccCCCCCCcHH
Q 046656 398 RKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELR---TPLDKSKSHPAALTTKGYGVGMK 474 (1326)
Q Consensus 398 ~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~s~~ 474 (1326)
..|||||+.++++..... ....++.+.|+.++.+++..+.++ .+.... +.......|..+++
T Consensus 1128 ~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~ 1192 (1470)
T PLN03140 1128 KYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA---SDLYFATQYSQSTW 1192 (1470)
T ss_pred CCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCc---cccccCccccCCHH
Confidence 999999999987643211 112357778888776665544332 221111 11112356889999
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchhhHHHHHHHHHHHHhhhHH-HHHHhh
Q 046656 475 ELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTTFNGMSD-ISMTVA 553 (1326)
Q Consensus 475 ~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~-~~~~~~ 553 (1326)
.|++.|++|+++.++|++.....|+++.+++|+++|++||+.+.+..+..+.+...|++|+++++..++.... ++....
T Consensus 1193 ~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~ 1272 (1470)
T PLN03140 1193 GQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAV 1272 (1470)
T ss_pred HHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998665555565667899999888877765544 345556
Q ss_pred cchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046656 554 KLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAG 633 (1326)
Q Consensus 554 ~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~ 633 (1326)
+|++|+|||..++|++++|++++.+.++|+.++.+++|.+++|||+||.++++.||.+++++++...++.+++.++++++
T Consensus 1273 eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~ 1352 (1470)
T PLN03140 1273 ERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLT 1352 (1470)
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCCccccccCC-CcchhhHH-hhc
Q 046656 634 RNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNS-TESLGVQV-LKS 711 (1326)
Q Consensus 634 ~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~-~~~~g~~~-L~~ 711 (1326)
++..+|..++++++.++++|+||+++.++||+||+|+||+||+.|++++++.|||.+....|.+++. ....+.++ +..
T Consensus 1353 p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1432 (1470)
T PLN03140 1353 PNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDH 1432 (1470)
T ss_pred CcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999987765544321 12234455 567
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 046656 712 RGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQF 749 (1326)
Q Consensus 712 ~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~ 749 (1326)
+|+... |.|.+++++++++++|.+++++++++++..
T Consensus 1433 ~g~~~~--~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1433 YGYDPD--FMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred cCcCcc--cccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 788644 679999999999999999999999998753
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-76 Score=744.80 Aligned_cols=471 Identities=31% Similarity=0.514 Sum_probs=410.1
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-eeEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGNITISGYPKKQETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
+++.+|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987643 358999999998765567788999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG-ESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~-~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
|+||+.|++.++.+.....++++++++++++.++|.+++|+.+|.++ .++||||||||++||+||+.+|++|||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877766777778889999999999999999999754 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCChhhHHHHHhhcCcchhhHHh
Q 046656 991 GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQLMPMHVTFIFM 1070 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 1070 (1326)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|+. +++.+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~---------- 260 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSD---------- 260 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHH----------
Confidence 99999999999999999888999999999998889999999999984 799999996 678999993
Q ss_pred hhccCcccccCCCCccceEEEeccchhhhhc-----cCCHHHHhhccHHHHHHHHHHHHhcCCCCC---CCCCCCCCccc
Q 046656 1071 KAISGVEKIKDGYNPATWMLEVTSTTKELAL-----GIDFTNIYKHSDLYRRNKALIEELSKPAPD---SQDIYFPTWYS 1142 (1326)
Q Consensus 1071 ~~~~g~~~~~~~~npa~~~l~v~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 1142 (1326)
+ |. +||++.|||||++|+++...+... ..++.+.|++|+.+++..+.+.....+.++ ..+....++|.
T Consensus 261 --~-g~-~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (617)
T TIGR00955 261 --L-GH-PCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYN 336 (617)
T ss_pred --c-CC-CCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccC
Confidence 3 54 599999999999999875432211 124667787777766554443322211111 11111235688
Q ss_pred CcHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhccc
Q 046656 1143 RSFFMQFLACLWKQHWSYWRNPPYNAVRFLFTTAIALTFGTMFWDMGTKTKQNQDLFNAMGSMYTAVFFIGAQLCSSVQP 1222 (1326)
Q Consensus 1143 ~~~~~q~~~~~~r~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 1222 (1326)
.+++.|+..|++|+++++||||.+...|+++.+++|+++|++||+++++ +++++++.|++|++++++++.++..+.+
T Consensus 337 ~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~~g~lf~~~~~~~f~~~~~~~~ 413 (617)
T TIGR00955 337 ASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGALFLFLTNMTFQNVFPVIN 413 (617)
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999874 6788999999999998888887777789
Q ss_pred chHHhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHH--------HHHHHHHH
Q 046656 1223 VVAVERTVYYREKGAGMYSGMSYAFAQVMIEIPYVLVLSVVYGVIVYAMIGFEWTAAKFFCLLY--------FTFYGMMT 1294 (1326)
Q Consensus 1223 ~~~~er~vf~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~--------~~~~g~~~ 1294 (1326)
.++.||.+|+||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++..||.|++ ...+|+++
T Consensus 414 ~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i 493 (617)
T TIGR00955 414 VFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLI 493 (617)
T ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998874422 23578999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhcccccCC
Q 046656 1295 VAMTPNHNIAAIVSILFFGLWNVFSGFVIPR 1325 (1326)
Q Consensus 1295 ~~~~p~~~~a~~~~~~~~~~~~lf~G~~i~~ 1325 (1326)
++++||..+|..++++++.++++|+||++|+
T Consensus 494 ~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~ 524 (617)
T TIGR00955 494 SCAFSSTSMALTVGPPFVIPFLLFGGFFINS 524 (617)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHhhcccCh
Confidence 9999999999999999999999999999986
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=740.27 Aligned_cols=766 Identities=21% Similarity=0.279 Sum_probs=437.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
.+.|+|||+++++|++++|+||.||||||||.+|.|+++.. +|+|.++| .+|||+|++|.+ +.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~-ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQ-NGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhh-CCcHH
Confidence 34899999999999999999999999999999999999865 99999999 589999998855 78999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
|||.|+..+. .+||+.+.+.|..+++..+ |+.+..|.||++++ +|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~--------------------------------Lp~GD~TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEI--------------------------------LPFGDLTEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhh--------------------------------cCCCCcceecCCcc-CC
Confidence 9999997764 4677777777766655433 45577899997655 79
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEE
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 376 (1326)
|||||||+++|||+++++||++||+|.|++|+++..+|++.+... .++++|+|.++| .-+..+.+|.|++|++|+|.
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~--~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRG--LLRGKTVILVTH-QLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHh--hhcCCEEEEEeC-chhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999999999999999999999877632 345566666677 55788999999999999999
Q ss_pred EEcChhhHHH---HHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhcCc
Q 046656 377 YQGPCELVLD---FFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTP 453 (1326)
Q Consensus 377 ~~G~~~~~~~---~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~ 453 (1326)
..|+++|+.+ .|+++ ...... ..+.. .....+.......+. +. +.........+.
T Consensus 722 ~~Gty~el~~~~~~~~~l-~~~~~~------------~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~---- 779 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-AHEEES------------EQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEK---- 779 (1381)
T ss_pred cccCHHHHHhcchhHHHH-hhccch------------hhccc---cccccccccccccch-hh-hhhhhhcccccc----
Confidence 9999999973 23332 000000 00000 000000000000000 00 000000000000
Q ss_pred CCCCCCCCcccc---CCCCCCcHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHH-HHHHHhhhhccccCCCCc--c---
Q 046656 454 LDKSKSHPAALT---TKGYGVGMKELFKANISREFLLIKRNSFVYI-FKLIQLST-MALVSSTLFFRANMNKDS--V--- 523 (1326)
Q Consensus 454 ~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~-~~~~~~~~-~ali~g~~f~~~~~~~~~--~--- 523 (1326)
....+....... ....+.-.|...+ .+........... +-+.+... ...+.+..|+..|.+... .
T Consensus 780 ~~~~~~~~~~~~~~ee~~~G~v~~~vY~-----~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~ 854 (1381)
T KOG0054|consen 780 SKDEKEEEDKLVQEEERETGKVSWSVYK-----KYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT 854 (1381)
T ss_pred cccccchhhHHHHHHHHhcCEeeHHHHH-----HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Confidence 000000000000 0001111111111 1111101111111 11112222 233445556555543321 1
Q ss_pred CCcchhhHHH----HHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeecc
Q 046656 524 SDGGIYIGAM----FFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAI 599 (1326)
Q Consensus 524 ~~~~~~~g~l----ff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~ 599 (1326)
.+...|.+.. +...++.++.++......+ ...+..+..+.+.+++.|++|++++
T Consensus 855 ~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l------------~aS~~Lh~~ml~~Ilrapm~FFdtT---------- 912 (1381)
T KOG0054|consen 855 VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGL------------KASRKLHDKLLNSILRAPMSFFDTT---------- 912 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhCcchhcCCC----------
Confidence 1222333322 2222222222221111111 1122234557788999999998765
Q ss_pred CccccHHHHHHHHH---------HHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHhccccCccchhhH
Q 046656 600 GFDPNIGRLFKQLL---------LLLFINQMASALFRFIAAA----GRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNG 666 (1326)
Q Consensus 600 gl~~~~~~ff~~~l---------~~~l~~~~~~~lf~~i~~~----~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~ 666 (1326)
..||+++++. +.+.+..+...+..+++.+ ..++.....+.++.++.+++..-|.-..+++.+
T Consensus 913 ----P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkR- 987 (1381)
T KOG0054|consen 913 ----PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKR- 987 (1381)
T ss_pred ----CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 4677777762 2222222222222222221 222222222222222222222222222222211
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhcCCCccccccCCCcchhhHHhh--ccC-cccccchhHHHHH--HHHHHHHHHHHHHHH
Q 046656 667 WIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLK--SRG-FFPHAFWYWIGLG--AMIGFVLLFNIGFTL 741 (1326)
Q Consensus 667 ~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~--~~~-~~~~~~~~w~~~~--~lig~~~~f~i~~~l 741 (1326)
.-....||++-.+..-+..--.-+.+...... ...-...++ ... |.......|.++- .+...++++..++.+
T Consensus 988 -LesitRSPi~sh~~Etl~GlsTIRAf~~~~rf--~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~v 1064 (1381)
T KOG0054|consen 988 -LESITRSPIYSHFSETLQGLSTIRAFGKEERF--IQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAV 1064 (1381)
T ss_pred -hhhcccchHHHhHHHHhcCcceeeeccccHHH--HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112355544443221110000000000000 000000000 000 0000111244432 121121111111111
Q ss_pred HHHhccccCCCceeeeccc--------------cccccccccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCC
Q 046656 742 SLTFLNQFEKPQAVILEES--------------ESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEP 807 (1326)
Q Consensus 742 ~l~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1326)
+..-.. ..+..+....+ .....++.+.+++|..+|.....+.+..... .+++..+|..
T Consensus 1065 -l~~~~~-~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~-----~~pp~~WP~~- 1136 (1381)
T KOG0054|consen 1065 -LLPSGL-ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEE-----SRPPPSWPSK- 1136 (1381)
T ss_pred -HccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcC-----CCCCCCCCCC-
Confidence 111000 01111111111 0112234445555666555433321111000 0011123322
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
-.|+|+|++..|.. +...||||||++|+|||++||||++|||||||+++|.+... +.+|+|.|||.+
T Consensus 1137 G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvd 1203 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVD 1203 (1381)
T ss_pred CeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCee
Confidence 26899998766631 23569999999999999999999999999999999999876 468999999999
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccccccccc------CCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG------LPG 958 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg------~~~ 958 (1326)
+.+ .++|++++.+||++.++.. |+|+|| |+..+..++.++++||..+|.+...+..+ .++
T Consensus 1204 I~~igL~dLRsrlsIIPQdPvLFsG-TvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~eg 1272 (1381)
T KOG0054|consen 1204 ISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEG 1272 (1381)
T ss_pred cccccHHHHHhcCeeeCCCCceecC-cccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCC
Confidence 875 3578889999999987753 666665 56666777889999999999765433221 135
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.++|.||||.+|+||||+++++||+|||+|+++|+++...|+++||+..+ +||||+++|+.+. ...+|||+||++
T Consensus 1273 G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T--Vmd~DrVlVld~- 1348 (1381)
T KOG0054|consen 1273 GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT--VMDSDRVLVLDA- 1348 (1381)
T ss_pred CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch--hhhcCeEEEeeC-
Confidence 568999999999999999999999999999999999999999999999775 7999999999873 456899999996
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++.+|++
T Consensus 1349 G~v~EfdsP 1357 (1381)
T KOG0054|consen 1349 GRVVEFDSP 1357 (1381)
T ss_pred CeEeecCCh
Confidence 799999987
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-74 Score=719.35 Aligned_cols=777 Identities=22% Similarity=0.280 Sum_probs=420.6
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIG 211 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 211 (1326)
++..||+|+|+.|++|+.++|+|||||||||++++|.+.++|+ +|+|.++|.++.++.. +.++|.|.|+|.+|
T Consensus 364 pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF- 439 (1228)
T KOG0055|consen 364 PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF- 439 (1228)
T ss_pred CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhh-
Confidence 3567999999999999999999999999999999999999998 9999999999987754 46899999999765
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
..||+|||.|+... ...+...+++.. .+..--+..|++..||.||++
T Consensus 440 ~~tI~eNI~~G~~d-------------------------at~~~i~~a~k~--------ana~~fi~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 440 ATTIRENIRYGKPD-------------------------ATREEIEEAAKA--------ANAHDFILKLPDGYDTLVGER 486 (1228)
T ss_pred cccHHHHHhcCCCc-------------------------ccHHHHHHHHHH--------ccHHHHHHhhHHhhcccccCC
Confidence 67999999996421 111111111111 111122334788999999987
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+ .|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|.+.. .++|+|+ +.|....+.+ +|+|++|+
T Consensus 487 g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~I~v~~ 561 (1228)
T KOG0055|consen 487 GV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADKIAVME 561 (1228)
T ss_pred CC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCEEEEEE
Confidence 66 499999999999999999999999999999999999999999998864 3667766 6777766666 99999999
Q ss_pred CCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHH--HHhcCccccchhhhccCCCcccCCHHHHHHHHHhch----hhhh
Q 046656 372 DGQIVYQGPCELVLDFFESMGFKCPERKSVADFL--QEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFH----VGQK 445 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l--~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~~~ 445 (1326)
+|+|++.|+++|+... ....++.+ |+.....+. ..+..+.. ++.....+.+. ....
T Consensus 562 ~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~~~~~-------~~~~~s~~~s~~~~~~~~~ 623 (1228)
T KOG0055|consen 562 EGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEEESLK-------EERSRSLKSSSSSPSLSRG 623 (1228)
T ss_pred CCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccccchh-------hhhhhccccccccccccCC
Confidence 9999999999999752 01112221 222111110 00000000 00000000000 0000
Q ss_pred -HHHhhc-CcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhh---ccccCCC
Q 046656 446 -LTDELR-TPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLF---FRANMNK 520 (1326)
Q Consensus 446 -~~~~l~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f---~~~~~~~ 520 (1326)
...... ...+.+...... .......++++.++.+.. +|....-......++-....+.+++.+.++ +..+.+
T Consensus 624 ~~~~~~~~~~~~~e~~~~~~-~~~~~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~- 700 (1228)
T KOG0055|consen 624 SNRSNLLSVKPEGEDPEEPV-SEEDEKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD- 700 (1228)
T ss_pred cccccccccccccccccccc-ccccccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChH-
Confidence 000000 000000000000 111123445555443322 222211111111122222233344444332 211111
Q ss_pred CccCCcchhhHHHHHHHHHHHH--hhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeec
Q 046656 521 DSVSDGGIYIGAMFFAVIMTTF--NGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYA 598 (1326)
Q Consensus 521 ~~~~~~~~~~g~lff~~~~~~~--~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~ 598 (1326)
..........++|.++....+ +.+......+..-.+-.|-| ..+.+.+++.++.+++-
T Consensus 701 -~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R---------~~~F~~ll~qd~~wFD~---------- 760 (1228)
T KOG0055|consen 701 -ELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLR---------SMMFRALLRQEVGWFDD---------- 760 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHcCCCcccCC----------
Confidence 011111112222222211111 00000000000000000000 11122233333333221
Q ss_pred cCccccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH------HHHhccccCccchhhHH
Q 046656 599 IGFDPNIGRLFKQLLL-----LLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVF------FAFGGFVLSQDDINNGW 667 (1326)
Q Consensus 599 ~gl~~~~~~ff~~~l~-----~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~------~l~~Gf~i~~~~i~~~~ 667 (1326)
-..+ ++...++.. -.++..-...+...++++...+.+|..+++=+.++. +.++++...
T Consensus 761 --~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~-------- 829 (1228)
T KOG0055|consen 761 --PENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQK-------- 829 (1228)
T ss_pred --Cccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 1122 444444421 111222222333333344444444544444322222 222222110
Q ss_pred HHHHhhCH---HHHHHHHHHHHHhcCCCccccccCCCcchhhHHhhccCc---cc----ccchhHHHHHHHHHHHHH---
Q 046656 668 IWGYWCSP---MMYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLKSRGF---FP----HAFWYWIGLGAMIGFVLL--- 734 (1326)
Q Consensus 668 ~w~~~isp---~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~---~~----~~~~~w~~~~~lig~~~~--- 734 (1326)
.++.-.+. -.|.-.+-+.+|-...- .++.. .+....+++.+.- .+ .....|.+++.-+...++
T Consensus 830 ~~~~~~~~~~~~~~~ea~~iA~eai~NI-rTV~a---l~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~ 905 (1228)
T KOG0055|consen 830 KFLKGFSKDDKKAYEEASKIAIEAVSNI-RTVAA---LCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFV 905 (1228)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhH-HHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00111111111111000 00000 0000001100000 00 011234443333322222
Q ss_pred HHHHHHHHHHhccccC-CCceeeec---c--------------ccccccccccCCcccccccCCCCCCCCCCCccccCCC
Q 046656 735 FNIGFTLSLTFLNQFE-KPQAVILE---E--------------SESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQP 796 (1326)
Q Consensus 735 f~i~~~l~l~~l~~~~-~~~~~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1326)
+.+.++.+...+.... .+..+... . ++..+.......+...-+. ++.. +..
T Consensus 906 ~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr---~~~i--------~~~ 974 (1228)
T KOG0055|consen 906 YALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDR---KPTI--------DPD 974 (1228)
T ss_pred HHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcC---CCCC--------CCC
Confidence 2233333333222110 00000000 0 0000000000000000000 0000 000
Q ss_pred ccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCe
Q 046656 797 KKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 876 (1326)
Q Consensus 797 ~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~ 876 (1326)
.+.+...|...-.++|+||++.||..+ ..+||+|+|++|++|+.+||||||||||||.+.+|-+.+. +
T Consensus 975 ~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p 1042 (1228)
T KOG0055|consen 975 STSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--P 1042 (1228)
T ss_pred CCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--C
Confidence 011111222233699999999998643 4679999999999999999999999999999999998776 5
Q ss_pred eEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHc-------CC
Q 046656 877 ISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV-------EL 946 (1326)
Q Consensus 877 ~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-------~l 946 (1326)
..|.|.|||++++. ..+|+++|.|.|+|.++. -|++||+.|+. . +.+.+ .+.++++.. +|
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~----eIi~Aak~ANaH~FI~sL 1112 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEE----EIIEAAKLANAHNFISSL 1112 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHH----HHHHHHHHhhhHHHHhcC
Confidence 69999999998865 346789999999999886 59999999971 1 13332 244555544 34
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHH
Q 046656 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIF 1026 (1326)
Q Consensus 947 ~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1026 (1326)
.+-.|+.+|..|. .||||||||++||||+++||+||||||+||.||+++.+.|+++|.+.. .|||.|+++|++| ..
T Consensus 1113 P~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TI 1188 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TI 1188 (1228)
T ss_pred cCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hh
Confidence 5557888887655 699999999999999999999999999999999999999999999965 5899999999987 46
Q ss_pred HHhceeeEEecCcEEEEEcCC
Q 046656 1027 EAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1027 ~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
+.+|.|.++++ |+++..|+.
T Consensus 1189 qnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1189 QNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred hcCCEEEEEEC-CEEEecccH
Confidence 88999999995 799999985
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-71 Score=738.19 Aligned_cols=223 Identities=28% Similarity=0.414 Sum_probs=192.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +++.+|+|||+.|++||++||+|+||||||||+++|+|... +.+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 4788999877631 12569999999999999999999999999999999999887 4589999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+++|+.++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 42 2245679999999999999999999998776653 3344445678899999999998888875 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 67788999999995 79999998
Q ss_pred CCCChhhHHHHH
Q 046656 1047 LGSNSSDLISYL 1058 (1326)
Q Consensus 1047 ~~~~~~~~~~~f 1058 (1326)
. +++.+.|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 6 4554444
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-73 Score=706.84 Aligned_cols=563 Identities=25% Similarity=0.392 Sum_probs=468.9
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 212 (1326)
+.+++++|+||+|.++||.+|||||+|||||||||++|+|+.... -++|+|.+||++.++...+|.+|||.|+|.|.++
T Consensus 800 qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 800 QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 346788999999999999999999999999999999999997643 6899999999999876778999999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||||.|.|+|.++.+.+ +.. ++..+.+|++++.|+|++++|.+||+..
T Consensus 879 ~TVrESL~fSA~LRlp~~-------v~~------------------------~ek~~yVe~Vi~lleL~~~~daiVG~~G 927 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKE-------VSD------------------------EEKYEYVEEVIELLELKEYADALVGLPG 927 (1391)
T ss_pred cchHHHHHHHHHHcCCCc-------CCH------------------------HHHHHHHHHHHHHhCchhhhhhhccCCC
Confidence 999999999998875422 111 2233568999999999999999999877
Q ss_pred ccCCChhhhHHHHHHHHhhcCC-ccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 293 VRGISGGQKKRLTTGEMMVGPA-LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~-~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.|||..||||++||-.|+.+| .||||||||||||+.++..|++.+|++++ .|.+++|+||||+.++++.||++++|+
T Consensus 928 -~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLk 1005 (1391)
T KOG0065|consen 928 -SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLK 1005 (1391)
T ss_pred -CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHh
Confidence 999999999999999999999 99999999999999999999999999998 689999999999999999999999996
Q ss_pred -CCeEEEEcCh----hhHHHHHHhcC-CCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhh
Q 046656 372 -DGQIVYQGPC----ELVLDFFESMG-FKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQK 445 (1326)
Q Consensus 372 -~G~iv~~G~~----~~~~~~F~~lG-~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 445 (1326)
+|++||.||. +.+++|||+.| .+||...|||||..|+.+...+.+ ...++++.|+++..+++
T Consensus 1006 rGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~ 1073 (1391)
T KOG0065|consen 1006 RGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKR 1073 (1391)
T ss_pred cCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHH
Confidence 6899999986 44667999987 999999999999999987643321 12378899999988877
Q ss_pred HHHhhc---CcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCc
Q 046656 446 LTDELR---TPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDS 522 (1326)
Q Consensus 446 ~~~~l~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~ 522 (1326)
..++++ .+... ..........|..|++.|++.|++|++...||++.....|++..++.++++|..||+.+.+
T Consensus 1074 ~~e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~--- 1148 (1391)
T KOG0065|consen 1074 NKELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHN--- 1148 (1391)
T ss_pred HHHHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCc---
Confidence 766543 33332 1223334556899999999999999999999999999999999999999999999999843
Q ss_pred cCCcchhhHHHHHHHHHHHHhhhH-HHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCc
Q 046656 523 VSDGGIYIGAMFFAVIMTTFNGMS-DISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGF 601 (1326)
Q Consensus 523 ~~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl 601 (1326)
.++.++.+|++|.++++...+-.. .....-.++-+++|||..+.|+..+|.++..++++|+.++.+++|.+++|+++||
T Consensus 1149 ~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF 1228 (1391)
T KOG0065|consen 1149 VQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGF 1228 (1391)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccc
Confidence 455566788888777665443322 3334445788999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHH
Q 046656 602 DPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQN 681 (1326)
Q Consensus 602 ~~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~ 681 (1326)
..++.+++.+++..++.......++.++.+++|+..+|..+.++++.++.+|+|++++++.||.||+|+||+||+.|..+
T Consensus 1229 ~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~ 1308 (1391)
T KOG0065|consen 1229 YWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLE 1308 (1391)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccccccC-------CCcchhhHHhhccC----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046656 682 AIVANEFFGHSWRKFTTN-------STESLGVQVLKSRG----FFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQ 748 (1326)
Q Consensus 682 al~~nef~~~~~~~~~~~-------~~~~~g~~~L~~~~----~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~ 748 (1326)
+++...+.+..-.|...+ ...+.|......++ +..+... ....+.+++.+.+..++.+..+|.+.
T Consensus 1309 gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1309 GLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred HHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHHH
Confidence 999999987766554322 22344544443344 3222110 00112233455556666666666543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-70 Score=732.79 Aligned_cols=559 Identities=26% Similarity=0.374 Sum_probs=455.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
++++|+|||+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||+++.. ..++.+|||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 4679999999999999999999999999999999999987422237999999998753 346789999999999999999
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
+||+.|+++++.+.. ..+ .+....++++++.+||++++|+.+|+.. .+
T Consensus 854 ~E~L~~~a~l~~~~~-------~~~------------------------~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKS-------VSK------------------------SEKMEYVEEVIKLLEMESYADAVVGVPG-EG 901 (1394)
T ss_pred HHHHHHHHHhCCCCC-------CCH------------------------HHHHHHHHHHHHHcCChhhCCCeeCCCC-CC
Confidence 999999887653211 000 1122346889999999999999999643 48
Q ss_pred CChhhhHHHHHHHHhhcCCc-cceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC-
Q 046656 296 ISGGQKKRLTTGEMMVGPAL-ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG- 373 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~-illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G- 373 (1326)
|||||||||+||++|+.+|+ +|||||||+|||+.++..+++.|+++++ .+.|+|+++||+...+++.||+|++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999875 46788888888887788999999999987
Q ss_pred eEEEEcCh----hhHHHHHHhcCC-CCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHH
Q 046656 374 QIVYQGPC----ELVLDFFESMGF-KCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTD 448 (1326)
Q Consensus 374 ~iv~~G~~----~~~~~~F~~lG~-~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 448 (1326)
+++|+|+. +++.+||++.|+ +||+..|||||+.++.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999876432110 01234555665554444333
Q ss_pred hhc---CcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCC
Q 046656 449 ELR---TPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSD 525 (1326)
Q Consensus 449 ~l~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~ 525 (1326)
+++ .+...............|..+++.|++.+++|.++..+|++.....|+++.+++|+++|++||+.+.+. .+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~---~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---HH
Confidence 221 111111000011122468899999999999999999999999999999999999999999999987543 34
Q ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHhhcchh-hHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCcccc
Q 046656 526 GGIYIGAMFFAVIMTTFNGMSDISMTVAKLPI-FYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPN 604 (1326)
Q Consensus 526 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~v-f~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~ 604 (1326)
.+.+.|++|+.+++..+.....++..+.++++ ++|||..++|+.++|++++.+.++|+.++.+++|.+++|||+||.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 56678888887766554433444455566666 48999999999999999999999999999999999999999999887
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHH
Q 046656 605 IGR-------LFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMM 677 (1326)
Q Consensus 605 ~~~-------ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~ 677 (1326)
+.. |+.++++.++...++.+++.++++++++..+|..++++++.++++|+||+++.++||.||+|++|+||+.
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 755 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccccc-------------------------------CC---C----cchhhHHhhccCcccccc
Q 046656 678 YAQNAIVANEFFGHSWRKFTT-------------------------------NS---T----ESLGVQVLKSRGFFPHAF 719 (1326)
Q Consensus 678 y~~~al~~nef~~~~~~~~~~-------------------------------~~---~----~~~g~~~L~~~~~~~~~~ 719 (1326)
|++++++.|||.+....|... +. + ...|.++|..+++...
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~-- 1363 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYS-- 1363 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCccc--
Confidence 999999999999887655321 00 0 2367788887776544
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046656 720 WYWIGLGAMIGFVLLFNIGFTLSLTFL 746 (1326)
Q Consensus 720 ~~w~~~~~lig~~~~f~i~~~l~l~~l 746 (1326)
..|.++++++++++++ ++.++.+.|.
T Consensus 1364 ~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1364 GRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred ccccchhhhhHHHHHH-HHHHHhhheE
Confidence 3599999999998888 5556666654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-68 Score=718.29 Aligned_cols=211 Identities=22% Similarity=0.309 Sum_probs=178.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+. +.+++|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 6999999998841 22369999999999999999999999999999999999877 4689999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
++ ..+|+.++||||++.++.. |+||||.+.. ..+ ++.++++++..++.+. .|+.+|..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 64 4567889999999998865 9999997531 112 3457888888887643 34555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999975 4899999999986 4567999999995
Q ss_pred cEEEEEcCCC
Q 046656 1039 GQEIYVGPLG 1048 (1326)
Q Consensus 1039 g~~~~~G~~~ 1048 (1326)
|+++..|+..
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 7999999863
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=612.28 Aligned_cols=474 Identities=27% Similarity=0.356 Sum_probs=364.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC-CceeeEEEECCccCCCCCc-------cceEEEEccCC-
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS-LKVSGRVTYNGHDMNEFVP-------QRTAAYISQHD- 207 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 207 (1326)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999876 3468999999987644332 26799999994
Q ss_pred -CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 208 -VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 208 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
.+-|-+||.+.+.=..+.++... ..+....+.++|+.+||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 45566899888876554443211 12234456788999999987654
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
+.+++.|||||||||.||+||+.+|++|++||||++||+.++.+|++.|+++.+. .++.++.++|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 6789999999999999999999999999999999999999999999999999764 578888899999999999999
Q ss_pred EEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhH
Q 046656 367 IILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKL 446 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 446 (1326)
|+||.+|++++.|+++++.. .|.+ ||. +.+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~--------~p~h-------------------------pYT-----------------~~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILS--------NPQH-------------------------PYT-----------------RGL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHh--------ccCC-------------------------ccc-----------------HHH
Confidence 99999999999999998853 1111 110 000
Q ss_pred HHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCc
Q 046656 447 TDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDG 526 (1326)
Q Consensus 447 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~ 526 (1326)
.+
T Consensus 255 l~------------------------------------------------------------------------------ 256 (539)
T COG1123 255 LA------------------------------------------------------------------------------ 256 (539)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHH
Q 046656 527 GIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIG 606 (1326)
Q Consensus 527 ~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~ 606 (1326)
..|.....+
T Consensus 257 ---------------------------a~p~~~~~~-------------------------------------------- 265 (539)
T COG1123 257 ---------------------------AVPRLGDEK-------------------------------------------- 265 (539)
T ss_pred ---------------------------hCCCccccc--------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHH
Q 046656 607 RLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVAN 686 (1326)
Q Consensus 607 ~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~n 686 (1326)
T Consensus 266 -------------------------------------------------------------------------------- 265 (539)
T COG1123 266 -------------------------------------------------------------------------------- 265 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccccccc
Q 046656 687 EFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLD 766 (1326)
Q Consensus 687 ef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 766 (1326)
.
T Consensus 266 --------~----------------------------------------------------------------------- 266 (539)
T COG1123 266 --------I----------------------------------------------------------------------- 266 (539)
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred cccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEe
Q 046656 767 NRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFR 846 (1326)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~ 846 (1326)
. .. . ... + .+ ...-++++|++..+..+..+. +...+...+++||||+++
T Consensus 267 -----~-~~-------~--------~~~-~------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~ 315 (539)
T COG1123 267 -----I-RL-------P--------RRG-P------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLR 315 (539)
T ss_pred -----c-cc-------c--------ccc-c------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEec
Confidence 0 00 0 000 0 00 011345666655554322110 000134579999999999
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC--C---cccccceEEEeecCC--CCCCCCCHHHHHHHH
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK--K---QETFTRISGYCEQND--IHSPLVTVYESLLYS 919 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~ 919 (1326)
+||++||+|+||||||||.++|+|+.++ .+|.|.++|.+. + ....++.+-+++|++ .+.|.+||++.+.-.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ep 393 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP 393 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhH
Confidence 9999999999999999999999999874 689999999762 1 123455677888876 567999999999876
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 046656 920 AWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998 (1326)
Q Consensus 920 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~ 998 (1326)
...... ....++++++.++++.++|.+ +.++.. .+||||||||++|||||+.+|++|++|||||.||+..+.
T Consensus 394 L~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa 466 (539)
T COG1123 394 LRIHGG--GSGAERRARVAELLELVGLPPEFLDRYP-----HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQA 466 (539)
T ss_pred Hhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCc-----hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHH
Confidence 543322 224566678999999999986 455554 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 999 IVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 999 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
.|.++|+++.++ |.|.|++|||.+ -+.+.||||++|.+ |++|..||.
T Consensus 467 ~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 467 QVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 999999999865 999999999986 46778999999995 799999974
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=714.34 Aligned_cols=210 Identities=21% Similarity=0.291 Sum_probs=177.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+. +.+++|+|+|++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5899999998841 22469999999999999999999999999999999999887 4689999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
.+ ..+|+.++||||++.+++. |++|||.+.. +.+ ++.++++++..++.+. .|+.+|..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 54 4567889999999998874 9999996531 122 3447888888888654 34555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999875 4899999999985 4567999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 799999986
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=704.13 Aligned_cols=210 Identities=18% Similarity=0.227 Sum_probs=178.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 6999999998852 12359999999999999999999999999999999999877 4689999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
++ ..+|+.++||||++.++.. |+||||.... +.+ ++.++++++..++.+. .|+.+|..
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 64 3567889999999999875 9999995211 122 3447888888888654 35555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~- 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK- 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999875 4899999999975 4667899999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 1495 G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 GEVAEFGAP 1503 (1522)
T ss_pred CEEEEECCH
Confidence 799999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-65 Score=629.76 Aligned_cols=464 Identities=20% Similarity=0.287 Sum_probs=352.1
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ ..+|+|.++|.++..... ++.++||+|++.+
T Consensus 15 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (506)
T PRK13549 15 FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL 93 (506)
T ss_pred eCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEecccc
Confidence 34457999999999999999999999999999999999999861 128999999998754332 3569999999888
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.|+......+. .+ . .+....++++++.+||++..+..
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~-~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-- 140 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGI-MD------Y------------------------DAMYLRAQKLLAQLKLDINPATP-- 140 (506)
T ss_pred CCCCcHHHHhhhcccccccCC-cC------H------------------------HHHHHHHHHHHHHcCCCCCcccc--
Confidence 999999999998653211000 00 0 00112356789999998766644
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+++|+.++|+..++.++||+|++
T Consensus 141 ---~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvi~~tH~~~~~~~~~d~v~~ 215 (506)
T PRK13549 141 ---VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA--HGIACIYISHKLNEVKAISDTICV 215 (506)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhcCEEEE
Confidence 457999999999999999999999999999999999999999999999854 355677789999999999999999
Q ss_pred ecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHh
Q 046656 370 LSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDE 449 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 449 (1326)
|++|++++.|+.+++.. .+..+.+
T Consensus 216 l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~------------ 239 (506)
T PRK13549 216 IRDGRHIGTRPAAGMTE--------------------------------------------DDIITMM------------ 239 (506)
T ss_pred EECCEEeeecccccCCH--------------------------------------------HHHHHHh------------
Confidence 99999998886542200 0000000
Q ss_pred hcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchh
Q 046656 450 LRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIY 529 (1326)
Q Consensus 450 l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~ 529 (1326)
. +
T Consensus 240 ----------------------------------------------------------------~--~------------ 241 (506)
T PRK13549 240 ----------------------------------------------------------------V--G------------ 241 (506)
T ss_pred ----------------------------------------------------------------h--C------------
Confidence 0 0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHH
Q 046656 530 IGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLF 609 (1326)
Q Consensus 530 ~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff 609 (1326)
.+
T Consensus 242 -------------------------~~----------------------------------------------------- 243 (506)
T PRK13549 242 -------------------------RE----------------------------------------------------- 243 (506)
T ss_pred -------------------------cC-----------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhc
Q 046656 610 KQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFF 689 (1326)
Q Consensus 610 ~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~ 689 (1326)
.+.
T Consensus 244 -----------------------------------------------------~~~------------------------ 246 (506)
T PRK13549 244 -----------------------------------------------------LTA------------------------ 246 (506)
T ss_pred -----------------------------------------------------ccc------------------------
Confidence 000
Q ss_pred CCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeecccccccccccc
Q 046656 690 GHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRI 769 (1326)
Q Consensus 690 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 769 (1326)
. .
T Consensus 247 -------------------------------------------------------~---~-------------------- 248 (506)
T PRK13549 247 -------------------------------------------------------L---Y-------------------- 248 (506)
T ss_pred -------------------------------------------------------c---c--------------------
Confidence 0 0
Q ss_pred CCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEeCCe
Q 046656 770 GGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGV 849 (1326)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge 849 (1326)
. .. .. ... ...++++|+++.++.. +++.+|+|+||+|++||
T Consensus 249 ----~--------~~--------~~-~~~--------~~~l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge 289 (506)
T PRK13549 249 ----P--------RE--------PH-TIG--------EVILEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGE 289 (506)
T ss_pred ----c--------cc--------cc-CCC--------CceEEEecCccccccc----------cccccccceeeEEcCCc
Confidence 0 00 00 000 0136677777655210 12359999999999999
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCCCCHHHHHHHHHHh
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE----TFTRISGYCEQND---IHSPLVTVYESLLYSAWL 922 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~~Tv~E~l~f~~~l 922 (1326)
++||+|+||||||||+++|+|..++ +.+|+|.++|.++... ..++.+||++|+. .+++.+||.||+.+....
T Consensus 290 ~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (506)
T PRK13549 290 ILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD 368 (506)
T ss_pred EEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence 9999999999999999999998752 2589999999875321 1234689999985 467789999999875321
Q ss_pred hccC--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 046656 923 RLRT--EVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999 (1326)
Q Consensus 923 r~~~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~ 999 (1326)
.... ..+....++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 443 (506)
T PRK13549 369 RFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443 (506)
T ss_pred hhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 1110 012333445689999999996 56677664 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCC
Q 046656 1000 VMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSN 1050 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~ 1050 (1326)
+++.|++++++|+|||++|||++ ++.+.||++++|++ |+++..|+..+.
T Consensus 444 l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 444 IYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccC
Confidence 99999999888999999999986 67788999999986 789999987543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-65 Score=683.10 Aligned_cols=216 Identities=19% Similarity=0.319 Sum_probs=179.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-------------
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------- 875 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------------- 875 (1326)
.++|+||+|+|+.. ++.++|+|+||+|+||+++||+|+||||||||+++|.|...+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 69999999998531 1246999999999999999999999999999999999987641
Q ss_pred ---------------------------------------eeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 046656 876 ---------------------------------------YISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 876 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
+.+|+|++||.++.. ..+++.+|||+|++.++. .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 148999999998754 457889999999998874 7999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-------LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 986 (1326)
|||.|+. .+.+. +.++++++..++.+ -.|+.+|..| ..||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 12222 34677777777654 3467777543 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEecC---cE-EEEEcCC
Q 046656 987 EPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQ-EIYVGPL 1047 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g---g~-~~~~G~~ 1047 (1326)
||||+||+++++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 35899999999975 56789999999973 66 5578885
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=625.99 Aligned_cols=454 Identities=20% Similarity=0.311 Sum_probs=348.8
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (501)
T PRK10762 14 FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNL 90 (501)
T ss_pred eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhc
Confidence 33457999999999999999999999999999999999999987 9999999988753221 3469999999888
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.|+..........+ . .+....++++++.+||++..+..
T Consensus 91 ~~~~tv~e~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-- 138 (501)
T PRK10762 91 IPQLTIAENIFLGREFVNRFGRID------W------------------------KKMYAEADKLLARLNLRFSSDKL-- 138 (501)
T ss_pred cCCCcHHHHhhhccccccccCccC------H------------------------HHHHHHHHHHHHHcCCCCCccCc--
Confidence 999999999998643211000000 0 00112356779999998766644
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++.++||+|++
T Consensus 139 ---~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~ 213 (501)
T PRK10762 139 ---VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTV 213 (501)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 456999999999999999999999999999999999999999999999854 3 55677789999999999999999
Q ss_pred ecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHh
Q 046656 370 LSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDE 449 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 449 (1326)
|++|+++..|+.+++.. ++..+.+
T Consensus 214 l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~------------ 237 (501)
T PRK10762 214 FRDGQFIAEREVADLTE--------------------------------------------DSLIEMM------------ 237 (501)
T ss_pred EeCCEEEEecCcCcCCH--------------------------------------------HHHHHHh------------
Confidence 99999998776542200 0000000
Q ss_pred hcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchh
Q 046656 450 LRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIY 529 (1326)
Q Consensus 450 l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~ 529 (1326)
+
T Consensus 238 ----------------------------------------------------------------~--------------- 238 (501)
T PRK10762 238 ----------------------------------------------------------------V--------------- 238 (501)
T ss_pred ----------------------------------------------------------------c---------------
Confidence 0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHH
Q 046656 530 IGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLF 609 (1326)
Q Consensus 530 ~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff 609 (1326)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK10762 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhc
Q 046656 610 KQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFF 689 (1326)
Q Consensus 610 ~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~ 689 (1326)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK10762 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeecccccccccccc
Q 046656 690 GHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRI 769 (1326)
Q Consensus 690 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 769 (1326)
+.....
T Consensus 239 ~~~~~~-------------------------------------------------------------------------- 244 (501)
T PRK10762 239 GRKLED-------------------------------------------------------------------------- 244 (501)
T ss_pred CCCccc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEeCCe
Q 046656 770 GGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGV 849 (1326)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge 849 (1326)
. . .. . .. +. .+..++++|++. .+|+|+||+|++||
T Consensus 245 -~--~--------~~-----~--~~-~~--------~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge 279 (501)
T PRK10762 245 -Q--Y--------PR-----L--DK-AP--------GEVRLKVDNLSG------------------PGVNDVSFTLRKGE 279 (501)
T ss_pred -c--c--------cc-----c--cc-CC--------CCcEEEEeCccc------------------CCcccceEEEcCCc
Confidence 0 0 00 0 00 00 011356677652 26999999999999
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCCCCHHHHHHHHHHh
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE----TFTRISGYCEQND---IHSPLVTVYESLLYSAWL 922 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~~Tv~E~l~f~~~l 922 (1326)
+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++ .+++.+||.|++.+....
T Consensus 280 ~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 357 (501)
T PRK10762 280 ILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALR 357 (501)
T ss_pred EEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhh
Confidence 999999999999999999999876 4589999999876421 1345689999995 467889999999875321
Q ss_pred hcc---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 046656 923 RLR---TEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998 (1326)
Q Consensus 923 r~~---~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~ 998 (1326)
... ........++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~ 432 (501)
T PRK10762 358 YFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKK 432 (501)
T ss_pred hhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHH
Confidence 110 0122233345688999999995 56777664 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCC
Q 046656 999 IVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSN 1050 (1326)
Q Consensus 999 ~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~ 1050 (1326)
.+.+.|++++++|+|||++||++. ++.+.||++++|++ |++++.|+..+.
T Consensus 433 ~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 482 (501)
T PRK10762 433 EIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence 999999999878999999999986 67788999999985 789999987543
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-65 Score=629.30 Aligned_cols=461 Identities=21% Similarity=0.276 Sum_probs=349.5
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
++.+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~ 91 (510)
T PRK09700 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSV 91 (510)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccc
Confidence 34457999999999999999999999999999999999999887 9999999988765432 2469999999888
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.++..... ..+.. .... ..+....++.+++.+||++..+..
T Consensus 92 ~~~~tv~e~l~~~~~~~~--~~~~~-~~~~------------------------~~~~~~~~~~~l~~~gl~~~~~~~-- 142 (510)
T PRK09700 92 IDELTVLENLYIGRHLTK--KVCGV-NIID------------------------WREMRVRAAMMLLRVGLKVDLDEK-- 142 (510)
T ss_pred cCCCcHHHHhhhcccccc--ccccc-cccC------------------------HHHHHHHHHHHHHHcCCCCCcccc--
Confidence 999999999987542100 00000 0000 001122356789999998766644
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++. . +++|+.++|+..++.++||+|++
T Consensus 143 ---~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~ 217 (510)
T PRK09700 143 ---VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTV 217 (510)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999865 3 55677789999999999999999
Q ss_pred ecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHh
Q 046656 370 LSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDE 449 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 449 (1326)
|++|++++.|+++++.. . +..+.
T Consensus 218 l~~G~i~~~g~~~~~~~---------------~-----------------------------~~~~~------------- 240 (510)
T PRK09700 218 MKDGSSVCSGMVSDVSN---------------D-----------------------------DIVRL------------- 240 (510)
T ss_pred EECCEEeeecchhhCCH---------------H-----------------------------HHHHH-------------
Confidence 99999999887653310 0 00000
Q ss_pred hcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchh
Q 046656 450 LRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIY 529 (1326)
Q Consensus 450 l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~ 529 (1326)
. . +... .
T Consensus 241 ~---------------------------------------------------------------~--~~~~---~----- 247 (510)
T PRK09700 241 M---------------------------------------------------------------V--GREL---Q----- 247 (510)
T ss_pred h---------------------------------------------------------------c--CCCc---c-----
Confidence 0 0 0000 0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHH
Q 046656 530 IGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLF 609 (1326)
Q Consensus 530 ~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff 609 (1326)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhc
Q 046656 610 KQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFF 689 (1326)
Q Consensus 610 ~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~ 689 (1326)
+
T Consensus 248 -------------------------------------------------~------------------------------ 248 (510)
T PRK09700 248 -------------------------------------------------N------------------------------ 248 (510)
T ss_pred -------------------------------------------------c------------------------------
Confidence 0
Q ss_pred CCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeecccccccccccc
Q 046656 690 GHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRI 769 (1326)
Q Consensus 690 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 769 (1326)
.. . .
T Consensus 249 --~~---~-------------------~---------------------------------------------------- 252 (510)
T PRK09700 249 --RF---N-------------------A---------------------------------------------------- 252 (510)
T ss_pred --cc---c-------------------c----------------------------------------------------
Confidence 00 0 0
Q ss_pred CCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEeCCe
Q 046656 770 GGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGV 849 (1326)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge 849 (1326)
. . . . ... .. .+..++++|+++.+ ..+|+|+||+|++||
T Consensus 253 --~-~--------~---~----~~~-~~--------~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge 290 (510)
T PRK09700 253 --M-K--------E---N----VSN-LA--------HETVFEVRNVTSRD---------------RKKVRDISFSVCRGE 290 (510)
T ss_pred --c-c--------c---c----ccc-CC--------CCcEEEEeCccccC---------------CCcccceeEEEcCCc
Confidence 0 0 0 0 000 00 01136778877532 128999999999999
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecC---CCCCCCCCHHHHHHHHHHh
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE----TFTRISGYCEQN---DIHSPLVTVYESLLYSAWL 922 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~---~~~~~~~Tv~E~l~f~~~l 922 (1326)
+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+ ..+++.+||+|++.+....
T Consensus 291 ~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (510)
T PRK09700 291 ILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSL 368 (510)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccc
Confidence 999999999999999999999876 4589999999875321 224568999998 4577889999999875321
Q ss_pred h---ccC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 923 R---LRT--E-VDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 923 r---~~~--~-~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+ ... . ......++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~ 443 (510)
T PRK09700 369 KDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443 (510)
T ss_pred ccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHH
Confidence 1 000 1 11222335678999999996 67777764 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
++..+++.|++++++|.|||++|||+. ++.+.||++++|++ |+++..++.
T Consensus 444 ~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 444 AKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 999999999999878999999999986 67788999999986 688888865
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=680.25 Aligned_cols=210 Identities=24% Similarity=0.279 Sum_probs=178.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 6999999998842 22459999999999999999999999999999999999887 4689999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
.. ..+++.+|||||++.++.. |++|||... .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~- 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG- 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC-
Confidence 54 4578899999999988864 999999531 1222 3458899999988754 35556653
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 959 ESGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+.+||||||||+||||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH 1519 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 457999999999999999996 89999999999999999999999999865 4799999999975 5678999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 1520 -G~VvE~Gt~ 1528 (1560)
T PTZ00243 1520 -GAVAEMGSP 1528 (1560)
T ss_pred -CEEEEECCH
Confidence 799999986
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=679.79 Aligned_cols=209 Identities=20% Similarity=0.261 Sum_probs=177.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 6999999998852 23469999999999999999999999999999999999874 489999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
.. ..+++.++||||++.+++. |+||||.... .. .++.++++++.++|.+. .|+.+|. +
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~ 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-G 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCcccccccccc-C
Confidence 64 3467889999999999874 9999994311 11 23458899999988653 3555554 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||+||||||+++|+||+||||||+||..+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~- 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG- 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999875 4799999999975 5567999999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|++
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 799999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-64 Score=631.24 Aligned_cols=490 Identities=20% Similarity=0.226 Sum_probs=354.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCC----------CCC------c-cce
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN----------EFV------P-QRT 199 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----------~~~------~-~~~ 199 (1326)
.++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|..++ ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 899999986431 111 1 136
Q ss_pred EEEEccCC--CCCCCCCHHHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHH
Q 046656 200 AAYISQHD--VHIGEMTVRETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLK 276 (1326)
Q Consensus 200 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (1326)
+|||+|++ .+++.+||+||+.++.+.. +.. + .+....++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------R------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHH
Confidence 99999987 5788899999999976532 110 0 011234567899
Q ss_pred HcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 046656 277 VLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356 (1326)
Q Consensus 277 ~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 356 (1326)
.+||.+..+ .-+..+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.++++.+. .+++|+.++|+
T Consensus 152 ~~gL~~~~~--~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~-~g~tvi~itHd 228 (623)
T PRK10261 152 QVRIPEAQT--ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE-MSMGVIFITHD 228 (623)
T ss_pred HCCCCChhh--HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh-cCCEEEEEcCC
Confidence 999964210 113456789999999999999999999999999999999999999999999998653 35567779999
Q ss_pred hhhHHhhCCeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHH
Q 046656 357 APETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEA 436 (1326)
Q Consensus 357 ~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~ 436 (1326)
..++.++||+|++|++|++++.|+++++.. .|.+....+++
T Consensus 229 l~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~------------------------------- 269 (623)
T PRK10261 229 MGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALL------------------------------- 269 (623)
T ss_pred HHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhh-------------------------------
Confidence 999999999999999999999998876521 01000000000
Q ss_pred HHhchhhhhHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccc
Q 046656 437 FQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRA 516 (1326)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~ 516 (1326)
... + +.
T Consensus 270 -----------~~~--~-------------------------------------------------------------~~ 275 (623)
T PRK10261 270 -----------AAV--P-------------------------------------------------------------QL 275 (623)
T ss_pred -----------hcc--C-------------------------------------------------------------cc
Confidence 000 0 00
Q ss_pred cCCCCccCCcchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeee
Q 046656 517 NMNKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTY 596 (1326)
Q Consensus 517 ~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y 596 (1326)
. . .... .. |
T Consensus 276 ~--~--~~~~---------------------------~~--------------------------~-------------- 284 (623)
T PRK10261 276 G--A--MKGL---------------------------DY--------------------------P-------------- 284 (623)
T ss_pred c--c--cccc---------------------------cC--------------------------C--------------
Confidence 0 0 0000 00 0
Q ss_pred eccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHH
Q 046656 597 YAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPM 676 (1326)
Q Consensus 597 ~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~ 676 (1326)
...+.
T Consensus 285 ----------------------------------------------------------------~~~~~----------- 289 (623)
T PRK10261 285 ----------------------------------------------------------------RRFPL----------- 289 (623)
T ss_pred ----------------------------------------------------------------ccccc-----------
Confidence 00000
Q ss_pred HHHHHHHHHHHhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceee
Q 046656 677 MYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVI 756 (1326)
Q Consensus 677 ~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~ 756 (1326)
. ..
T Consensus 290 -------------------~--------------------------------------------------------~~-- 292 (623)
T PRK10261 290 -------------------I--------------------------------------------------------SL-- 292 (623)
T ss_pred -------------------c--------------------------------------------------------cc--
Confidence 0 00
Q ss_pred eccccccccccccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceE
Q 046656 757 LEESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLV 836 (1326)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 836 (1326)
.. . .. ..... .. . .. +....-++++|+++.++..... ... ....+.
T Consensus 293 -~~----------~---~~-------~~~~~---~~-~-~~------~~~~~~L~~~~l~~~y~~~~~~-~~~-~~~~~~ 338 (623)
T PRK10261 293 -EH----------P---AK-------QEPPI---EQ-D-TV------VDGEPILQVRNLVTRFPLRSGL-LNR-VTREVH 338 (623)
T ss_pred -cc----------c---cc-------cCccc---cc-c-cc------cCCCceEEEeeeEEEEcCCCcc-ccc-cCCceE
Confidence 00 0 00 00000 00 0 00 0001147888988776421000 000 001246
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc------cccceEEEeecCC--CCCC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE------TFTRISGYCEQND--IHSP 908 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~~~~ 908 (1326)
+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... .+++.++|++|++ .+++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 9999999999999999999999999999999999876 4589999999876321 2356799999996 5788
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 987 (1326)
.+||.|++.+...... ....++.++++.++|+.++|. +..++.++ .|||||||||+|||||+.+|+||||||
T Consensus 417 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-----~LSgGqrQRv~iAraL~~~p~llllDE 489 (623)
T PRK10261 417 RQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPH-----EFSGGQRQRICIARALALNPKVIIADE 489 (623)
T ss_pred CCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 8999999987643321 112334456789999999996 56666653 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 988 PTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 988 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||+.++..++++|++++++ |.|||++|||++ .+.+.+|++++|++ |++++.|+.
T Consensus 490 Pts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 490 AVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999765 899999999986 57788999999986 799999975
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=619.97 Aligned_cols=457 Identities=20% Similarity=0.268 Sum_probs=346.6
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
++.+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 21 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (510)
T PRK15439 21 YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL 97 (510)
T ss_pred eCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCcc
Confidence 34456999999999999999999999999999999999999987 9999999988754322 2459999999989
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.|+.... . +....++++++.+||++..+..
T Consensus 98 ~~~~tv~e~l~~~~~~~-------------~-------------------------~~~~~~~~~l~~~~l~~~~~~~-- 137 (510)
T PRK15439 98 FPNLSVKENILFGLPKR-------------Q-------------------------ASMQKMKQLLAALGCQLDLDSS-- 137 (510)
T ss_pred CCCCcHHHHhhcccccc-------------h-------------------------HHHHHHHHHHHHcCCCccccCC--
Confidence 99999999998853210 0 0012346678999998766644
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ . +.+|+.++|+..++.++||+|++
T Consensus 138 ---~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~ 212 (510)
T PRK15439 138 ---AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISV 212 (510)
T ss_pred ---hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999865 3 56677789999999999999999
Q ss_pred ecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHh
Q 046656 370 LSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDE 449 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 449 (1326)
|++|++++.|+++++... +.+ +.+..
T Consensus 213 l~~G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~---------- 238 (510)
T PRK15439 213 MRDGTIALSGKTADLSTD---------------DII-----------------------------QAITP---------- 238 (510)
T ss_pred EECCEEEEecChHHcCHH---------------HHH-----------------------------HHHhC----------
Confidence 999999999887654210 000 00000
Q ss_pred hcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchh
Q 046656 450 LRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIY 529 (1326)
Q Consensus 450 l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~ 529 (1326)
. ..... ...
T Consensus 239 -------~-----------------------------------------------------------~~~~~-~~~---- 247 (510)
T PRK15439 239 -------A-----------------------------------------------------------AREKS-LSA---- 247 (510)
T ss_pred -------c-----------------------------------------------------------ccccc-ccc----
Confidence 0 00000 000
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHH
Q 046656 530 IGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLF 609 (1326)
Q Consensus 530 ~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff 609 (1326)
.
T Consensus 248 -------------------------~------------------------------------------------------ 248 (510)
T PRK15439 248 -------------------------S------------------------------------------------------ 248 (510)
T ss_pred -------------------------c------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhc
Q 046656 610 KQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFF 689 (1326)
Q Consensus 610 ~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~ 689 (1326)
..
T Consensus 249 ------------------------------------------------------~~------------------------ 250 (510)
T PRK15439 249 ------------------------------------------------------QK------------------------ 250 (510)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred CCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeecccccccccccc
Q 046656 690 GHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRI 769 (1326)
Q Consensus 690 ~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 769 (1326)
.. ..+
T Consensus 251 ---~~-----------------~~~------------------------------------------------------- 255 (510)
T PRK15439 251 ---LW-----------------LEL------------------------------------------------------- 255 (510)
T ss_pred ---cc-----------------ccc-------------------------------------------------------
Confidence 00 000
Q ss_pred CCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEeCCe
Q 046656 770 GGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGV 849 (1326)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge 849 (1326)
. .. ....+. .+.-++++|++. .+|+|||++|++||
T Consensus 256 ----~--------~~-------~~~~~~--------~~~~l~~~~l~~------------------~~l~~isl~i~~Ge 290 (510)
T PRK15439 256 ----P--------GN-------RRQQAA--------GAPVLTVEDLTG------------------EGFRNISLEVRAGE 290 (510)
T ss_pred ----c--------cc-------ccccCC--------CCceEEEeCCCC------------------CCccceeEEEcCCc
Confidence 0 00 000000 011366777752 15899999999999
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCCCCHHHHHHHHHHh
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE----TFTRISGYCEQND---IHSPLVTVYESLLYSAWL 922 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~~Tv~E~l~f~~~l 922 (1326)
++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+. .+++.+|+.|++......
T Consensus 291 ~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~ 368 (510)
T PRK15439 291 ILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHN 368 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhh
Confidence 999999999999999999999876 4589999999876431 1234689999984 477888999998642111
Q ss_pred hccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 046656 923 RLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001 (1326)
Q Consensus 923 r~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~ 1001 (1326)
+..........++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|+||||||||+|||+.++..++
T Consensus 369 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~ 443 (510)
T PRK15439 369 RRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY 443 (510)
T ss_pred hhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHH
Confidence 1110011222335688999999997 66777764 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCC
Q 046656 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGS 1049 (1326)
Q Consensus 1002 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~ 1049 (1326)
+.|++++++|.|||++|||++ ++.+.||++++|++ |++++.|..++
T Consensus 444 ~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 444 QLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred HHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 999999878999999999987 67788999999985 79999887654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=617.68 Aligned_cols=465 Identities=20% Similarity=0.272 Sum_probs=348.8
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDV 208 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~ 208 (1326)
+++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|. ..+|+|.++|.++..... ++.++||+|++.
T Consensus 10 ~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 88 (500)
T TIGR02633 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELT 88 (500)
T ss_pred EeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccc
Confidence 334457999999999999999999999999999999999998761 128999999988764332 246999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++.+||+||+.++......+...+ . .+....++++++.+||++..+
T Consensus 89 ~~~~~tv~~~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~--- 135 (500)
T TIGR02633 89 LVPELSVAENIFLGNEITLPGGRMA------Y------------------------NAMYLRAKNLLRELQLDADNV--- 135 (500)
T ss_pred cCCCCcHHHHHHhhccccccccccC------H------------------------HHHHHHHHHHHHHcCCCCCcc---
Confidence 8999999999998643210000000 0 001123567899999976542
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. .+++|+.++|+..++.++||+|+
T Consensus 136 -~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~~~~~~~~d~i~ 212 (500)
T TIGR02633 136 -TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKLNEVKAVCDTIC 212 (500)
T ss_pred -cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHHHHhCCEEE
Confidence 133557999999999999999999999999999999999999999999999864 35667778999999999999999
Q ss_pred EecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHH
Q 046656 369 LLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTD 448 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 448 (1326)
+|++|++++.|+.+++.. .+.
T Consensus 213 ~l~~G~i~~~~~~~~~~~--------------------------------------------~~~--------------- 233 (500)
T TIGR02633 213 VIRDGQHVATKDMSTMSE--------------------------------------------DDI--------------- 233 (500)
T ss_pred EEeCCeEeeecCcccCCH--------------------------------------------HHH---------------
Confidence 999999987664321100 000
Q ss_pred hhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcch
Q 046656 449 ELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGI 528 (1326)
Q Consensus 449 ~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~ 528 (1326)
...
T Consensus 234 ---------------------------------------------------~~~-------------------------- 236 (500)
T TIGR02633 234 ---------------------------------------------------ITM-------------------------- 236 (500)
T ss_pred ---------------------------------------------------HHH--------------------------
Confidence 000
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHH
Q 046656 529 YIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRL 608 (1326)
Q Consensus 529 ~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f 608 (1326)
+ . ..+
T Consensus 237 ------------~----------~-~~~---------------------------------------------------- 241 (500)
T TIGR02633 237 ------------M----------V-GRE---------------------------------------------------- 241 (500)
T ss_pred ------------H----------h-Ccc----------------------------------------------------
Confidence 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHh
Q 046656 609 FKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEF 688 (1326)
Q Consensus 609 f~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef 688 (1326)
.+.
T Consensus 242 ------------------------------------------------------~~~----------------------- 244 (500)
T TIGR02633 242 ------------------------------------------------------ITS----------------------- 244 (500)
T ss_pred ------------------------------------------------------ccc-----------------------
Confidence 000
Q ss_pred cCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccccccccc
Q 046656 689 FGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNR 768 (1326)
Q Consensus 689 ~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~ 768 (1326)
. .
T Consensus 245 ----------~-------------------------------------------------~------------------- 246 (500)
T TIGR02633 245 ----------L-------------------------------------------------Y------------------- 246 (500)
T ss_pred ----------c-------------------------------------------------c-------------------
Confidence 0 0
Q ss_pred cCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEeCC
Q 046656 769 IGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPG 848 (1326)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~G 848 (1326)
. .. .. .. .+.-++++|+++.++. .+++.+|+|+||+|++|
T Consensus 247 -----~--------~~--------~~-~~--------~~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~G 286 (500)
T TIGR02633 247 -----P--------HE--------PH-EI--------GDVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRG 286 (500)
T ss_pred -----c--------cc--------cc-CC--------CCceEEEeCCcccccc----------cccccccccceeEEeCC
Confidence 0 00 00 00 0013667777765420 01235899999999999
Q ss_pred eEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc----ccccceEEEeecCC---CCCCCCCHHHHHHHHHH
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ----ETFTRISGYCEQND---IHSPLVTVYESLLYSAW 921 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~~Tv~E~l~f~~~ 921 (1326)
|+++|+||||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .+++.+||+|++.++..
T Consensus 287 e~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~ 365 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVL 365 (500)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhh
Confidence 99999999999999999999998752 248999999987642 12345689999995 47888999999987532
Q ss_pred hhcc--CCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 046656 922 LRLR--TEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998 (1326)
Q Consensus 922 lr~~--~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~ 998 (1326)
-... ........++.++++++.+++.+ ..++.++ .||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~ 440 (500)
T TIGR02633 366 KSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKY 440 (500)
T ss_pred hhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHH
Confidence 1110 11222334456889999999964 5666654 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 999 IVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 999 ~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
.+++.|++++++|.|||++|||++ ++.+.||++++|++ |+++..++..
T Consensus 441 ~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 441 EIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 999999999888999999999986 67788999999986 6888877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-64 Score=621.58 Aligned_cols=449 Identities=23% Similarity=0.311 Sum_probs=344.1
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc--CCCCceeeEEEECC----------------------
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL--DSSLKVSGRVTYNG---------------------- 188 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G---------------------- 188 (1326)
+++++.+|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++|
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (520)
T TIGR03269 9 KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVC 85 (520)
T ss_pred EECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccc
Confidence 334457999999999999999999999999999999999996 576 89999972
Q ss_pred -ccCC-------CC------CccceEEEEccC-CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhH
Q 046656 189 -HDMN-------EF------VPQRTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253 (1326)
Q Consensus 189 -~~~~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~ 253 (1326)
.++. .. ..++.++||+|+ +.+++.+||+||+.|+....+.. .
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~------------- 142 (520)
T TIGR03269 86 GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------G------------- 142 (520)
T ss_pred cccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------H-------------
Confidence 2210 00 013468999997 67888899999999865432210 0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHH
Q 046656 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFH 333 (1326)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~ 333 (1326)
.+....++++++.+||++..+. .+..|||||||||+||+||+.+|++|||||||+|||+.++..
T Consensus 143 -----------~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~ 206 (520)
T TIGR03269 143 -----------KEAVGRAVDLIEMVQLSHRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKL 206 (520)
T ss_pred -----------HHHHHHHHHHHHHcCChhhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHH
Confidence 0112235678999999876553 456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccc
Q 046656 334 IVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKD 413 (1326)
Q Consensus 334 i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~ 413 (1326)
+.+.|+++++.. +++|++++|+...+.++||+|++|++|++++.|+++++.+.+.
T Consensus 207 l~~~l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~------------------------ 261 (520)
T TIGR03269 207 VHNALEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM------------------------ 261 (520)
T ss_pred HHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH------------------------
Confidence 999999986533 5667778999999999999999999999998876543310000
Q ss_pred cchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChH
Q 046656 414 QRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSF 493 (1326)
Q Consensus 414 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~ 493 (1326)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHH
Q 046656 494 VYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYA 573 (1326)
Q Consensus 494 ~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~ 573 (1326)
.. .
T Consensus 262 ------------------------------~~-------------------~---------------------------- 264 (520)
T TIGR03269 262 ------------------------------EG-------------------V---------------------------- 264 (520)
T ss_pred ------------------------------hh-------------------c----------------------------
Confidence 00 0
Q ss_pred HHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Q 046656 574 LPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAF 653 (1326)
Q Consensus 574 la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~ 653 (1326)
T Consensus 265 -------------------------------------------------------------------------------- 264 (520)
T TIGR03269 265 -------------------------------------------------------------------------------- 264 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHH
Q 046656 654 GGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVL 733 (1326)
Q Consensus 654 ~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~ 733 (1326)
. .+.
T Consensus 265 -----~--~~~--------------------------------------------------------------------- 268 (520)
T TIGR03269 265 -----S--EVE--------------------------------------------------------------------- 268 (520)
T ss_pred -----h--hhc---------------------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHhccccCCCceeeeccccccccccccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEe
Q 046656 734 LFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFD 813 (1326)
Q Consensus 734 ~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 813 (1326)
.. . . . +. ...-++++
T Consensus 269 -----------------~~---------------------~--------~------~-----~~--------~~~~l~~~ 283 (520)
T TIGR03269 269 -----------------KE---------------------C--------E------V-----EV--------GEPIIKVR 283 (520)
T ss_pred -----------------cc---------------------c--------c------c-----CC--------CCceEEEe
Confidence 00 0 0 0 00 00136677
Q ss_pred cccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEc-Ccc---CC
Q 046656 814 DVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS-GYP---KK 889 (1326)
Q Consensus 814 ~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~---~~ 889 (1326)
|+++.++.. ..+.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+ ..
T Consensus 284 ~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 284 NVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred ccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcccccc
Confidence 887766310 0122469999999999999999999999999999999999876 458999996 532 11
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-----cccccccCCC
Q 046656 890 Q------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-----LRQSLVGLPG 958 (1326)
Q Consensus 890 ~------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~vg~~~ 958 (1326)
. ...++.+||++|++.+++.+||.|++.+...+. .+.+..++.++++++.++|.+ ..++.+
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---- 425 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP---- 425 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh----
Confidence 1 112456899999988888999999998754221 223333456889999999975 345554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+.+.+|++++|++
T Consensus 426 -~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~ 503 (520)
T TIGR03269 426 -DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD 503 (520)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 369999999999999999999999999999999999999999999999764 899999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 504 -G~i~~~g~~ 512 (520)
T TIGR03269 504 -GKIVKIGDP 512 (520)
T ss_pred -CEEEEECCH
Confidence 788888874
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=616.31 Aligned_cols=455 Identities=21% Similarity=0.294 Sum_probs=346.0
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC----ccceEEEEccCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV----PQRTAAYISQHDVHI 210 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 210 (1326)
+++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.++
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLV 91 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhcc
Confidence 3456999999999999999999999999999999999999887 999999998875322 135799999998889
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++......+. . .. .+....++.+++.+||++..+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~-~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~---- 136 (501)
T PRK11288 92 PEMTVAENLYLGQLPHKGGI-V------NR------------------------RLLNYEAREQLEHLGVDIDPDT---- 136 (501)
T ss_pred CCCCHHHHHHhcccccccCC-C------CH------------------------HHHHHHHHHHHHHcCCCCCcCC----
Confidence 99999999998532100000 0 00 0111235667899999765554
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. .+++|+.++|+..++.++||+|++|
T Consensus 137 -~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiiiitHd~~~~~~~~d~i~~l 213 (501)
T PRK11288 137 -PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA--EGRVILYVSHRMEEIFALCDAITVF 213 (501)
T ss_pred -chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4557999999999999999999999999999999999999999999999854 3566777899999999999999999
Q ss_pred cCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhHHHhh
Q 046656 371 SDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKLTDEL 450 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l 450 (1326)
++|+++..++..+. .+.++..+.
T Consensus 214 ~~G~i~~~~~~~~~-------------------------------------------~~~~~~~~~-------------- 236 (501)
T PRK11288 214 KDGRYVATFDDMAQ-------------------------------------------VDRDQLVQA-------------- 236 (501)
T ss_pred ECCEEEeecCcccc-------------------------------------------CCHHHHHHH--------------
Confidence 99999864421000 000000000
Q ss_pred cCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcchhh
Q 046656 451 RTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDGGIYI 530 (1326)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~~~~~ 530 (1326)
+.
T Consensus 237 --------------------------------------------------------------~~---------------- 238 (501)
T PRK11288 237 --------------------------------------------------------------MV---------------- 238 (501)
T ss_pred --------------------------------------------------------------hc----------------
Confidence 00
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHHHHHH
Q 046656 531 GAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIGRLFK 610 (1326)
Q Consensus 531 g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~ 610 (1326)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T PRK11288 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHHHhcC
Q 046656 611 QLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFG 690 (1326)
Q Consensus 611 ~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~nef~~ 690 (1326)
+
T Consensus 239 -------------------------------------------------------------------------------~ 239 (501)
T PRK11288 239 -------------------------------------------------------------------------------G 239 (501)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccccccccccC
Q 046656 691 HSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLDNRIG 770 (1326)
Q Consensus 691 ~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1326)
.... . . .
T Consensus 240 ~~~~----~-----------------~-----------------------------~----------------------- 246 (501)
T PRK11288 240 REIG----D-----------------I-----------------------------Y----------------------- 246 (501)
T ss_pred CCcc----c-----------------c-----------------------------c-----------------------
Confidence 0000 0 0 0
Q ss_pred CcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeE
Q 046656 771 GTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVL 850 (1326)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~ 850 (1326)
. .. +... .+..++++|+++. .+++|+|++|++||+
T Consensus 247 ---~--------~~---------~~~~--------~~~~l~~~~~~~~-----------------~~l~~isl~i~~Ge~ 281 (501)
T PRK11288 247 ---G--------YR---------PRPL--------GEVRLRLDGLKGP-----------------GLREPISFSVRAGEI 281 (501)
T ss_pred ---c--------cc---------ccCC--------CCcEEEEeccccC-----------------CcccceeEEEeCCcE
Confidence 0 00 0000 0113567777521 389999999999999
Q ss_pred EEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCCCCHHHHHHHHHHhh
Q 046656 851 TALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE----TFTRISGYCEQND---IHSPLVTVYESLLYSAWLR 923 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~~Tv~E~l~f~~~lr 923 (1326)
++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++.+.....
T Consensus 282 ~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 282 VGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred EEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 99999999999999999999876 4689999999875321 1235689999985 4788899999998753211
Q ss_pred ccC-C--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 046656 924 LRT-E--VDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999 (1326)
Q Consensus 924 ~~~-~--~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~ 999 (1326)
... . ......++.++++++.+++. +..++.++ .|||||||||+||++|+.+|+||||||||+|||+.++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 434 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHH
Confidence 100 0 11223345688999999994 66777764 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCCh
Q 046656 1000 VMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNS 1051 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~~ 1051 (1326)
+++.|++++++|.|||++|||++ ++.+.+|++++|++ |++++.|+.++.+
T Consensus 435 l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 484 (501)
T PRK11288 435 IYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQAT 484 (501)
T ss_pred HHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccCC
Confidence 99999999888999999999986 67788999999985 7899999876543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=619.06 Aligned_cols=466 Identities=22% Similarity=0.281 Sum_probs=346.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC--ceeeEEEECCccCCCCCc-------cceEEEEccCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL--KVSGRVTYNGHDMNEFVP-------QRTAAYISQHD 207 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 207 (1326)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 469999999999999999999999999999999999998620 138999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 208 V--HIGEMTVRETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 208 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
. +++.+||+|++.+..... +.. + .+....++++++.+||++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------R------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999988643221 100 0 01123356789999997521
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+ .-++.+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+.+||+++|+..++.++|
T Consensus 148 ~--~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~ 224 (529)
T PRK15134 148 K--RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVRKLA 224 (529)
T ss_pred H--HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHHHhc
Confidence 0 012455679999999999999999999999999999999999999999999998653 3456777899999999999
Q ss_pred CeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhh
Q 046656 365 DDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQ 444 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 444 (1326)
|+|++|++|++++.|+++++... |.. ...
T Consensus 225 dri~~l~~G~i~~~g~~~~~~~~--------~~~---------------------------------~~~---------- 253 (529)
T PRK15134 225 DRVAVMQNGRCVEQNRAATLFSA--------PTH---------------------------------PYT---------- 253 (529)
T ss_pred CEEEEEECCEEEEeCCHHHHhhC--------CCC---------------------------------HHH----------
Confidence 99999999999999887654210 000 000
Q ss_pred hHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccC
Q 046656 445 KLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVS 524 (1326)
Q Consensus 445 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~ 524 (1326)
+.+
T Consensus 254 --------------------------------------~~~--------------------------------------- 256 (529)
T PRK15134 254 --------------------------------------QKL--------------------------------------- 256 (529)
T ss_pred --------------------------------------HHH---------------------------------------
Confidence 000
Q ss_pred CcchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCcccc
Q 046656 525 DGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPN 604 (1326)
Q Consensus 525 ~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~ 604 (1326)
+. ..+
T Consensus 257 -----------------~~----------~~~------------------------------------------------ 261 (529)
T PRK15134 257 -----------------LN----------SEP------------------------------------------------ 261 (529)
T ss_pred -----------------HH----------hCc------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHH
Q 046656 605 IGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIV 684 (1326)
Q Consensus 605 ~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~ 684 (1326)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccccc
Q 046656 685 ANEFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNY 764 (1326)
Q Consensus 685 ~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~ 764 (1326)
. . .
T Consensus 262 -------~------~-----------------------------------------------~----------------- 264 (529)
T PRK15134 262 -------S------G-----------------------------------------------D----------------- 264 (529)
T ss_pred -------c------c-----------------------------------------------c-----------------
Confidence 0 0 0
Q ss_pred cccccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchh-hhccccccCceEeeeccee
Q 046656 765 LDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKE-MKLKGVHEDKLVLLNGVSG 843 (1326)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~-~~~~~~~~~~~~vL~~vs~ 843 (1326)
.. .. . .. .+.-++++|+++.++.... .+ + ..+.+.+|+|+||
T Consensus 265 ------~~----------~~---------~-~~--------~~~~l~~~~l~~~~~~~~~~~~--~-~~~~~~il~~isl 307 (529)
T PRK15134 265 ------PV----------PL---------P-EP--------ASPLLDVEQLQVAFPIRKGILK--R-TVDHNVVVKNISF 307 (529)
T ss_pred ------cc----------cc---------C-CC--------CCCcccccCcEEEeecCccccc--c-ccccceeeeccee
Confidence 00 00 0 00 0002456666665521000 00 0 0012469999999
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc------cccceEEEeecCC--CCCCCCCHHHH
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE------TFTRISGYCEQND--IHSPLVTVYES 915 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~~~~~~Tv~E~ 915 (1326)
+|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++... .+++.+||++|+. .+++.+||.|+
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~ 384 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI 384 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHH
Confidence 999999999999999999999999999863 489999999875321 1245689999996 46788999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
+.+....+.. ..+..+.++.++++++.++|. +..++.++ .|||||||||+|||+|+.+|++|||||||+|||+
T Consensus 385 l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 385 IEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPA-----EFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred HHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCc-----cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 9886432211 123334456788999999997 45666653 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 995 RAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 995 ~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
.++..+++.|++++++ |+|||++||++. ++.+.||++++|++ |+++..|+.
T Consensus 459 ~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 459 TVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 9999999999999865 899999999986 57788999999986 688988874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=605.74 Aligned_cols=456 Identities=18% Similarity=0.265 Sum_probs=344.8
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHD 207 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d 207 (1326)
.+++++++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++
T Consensus 6 ~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 6 KSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQEL 82 (491)
T ss_pred EEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence 3344567999999999999999999999999999999999999987 9999999988754321 35699999998
Q ss_pred CCCCCCCHHHHHHhhhh-hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 208 VHIGEMTVRETLAFSAR-CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
.+++.+||+||+.++.. ..+.. . .. .+....++.+++.+|+++..+.
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~--~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~ 130 (491)
T PRK10982 83 NLVLQRSVMDNMWLGRYPTKGMF--V------DQ------------------------DKMYRDTKAIFDELDIDIDPRA 130 (491)
T ss_pred ccccCCCHHHHhhcccccccccc--c------CH------------------------HHHHHHHHHHHHHcCCCCCccC
Confidence 88899999999988532 11100 0 00 0011235677899999876654
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
. +..|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++ .+.+|+.++|+.+++.++||+
T Consensus 131 ~-----~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 131 K-----VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE--RGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred c-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCE
Confidence 4 457999999999999999999999999999999999999999999999864 355667789999999999999
Q ss_pred EEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhhhH
Q 046656 367 IILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQKL 446 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 446 (1326)
|++|++|+++..|+++++.. .+..+.+
T Consensus 204 i~~l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------- 230 (491)
T PRK10982 204 ITILRDGQWIATQPLAGLTM--------------------------------------------DKIIAMM--------- 230 (491)
T ss_pred EEEEECCEEEeecChhhCCH--------------------------------------------HHHHHHH---------
Confidence 99999999998776532100 0000000
Q ss_pred HHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCc
Q 046656 447 TDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVSDG 526 (1326)
Q Consensus 447 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~~~ 526 (1326)
.
T Consensus 231 -------------------------------------------------------------------~------------ 231 (491)
T PRK10982 231 -------------------------------------------------------------------V------------ 231 (491)
T ss_pred -------------------------------------------------------------------h------------
Confidence 0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccccHH
Q 046656 527 GIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPNIG 606 (1326)
Q Consensus 527 ~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~ 606 (1326)
T Consensus 232 -------------------------------------------------------------------------------- 231 (491)
T PRK10982 232 -------------------------------------------------------------------------------- 231 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHHHH
Q 046656 607 RLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIVAN 686 (1326)
Q Consensus 607 ~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~~n 686 (1326)
T Consensus 232 -------------------------------------------------------------------------------- 231 (491)
T PRK10982 232 -------------------------------------------------------------------------------- 231 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccccccc
Q 046656 687 EFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNYLD 766 (1326)
Q Consensus 687 ef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 766 (1326)
+... .
T Consensus 232 ---~~~~---~--------------------------------------------------------------------- 236 (491)
T PRK10982 232 ---GRSL---T--------------------------------------------------------------------- 236 (491)
T ss_pred ---CCCc---c---------------------------------------------------------------------
Confidence 0000 0
Q ss_pred cccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeEEe
Q 046656 767 NRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFR 846 (1326)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~ 846 (1326)
. .. . .. . . .. .+..++++|+++.. +.+|+|+|++|+
T Consensus 237 ~---~~-~--------~~--~------~-~~--------~~~~i~~~~l~~~~---------------~~~l~~vsl~i~ 272 (491)
T PRK10982 237 Q---RF-P--------DK--E------N-KP--------GEVILEVRNLTSLR---------------QPSIRDVSFDLH 272 (491)
T ss_pred c---cc-c--------cc--c------C-CC--------CCcEEEEeCccccc---------------CcccceeeEEEe
Confidence 0 00 0 00 0 0 00 01146778887641 248999999999
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccc----ccceEEEeecCC---CCCCCCCHHHHHHHH
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET----FTRISGYCEQND---IHSPLVTVYESLLYS 919 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~---~~~~~~Tv~E~l~f~ 919 (1326)
+||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.... .++.+||++|+. .+++.+|+.++..+.
T Consensus 273 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~ 350 (491)
T PRK10982 273 KGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLIS 350 (491)
T ss_pred CCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehh
Confidence 999999999999999999999999876 45899999998764321 234589999985 357778887774332
Q ss_pred HH--hhccCC-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 920 AW--LRLRTE-VDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 920 ~~--lr~~~~-~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
.. ...... ......++.++++++.+++. +..++.++ .|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~ 425 (491)
T PRK10982 351 NIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG-----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVG 425 (491)
T ss_pred hhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc-----cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChh
Confidence 10 000001 12223345678899999995 45566654 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCC
Q 046656 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGS 1049 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~ 1049 (1326)
++..+++.|+++.++|+|||++|||++ ++.+.||++++|++ |+++..++.+.
T Consensus 426 ~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~~ 477 (491)
T PRK10982 426 AKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 999999999999888999999999986 57788999999986 68888776543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=593.06 Aligned_cols=451 Identities=18% Similarity=0.253 Sum_probs=330.5
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVH 209 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~ 209 (1326)
+++.+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++..
T Consensus 12 ~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (490)
T PRK10938 12 RLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNT 88 (490)
T ss_pred EcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcch
Confidence 334456999999999999999999999999999999999999987 9999999976643221 2458999997532
Q ss_pred --C------CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc
Q 046656 210 --I------GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD 281 (1326)
Q Consensus 210 --~------~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 281 (1326)
+ ..+||+|++.+.. +....++.+++.+||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~ 126 (490)
T PRK10938 89 DMLSPGEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGIT 126 (490)
T ss_pred hhcccchhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCH
Confidence 1 1457777664310 0012245678999998
Q ss_pred ccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHH
Q 046656 282 VCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETY 361 (1326)
Q Consensus 282 ~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 361 (1326)
+..+. .+..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ . +.+|+.++|+..++.
T Consensus 127 ~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvii~tH~~~~~~ 199 (490)
T PRK10938 127 ALLDR-----RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-S-GITLVLVLNRFDEIP 199 (490)
T ss_pred hhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHH
Confidence 76664 4457999999999999999999999999999999999999999999999865 3 556667889999999
Q ss_pred hhCCeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhch
Q 046656 362 DLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFH 441 (1326)
Q Consensus 362 ~~~D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 441 (1326)
++||+|++|++|+++.+|+++++.. . +.+.. +
T Consensus 200 ~~~d~v~~l~~G~i~~~~~~~~~~~-----------~----~~~~~-------------------------~-------- 231 (490)
T PRK10938 200 DFVQFAGVLADCTLAETGEREEILQ-----------Q----ALVAQ-------------------------L-------- 231 (490)
T ss_pred hhCCEEEEEECCEEEEeCCHHHHhc-----------c----hhhhh-------------------------h--------
Confidence 9999999999999999887665420 0 00000 0
Q ss_pred hhhhHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 046656 442 VGQKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKD 521 (1326)
Q Consensus 442 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~ 521 (1326)
. .+ + .
T Consensus 232 ---------~------------------------------~~------~-----------------------------~- 236 (490)
T PRK10938 232 ---------A------------------------------HS------E-----------------------------Q- 236 (490)
T ss_pred ---------h------------------------------hh------h-----------------------------c-
Confidence 0 00 0 0
Q ss_pred ccCCcchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCc
Q 046656 522 SVSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGF 601 (1326)
Q Consensus 522 ~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl 601 (1326)
... .
T Consensus 237 -~~~-----------------------------~---------------------------------------------- 240 (490)
T PRK10938 237 -LEG-----------------------------V---------------------------------------------- 240 (490)
T ss_pred -cCc-----------------------------c----------------------------------------------
Confidence 000 0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHH
Q 046656 602 DPNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQN 681 (1326)
Q Consensus 602 ~~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~ 681 (1326)
T Consensus 241 -------------------------------------------------------------------------------- 240 (490)
T PRK10938 241 -------------------------------------------------------------------------------- 240 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeecccc
Q 046656 682 AIVANEFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESE 761 (1326)
Q Consensus 682 al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~ 761 (1326)
. .+..
T Consensus 241 ------------~-~~~~-------------------------------------------------------------- 245 (490)
T PRK10938 241 ------------Q-LPEP-------------------------------------------------------------- 245 (490)
T ss_pred ------------c-cCcc--------------------------------------------------------------
Confidence 0 0000
Q ss_pred ccccccccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecc
Q 046656 762 SNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGV 841 (1326)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~v 841 (1326)
. . ... . . .. .. ....++++|+++.++ ++.+|+|+
T Consensus 246 ----------~-~--------~~~-~--~--~~-~~--------~~~~l~~~~l~~~~~-------------~~~il~~v 279 (490)
T PRK10938 246 ----------D-E--------PSA-R--H--AL-PA--------NEPRIVLNNGVVSYN-------------DRPILHNL 279 (490)
T ss_pred ----------c-c--------ccc-c--c--cc-CC--------CCceEEEeceEEEEC-------------CeeEEeec
Confidence 0 0 000 0 0 00 00 011478888887663 24599999
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc----ccccceEEEeecCCCCCC--CCCHHHH
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ----ETFTRISGYCEQNDIHSP--LVTVYES 915 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~--~~Tv~E~ 915 (1326)
||+|++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+... ...++.+||++|++.+.+ ..|++|+
T Consensus 280 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~ 358 (490)
T PRK10938 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNV 358 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHH
Confidence 999999999999999999999999999997531 148999999976421 123456899999875543 2467776
Q ss_pred HHHHHHh--hccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 916 LLYSAWL--RLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 916 l~f~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
+.+...- ....... ...++.++++++.++|.+ ..++.++ .|||||||||+||++|+.+|++|||||||+||
T Consensus 359 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gL 432 (490)
T PRK10938 359 ILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGL 432 (490)
T ss_pred HHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 6543210 1111112 223456889999999987 7777654 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcC-CEEEEEecCCcHHHHH-HhceeeEEecCcEEEEE
Q 046656 993 DARAAAIVMRTVKNTVETG-RTVVCTIHQPSIDIFE-AFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~D~v~~l~~gg~~~~~ 1044 (1326)
|+.++..+++.|++++++| .|||++||+++ ++.+ .+|++++|++ |++++.
T Consensus 433 D~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 433 DPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 9999999999999998765 47999999986 4655 4899999986 565554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-59 Score=512.04 Aligned_cols=470 Identities=24% Similarity=0.322 Sum_probs=363.2
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCC--CCceeeEEEECCccCCCCCcc-------ceEEEEcc
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS--SLKVSGRVTYNGHDMNEFVPQ-------RTAAYISQ 205 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 205 (1326)
+...++++|||.+++||.+||+|.||||||-..+.+.|+++. ....+|+|.|+|.++-....+ ..|+.++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999975 234689999999987443321 36999999
Q ss_pred CC--CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc
Q 046656 206 HD--VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283 (1326)
Q Consensus 206 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 283 (1326)
++ .+-|-.|+...+.-..+++.. ....+++.++-++|+.+|+.+.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------------------------------~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------------------------------LSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------------------------------ccHHHHHHHHHHHHHHcCCCch
Confidence 95 445666777776655544311 1112234456778999999876
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
...+ +.++..|||||||||.||.||+.+|++|+-||||++||.....+|.+.|+++-.. -+..++.|+|+..-+..+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHh
Confidence 5543 5789999999999999999999999999999999999999999999999998665 467788899999999999
Q ss_pred CCeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhh
Q 046656 364 FDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVG 443 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 443 (1326)
+|+|+||.+|+++++|+.+++. ..|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF--------~~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLF--------AAPQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHh--------hCCCC-------------------------hHH-----------------
Confidence 9999999999999999987663 11211 000
Q ss_pred hhHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 046656 444 QKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSV 523 (1326)
Q Consensus 444 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~ 523 (1326)
+.+.+. .|
T Consensus 255 r~Ll~a--eP---------------------------------------------------------------------- 262 (534)
T COG4172 255 RKLLAA--EP---------------------------------------------------------------------- 262 (534)
T ss_pred HHHHhc--CC----------------------------------------------------------------------
Confidence 000000 00
Q ss_pred CCcchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCccc
Q 046656 524 SDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDP 603 (1326)
Q Consensus 524 ~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~ 603 (1326)
T Consensus 263 -------------------------------------------------------------------------------- 262 (534)
T COG4172 263 -------------------------------------------------------------------------------- 262 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHH
Q 046656 604 NIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAI 683 (1326)
Q Consensus 604 ~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al 683 (1326)
T Consensus 263 -------------------------------------------------------------------------------- 262 (534)
T COG4172 263 -------------------------------------------------------------------------------- 262 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeecccccc
Q 046656 684 VANEFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESN 763 (1326)
Q Consensus 684 ~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~ 763 (1326)
.+
T Consensus 263 --------------~g---------------------------------------------------------------- 264 (534)
T COG4172 263 --------------SG---------------------------------------------------------------- 264 (534)
T ss_pred --------------CC----------------------------------------------------------------
Confidence 00
Q ss_pred ccccccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeeccee
Q 046656 764 YLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSG 843 (1326)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~ 843 (1326)
.+.+.+ +..++.++.+|+...++.+..+-.. ..+...++++||+
T Consensus 265 ---------------------------~~~p~~-------~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl 308 (534)
T COG4172 265 ---------------------------DPPPLP-------EDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISL 308 (534)
T ss_pred ---------------------------CCCCCC-------CCCCceEEecceEEEEecCCccccc--cchheEEecccee
Confidence 000000 0012234555554444433211000 1123569999999
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc------ccccceEEEeecCC--CCCCCCCHHHH
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ------ETFTRISGYCEQND--IHSPLVTVYES 915 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~~~~~Tv~E~ 915 (1326)
+.++||.+||+|.||||||||=.+|.++..+ +|+|.++|.++.. ...++.+-.|+||+ .+.|.+||.+-
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 9999999999999999999999999998763 5999999998753 23567789999997 46799999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
+.-+.....+ ..+..++++++.++|+.+||.+- +++. +.++|||||||++||||++.+|++++||||||.||.
T Consensus 386 I~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 386 IEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred hhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 8877655443 46788899999999999999863 3333 246999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 995 RAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 995 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
.-+.+|.++|+++.+ .|.+-++++||+. -+-.+||++++|++ |++|..||.
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 999999999999974 4999999999986 46667999999985 799999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=576.03 Aligned_cols=201 Identities=23% Similarity=0.318 Sum_probs=165.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|||++|++||+++|+|+||||||||+++|+|..+ +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 478899987663 3469999999999999999999999999999999999876 4589999854 2
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 046656 889 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~-~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 966 (1326)
..+||++|+. .+++.+||+|++.+...... .... ...++++++.+++.+ ..++.++ .|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 67788999999987642221 1111 123457899999964 4566654 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE-EEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~G 1045 (1326)
|||++||++|+.+|++|||||||+|||+.++..+++.|+++. | |||++||++. .+...||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999862 4 8999999986 5778899999998767776 555
Q ss_pred C
Q 046656 1046 P 1046 (1326)
Q Consensus 1046 ~ 1046 (1326)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 5
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=576.92 Aligned_cols=198 Identities=18% Similarity=0.255 Sum_probs=164.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 588999988763 2459999999999999999999999999999999999876 45899999873
Q ss_pred CcccccceEEEeecCCC--CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 046656 889 KQETFTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~--~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgG 965 (1326)
+.+||++|+.. +.+.+|++|++.+.. .. . ..++.++++++.+++. +..+..++ .||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCccc-----ccCHH
Confidence 35899999864 456789999986421 11 1 1134578899999994 56676654 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE-EE
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1044 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~ 1044 (1326)
||||++||++|+.+|+||||||||+|||+.+...+++.|+++ +.|||++|||+. .+.+.+|++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999876 459999999986 57778999999997 5665 87
Q ss_pred cCC
Q 046656 1045 GPL 1047 (1326)
Q Consensus 1045 G~~ 1047 (1326)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=576.68 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=164.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 478899887663 2469999999999999999999999999999999999876 4589999854 1
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 046656 889 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~-~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGq 966 (1326)
..+||++|+. .+++.+||.|++.+...... .... +..++++++.+++.+ ..++.++ .|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 47788999999987642211 1111 123567899999964 4566653 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE-EEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~G 1045 (1326)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. .|||++|||+. .+...+|++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999986 5777899999998767766 555
Q ss_pred C
Q 046656 1046 P 1046 (1326)
Q Consensus 1046 ~ 1046 (1326)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 5
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=553.96 Aligned_cols=197 Identities=22% Similarity=0.341 Sum_probs=161.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+.++|+++.++ ++.+|+|+|++|++|+++||+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 478899987763 3569999999999999999999999999999999999876 45899999741
Q ss_pred CcccccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 046656 889 KQETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgG 965 (1326)
..+||++|+. .+.+..|+.+++.- . . .......+.++|+.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2589999974 34455677776531 1 1 1112345789999999963 5666664 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE-EE
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1044 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~ 1044 (1326)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ . .|||++|||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999986 57788999999986 5765 88
Q ss_pred cCC
Q 046656 1045 GPL 1047 (1326)
Q Consensus 1045 G~~ 1047 (1326)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=552.82 Aligned_cols=198 Identities=23% Similarity=0.247 Sum_probs=167.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ + ..|+++|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 477888886652 1 24899999999999999999999999999999999876 458999885
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..++.++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 1489999998888889999999874211 111 1246889999999988887764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+||++|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 5777899999996 3 77777764
Q ss_pred C
Q 046656 1048 G 1048 (1326)
Q Consensus 1048 ~ 1048 (1326)
.
T Consensus 538 ~ 538 (590)
T PRK13409 538 S 538 (590)
T ss_pred C
Confidence 3
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-55 Score=552.93 Aligned_cols=202 Identities=24% Similarity=0.336 Sum_probs=164.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+.++|+++.++ ++.+|+|+|++|++|+++||+||||||||||+++|+|..+ +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478899987763 3469999999999999999999999999999999999876 45899998 4321
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 046656 889 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~-~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGq 966 (1326)
.+||++|+. .+.+.+||.|++.+.... ..... ....+.++++.+++. +..++.++ .|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~---~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQE---VMVNG--RPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhccc---ccccc--hHHHHHHHHHhcCCCHHHHhChhh-----hCCHHH
Confidence 489999975 577889999999874321 01111 123478889999985 45666654 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-cCcEEEEEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-RGGQEIYVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-~gg~~~~~G 1045 (1326)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||++++|. +|.-+.|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999875 459999999976 5777899999997 565556777
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 64
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-55 Score=510.63 Aligned_cols=465 Identities=21% Similarity=0.338 Sum_probs=359.3
Q ss_pred hhcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc----ceEEEE
Q 046656 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ----RTAAYI 203 (1326)
Q Consensus 128 ~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv 203 (1326)
+++++.++..++|+|||+.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.++|.+..-..++ .-|+.|
T Consensus 12 ~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 12 RGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred ecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEE
Confidence 35567778889999999999999999999999999999999999999998 99999999988655543 458999
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc
Q 046656 204 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283 (1326)
Q Consensus 204 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 283 (1326)
.|+..++|++||.|||.++...... ...+ +..+....+..+|+.+|++..
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~---~g~i---------------------------d~~~m~~~A~~~l~~lg~~~~ 138 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRR---FGLI---------------------------DRKAMRRRARELLARLGLDID 138 (500)
T ss_pred eechhccCCccHHHHhhcccccccC---CCcc---------------------------CHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999887543221 0000 011123345678999999755
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
.++.|+ +||+||||-|.||+|+..++++++|||||++|+...+..+++.++++.. +|..+|.|+|..+|++++
T Consensus 139 ~~~~v~-----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i 211 (500)
T COG1129 139 PDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEI 211 (500)
T ss_pred hhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHh
Confidence 777776 4999999999999999999999999999999999999999999999854 588889999999999999
Q ss_pred CCeEEEecCCeEEEEcCh-hhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchh
Q 046656 364 FDDIILLSDGQIVYQGPC-ELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHV 442 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~-~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 442 (1326)
||+|.||.||+++..++. .+. +.+++.
T Consensus 212 ~DritVlRDG~~v~~~~~~~~~--------------------------------------------~~~~lv-------- 239 (500)
T COG1129 212 ADRITVLRDGRVVGTRPTAAET--------------------------------------------SEDELV-------- 239 (500)
T ss_pred cCEEEEEeCCEEeeecccccCC--------------------------------------------CHHHHH--------
Confidence 999999999999876652 211 000000
Q ss_pred hhhHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCc
Q 046656 443 GQKLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDS 522 (1326)
Q Consensus 443 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~ 522 (1326)
+
T Consensus 240 -----------------------------------~-------------------------------------------- 240 (500)
T COG1129 240 -----------------------------------R-------------------------------------------- 240 (500)
T ss_pred -----------------------------------H--------------------------------------------
Confidence 0
Q ss_pred cCCcchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCcc
Q 046656 523 VSDGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFD 602 (1326)
Q Consensus 523 ~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~ 602 (1326)
. |+|
T Consensus 241 -----------------~---------------------------------------------------------MvG-- 244 (500)
T COG1129 241 -----------------L---------------------------------------------------------MVG-- 244 (500)
T ss_pred -----------------H---------------------------------------------------------hhC--
Confidence 0 000
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHH
Q 046656 603 PNIGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNA 682 (1326)
Q Consensus 603 ~~~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~a 682 (1326)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccc
Q 046656 683 IVANEFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESES 762 (1326)
Q Consensus 683 l~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~ 762 (1326)
...+.
T Consensus 245 --------r~~~~------------------------------------------------------------------- 249 (500)
T COG1129 245 --------RELED------------------------------------------------------------------- 249 (500)
T ss_pred --------cchhh-------------------------------------------------------------------
Confidence 00000
Q ss_pred cccccccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecce
Q 046656 763 NYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVS 842 (1326)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs 842 (1326)
. + .. .... ...+..+++++++.. ..++|+|
T Consensus 250 -----------~---~----~~---------~~~~------~~~~~~l~v~~l~~~-----------------~~~~dvS 279 (500)
T COG1129 250 -----------L---F----PE---------PPEE------GIGEPVLEVRNLSGG-----------------GKVRDVS 279 (500)
T ss_pred -----------h---c----cc---------cccc------CCCCcEEEEecCCCC-----------------CceeCce
Confidence 0 0 00 0000 001224566666521 1588999
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecC---CCCCCCCCHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE----TFTRISGYCEQN---DIHSPLVTVYES 915 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~---~~~~~~~Tv~E~ 915 (1326)
|++++||++||-|-=|||+|-|+++|.|..+ ..+|+|.+||.+.... ..+.-++|||.| +-++..++|.||
T Consensus 280 f~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~N 357 (500)
T COG1129 280 FTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAEN 357 (500)
T ss_pred eEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHh
Confidence 9999999999999999999999999999654 4589999999986532 234568999986 456788999999
Q ss_pred HHHHHHhhcc-C-CCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 916 LLYSAWLRLR-T-EVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 916 l~f~~~lr~~-~-~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
+.++...+.. . -++.....+.+++..+.+++..- .+..+ ..||||++|||.|||.|..+|+||||||||.|+
T Consensus 358 i~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 358 ITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred eehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 9887332221 1 24555556678999999998642 23444 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCChhh
Q 046656 993 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSD 1053 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~~~~ 1053 (1326)
|..+...|.++|++++++|++||++|-+.. |+...||||++|.+ |+++-.=+.++.+++
T Consensus 433 DVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~~~tee 491 (500)
T COG1129 433 DVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDREEATEE 491 (500)
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccccCCHH
Confidence 999999999999999999999999999985 89999999999995 788764444433333
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=530.62 Aligned_cols=200 Identities=20% Similarity=0.269 Sum_probs=158.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 578999988763 12359999999999999999999999999999999999876 45899998652
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqr 967 (1326)
..+||++|+. ...+++.++..+... +...... .+.++++++.+++.+ ..+..+ ..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~-~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMM-RCFPGVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHH-HhcCCCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 3589999975 234556665432211 1111111 245788999999974 555554 36999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE-EEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~G~ 1046 (1326)
|||+||++|+.+|++|||||||+|||+.+...+.+.|++. . .|||++|||+. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 3 49999999986 57778999999986 6776 7776
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=496.96 Aligned_cols=226 Identities=25% Similarity=0.295 Sum_probs=173.0
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCC
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVH 209 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~ 209 (1326)
++..++.+++|+|+|+.+.+|+.++|+|+|||||||||++|+|.+.|+ +|+|...+ .-+++|++|+...
T Consensus 9 ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~ 77 (530)
T COG0488 9 LSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPL 77 (530)
T ss_pred eEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCc
Confidence 344556788999999999999999999999999999999999999998 99998765 2379999999998
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchh---HHHH-HHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLF---IDVF-MKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~---~~~~-~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
.+..||++.+.-+..- .++...+...... ..+|.+ .+.+ .......+.+.+..++.++..||++.. +
T Consensus 78 ~~~~tv~~~v~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 78 DPEKTVLDYVIEGFGE-----LRELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred CCCccHHHHHHhhhHH-----HHHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 8899999999875431 1111111111111 111110 0111 111222334445678888999999876 5
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
+.+ .+||||||.||++|++|..+|++|+|||||++||..+..++-+.|++. .+ ++|+++|+..-.-+.|+
T Consensus 149 ~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 149 RPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred Cch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhh
Confidence 544 469999999999999999999999999999999999999999999863 35 66678999999999999
Q ss_pred eEEEecCCeEE-EEcChhhHH
Q 046656 366 DIILLSDGQIV-YQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv-~~G~~~~~~ 385 (1326)
+|+-++.|++. |.|.++...
T Consensus 219 ~I~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 219 HILELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred heEEecCCceeEecCCHHHHH
Confidence 99999999775 777776543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=468.84 Aligned_cols=466 Identities=22% Similarity=0.322 Sum_probs=361.9
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc----ceEEEEc
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ----RTAAYIS 204 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 204 (1326)
..++.++...+++|||+.+++||+++|+|.||||||||+++|.|.++|+ +|+|.++|+++.-..|+ .-||.|.
T Consensus 9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVh 85 (501)
T COG3845 9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVH 85 (501)
T ss_pred ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEe
Confidence 3456667788999999999999999999999999999999999999998 99999999998655553 3589999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
||..+++++||.||+..+..-.. ..+.+ ..+....++++.+.+||+---
T Consensus 86 QHF~Lv~~lTV~ENiiLg~e~~~-~~~~~------------------------------~~~~~~~i~~l~~~yGl~vdp 134 (501)
T COG3845 86 QHFMLVPTLTVAENIILGLEPSK-GGLID------------------------------RRQARARIKELSERYGLPVDP 134 (501)
T ss_pred eccccccccchhhhhhhcCcccc-ccccC------------------------------HHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999998764321 00000 011234467788999999888
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
|.+|++ ||=||||||.|-++|+.+|++|+|||||+-|-|....++++.|++++. .|.+||.|+|-..|+.+.|
T Consensus 135 ~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~ia 207 (501)
T COG3845 135 DAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIA 207 (501)
T ss_pred cceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhh
Confidence 877764 999999999999999999999999999999999999999999999875 4677778999999999999
Q ss_pred CeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcCccccchhhhccCCCcccCCHHHHHHHHHhchhhh
Q 046656 365 DDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTSRKDQRQYWVHREMPYRFITVQEFSEAFQSFHVGQ 444 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 444 (1326)
|++.||..|+++-.-++ . .. .+.+++++
T Consensus 208 DrvTVLR~Gkvvgt~~~--~------------~~-----------------------------~t~~ela~--------- 235 (501)
T COG3845 208 DRVTVLRRGKVVGTVDP--V------------AE-----------------------------TTEEELAE--------- 235 (501)
T ss_pred CeeEEEeCCeEEeeecC--C------------CC-----------------------------CCHHHHHH---------
Confidence 99999999998643211 0 00 00000000
Q ss_pred hHHHhhcCcCCCCCCCCccccCCCCCCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccCCCCccC
Q 046656 445 KLTDELRTPLDKSKSHPAALTTKGYGVGMKELFKANISREFLLIKRNSFVYIFKLIQLSTMALVSSTLFFRANMNKDSVS 524 (1326)
Q Consensus 445 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~ali~g~~f~~~~~~~~~~~ 524 (1326)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchhhHHHHHHHHHHHHhhhHHHHHHhhcchhhHhhhccCccchHHHHHHHHHHHhhHHHHHHHhhheeeeeccCcccc
Q 046656 525 DGGIYIGAMFFAVIMTTFNGMSDISMTVAKLPIFYKQRGLRFYPAWAYALPAWILKIPISFLEVSIWVFLTYYAIGFDPN 604 (1326)
Q Consensus 525 ~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~ 604 (1326)
+ |+|
T Consensus 236 ---------------l---------------------------------------------------------MvG---- 239 (501)
T COG3845 236 ---------------L---------------------------------------------------------MVG---- 239 (501)
T ss_pred ---------------H---------------------------------------------------------hcC----
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHhhCHHHHHHHHHH
Q 046656 605 IGRLFKQLLLLLFINQMASALFRFIAAAGRNMIVAMSFGSFALVVFFAFGGFVLSQDDINNGWIWGYWCSPMMYAQNAIV 684 (1326)
Q Consensus 605 ~~~ff~~~l~~~l~~~~~~~lf~~i~~~~~~~~va~~~~~~~~l~~~l~~Gf~i~~~~i~~~~~w~~~isp~~y~~~al~ 684 (1326)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCccccccCCCcchhhHHhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeccccccc
Q 046656 685 ANEFFGHSWRKFTTNSTESLGVQVLKSRGFFPHAFWYWIGLGAMIGFVLLFNIGFTLSLTFLNQFEKPQAVILEESESNY 764 (1326)
Q Consensus 685 ~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~~~lig~~~~f~i~~~l~l~~l~~~~~~~~~~~~~~~~~~ 764 (1326)
+.. ..
T Consensus 240 ------~~v--------------------------------------------------------------~~------- 244 (501)
T COG3845 240 ------REV--------------------------------------------------------------VL------- 244 (501)
T ss_pred ------Ccc--------------------------------------------------------------cc-------
Confidence 000 00
Q ss_pred cccccCCcccccccCCCCCCCCCCCccccCCCccCCcccCCCCceEEEecccceeccchhhhccccccCceEeeecceeE
Q 046656 765 LDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGA 844 (1326)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~ 844 (1326)
. . . ..+..+ .+..++++|++..... +...+++|||+
T Consensus 245 ---------~--------~------~---~~~~~p------g~~vL~V~~L~v~~~~------------~~~~v~~vs~~ 280 (501)
T COG3845 245 ---------R--------V------V---KPPSTP------GEVVLEVEDLSVKDRR------------GVTAVKDVSFE 280 (501)
T ss_pred ---------c--------c------c---cCCCCC------CCeEEEEeeeEeecCC------------CCceeeeeeeE
Confidence 0 0 0 000000 0235677777654321 23579999999
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC-Cc----ccccceEEEeecCCC---CCCCCCHHHHH
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK-KQ----ETFTRISGYCEQNDI---HSPLVTVYESL 916 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~-~~----~~~~~~~gyv~Q~~~---~~~~~Tv~E~l 916 (1326)
+++||++||.|..|-|-+.|+.+|+|..++ ..|+|.++|.+. .. ...+.-+||||.|.. +.+.+|+.||+
T Consensus 281 Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~ 358 (501)
T COG3845 281 VRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENL 358 (501)
T ss_pred EecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHh
Confidence 999999999999999999999999998753 459999999986 21 122346899999863 46789999999
Q ss_pred HHHHHhh----ccCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 046656 917 LYSAWLR----LRTEVDSETRKMFIEEIMELVELKPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991 (1326)
Q Consensus 917 ~f~~~lr----~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsg 991 (1326)
.+...-+ ...-++.....++..++++.++..... +.. .+.||||++||+-+||+|.++|++|+..+||-|
T Consensus 359 vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrG 433 (501)
T COG3845 359 VLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-----ARSLSGGNQQKLILARELARRPDLLIAAQPTRG 433 (501)
T ss_pred hhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-----hhhcCCcceehhhhhhhhccCCCEEEEcCCCcc
Confidence 8764321 111345566778899999999987321 222 246999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCCh
Q 046656 992 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNS 1051 (1326)
Q Consensus 992 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~~ 1051 (1326)
||..+.+.|.+.|.+.++.|+.|++++-+++ ++++.+|||.+|.+ |+++...+..+.+
T Consensus 434 LDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~~t 491 (501)
T COG3845 434 LDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEEAT 491 (501)
T ss_pred ccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-CceecccccccCC
Confidence 9999999999999999999999999999997 89999999999995 7999888876543
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=374.83 Aligned_cols=214 Identities=27% Similarity=0.372 Sum_probs=189.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
|+++|+++++ +...+|+|||++|++||+++|+|||||||||||++|.|+.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778887766 45689999999999999999999999999999999999887 56999999997553
Q ss_pred ----cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 890 ----QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 890 ----~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
-...|+.+|+|+|+..+||++||.||+..+...- ...++++.++...++|+.+||.+.+|.... .||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCcH
Confidence 2346788999999999999999999999865322 345677788889999999999999998854 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|||||+|||||+.+|+++++|||||.|||+....+.+.+++++++|.|+||+||.... .-+.+|||++|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999863 5677899999985 7999988
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=376.89 Aligned_cols=229 Identities=24% Similarity=0.365 Sum_probs=196.4
Q ss_pred hhcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC----CccceEEEE
Q 046656 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF----VPQRTAAYI 203 (1326)
Q Consensus 128 ~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv 203 (1326)
+++.+.++...+|+|||+.+++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..|+.+|+|
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmV 82 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMV 82 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCee
Confidence 34556778889999999999999999999999999999999999999998 99999999765321 235789999
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc
Q 046656 204 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283 (1326)
Q Consensus 204 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 283 (1326)
+|+..+||++||.||+..+...-. .....+++....++|+.+||.+.
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~---------------------------------~~~k~eA~~~A~~lL~~VGL~~k 129 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVK---------------------------------KLSKAEAREKALELLEKVGLADK 129 (240)
T ss_pred cccccccccchHHHHHHhhhHHHc---------------------------------CCCHHHHHHHHHHHHHHcCchhh
Confidence 999999999999999998653210 01122344556778999999998
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
+| .++..|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++ .+.|++.++|.+.-+.+.
T Consensus 130 a~-----~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~--eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 130 AD-----AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIVTHEMGFAREV 202 (240)
T ss_pred hh-----hCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH--cCCeEEEEechhHHHHHh
Confidence 87 56778999999999999999999999999999999999999999999999987 467777799999999999
Q ss_pred CCeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHH
Q 046656 364 FDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQE 407 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~ 407 (1326)
+|||+.|++|+++.+|+++++ |..|.+....+|+..
T Consensus 203 adrviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 203 ADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred hheEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 999999999999999999887 566776667777654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=394.79 Aligned_cols=201 Identities=19% Similarity=0.237 Sum_probs=156.6
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..+.++|+++.++. +..++++++|-|.+++.+|+|||||+|||||||++.|... +..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 36789999987752 2258999999999999999999999999999999999877 457877543221
Q ss_pred CCcccccceEEEeecC--CCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCH
Q 046656 888 KKQETFTRISGYCEQN--DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESGLST 964 (1326)
Q Consensus 888 ~~~~~~~~~~gyv~Q~--~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~LSg 964 (1326)
.+++..|+ +.+.-..++-|+++=. ..+..+.+.+..++..+||... .+..+ +.||+
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~ 512 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSD 512 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccch-----hhccc
Confidence 12333343 2233345666665421 1112345568899999999843 44444 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||+||.+|+.++..|.||+|||||+|||..+...+-+.|.+. ..+||+++||.. -+-+.++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999988888765 458999999986 477889999999999999999
Q ss_pred cCC
Q 046656 1045 GPL 1047 (1326)
Q Consensus 1045 G~~ 1047 (1326)
|+.
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 985
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=375.18 Aligned_cols=218 Identities=27% Similarity=0.425 Sum_probs=187.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.|+ .+ ++|+|||++|++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 578999998874 12 59999999999999999999999999999999999877 5699999999886
Q ss_pred CcccccceEEEeecCCCC--CCCCCHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQETFTRISGYCEQNDIH--SPLVTVYESLLYSAWLRLR--TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~--~~~~Tv~E~l~f~~~lr~~--~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
....-+..+|||||...+ ...+||+|-+..+...+.. ....++ .++.++++|+.+|+.+++|+.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~-d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK-DKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHH-HHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 554435679999996532 3347999999886433321 122233 35779999999999999999997 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
||+||+.|||||+++|++|+|||||+|+|+.++..++++|++++++|+|||+++||++ .+.+.||++++|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999998 6889999999997 589999
Q ss_pred cCCCCC
Q 046656 1045 GPLGSN 1050 (1326)
Q Consensus 1045 G~~~~~ 1050 (1326)
|++++.
T Consensus 220 G~~~~~ 225 (254)
T COG1121 220 GPPEEV 225 (254)
T ss_pred cChhhc
Confidence 998653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=375.24 Aligned_cols=218 Identities=24% Similarity=0.332 Sum_probs=191.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||++++.++.. |.+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5677877555321 1134579999999999999999999999999999999999887 56999999997754
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 Q------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
. ..+|+.+|+++|+..++...||+||+.|...+.. .++++++++|.++++.+||.+.++... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 3 2467889999999999999999999999877653 678889999999999999999888875 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
|||||||+|||||+.+|+||++|||||.|||++.+.|.++|+++.++ |.||+++||+++ -+-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999755 999999999976 36668999999985 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99986
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=390.64 Aligned_cols=223 Identities=30% Similarity=0.436 Sum_probs=193.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|++..++ .++.+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeC
Confidence 356677776652 14679999999999999999999999999999999999987 4699999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.... ...+++++++++.++|.+..++.+ ++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHH
Confidence 54 3567789999999999999999999999998886543 344567999999999998666665 4699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|||++||+||+++|++|||||||+|||+.++..+++.|++++++| +||+++||+++ ++...||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999997 78888999999985 7999999
Q ss_pred CCCCChhhHHHHHh
Q 046656 1046 PLGSNSSDLISYLQ 1059 (1326)
Q Consensus 1046 ~~~~~~~~~~~~f~ 1059 (1326)
+. .++...+.
T Consensus 220 ~~----~~l~~~~~ 229 (293)
T COG1131 220 TP----EELKEKFG 229 (293)
T ss_pred CH----HHHHHhhc
Confidence 75 34444443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=359.38 Aligned_cols=217 Identities=27% Similarity=0.386 Sum_probs=193.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+++++|+.++ +.+.|++|||++|++||+++|||+||+||||||+.|.|+.+ +.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 68889988765 45789999999999999999999999999999999999988 4699999999986
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 046656 889 KQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESG 961 (1326)
Q Consensus 889 ~~------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~ 961 (1326)
.+ ...++++|+++|+-.+|..+||+||+.|.. |.....+++..++.+..-|+.+||... .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 135678999999999999999999999864 455567788888888888999999876 5554 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||++||++||||++.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..+||+++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 999999999987 68999999999996 79
Q ss_pred EEEEcCCCC
Q 046656 1041 EIYVGPLGS 1049 (1326)
Q Consensus 1041 ~~~~G~~~~ 1049 (1326)
++..|+.++
T Consensus 224 v~~~Gt~~e 232 (263)
T COG1127 224 VIAEGTPEE 232 (263)
T ss_pred EEEeCCHHH
Confidence 999999743
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=374.92 Aligned_cols=229 Identities=27% Similarity=0.384 Sum_probs=194.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++.+|+++.|+ ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367888888774 4679999999999999999999999999999999999887 4589999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT-EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ..+.+.+||+||.....+.+||+|.+.++..-.... ....++.++.++++|+.+++.+++++.+. .|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 54 457789999999998888999999999875422211 11223334469999999999999999875 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||+.|||||+++|+||+||||||+||...+..++++++++. ++|+|||+++||++. ...+||++++|++ |++++
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 99999999999999999999999999999999999999999998 459999999999984 7789999999995 79999
Q ss_pred EcCCCC-ChhhHHHHHh
Q 046656 1044 VGPLGS-NSSDLISYLQ 1059 (1326)
Q Consensus 1044 ~G~~~~-~~~~~~~~f~ 1059 (1326)
.|++.+ .+++.++--+
T Consensus 220 ~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 220 QGTPEEVLTEENLREVY 236 (258)
T ss_pred ecCcchhcCHHHHHHHh
Confidence 998643 4555554333
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=362.54 Aligned_cols=214 Identities=27% Similarity=0.367 Sum_probs=191.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++|+||+..+. ++.+++|+|++|++||++.++|||||||||+|++|.++.. +.+|+|+|||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 57888887653 4679999999999999999999999999999999999987 56999999999876
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP--LRQSLVGLPGESGLST 964 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~vg~~~~~~LSg 964 (1326)
. ..+||.+|||-|.-.++|++||.||+.+-..+. ..++++.+++++|+|++++|.+ +.++.. .+|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYP-----HELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----hhcCc
Confidence 5 357889999999999999999999998865543 4567888889999999999975 677664 56999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
||+|||.+||||+.+|+||+||||++.|||-++..+++.++++.++ |+|||++|||.+ |.+.++|||.+|+ +|+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999998765 999999999987 7889999999998 579998
Q ss_pred EcCCC
Q 046656 1044 VGPLG 1048 (1326)
Q Consensus 1044 ~G~~~ 1048 (1326)
.+++.
T Consensus 217 ~~~P~ 221 (309)
T COG1125 217 YDTPD 221 (309)
T ss_pred eCCHH
Confidence 88764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=359.95 Aligned_cols=217 Identities=25% Similarity=0.396 Sum_probs=191.7
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEcc
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQ 205 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 205 (1326)
++++++.++.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||.++.+.+. ||.+|||-|
T Consensus 6 nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 6 NVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhh
Confidence 4556677888999999999999999999999999999999999999998 9999999999877654 689999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
+-.+||++||.||+.+-..+++..+ ++.+.+++++|+.+||+...
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~~- 127 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPSE- 127 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHHH-
Confidence 9999999999999999777665421 22345678999999998521
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
..+++++.|||||+|||.+||||+.+|+|++||||+++|||-++.++.+.++++-+.. ++|||.++|+.+|++.++|
T Consensus 128 --~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLad 204 (309)
T COG1125 128 --YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLAD 204 (309)
T ss_pred --HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhc
Confidence 2357899999999999999999999999999999999999999999999999886655 5666779999999999999
Q ss_pred eEEEecCCeEEEEcChhhHHH
Q 046656 366 DIILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~~ 386 (1326)
||++|++|+++..+++++++.
T Consensus 205 ri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 205 RIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred eEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999863
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=371.56 Aligned_cols=223 Identities=27% Similarity=0.373 Sum_probs=196.0
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 209 (1326)
..++|+|||+.|++|++.+|+|+||||||||++++.++..|+ +|+|.++|.++..... |+.+|+++|+..+
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 467999999999999999999999999999999999999998 9999999988765532 4789999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
+...||.||++|..+..+.. ..+.+.++.++|+.+||++.+|
T Consensus 95 LssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~---- 136 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKAD---- 136 (339)
T ss_pred cccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhc----
Confidence 99999999999998876532 1223456788999999998776
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.++.+|||||||||+|||||+.+|+||+.|||||+|||.|+..|.+.|+++.+.. +.||+.++|-++-+.+.||||.+
T Consensus 137 -~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVav 214 (339)
T COG1135 137 -RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAV 214 (339)
T ss_pred -cCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhheE
Confidence 5677899999999999999999999999999999999999999999999987755 66777799999999999999999
Q ss_pred ecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhc
Q 046656 370 LSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVT 409 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~ 409 (1326)
|++|+++++|+..++ |..|.+.-..+|+.+..
T Consensus 215 m~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 215 LDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred eeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 999999999999988 45676666666766554
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=364.02 Aligned_cols=204 Identities=26% Similarity=0.366 Sum_probs=180.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+.++++++.+. ...+|+|||++|++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 466778877663 3579999999999999999999999999999999999987 4699999999987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ....+|||+|++.++|..||+||+.|+...+. .+++++.++++++|+.+||.+..|+.. ..|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 32 34568999999999999999999999876653 455666778999999999999999875 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
||+|||||+.+|+||+||||++.||+.++..+++.|.++.+ .++|||++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999864 5899999999987 677889999999975
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=387.93 Aligned_cols=226 Identities=28% Similarity=0.417 Sum_probs=198.8
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc-ceEEEEccCC
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-RTAAYISQHD 207 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d 207 (1326)
++.+.++...+|+|+|+.|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+.
T Consensus 8 ~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~y 84 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNY 84 (338)
T ss_pred eeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCc
Confidence 3444455444999999999999999999999999999999999999998 99999999999998775 8899999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.++|+|||+||+.|+.+.++... .+...+++++.+.|+|++..|
T Consensus 85 ALyPhmtV~~Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~-- 128 (338)
T COG3839 85 ALYPHMTVYENIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLN-- 128 (338)
T ss_pred cccCCCcHHHHhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHh--
Confidence 99999999999999998765421 123455788899999999887
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
+.+++|||||||||++||||+.+|++++||||+|.||+..+.++...++++-+. -++|+|.++|+..|+..++|||
T Consensus 129 ---r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~-l~~T~IYVTHDq~EAmtladri 204 (338)
T COG3839 129 ---RKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER-LGTTTIYVTHDQVEAMTLADRI 204 (338)
T ss_pred ---cCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh-cCCcEEEEcCCHHHHHhhCCEE
Confidence 457789999999999999999999999999999999999999999999997544 4667777999999999999999
Q ss_pred EEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHH
Q 046656 368 ILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l 405 (1326)
.+|++|++...|++.++ |..|...-+|.|+
T Consensus 205 ~Vm~~G~i~Q~g~p~el--------y~~P~n~fVA~Fi 234 (338)
T COG3839 205 VVMNDGRIQQVGTPLEL--------YERPANLFVAGFI 234 (338)
T ss_pred EEEeCCeeeecCChHHH--------hhCccchhhhhhc
Confidence 99999999999999998 4577777777775
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=357.37 Aligned_cols=230 Identities=26% Similarity=0.337 Sum_probs=194.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||+..|+ +++++|+|||+.|++||++||+|+|||||||||++|.|+.. +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478889887764 35689999999999999999999999999999999999766 5689999999765
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHHH-----hhccCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046656 889 KQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAW-----LRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957 (1326)
Q Consensus 889 ~~------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~-----lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~ 957 (1326)
.. ..+++.+||++|+..+.+.++|.||++.+.. .+.......++.+..+-++|+.+|+.+.+-+..+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 2457889999999999999999999987542 2222234444555668899999999998887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
.|||||+|||+|||||+++|+||+.|||+++|||.++..||+.|+++.+ .|.|||++.||.+. ..++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 5999999999999999999999999999999999999999999999975 49999999999874 667899999998
Q ss_pred cCcEEEEEcCCCCChhhHHHHHh
Q 046656 1037 RGGQEIYVGPLGSNSSDLISYLQ 1059 (1326)
Q Consensus 1037 ~gg~~~~~G~~~~~~~~~~~~f~ 1059 (1326)
+ |+++|.||..+.+++.++..+
T Consensus 223 ~-G~ivfDg~~~el~~~~~~~iY 244 (258)
T COG3638 223 A-GRIVFDGPASELTDEALDEIY 244 (258)
T ss_pred C-CcEEEeCChhhhhHHHHHHHh
Confidence 5 799999998766655554433
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=367.54 Aligned_cols=228 Identities=29% Similarity=0.452 Sum_probs=192.2
Q ss_pred ccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCc---cCCCCCc-cceEEEEccC
Q 046656 131 TTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH---DMNEFVP-QRTAAYISQH 206 (1326)
Q Consensus 131 ~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~ 206 (1326)
++..+...+++|||+.|+.||+++++|||||||||||++|+|+..|+ .|.|.+||. +...... .|.+|||+|+
T Consensus 9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~ 85 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQH 85 (345)
T ss_pred hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEec
Confidence 34455677999999999999999999999999999999999999998 999999999 5555333 4889999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
..+|++|||.+||+|+.+++.. + |+ ..+.+.+++++|+.+.|++.++
T Consensus 86 YALF~HmtVa~NIAFGl~~~~~--~-----------------p~-------------~~~~r~rv~elL~lvqL~~la~- 132 (345)
T COG1118 86 YALFPHMTVADNIAFGLKVRKE--R-----------------PS-------------EAEIRARVEELLRLVQLEGLAD- 132 (345)
T ss_pred hhhcccchHHhhhhhccccccc--C-----------------CC-------------hhhHHHHHHHHHHHhcccchhh-
Confidence 9999999999999999877521 1 10 1123345677899999987665
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
+++..|||||||||++||||+..|++|+||||+++||.+.+.++-+.|+++....+ .+.+.++|+..|++++||+
T Consensus 133 ----ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~-~ttvfVTHD~eea~~ladr 207 (345)
T COG1118 133 ----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG-VTTVFVTHDQEEALELADR 207 (345)
T ss_pred ----cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC-ceEEEEeCCHHHHHhhcce
Confidence 78889999999999999999999999999999999999999999999999866544 5555689999999999999
Q ss_pred EEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHH
Q 046656 367 IILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQE 407 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~ 407 (1326)
|++|++|+|...||++++ |..|...-...|+-+
T Consensus 208 vvvl~~G~Ieqvg~p~ev--------~~~P~s~fV~~f~G~ 240 (345)
T COG1118 208 VVVLNQGRIEQVGPPDEV--------YDHPASRFVARFLGE 240 (345)
T ss_pred EEEecCCeeeeeCCHHHH--------hcCCCccceeccccc
Confidence 999999999999999998 445655555555443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=388.67 Aligned_cols=230 Identities=29% Similarity=0.422 Sum_probs=203.1
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCC
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHD 207 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d 207 (1326)
++++.++...+|+|+|+.|++||++.++|||||||||||++|||+..|+ +|+|.++|.+++...+ +|.+++|+|+.
T Consensus 10 ~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~Y 86 (352)
T COG3842 10 NVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSY 86 (352)
T ss_pred eeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCc
Confidence 3456667788999999999999999999999999999999999999998 9999999999988766 48899999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+||+|||+||+.|+.+.++... ..+...+++++|+.++|++.++
T Consensus 87 ALFPHltV~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~-- 131 (352)
T COG3842 87 ALFPHMTVEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFAD-- 131 (352)
T ss_pred ccCCCCcHHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhh--
Confidence 99999999999999987432111 1123456788999999998665
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
+++..|||||||||++||||+.+|++||||||.|+||..-+.++..-++++.+.. +.+.|.++|+..|++.++|||
T Consensus 132 ---R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI 207 (352)
T COG3842 132 ---RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRI 207 (352)
T ss_pred ---hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccce
Confidence 6677899999999999999999999999999999999999999999999987765 666777999999999999999
Q ss_pred EEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHh
Q 046656 368 ILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEV 408 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~ 408 (1326)
.+|++|+|...|+++++ |..|...-+|+|+-+.
T Consensus 208 ~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 208 AVMNDGRIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred EEccCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 99999999999999999 5678888888887653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=347.90 Aligned_cols=200 Identities=30% Similarity=0.384 Sum_probs=184.0
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC--cccccceEEEeecCCCCCCCCCHH
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK--QETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~--~~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
++++||||+++.||++||+|+|||||||+|++|+++.. |.+|.|++||.+.. +...++.+|.++.+..++..+|++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999987 46999999999863 345678899999888899999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD 993 (1326)
|||.|.+.+. ++...+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998876 45566778889999999999999999986 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 994 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 994 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
..+.+.+.+.++++.++|++||++||..+ ++.++||++++|++ |++++.|+.
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 99999999999999988999999999986 78889999999996 799999986
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=359.88 Aligned_cols=193 Identities=30% Similarity=0.432 Sum_probs=168.2
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc------c-ccceEEEeecCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE------T-FTRISGYCEQNDIHS 907 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gyv~Q~~~~~ 907 (1326)
..+|++||++|++||+++|+|||||||||||++|.|...+ .+|.|.++|.+.... . .++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998874 689999999876421 2 245799999999999
Q ss_pred CCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 046656 908 PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQ-SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986 (1326)
Q Consensus 908 ~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 986 (1326)
|.+||.||+.+...+... ....+++.++++++.+||.+..+ +.+ ..|||||||||+|||||+.+|+|||.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987655432 22255667899999999986665 544 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
|||.+||+++...|+++++++.++ |+|||++|||+ ++...|||++.|++|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999865 99999999997 5788999999999764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=349.89 Aligned_cols=217 Identities=26% Similarity=0.359 Sum_probs=185.5
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEE
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAY 202 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~y 202 (1326)
.++++.+.+.||+|||+.+++||+++|+|||||||||||+.|.|+++|+ +|+|.++|.++..... ++++|+
T Consensus 13 ~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~Gv 89 (263)
T COG1127 13 GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGV 89 (263)
T ss_pred eeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeE
Confidence 3445567888999999999999999999999999999999999999998 9999999999865432 467999
Q ss_pred EccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc
Q 046656 203 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV 282 (1326)
Q Consensus 203 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 282 (1326)
++|+-.+|..+||+||+.|..+-..- + |+ ...+..+..-|+.+||..
T Consensus 90 lFQ~gALFssltV~eNVafplre~~~---------l----------p~--------------~~i~~lv~~KL~~VGL~~ 136 (263)
T COG1127 90 LFQQGALFSSLTVFENVAFPLREHTK---------L----------PE--------------SLIRELVLMKLELVGLRG 136 (263)
T ss_pred EeeccccccccchhHhhheehHhhcc---------C----------CH--------------HHHHHHHHHHHHhcCCCh
Confidence 99999999999999999997653211 1 11 112233455588899986
Q ss_pred cccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHh
Q 046656 283 CADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD 362 (1326)
Q Consensus 283 ~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 362 (1326)
. +++.++..||||+|||+++|||++.+|+++|+||||+||||.++..+.+.++++.+..+ .|+++++|+.++++.
T Consensus 137 ~----~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-~T~i~VTHDl~s~~~ 211 (263)
T COG1127 137 A----AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG-LTVIMVTHDLDSLLT 211 (263)
T ss_pred h----hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC-CEEEEEECChHHHHh
Confidence 4 23478899999999999999999999999999999999999999999999999887665 555568999999999
Q ss_pred hCCeEEEecCCeEEEEcChhhHHH
Q 046656 363 LFDDIILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 363 ~~D~vilL~~G~iv~~G~~~~~~~ 386 (1326)
.||+|++|.+|+|+.+|+++++.+
T Consensus 212 i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 212 IADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hhceEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999863
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=356.00 Aligned_cols=200 Identities=25% Similarity=0.372 Sum_probs=175.3
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIG 211 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 211 (1326)
+.+....+|+|+|+.+.+||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+++ .+...++||+|++.++|
T Consensus 11 ~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlP 85 (248)
T COG1116 11 KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLP 85 (248)
T ss_pred EEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccc
Confidence 3344578999999999999999999999999999999999999998 999999999883 35678999999999999
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
-+||+||+.|+....+... .+...+++++|+.+||....| .
T Consensus 86 W~Tv~~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~-----~ 126 (248)
T COG1116 86 WLTVLDNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED-----K 126 (248)
T ss_pred hhhHHhhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh-----c
Confidence 9999999999987765211 111225678899999998876 6
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
+++.|||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+.. +.|++.++|+.+|+..++|||++|+
T Consensus 127 ~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~ 205 (248)
T COG1116 127 YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLS 205 (248)
T ss_pred CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEec
Confidence 788999999999999999999999999999999999999999999999987754 5667779999999999999999999
Q ss_pred C--CeEE
Q 046656 372 D--GQIV 376 (1326)
Q Consensus 372 ~--G~iv 376 (1326)
+ |+|.
T Consensus 206 ~~P~~i~ 212 (248)
T COG1116 206 NRPGRIG 212 (248)
T ss_pred CCCccee
Confidence 8 4553
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=361.62 Aligned_cols=205 Identities=28% Similarity=0.445 Sum_probs=185.6
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc---cCCc-ccccceEEEeecCCCCCCC
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY---PKKQ-ETFTRISGYCEQNDIHSPL 909 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~~ 909 (1326)
...+++|||+.|+.||++||+|||||||||||++|+|+.+ +..|.|.+||. +.++ ....|.+|||+|+..++++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4568999999999999999999999999999999999988 46999999999 5544 3345789999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 046656 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 989 (1326)
Q Consensus 910 ~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPt 989 (1326)
+||.+|+.|+...+ ....++.+.+.+++++|+.++|.++.+... ..||||||||+++||||+..|++|+||||+
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998776 344566777889999999999999998875 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 990 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 990 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
++||+.-+..+.+.|+++.++ |.|+|++|||+. +..+.+|||++|++ |+|.-.||..
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999999866 999999999986 89999999999996 7999999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=377.82 Aligned_cols=216 Identities=29% Similarity=0.395 Sum_probs=193.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|++..++ +..+|+|+|++|++||+++|+|||||||||||++|||+.. +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 477888877663 2229999999999999999999999999999999999987 5699999999988
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
+. ....|.+++|+|+..++|++||+||+.|+..++ ..++++.+++|+++.+.|+|.++.|+.. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 66 445688999999999999999999999998766 3467778889999999999999999885 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+++|++++||||.|+||++.+..+...|+++.++ |.|+|.+|||.. |...++||+.+|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999974 8889999999999 589999998
Q ss_pred CCC
Q 046656 1047 LGS 1049 (1326)
Q Consensus 1047 ~~~ 1049 (1326)
+.+
T Consensus 218 p~e 220 (338)
T COG3839 218 PLE 220 (338)
T ss_pred hHH
Confidence 743
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=379.23 Aligned_cols=219 Identities=34% Similarity=0.459 Sum_probs=190.6
Q ss_pred hhcccccc-cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC--CccceEEEEc
Q 046656 128 HILTTKKK-HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF--VPQRTAAYIS 204 (1326)
Q Consensus 128 ~~~~~~~~-~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~ 204 (1326)
.+++++++ .+.+|+|||+.+++|++++++||||||||||+|+|+|++.|+ +|+|.++|.+.... ..++.+||++
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEc
Confidence 35566777 689999999999999999999999999999999999999997 99999999887652 3357899999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|++.+++.+||+|||.|.+++.+.... .....++++++.+||++.+
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~ 130 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKA 130 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhh
Confidence 999999999999999999988764310 1123467889999999844
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+ ..+++||+||||||+||.||+++|+++||||||+|||+.++.++++.|++++.. ++++|+..+|...++..+|
T Consensus 131 ~-----~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~ 204 (293)
T COG1131 131 N-----KKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELC 204 (293)
T ss_pred C-----cchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhC
Confidence 3 456689999999999999999999999999999999999999999999999864 4466777899999999999
Q ss_pred CeEEEecCCeEEEEcChhhHHHHHH
Q 046656 365 DDIILLSDGQIVYQGPCELVLDFFE 389 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~~~F~ 389 (1326)
|+|++|++|++++.|+.+++...+.
T Consensus 205 d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 205 DRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred CEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 9999999999999999998876544
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=333.70 Aligned_cols=214 Identities=25% Similarity=0.325 Sum_probs=185.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
|.|+||+..|+. ++.+|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 578899877753 3569999999999999999999999999999999999877 46899999999864
Q ss_pred c------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 Q------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
. .-++|.+|+|+||..+.+..||+||+.|..... ..+..+.+++|.++|+.+||.+.++... ..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccC
Confidence 3 235789999999999999999999999987654 3455667788999999999999888764 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||+||++||||++.+|++|+.||||.+|||..+..||+++.++.+.|.|||+.|||.+ -+...-.|++.|.+ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999999999999999864 24444568888986 68887
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
....
T Consensus 218 d~~~ 221 (223)
T COG2884 218 DESR 221 (223)
T ss_pred cccc
Confidence 6543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=339.09 Aligned_cols=217 Identities=24% Similarity=0.327 Sum_probs=186.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC---CCCeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 885 (1326)
.++.+|++.+|+ .+.+|+|||+.|++++++||+|||||||||||++|.+.. ++-..+|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 577888887763 467999999999999999999999999999999999853 3346799999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGE 959 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~ 959 (1326)
.++.. ..+|+.+|.|+|.+..+| +|++||+.|+.++....+ ++.++.|++.|+...|++- .|++-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 88643 347889999999999999 999999999987764433 6677889999999999864 3443222 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.+|||||+|||||||||+-+|+||+||||||+|||.+...|-++|.+++ +.-|||++||.+. ......|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4699999999999999999999999999999999999999999999998 4799999999876 56778899999996 6
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++.+|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999986
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=378.43 Aligned_cols=217 Identities=28% Similarity=0.387 Sum_probs=194.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||+..+. +..+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578888887663 4679999999999999999999999999999999999987 4699999999998
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ...+|.+|+|+|+..+||++||+||+.|+..++ ....+++.+++|+++++.++|.++.++.+ ..|||||+
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 65 345788999999999999999999999987633 33455667789999999999999998876 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|+||||.|+||..-+..++.-++++.++ |.|.|++|||.. +...+.|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998754 999999999976 78889999999985 79999998
Q ss_pred CCC
Q 046656 1047 LGS 1049 (1326)
Q Consensus 1047 ~~~ 1049 (1326)
+.+
T Consensus 221 P~e 223 (352)
T COG3842 221 PEE 223 (352)
T ss_pred HHH
Confidence 753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=363.06 Aligned_cols=215 Identities=32% Similarity=0.438 Sum_probs=184.4
Q ss_pred ccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc---ceEEEEccCC
Q 046656 131 TTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ---RTAAYISQHD 207 (1326)
Q Consensus 131 ~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d 207 (1326)
+..++++++|+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+...+ |.+|||||..
T Consensus 9 s~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~ 85 (258)
T COG1120 9 SFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSP 85 (258)
T ss_pred EEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCC
Confidence 34456778999999999999999999999999999999999999998 99999999999876553 7899999998
Q ss_pred CCCCCCCHHHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 208 VHIGEMTVRETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
...+.+||+|-+.++..-. +.-.. . ..+....++..|+.+|+.+.++.
T Consensus 86 ~~~~~~tV~d~V~~GR~p~~~~~~~------~-------------------------~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 86 SAPFGLTVYELVLLGRYPHLGLFGR------P-------------------------SKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred CCCCCcEEeehHhhcCCcccccccC------C-------------------------CHhHHHHHHHHHHHhCcHHHhcC
Confidence 8888999999999975321 11000 0 01122357888999999999885
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
. +..|||||||||.||+||+.+|++|+||||||+||...+.++++.++++++. .+.++|+++|+...+..+||+
T Consensus 135 ~-----~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ryad~ 208 (258)
T COG1120 135 P-----VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAARYADH 208 (258)
T ss_pred c-----ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCE
Confidence 4 4569999999999999999999999999999999999999999999999865 456667789999999999999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
+++|++|+++.+|++++++
T Consensus 209 ~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 209 LILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred EEEEECCeEEeecCcchhc
Confidence 9999999999999998875
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=372.57 Aligned_cols=214 Identities=27% Similarity=0.427 Sum_probs=187.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 578899987763 3569999999999999999999999999999999999887 4689999999986
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++.+|||+|+..+++.+||+||+.|.+.++ ..+..+..++++++++.++|.+..++.++ +||+||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHH
Confidence 43 234678999999999999999999999866543 22334445568899999999988888774 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999986 68888999999986 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 5
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=332.16 Aligned_cols=212 Identities=30% Similarity=0.344 Sum_probs=185.4
Q ss_pred ccccccce-eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC--CccceEEEEccCC
Q 046656 131 TTKKKHLT-ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF--VPQRTAAYISQHD 207 (1326)
Q Consensus 131 ~~~~~~~~-iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d 207 (1326)
+++++.++ +++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+.... ..++.+|.++.+.
T Consensus 8 ~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~ 84 (245)
T COG4555 8 TKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGER 84 (245)
T ss_pred hhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCc
Confidence 34444444 899999999999999999999999999999999999998 99999999887432 2367899999888
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.++..||++|||.|.+++.+.. + .+.+.+++.+.+.|+|..|.|+.
T Consensus 85 glY~RlT~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~rR 130 (245)
T COG4555 85 GLYARLTARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDRR 130 (245)
T ss_pred ChhhhhhHHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHHH
Confidence 8899999999999998876532 1 12344578889999999999998
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
+| ++|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++.. .+.+|+..+|.++|+..+||+|
T Consensus 131 v~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 131 VG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred Hh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheE
Confidence 88 5999999999999999999999999999999999999999999998743 3667777899999999999999
Q ss_pred EEecCCeEEEEcChhhHHH
Q 046656 368 ILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~~ 386 (1326)
++|.+|++++.|+.+++..
T Consensus 204 ivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 204 IVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEEecCcEEEcCCHHHHHH
Confidence 9999999999999988753
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=334.36 Aligned_cols=225 Identities=24% Similarity=0.369 Sum_probs=183.4
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCCC-----ccceEEEEcc
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEFV-----PQRTAAYISQ 205 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q 205 (1326)
.++++.+|+|||+.|+++++||++|||||||||||++|....+ |..+++|+|.++|+++.+.. .|+++|.|+|
T Consensus 16 yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQ 95 (253)
T COG1117 16 YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQ 95 (253)
T ss_pred EECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeecc
Confidence 3456789999999999999999999999999999999988754 45678999999999986542 3688999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc-cc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV-CA 284 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~ 284 (1326)
.+.-|| +|++||+.|+.+.+|... +.+. .+++..|+.-.|.+ ..
T Consensus 96 kPnPFp-~SIydNVayG~r~~g~~~--~~ld--------------------------------eiVe~sLk~AaLWdEVK 140 (253)
T COG1117 96 KPNPFP-MSIYDNVAYGLRLHGIKD--KELD--------------------------------EIVESSLKKAALWDEVK 140 (253)
T ss_pred CCCCCC-chHHHHHHHhHHhhccch--HHHH--------------------------------HHHHHHHHHhHhHHHhH
Confidence 999998 999999999999987643 1111 11222222222221 12
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
|.+ ++...+|||||+||++|||||+-+|+|||||||||+|||.++..|-+.+.++.+ .-+|+.++|++.++.+..
T Consensus 141 DrL--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvS 215 (253)
T COG1117 141 DRL--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVS 215 (253)
T ss_pred HHh--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHh
Confidence 211 234567999999999999999999999999999999999999999999999853 556777899999999999
Q ss_pred CeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHH
Q 046656 365 DDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l 405 (1326)
|+...+..|++++.|+.+++ |..|.++...||+
T Consensus 216 D~taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 216 DYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred HhhhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999999988 5677777777765
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=349.52 Aligned_cols=206 Identities=27% Similarity=0.426 Sum_probs=175.2
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccC---CCCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH---DVHIGEMT 214 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~---d~~~~~lT 214 (1326)
++|+|||+.+++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+......+..+|||||. |+-| .+|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~f-P~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSF-PIT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCC-CcC
Confidence 5999999999999999999999999999999999999998 99999999988776666789999995 4444 479
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+|.+..+..-+. ..+ ....+ +.+..++++|+.+||.+.+|..+|
T Consensus 94 V~d~V~~g~~~~~--g~~---~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~----- 138 (254)
T COG1121 94 VKDVVLLGRYGKK--GWF---RRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIG----- 138 (254)
T ss_pred HHHHHHccCcccc--ccc---ccccH-------------------------HHHHHHHHHHHHcCchhhhCCccc-----
Confidence 9999998732211 001 11111 113457889999999999987666
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.|||||+|||-|||||+.+|++|+|||||+|+|+.++..|++.|+++.+. +.+|++++|+...+.++||+|+.|++ +
T Consensus 139 ~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~ 215 (254)
T COG1121 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-H 215 (254)
T ss_pred ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-e
Confidence 59999999999999999999999999999999999999999999999764 67777799999999999999999965 6
Q ss_pred EEEEcChhhHH
Q 046656 375 IVYQGPCELVL 385 (1326)
Q Consensus 375 iv~~G~~~~~~ 385 (1326)
+++.|+++++.
T Consensus 216 ~~~~G~~~~~~ 226 (254)
T COG1121 216 LIASGPPEEVL 226 (254)
T ss_pred eEeccChhhcc
Confidence 88999998875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=343.05 Aligned_cols=196 Identities=28% Similarity=0.413 Sum_probs=168.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 209 (1326)
.++|+++|+.|++||+++|+|||||||||||++|.|...|+ +|.|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999997 9999999988875542 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
+|++||+||+.+++.+.+...+ +.....+.+++.+||.+..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~---- 136 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL---- 136 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----
Confidence 9999999999987766543210 11233567889999986655
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.++..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++++. .++++++++|+. ++...|||++.
T Consensus 137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~-~lA~~~dr~i~ 214 (226)
T COG1136 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDP-ELAKYADRVIE 214 (226)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHhCCEEEE
Confidence 2456689999999999999999999999999999999999999999999999764 456666678875 67789999999
Q ss_pred ecCCeE
Q 046656 370 LSDGQI 375 (1326)
Q Consensus 370 L~~G~i 375 (1326)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=369.46 Aligned_cols=217 Identities=24% Similarity=0.303 Sum_probs=186.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.+ ...+.+|+||||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5788888776311 012469999999999999999999999999999999999887 46899999999864
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. ..++.+||++|+..+++..||+||+.|..... ..++.+.++++.++++.++|.+..|...+ .||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 31 13567999999999999999999999875432 23455566778999999999988887753 699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 57788999999985 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=336.33 Aligned_cols=217 Identities=26% Similarity=0.344 Sum_probs=180.1
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHDV 208 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 208 (1326)
..+++|+|||+.|++|||++|+|||||||||||++|.|..+++ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 5678999999999999999999999999999999999999988 9999999988765432 468999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+.+.+||.+|+..+..-+. +.+..+ .++.+. +.+..+-..|+.+|+.+.+.++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~sl---------fglfsk---------------~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRSL---------FGLFSK---------------EDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHHH---------hCCCCH---------------HHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998754221 111110 111111 11223455789999999888766
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+ .|||||+|||+|||||+.+|+++|-|||+++|||.++.++++.|++.+...+.|+| ..+|..+-+.++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi-~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVI-VNLHQVDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEE-EEechHHHHHHHHhhhe
Confidence 5 59999999999999999999999999999999999999999999999876555554 46777889999999999
Q ss_pred EecCCeEEEEcChhhHHH
Q 046656 369 LLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~~ 386 (1326)
-|++|+|+|+||++++-+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=352.98 Aligned_cols=213 Identities=25% Similarity=0.356 Sum_probs=180.5
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4667776652 2469999999999999999999999999999999999876 458999999987643
Q ss_pred ------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 891 ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 891 ------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
..+++.++|++|++.+++.+||+||+.+...... ..+.++..+.++++++.++|.+..++.++ .|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 1245679999999988999999999988643221 22344445678899999999887777654 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57778999999985 78999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 8874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=370.44 Aligned_cols=215 Identities=26% Similarity=0.363 Sum_probs=187.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67888877652 12469999999999999999999999999999999999877 46899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ...++.+|||+|+..++|.+||+||+.|+...+ ..++.+.+++++++++.++|.++.++.++ .|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHH
Confidence 3 223578999999999999999999999976432 23455556779999999999998888764 69999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||+. ++.+.+|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 999999999986 68889999999985 799999986
Q ss_pred C
Q 046656 1048 G 1048 (1326)
Q Consensus 1048 ~ 1048 (1326)
.
T Consensus 220 ~ 220 (356)
T PRK11650 220 V 220 (356)
T ss_pred H
Confidence 3
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=369.74 Aligned_cols=215 Identities=25% Similarity=0.367 Sum_probs=188.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 477888887663 3469999999999999999999999999999999999877 4689999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..+..+.+++++++++.++|.++.++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999986533 2345566678999999999999888775 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999986 78889999999996 79999998
Q ss_pred CC
Q 046656 1047 LG 1048 (1326)
Q Consensus 1047 ~~ 1048 (1326)
..
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 63
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=365.99 Aligned_cols=215 Identities=26% Similarity=0.382 Sum_probs=187.3
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 3588999987763 3569999999999999999999999999999999999887 458999999998
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 888 KKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 888 ~~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
... ...++.+||++|+..+++.+||+|++.|.+.+.. .+..+..+.++++++.++|.+..++.++ +||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHH
Confidence 643 2345679999999999999999999987654432 2333344567889999999988888774 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999986 68889999999986 7999999
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 86
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=368.36 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=189.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478889887763 3469999999999999999999999999999999999987 4689999999887
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
... ..+|.+|||+|+..++|.+||+||+.|+...+ ..++.+.+++++++++.++|.++.++.. ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 23578999999999999999999999986543 2345566778999999999999888775 36999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |+|+|++|||++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999996 79999998
Q ss_pred CC
Q 046656 1047 LG 1048 (1326)
Q Consensus 1047 ~~ 1048 (1326)
..
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 63
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=371.45 Aligned_cols=208 Identities=24% Similarity=0.359 Sum_probs=179.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 213 (1326)
+.+.+|+|+|+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.+|||+|++.++|++
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~ 91 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHM 91 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCC
Confidence 3457999999999999999999999999999999999999987 9999999998865443 47899999999999999
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.|+.+..+.. + .+....++++++.+||++..+ +.+
T Consensus 92 tv~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~-----~~~ 132 (356)
T PRK11650 92 SVRENMAYGLKIRGMP----------K------------------------AEIEERVAEAARILELEPLLD-----RKP 132 (356)
T ss_pred CHHHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhh-----CCh
Confidence 9999999986543210 0 011234677899999987766 455
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
+.|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|
T Consensus 133 ~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G 211 (356)
T PRK11650 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGG 211 (356)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 689999999999999999999999999999999999999999999998653 3566777899999999999999999999
Q ss_pred eEEEEcChhhHH
Q 046656 374 QIVYQGPCELVL 385 (1326)
Q Consensus 374 ~iv~~G~~~~~~ 385 (1326)
+++..|+++++.
T Consensus 212 ~i~~~g~~~~~~ 223 (356)
T PRK11650 212 VAEQIGTPVEVY 223 (356)
T ss_pred EEEEECCHHHHH
Confidence 999999999874
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=368.98 Aligned_cols=209 Identities=23% Similarity=0.362 Sum_probs=181.0
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 212 (1326)
++.+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.++||+|+..+||+
T Consensus 16 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 92 (351)
T PRK11432 16 FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPH 92 (351)
T ss_pred ECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCC
Confidence 34456899999999999999999999999999999999999998 9999999998876544 3789999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.|+.+.++... .+....++++++.+||.+..+ +.
T Consensus 93 ~tv~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~-----r~ 133 (351)
T PRK11432 93 MSLGENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFED-----RY 133 (351)
T ss_pred CCHHHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhc-----CC
Confidence 999999999865432210 012234677899999987665 45
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
++.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++
T Consensus 134 ~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 134 VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 66899999999999999999999999999999999999999999999986533 55667789999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|+++..|+++++.
T Consensus 213 G~i~~~g~~~~~~ 225 (351)
T PRK11432 213 GKIMQIGSPQELY 225 (351)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999873
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=369.68 Aligned_cols=209 Identities=27% Similarity=0.417 Sum_probs=180.8
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 212 (1326)
++.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.++||+|+..+||+
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~ 90 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPN 90 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCC
Confidence 34456999999999999999999999999999999999999988 9999999998865443 4789999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.|+.+.++.. + .+....++++++.+||++..| +.
T Consensus 91 ~tv~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~l~L~~~~~-----~~ 131 (353)
T TIGR03265 91 LTVADNIAYGLKNRGMG----------R------------------------AEVAERVAELLDLVGLPGSER-----KY 131 (353)
T ss_pred CcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCCchhh-----CC
Confidence 99999999986533211 0 011234678899999998776 45
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++
T Consensus 132 ~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~ 210 (353)
T TIGR03265 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNH 210 (353)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 66899999999999999999999999999999999999999999999986533 55667789999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|++++.|+++++.
T Consensus 211 G~i~~~g~~~~~~ 223 (353)
T TIGR03265 211 GVIEQVGTPQEIY 223 (353)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999884
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=369.95 Aligned_cols=212 Identities=23% Similarity=0.345 Sum_probs=182.0
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCcee--eEEEECCccCCCCCc-cceEEEEccCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVS--GRVTYNGHDMNEFVP-QRTAAYISQHDV 208 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~ 208 (1326)
++++.+.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ + |+|.++|.++....+ ++.++||+|+..
T Consensus 13 ~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~ 89 (362)
T TIGR03258 13 VAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYA 89 (362)
T ss_pred EEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcc
Confidence 3334456999999999999999999999999999999999999987 7 999999998865443 467999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
++|.+||+||+.|+.+..+... .+....++++++.+||++..|.
T Consensus 90 l~p~~tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~-- 133 (362)
T TIGR03258 90 LFPHLKVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAH-- 133 (362)
T ss_pred cCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhC--
Confidence 9999999999999865432110 0112346778999999887764
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.++.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|+
T Consensus 134 ---~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~ 210 (362)
T TIGR03258 134 ---LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAG 210 (362)
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEE
Confidence 45679999999999999999999999999999999999999999999998654325677778999999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+++++.
T Consensus 211 vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 211 IMKDGRLAAHGEPQALY 227 (362)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=367.84 Aligned_cols=215 Identities=25% Similarity=0.327 Sum_probs=188.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeE--EEEEEcCc
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS--GNITISGY 886 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~--G~i~i~g~ 886 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 477888887763 2469999999999999999999999999999999999877 457 99999998
Q ss_pred cCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 887 PKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 887 ~~~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
+... ...++.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++.++ .||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHH
Confidence 7643 223567999999999999999999999976433 24455566779999999999998888764 69999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999998876 799999999986 67889999999985 79999
Q ss_pred EcCCC
Q 046656 1044 VGPLG 1048 (1326)
Q Consensus 1044 ~G~~~ 1048 (1326)
.|+..
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=400.14 Aligned_cols=216 Identities=23% Similarity=0.345 Sum_probs=187.2
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++|+++.++. +++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|++
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46888998877631 23569999999999999999999999999999999999987 468999999988
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 888 KKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 888 ~~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. .+.++.++.++++++.++|.+..++.++ .||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 743 2345679999999999999999999999776542 2334445678999999999988888764 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|||||+||+||+.+|+||||||||+|||+.+++.+++.|++++ +|+|||++||+++ ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999985 5999999999986 57778999999996 7999999
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 85
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=345.65 Aligned_cols=214 Identities=25% Similarity=0.338 Sum_probs=188.3
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
+.++|++|.++. +..+|+|+|++|++||.++|+|+||||||||+++|+|... +.+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 578888888741 2579999999999999999999999999999999999987 45899999999854
Q ss_pred ----cccccceEEEeecCCCC-CCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 890 ----QETFTRISGYCEQNDIH-SPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 890 ----~~~~~~~~gyv~Q~~~~-~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
...+++.+|||+|++.. +..-||.|.+.|+..- ...+.++.+++++++++.+++.+++++.. ..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRPP-----FNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCC
Confidence 34567889999999755 4556999999998643 35566678889999999999999988775 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |.|||++|||.+ .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 799999999986 57788999999996 79999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=324.23 Aligned_cols=206 Identities=27% Similarity=0.362 Sum_probs=183.0
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccc----ccceEEEeecCCCCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET----FTRISGYCEQNDIHSP 908 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~~~~~ 908 (1326)
++++++++||+.|++||+|||+|||||||||.+.++.|+.. +.+|+|.+||.++.... .+.-+||+||+...|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 45789999999999999999999999999999999999987 45999999999886533 2335899999999999
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 988 (1326)
.+||+||++-....+.. +....+++++++++|+.+++.+++++... .||||||+|+.|||||+.+|+.++||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999876655532 23344666778999999999999998753 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 989 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
++|+||-+...|++.++.+++.|.-|++|-|... |....|||.+++.+ |+++..|+++
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 9999999999999999999999999999999987 78899999999996 7999999874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=343.93 Aligned_cols=210 Identities=29% Similarity=0.403 Sum_probs=176.6
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4667776652 2469999999999999999999999999999999999876 468999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046656 891 E-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969 (1326)
Q Consensus 891 ~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqr 969 (1326)
. ..++.++|++|++.+++.+|++||+.+..... .......++.++++++.+++.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHH
Confidence 2 23457899999998888899999998764322 12333445568899999999887777653 599999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 970 l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999986 57788999999986 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=332.24 Aligned_cols=217 Identities=28% Similarity=0.348 Sum_probs=179.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++.+|++..++... ....+|+||||+|.+||++||+|+||||||||.++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 467888877664321 11259999999999999999999999999999999999987 4699999999775
Q ss_pred Ccc----cccceEEEeecCCC--CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 046656 889 KQE----TFTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESG 961 (1326)
Q Consensus 889 ~~~----~~~~~~gyv~Q~~~--~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~ 961 (1326)
... .+++.+.+|+||+. +.|..||++.|.-.... ...++.++ ++.++++.+||.+- .++.. .+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R~P-----~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDRRP-----HE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhcCc-----hh
Confidence 432 36788999999974 56889999988755432 23333333 38999999999753 34432 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||+||||||+.+|++|+||||||+||+..++.|+++|.++.++ |.|+|++|||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999865 889999999987 47778999999996 79
Q ss_pred EEEEcCCC
Q 046656 1041 EIYVGPLG 1048 (1326)
Q Consensus 1041 ~~~~G~~~ 1048 (1326)
++..++.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999864
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=328.05 Aligned_cols=241 Identities=25% Similarity=0.384 Sum_probs=206.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+++++|+.++ +++.+++|+||.++||+++|++|+|||||||++++|.|... +.+|+|.++|.+.
T Consensus 2 ~L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcch
Confidence 35677777655 45789999999999999999999999999999999999987 5699999999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
++. .+.++||.|.+..+++.+||.|.|.|.|.+. .++.++.+..++.+|+.+++.......+. .||.|++|
T Consensus 67 ~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQ 137 (300)
T COG4152 67 SQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQ 137 (300)
T ss_pred hhh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhH
Confidence 754 3457899999999999999999999999887 56778888889999999999998888874 69999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
++.+-.+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|++. .+.++||++++|++ |+.|.+|+.
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v- 214 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV- 214 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH-
Confidence 999999999999999999999999999999999999999999999999999986 78899999999986 688888987
Q ss_pred CChhhHHHHHhhcC----cchhhHHhhhccCcccc
Q 046656 1049 SNSSDLISYLQLMP----MHVTFIFMKAISGVEKI 1079 (1326)
Q Consensus 1049 ~~~~~~~~~f~~~~----~~~~~~~~~~~~g~~~~ 1079 (1326)
.++..-|..-. .....+.+..+||+.+.
T Consensus 215 ---~~ir~~~Gkk~~~ies~~s~eeL~~ipgi~~~ 246 (300)
T COG4152 215 ---EDIRRSFGKKRLVIESDLSLEELANIPGILKI 246 (300)
T ss_pred ---HHHHHhcCCceEEEeccCchHHHhcCCCceee
Confidence 34433232211 22233455677777544
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=361.51 Aligned_cols=202 Identities=28% Similarity=0.395 Sum_probs=177.4
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCC
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ--ETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3579999999999999999999999999999999999877 458999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsg 991 (1326)
|+||+.+.+.++ ..+....++.++++++.++|.+..++.++ .||||||||++||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 22334445578999999999988887764 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 992 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 992 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 67788999999985 799999985
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=364.78 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=186.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 66788877653 2469999999999999999999999999999999999877 45899999998864
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ..++.+|||+|+..++|.+||+||+.|....+.. ...+.++.+++++++++.++|.++.++.+. .||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 32 2346799999999999999999999997643211 123445556789999999999988887763 6999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++.+.+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998865 899999999986 68889999999985 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 5
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=344.16 Aligned_cols=207 Identities=28% Similarity=0.397 Sum_probs=182.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCC----CCCccceEEEEccC-CCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN----EFVPQRTAAYISQH-DVHIG 211 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~-d~~~~ 211 (1326)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.++|.+.. ....++.+|||+|+ |..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999998 899999998865 22346789999999 56678
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
.-||.|.++|+.++.+... ++...+++.+++.+||.+..+ +
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~-----r 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLD-----R 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhcc-----C
Confidence 8899999999988776431 113345788899999998866 5
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+||.+|+.+|++++|||||||||+..+.++++.++++.. .++.++|.++|+.+.+.+++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 6778999999999999999999999999999999999999999999999865 345677779999999999999999999
Q ss_pred CCeEEEEcChhhHHH
Q 046656 372 DGQIVYQGPCELVLD 386 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~~ 386 (1326)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887753
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=314.90 Aligned_cols=196 Identities=27% Similarity=0.345 Sum_probs=172.6
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHH
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLY 918 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f 918 (1326)
..+++|++||++||+||||||||||+|+|+|... +.+|+|.|||.+... ....|-++.++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 5677899999999999999999999999999887 459999999998654 3456778999999999999999999987
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~ 998 (1326)
+..-.+ ... .+.+++++.++..+||..+.+++.+ .||||||||+++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643222 222 3345679999999999999998865 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 999 IVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 999 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
.+..++.++.+ ++.|++++||+|+ +.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999874 5899999999998 88899999999996 799999986
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=367.35 Aligned_cols=219 Identities=26% Similarity=0.378 Sum_probs=185.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 214 (1326)
.+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ +|.++||+|++.+||++|
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMT 102 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCC
Confidence 456899999999999999999999999999999999999987 9999999998865443 477999999999999999
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+||+.|+.+.++... .+....++++++.+||++..+. ++.
T Consensus 103 v~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~-----~p~ 143 (375)
T PRK09452 103 VFENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQR-----KPH 143 (375)
T ss_pred HHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhC-----Chh
Confidence 9999999865332110 0112245778999999877664 556
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.|||||||||+|||||+.+|++||||||+++||..++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+
T Consensus 144 ~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 899999999999999999999999999999999999999999999987643 5666778999999999999999999999
Q ss_pred EEEEcChhhHHHHHHhcCCCCCCCCChHHHH
Q 046656 375 IVYQGPCELVLDFFESMGFKCPERKSVADFL 405 (1326)
Q Consensus 375 iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l 405 (1326)
++..|+++++. ..|.....++|+
T Consensus 223 i~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 223 IEQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEEcCHHHHH--------hCcccHHHHHhc
Confidence 99999998873 345544445544
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=342.67 Aligned_cols=200 Identities=27% Similarity=0.392 Sum_probs=173.0
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999876 458999999987642 3567899999998888899999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
|+.+....+ ........+.++++++.+++.+..++.++ .||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 998865433 12333445678899999999887777653 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEec-CcEEEEEcCC
Q 046656 995 RAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1047 (1326)
Q Consensus 995 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~G~~ 1047 (1326)
.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ .|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999864 4899999999986 57788999999985 4899888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=362.27 Aligned_cols=206 Identities=23% Similarity=0.345 Sum_probs=177.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHDVHI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 210 (1326)
+++|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999998865432 45799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.|+....+... .+....+.++++.+||++..|
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~----- 135 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHD----- 135 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhh-----
Confidence 99999999998765432110 011223567899999988766
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
..+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+.. +.+|+.++|..+.+.++||+|++|
T Consensus 136 ~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4456799999999999999999999999999999999999999999999987643 456666899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998873
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=343.49 Aligned_cols=207 Identities=23% Similarity=0.320 Sum_probs=174.8
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++. +.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 467888776631 12469999999999999999999999999999999999876 45899999998753
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. .+++.++|++|++.+++.+||.||+.+....+ ....+..++.++++++.+++.+..++.++ .||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 21 13567999999998888999999998865432 12333445678999999999887777653 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999998777999999999986 566789999999864
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=364.50 Aligned_cols=214 Identities=23% Similarity=0.327 Sum_probs=187.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899987763 2469999999999999999999999999999999999887 4689999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++.+. .||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 43 223577999999999999999999999975433 23445556678999999999998888763 6999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++|||+. ++...+|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999986 68889999999985 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=378.98 Aligned_cols=213 Identities=27% Similarity=0.419 Sum_probs=178.4
Q ss_pred CceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc
Q 046656 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886 (1326)
Q Consensus 807 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 886 (1326)
+-.++|+||+|.|+. ++..+|+|+|++|+|||.+||+|+||||||||+|+|.|+.+ +..|+|++||+
T Consensus 469 ~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~ 535 (709)
T COG2274 469 QGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGV 535 (709)
T ss_pred CceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 447999999998853 22469999999999999999999999999999999999987 56999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 046656 887 PKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-------LRQSLVGL 956 (1326)
Q Consensus 887 ~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~vg~ 956 (1326)
++++ ..+|+.+|||+|++.++. -|++||+.++. .+.+. +.+.++++..+..+ -.|+.+|.
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCH----HHHHHHHHHhCcHHHHHhccccccccccc
Confidence 8754 567899999999988765 59999998753 22232 23445555555433 24566665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
. +.+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.+.. +|+|+|+++|+++ ..+.+|+|++|+
T Consensus 606 ~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~ 681 (709)
T COG2274 606 G-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLD 681 (709)
T ss_pred C-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEcc
Confidence 4 45899999999999999999999999999999999999999999999976 4899999999985 678999999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 682 ~-Gkiv~~gs~ 691 (709)
T COG2274 682 Q-GKIVEQGSH 691 (709)
T ss_pred C-CceeccCCH
Confidence 5 799999996
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=343.22 Aligned_cols=212 Identities=29% Similarity=0.381 Sum_probs=179.8
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 4667776552 3469999999999999999999999999999999999876 458999999987532
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 891 --ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 891 --~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
...++.++|++|+..+++.+||+|++.+....+ ..+.++.++.++++++.++|.+..++.++ .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHH
Confidence 223457899999998889999999998865433 12333345568999999999887777654 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999999999999999999998876 899999999986 57778999999986 788888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=358.06 Aligned_cols=214 Identities=27% Similarity=0.382 Sum_probs=183.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 477888887763 3469999999999999999999999999999999999876 4589999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++.+||++|+..+++.+||+|++.+.+... ..+.....+.++++++.++|.+..++.++ .|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 32 224567999999998888999999998755432 12333444567889999999888777764 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67788999999985 79999997
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=359.17 Aligned_cols=211 Identities=25% Similarity=0.358 Sum_probs=180.2
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVH 209 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 209 (1326)
++++.+.+|+|||+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.+
T Consensus 15 k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~ 91 (306)
T PRK13537 15 KRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNL 91 (306)
T ss_pred EEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcC
Confidence 3344567999999999999999999999999999999999999998 999999999875432 24679999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.|.++..+... .+....++++++.+||.+..++.+
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 136 (306)
T PRK13537 92 DPDFTVRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKV- 136 (306)
T ss_pred CCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCch-
Confidence 999999999998665433210 001123567889999988877655
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
++|||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.. .+++|+.++|..+++.++||+|++
T Consensus 137 ----~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~i 210 (306)
T PRK13537 137 ----GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCV 210 (306)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999854 356777789999999999999999
Q ss_pred ecCCeEEEEcChhhHHH
Q 046656 370 LSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~~ 386 (1326)
|++|++++.|+++++..
T Consensus 211 l~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 211 IEEGRKIAEGAPHALIE 227 (306)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=362.96 Aligned_cols=214 Identities=25% Similarity=0.363 Sum_probs=187.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588899987663 2469999999999999999999999999999999999987 4589999999876
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ...+|.+|||+|+..++|.+||.||+.|+...+ ..+..+.+++++++++.++|.++.++.+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999975433 2345556677999999999998888775 36999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 78899999999985 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=339.97 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=176.9
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4667766552 2469999999999999999999999999999999999876 468999999987643
Q ss_pred ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 046656 891 ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRL 970 (1326)
Q Consensus 891 ~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl 970 (1326)
..++.++|++|+..+++.+|++||+.+....+ .......++.++++++.+++.+..++.+ ..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 34567899999998888899999998865433 1233344556889999999988777665 36999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 971 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 971 ~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998877899999999986 56778999999986 6777654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=340.09 Aligned_cols=210 Identities=27% Similarity=0.394 Sum_probs=177.4
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 4677776653 2469999999999999999999999999999999999876 468999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046656 891 E-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969 (1326)
Q Consensus 891 ~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqr 969 (1326)
. ..++.++|++|++.+++..|++||+.+....+ ....++.++.++++++.+++.+..+..++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHH
Confidence 2 22457999999998888899999998864332 12334445568899999999887777654 599999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 970 l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998764 899999999986 57778999999986 6888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=361.68 Aligned_cols=209 Identities=20% Similarity=0.290 Sum_probs=180.4
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQH 206 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 206 (1326)
++.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 34567999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
+.+++++||+||+.|+.+..+... .+....+.++++.+||+...+.
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~ 125 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHR 125 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhC
Confidence 999999999999999765443210 0112245678999999876664
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+..|||||||||+|||||+.+|+++||||||+|||+.++.++.+.++++.+. .+.+|+.++|+..++..++|+
T Consensus 126 -----~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~dr 199 (363)
T TIGR01186 126 -----YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDR 199 (363)
T ss_pred -----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 45579999999999999999999999999999999999999999999988553 355677789999999999999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|++|+++..|+++++.
T Consensus 200 I~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 200 IVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=314.16 Aligned_cols=200 Identities=26% Similarity=0.381 Sum_probs=177.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDVHI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 210 (1326)
..+|+|||+.|++||++.|+||||||||||||.|.+...|+ .|+|.+||+++.... .+|++|+|+|+..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 55999999999999999999999999999999999999998 999999999986543 258899999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
++.||.||++|+.+..|... .+.+..+.++|+.+||.+.++
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~----- 132 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKAR----- 132 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhh-----
Confidence 99999999999988765422 123445778899999998876
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
..+..|||||||||+||||++.+|++|+-||||..||+..+.+|++.+.++.. .||+|++.+|+..-+..+-.+++.|
T Consensus 133 ~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 133 ALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred cCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 45678999999999999999999999999999999999999999999999854 4788888899998888888999999
Q ss_pred cCCeEEEEcC
Q 046656 371 SDGQIVYQGP 380 (1326)
Q Consensus 371 ~~G~iv~~G~ 380 (1326)
++|+++.+..
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=360.56 Aligned_cols=204 Identities=25% Similarity=0.300 Sum_probs=179.4
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cc----cceEEEeecCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TF----TRISGYCEQNDI 905 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~~~ 905 (1326)
+.+.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34569999999999999999999999999999999999987 4699999999887532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 046656 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985 (1326)
Q Consensus 906 ~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illL 985 (1326)
+++.+||+||+.|...+. ..+.++..+++.++++.++|.+..++.++ .|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 23455666789999999999888887764 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 986 DEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 986 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
||||++||+.++..+++.++++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999998754 899999999986 57888999999985 7999999753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=361.33 Aligned_cols=217 Identities=24% Similarity=0.302 Sum_probs=184.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|++++++.. ..++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5678888776411 013569999999999999999999999999999999999887 46899999998864
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. ..++.+||++|+..+++.+||+||+.+....+ ..+..+.++.++++++.++|.+..++.++ .||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPA-----QLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 31 13567999999999999999999999875433 23344445678999999999888777653 699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 57788999999985 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99975
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=344.47 Aligned_cols=215 Identities=28% Similarity=0.368 Sum_probs=179.3
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4567766552 2469999999999999999999999999999999999876 458999999987643
Q ss_pred cc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046656 891 ET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTE-------VDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959 (1326)
Q Consensus 891 ~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 959 (1326)
.. .++.++|++|++.+++.+||+|++.+......... .......+.++++++.+++.+..++.++
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG---- 142 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh----
Confidence 21 23458999999999999999999988654321110 1123345568899999999887776653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 143 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 143 -ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 59999999999999999999999999999999999999999999998877999999999986 57788999999986 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=363.97 Aligned_cols=214 Identities=26% Similarity=0.374 Sum_probs=185.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887663 3469999999999999999999999999999999999877 4589999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
... ..++.+||++|+..+++.+||+||+.|....+ ..+..+.+++++++++.++|.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 432 23467999999999999999999999876433 22344555678999999999988887764 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 67888999999995 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=311.64 Aligned_cols=201 Identities=22% Similarity=0.356 Sum_probs=172.8
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHH
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
.+++.+++||+++|+|||||||||||+.|+|...|. +|+|.+||.+.....| +|.++.++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478889999999999999999999999999999998 9999999999876555 578999999999999999999999
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
++.. ++-+ +.. +..+.++.++..+||..+.+. .+..|||||
T Consensus 94 LGl~---P~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~R-----LP~~LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKR-----LPGELSGGQ 134 (231)
T ss_pred ccCC---cccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhh-----CccccCchH
Confidence 8743 1111 111 112346778999999988774 456799999
Q ss_pred hHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcC
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 380 (1326)
||||++||+|+++.+|++||||+|+|||.-+.+....+.+++...+ .|+++++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~-~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK-MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 9999999999999999999999999999999999999999987654 555557777789999999999999999999999
Q ss_pred hhhHH
Q 046656 381 CELVL 385 (1326)
Q Consensus 381 ~~~~~ 385 (1326)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=340.88 Aligned_cols=215 Identities=28% Similarity=0.433 Sum_probs=179.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. .....+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 4677887766311 011269999999999999999999999999999999999876 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 890 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 890 ~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
. ..+++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+++.+..++.++ .||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHH
Confidence 3 234567999999998888899999998765432 22344445678999999999887777654 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999986 6777644
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=343.24 Aligned_cols=217 Identities=27% Similarity=0.391 Sum_probs=181.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367888887663 2469999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
... ..++.++|++|++.+++.+||.||+.+....+.. .........+.++++++.++|.+..++.++ .|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHH
Confidence 432 2245689999999888889999999886543211 001223334568899999999877777653 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999998765 899999999986 57788999999985 7899988
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 75
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=364.36 Aligned_cols=218 Identities=26% Similarity=0.358 Sum_probs=185.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 367888887663 3579999999999999999999999999999999999877 4689999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL-RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ...++.+||++|+..+++.+||+|++.++..... .........++.++++++.+++.+..++.+. .|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 43 2356779999999999899999999988542111 0111122344678999999999988888764 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||||+.|||||+++|++|||||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 67789999999985 799999
Q ss_pred cCCC
Q 046656 1045 GPLG 1048 (1326)
Q Consensus 1045 G~~~ 1048 (1326)
|+.+
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=361.63 Aligned_cols=213 Identities=27% Similarity=0.363 Sum_probs=179.6
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 212 (1326)
++.+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.++++
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~ 88 (353)
T PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRH 88 (353)
T ss_pred eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCC
Confidence 33456999999999999999999999999999999999999987 9999999998865433 3679999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.|+.+....... ..+ .+....++++++.+||++..| ++
T Consensus 89 ~tv~eni~~~~~~~~~~~~------~~~------------------------~~~~~~~~~~l~~~~L~~~~~-----~~ 133 (353)
T PRK10851 89 MTVFDNIAFGLTVLPRRER------PNA------------------------AAIKAKVTQLLEMVQLAHLAD-----RY 133 (353)
T ss_pred CcHHHHHHhhhhhcccccC------CCH------------------------HHHHHHHHHHHHHcCCchhhh-----CC
Confidence 9999999997653210000 000 011234677899999987665 45
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.+. .+.+++.++|+..++..++|+|++|++
T Consensus 134 ~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~ 212 (353)
T PRK10851 134 PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQ 212 (353)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6689999999999999999999999999999999999999999999998653 356677789999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|++++.|+++++.
T Consensus 213 G~i~~~g~~~~i~ 225 (353)
T PRK10851 213 GNIEQAGTPDQVW 225 (353)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999884
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=354.66 Aligned_cols=213 Identities=26% Similarity=0.392 Sum_probs=184.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 367788877663 3569999999999999999999999999999999999876 4689999999876
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++.+||++|++.+++.+||.||+.|.+.++ ..+.++..+.++++++.++|.+..++.++ .|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHH
Confidence 43 234567999999999999999999999876543 22334445568999999999988887764 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||++||+||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999865 799999999986 68889999999985 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 216 ~ 216 (301)
T TIGR03522 216 L 216 (301)
T ss_pred H
Confidence 6
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=342.46 Aligned_cols=212 Identities=27% Similarity=0.375 Sum_probs=179.2
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4667776552 3469999999999999999999999999999999999876 468999999987542
Q ss_pred c---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 891 E---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 891 ~---~-~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
. . .++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 2346899999999999999999998764332 1223344456889999999988777665 3699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999998877999999999986 68888999999985 78888887
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=363.20 Aligned_cols=208 Identities=23% Similarity=0.335 Sum_probs=179.4
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 213 (1326)
+.+.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.+|||+|++.+||++
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~l 106 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHM 106 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCC
Confidence 3456999999999999999999999999999999999999988 9999999998865433 47899999999999999
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.|+.+.++.. + .+....++++++.+||.+..+ ..+
T Consensus 107 tv~eNi~~~l~~~~~~----------~------------------------~~~~~~v~~~l~~l~L~~~~~-----~~~ 147 (377)
T PRK11607 107 TVEQNIAFGLKQDKLP----------K------------------------AEIASRVNEMLGLVHMQEFAK-----RKP 147 (377)
T ss_pred CHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhc-----CCh
Confidence 9999999976543211 0 011234677899999987665 456
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
.+|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.+.. +.+++.++|+..++..++|+|++|++|
T Consensus 148 ~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G 226 (377)
T PRK11607 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRG 226 (377)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCC
Confidence 6899999999999999999999999999999999999999999999886544 466677899999999999999999999
Q ss_pred eEEEEcChhhHH
Q 046656 374 QIVYQGPCELVL 385 (1326)
Q Consensus 374 ~iv~~G~~~~~~ 385 (1326)
+++..|+++++.
T Consensus 227 ~i~~~g~~~~~~ 238 (377)
T PRK11607 227 KFVQIGEPEEIY 238 (377)
T ss_pred EEEEEcCHHHHH
Confidence 999999999874
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=339.46 Aligned_cols=207 Identities=29% Similarity=0.397 Sum_probs=172.1
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++.. ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 567777665310 011569999999999999999999999999999999999876 468999999987643
Q ss_pred cc-------ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 891 ET-------FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 891 ~~-------~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.++|.+..++.++ .||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPS-----ELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcChh-----hcC
Confidence 11 23579999999999999999999998654331 2233344568899999999887776653 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++ +.+|++++|++|
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~G 216 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRDG 216 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeCC
Confidence 9999999999999999999999999999999999999999999976 5899999999986 34 489999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=373.97 Aligned_cols=213 Identities=28% Similarity=0.448 Sum_probs=181.2
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
-.|+|+||+++|+.. ++.++|+|+||+|+|||.||||||||+||||+.++|.+.+. |.+|+|.+||+|
T Consensus 464 G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 379999999999864 34679999999999999999999999999999999999877 569999999999
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH-------cCCcccccccccCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMEL-------VELKPLRQSLVGLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~-------l~l~~~~~~~vg~~ 957 (1326)
+++ ..+++++|+|.|++.++. -||+|||.|+.. +.+.++ ++++.++ .++.+-.|+.+|..
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~----i~~AAk~ANah~FI~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEE----IEAAAKMANAHEFITNFPDGYNTVVGEK 601 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCccccccccCCc
Confidence 764 456789999999999986 599999999753 333332 2222222 24556678889876
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
|. .||||||||++|||||++||+||||||+||.||+++...|+++|.+..+ ++|||+++|+.+ ..+.+|+|+++++
T Consensus 602 G~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 602 GS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK 677 (716)
T ss_pred cc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC
Confidence 54 6999999999999999999999999999999999999999999998875 699999999976 5688999999986
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|..
T Consensus 678 -G~V~E~G~h 686 (716)
T KOG0058|consen 678 -GRVVEMGTH 686 (716)
T ss_pred -CeEEecccH
Confidence 799999975
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=337.07 Aligned_cols=206 Identities=30% Similarity=0.397 Sum_probs=174.7
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 4667766552 2469999999999999999999999999999999999876 468999999987643
Q ss_pred -ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046656 891 -ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969 (1326)
Q Consensus 891 -~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqr 969 (1326)
...++.++|++|++.+++..||+||+.+....+. . .++.++++++.+++.+..++.++ .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHH
Confidence 2335678999999988889999999988654321 1 13457889999999887777653 599999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 970 l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998877899999999986 56678999999986 6887754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=341.38 Aligned_cols=213 Identities=24% Similarity=0.294 Sum_probs=176.2
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC-----CCCeeEEEEEEcC
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYISGNITISG 885 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~-----~~~~~~G~i~i~g 885 (1326)
+++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4667766552 246999999999999999999999999999999999987 5 4689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 960 (1326)
.++.. ..+++.+||++|++.++ .+||+||+.+....+. .......+++++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 22456799999998877 7899999988654331 11122234568899999999876665420 24
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||+++ ++.+.+|++++|++ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 69999999999999999999999999999999999999999999999876 99999999986 57778999999986 78
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 218 i~~~g~~ 224 (227)
T cd03260 218 LVEFGPT 224 (227)
T ss_pred EEEecCc
Confidence 9998875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=341.20 Aligned_cols=217 Identities=24% Similarity=0.318 Sum_probs=181.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4677887765310 001269999999999999999999999999999999999877 46899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 124678999999999989999999988654331 233344556889999999988777765 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 56778999999985 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=346.92 Aligned_cols=203 Identities=26% Similarity=0.307 Sum_probs=173.8
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---c----ccceEEEeecCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---T----FTRISGYCEQNDI 905 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~ 905 (1326)
+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999876 4589999999876421 1 1356899999998
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 046656 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985 (1326)
Q Consensus 906 ~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illL 985 (1326)
+++.+||+||+.+..... ........+.++++++.++|.+..++.++ .||||||||++|||||+.+|+||||
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999998865332 12233445568899999999888777764 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 986 DEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 986 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999986 57788999999985 788998875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=336.57 Aligned_cols=206 Identities=26% Similarity=0.349 Sum_probs=173.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 46777777652 12469999999999999999999999999999999999876 45899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. .+++.++|++|++.+++.+|++||+.+....+ .......++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 23567899999998888899999998865432 1223344567889999999987766665 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 677789999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=325.52 Aligned_cols=205 Identities=26% Similarity=0.309 Sum_probs=177.4
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC----ccceEEEEccCC--CCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV----PQRTAAYISQHD--VHIG 211 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 211 (1326)
++|+|||+++.+||.++|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+|++ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 5999999999999999999999999999999999999998 999999998776542 346799999985 4678
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
..||++.|.-+.+..+.++ ....+.++|+.+||+...- ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l----~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFL----DR 137 (252)
T ss_pred chhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHH----hc
Confidence 8999999987665433211 1112567899999986443 46
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+|||||+.+|++|++|||||+||++.+.+|++.|.++.+. .+.+++.++|+..-+..+||||+||+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeee
Confidence 78899999999999999999999999999999999999999999999998764 56778889999999999999999999
Q ss_pred CCeEEEEcChhhHHH
Q 046656 372 DGQIVYQGPCELVLD 386 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~~ 386 (1326)
+|++++.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998853
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=343.71 Aligned_cols=204 Identities=29% Similarity=0.336 Sum_probs=171.1
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc------cccceEEEeecCCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE------TFTRISGYCEQNDIHSP 908 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~~ 908 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 469999999999999999999999999999999999876 4589999999876421 23567899999998888
Q ss_pred CCCHHHHHHHHHHhh-----ccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 046656 909 LVTVYESLLYSAWLR-----LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSII 983 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~il 983 (1326)
.+||+||+.+..... ...........+.++++++.+++.+..++.+ ..||||||||++|||+|+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 899999998753210 0001111233456888999999987776655 369999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 984 FMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 984 lLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999998764 899999999987 57778999999985 789998875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=327.20 Aligned_cols=226 Identities=28% Similarity=0.368 Sum_probs=191.9
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc----ceEEEEc
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ----RTAAYIS 204 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 204 (1326)
.++++.+...+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|.+++...+. .-++--+
T Consensus 9 ~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTF 85 (250)
T COG0411 9 GLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTF 85 (250)
T ss_pred cceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeec
Confidence 4567778889999999999999999999999999999999999999998 99999999999877654 3467889
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|...+|++|||.||+..++..+.. +.......+ ...+..+....+..+|+.+||.+.+
T Consensus 86 Q~~rlF~~lTVlENv~va~~~~~~---~~~~l~~~~-------------------~~~~e~~~~e~A~~~Le~vgL~~~a 143 (250)
T COG0411 86 QITRLFPGLTVLENVAVGAHARLG---LSGLLGRPR-------------------ARKEEREARERARELLEFVGLGELA 143 (250)
T ss_pred ccccccCCCcHHHHHHHHhhhhhh---hhhhhcccc-------------------chhhHHHHHHHHHHHHHHcCCchhh
Confidence 999999999999999998764421 000000000 0001123345577899999999999
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
|+..| +||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+ .++.+|+.|-|+++-+..+|
T Consensus 144 ~~~A~-----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~ 217 (250)
T COG0411 144 DRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLA 217 (250)
T ss_pred cchhh-----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhc
Confidence 98777 4999999999999999999999999999999999999999999999865 35678888999999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|||+||+.|+++.+|+++++.
T Consensus 218 dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 218 DRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred cEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999986
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=340.85 Aligned_cols=214 Identities=22% Similarity=0.341 Sum_probs=180.7
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46777776652 2469999999999999999999999999999999999876 46899999998764
Q ss_pred c-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 890 Q-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 890 ~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
. ...++.++|++|+..+++.+||+||+.+..... .........+.+.++++.+++.+..+..+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 123567899999998888899999998754211 12233444566889999999987777665 36999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999998877999999999986 56778999999985 799999
Q ss_pred cCC
Q 046656 1045 GPL 1047 (1326)
Q Consensus 1045 G~~ 1047 (1326)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=341.47 Aligned_cols=209 Identities=28% Similarity=0.357 Sum_probs=173.9
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHD 207 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d 207 (1326)
++.+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~ 86 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCc
Confidence 34457999999999999999999999999999999999999987 999999998875432 245799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+++.+||+||+.++........ . .+....++.+++.+||++..++
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~- 132 (235)
T cd03261 87 ALFDSLTVFENVAFPLREHTRLS---------E------------------------EEIREIVLEKLEAVGLRGAEDL- 132 (235)
T ss_pred ccCCCCcHHHHHHHHHhhccCCC---------H------------------------HHHHHHHHHHHHHcCCchhhcC-
Confidence 88999999999998643210000 0 0011235667899999776654
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+.+++.++||+|
T Consensus 133 ----~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v 207 (235)
T cd03261 133 ----YPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRI 207 (235)
T ss_pred ----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEE
Confidence 44579999999999999999999999999999999999999999999998653 3456677889999999999999
Q ss_pred EEecCCeEEEEcChhhH
Q 046656 368 ILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~ 384 (1326)
++|++|++++.|+++++
T Consensus 208 ~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 208 AVLYDGKIVAEGTPEEL 224 (235)
T ss_pred EEEECCeEEEecCHHHH
Confidence 99999999999998765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=337.05 Aligned_cols=221 Identities=38% Similarity=0.622 Sum_probs=180.5
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC-CeeEEEEEEcCccC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITISGYPK 888 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 888 (1326)
+.|+|+++.++.. +..+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4577887766311 0135799999999999999999999999999999999998651 13589999999877
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEE-IMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.....++.++|++|++.+++.+||+||+.|..................+++ .++.+++.++.++.+ ..||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544456779999999999999999999998754432222122222334555 899999987776655 36999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999984468889999999986 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=336.01 Aligned_cols=192 Identities=29% Similarity=0.387 Sum_probs=163.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCC-CCCCCCHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDI-HSPLVTVY 913 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~~Tv~ 913 (1326)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+......++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999876 468999999987644344567999999974 34467999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD 993 (1326)
||+.+..... . . ..+.++++++.+++.+..++.++ .||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 12457899999999988777653 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 994 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 994 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999998777999999999986 56678999999986 5653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=348.93 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=180.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++... ...+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67888887764110 012469999999999999999999999999999999999877 46899999998864
Q ss_pred cc-----cccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 046656 890 QE-----TFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK--PLRQSLVGLPGESG 961 (1326)
Q Consensus 890 ~~-----~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~vg~~~~~~ 961 (1326)
.. ..++.+||++|++. .+...||+||+.|..... ..+.++..+.++++++.++|. +..++.+ ..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 31 34567999999863 334579999999865322 344555566789999999997 5566654 46
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 56778999999986 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999975
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=341.99 Aligned_cols=214 Identities=26% Similarity=0.354 Sum_probs=180.5
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888887663 2469999999999999999999999999999999999876 45899999998753
Q ss_pred c-----------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046656 890 Q-----------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG 958 (1326)
Q Consensus 890 ~-----------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 958 (1326)
. ...++.++|++|++.+++..|++||+.+...... ........+.++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1234578999999988888999999987542111 2233344566889999999987776655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.+|++++|++
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 369999999999999999999999999999999999999999999998877999999999986 57788999999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 789998874
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=360.12 Aligned_cols=209 Identities=25% Similarity=0.390 Sum_probs=178.0
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 212 (1326)
++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.
T Consensus 13 ~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~ 89 (369)
T PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPH 89 (369)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCC
Confidence 33456999999999999999999999999999999999999987 9999999998765433 4679999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.|+.+..+.. + .+....++++++.+||++..+. .
T Consensus 90 ~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~lgL~~~~~~-----~ 130 (369)
T PRK11000 90 LSVAENMSFGLKLAGAK----------K------------------------EEINQRVNQVAEVLQLAHLLDR-----K 130 (369)
T ss_pred CCHHHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcC-----C
Confidence 99999999976533210 0 0112235678999999876664 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..+||+|++|++
T Consensus 131 ~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 55799999999999999999999999999999999999999999999986533 55667789999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|+++..|+++++.
T Consensus 210 G~i~~~g~~~~i~ 222 (369)
T PRK11000 210 GRVAQVGKPLELY 222 (369)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=352.73 Aligned_cols=208 Identities=26% Similarity=0.351 Sum_probs=177.5
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 212 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 3457999999999999999999999999999999999999988 999999998875321 23579999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.|.++..+... .+....++++++.+||++..++.+
T Consensus 81 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 122 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPV---- 122 (302)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCch----
Confidence 999999998765433110 001123567899999987777554
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+ .+++|+.++|..+++.++||+|++|++
T Consensus 123 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~tvi~~sH~~~~~~~~~d~v~~l~~ 199 (302)
T TIGR01188 123 -GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTILLTTHYMEEADKLCDRIAIIDH 199 (302)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 56999999999999999999999999999999999999999999999864 256677789999999999999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|++++.|+++++.+
T Consensus 200 G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 200 GRIIAEGTPEELKR 213 (302)
T ss_pred CEEEEECCHHHHHH
Confidence 99999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=336.80 Aligned_cols=213 Identities=26% Similarity=0.394 Sum_probs=178.5
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 46677766531 11469999999999999999999999999999999999876 468999999987643
Q ss_pred --ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 891 --ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 891 --~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
...++.++|++|+..+++..|++||+.+....+. .+.....+.++++++.++|.+..++.++ .||+||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHH
Confidence 2345679999999988889999999988654331 2333344568899999999877776653 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++ |++++.|+.
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999875 699999999986 56678999999985 788888874
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=341.23 Aligned_cols=212 Identities=27% Similarity=0.363 Sum_probs=178.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 45677776652 2469999999999999999999999999999999999876 45899999998764
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046656 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqr 969 (1326)
. ..+.+||++|+..+++..||.||+.+....+ .....+..+.++++++.++|.+..++.+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999998888899999998764332 2233444556899999999987777654 3699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEec-CcEEEEEcCC
Q 046656 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1047 (1326)
Q Consensus 970 l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~G~~ 1047 (1326)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57788999999985 5899888764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=336.75 Aligned_cols=217 Identities=25% Similarity=0.323 Sum_probs=179.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++.. ...+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 37888998876311 011469999999999999999999999999999999999876 4689999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046656 889 KQET------F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961 (1326)
Q Consensus 889 ~~~~------~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 961 (1326)
.... . ++.++|++|+..+++.+|++||+.+....+ ....++.+++++++++.++|.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 1 256899999998888899999998865432 1233344567899999999988777665 36
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 34 45689999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9998875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=343.89 Aligned_cols=218 Identities=26% Similarity=0.284 Sum_probs=178.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 45677776552 12459999999999999999999999999999999999876 46899999998754
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhh-----ccCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLR-----LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG 958 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 958 (1326)
.. .+++.+||++|+..+++.+||+||+.+..... ..........+++++++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 21 23567999999998888899999997642110 0001112233456889999999987777665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 369999999999999999999999999999999999999999999998754 899999999986 56778999999985
Q ss_pred CcEEEEEcCCC
Q 046656 1038 GGQEIYVGPLG 1048 (1326)
Q Consensus 1038 gg~~~~~G~~~ 1048 (1326)
|++++.|+..
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 7889888753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=334.99 Aligned_cols=193 Identities=27% Similarity=0.375 Sum_probs=166.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc------cccceEEEeecCCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE------TFTRISGYCEQNDIHSP 908 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~~ 908 (1326)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999876 4689999999876421 24567999999999999
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 988 (1326)
.+|++||+.+....+. ...+..++.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++|+||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654321 233444556889999999988777665 36999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 989 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
|+|||+.++..+.+.|+++.++|+|||++||++. .+.+.+|++++|++|
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999998777999999999986 566789999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=354.76 Aligned_cols=214 Identities=25% Similarity=0.349 Sum_probs=180.7
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccC
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQH 206 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~ 206 (1326)
+++++++++.+|+|||+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+||++|+
T Consensus 46 nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~ 122 (340)
T PRK13536 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQF 122 (340)
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCC
Confidence 3344445567999999999999999999999999999999999999998 999999999875432 24679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
+.+++.+||+||+.|.....+... .+....++.+++.+||++..++
T Consensus 123 ~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~ 168 (340)
T PRK13536 123 DNLDLEFTVRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADA 168 (340)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCC
Confidence 999999999999997554432100 0011234567889999887776
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.++ +|||||||||+||+||+.+|++++|||||+|||+.++.++++.|+++.. .+++|+.++|..+++.++||+
T Consensus 169 ~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 169 RVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCE
Confidence 554 6999999999999999999999999999999999999999999999864 356677789999999999999
Q ss_pred EEEecCCeEEEEcChhhHHH
Q 046656 367 IILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~ 386 (1326)
|++|++|+++++|+++++..
T Consensus 242 i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 242 LCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred EEEEECCEEEEEcCHHHHHh
Confidence 99999999999999998864
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=345.59 Aligned_cols=215 Identities=26% Similarity=0.343 Sum_probs=180.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ +++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 367888887763 12359999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc---cccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQE---TFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
... ..++.+||++|++. .++..||.||+.|..... ..+.....+.++++++.++|.+..++.+. .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCH
Confidence 432 23457999999863 445679999998864321 23344445668999999999888777754 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 56688999999985 789999
Q ss_pred cCC
Q 046656 1045 GPL 1047 (1326)
Q Consensus 1045 G~~ 1047 (1326)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 985
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=340.22 Aligned_cols=201 Identities=28% Similarity=0.386 Sum_probs=172.5
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 459999999999999999999999999999999999876 458999999987542 233567899999999998999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP--LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 989 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPt 989 (1326)
++||+.+...++ ..+.....+.++++++.+++.+ ..++.+ ..||||||||++|||+|+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999998865432 2233444566889999999985 566654 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 990 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 990 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999998764 899999999986 57788999999985 788888874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=336.72 Aligned_cols=210 Identities=28% Similarity=0.421 Sum_probs=174.7
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCC
Confidence 4667766542 2469999999999999999999999999999999999876 468999999987643
Q ss_pred cc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHH
Q 046656 891 ET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV-ELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 891 ~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~vg~~~~~~LSgG 965 (1326)
.. .++.++|++|++.+++.+|++||+.+...... .....+.+.++++.+ ++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHH
Confidence 21 24568999999999999999999988654321 122334567788887 4666666654 359999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 214 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEG 214 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeC
Confidence 999999999999999999999999999999999999999998877899999999986 57788999999985 7888888
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 215 ~~ 216 (222)
T cd03224 215 TA 216 (222)
T ss_pred CH
Confidence 74
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=343.43 Aligned_cols=215 Identities=20% Similarity=0.311 Sum_probs=181.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478899987663 3469999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 KQE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
... ..++.++|++|+..+++.+|+.||+.+..... ...+....++.+.++++.+++.+..++.++ .|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH--TQLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----EL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHcCChhhhhCChh-----hC
Confidence 421 13456899999998888899999998754221 112333344567889999999887777653 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 999875
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=315.03 Aligned_cols=215 Identities=21% Similarity=0.349 Sum_probs=185.0
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc----ceEEEEc
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ----RTAAYIS 204 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 204 (1326)
++.++++++++++|||+.+++||+++++|||||||||...++.|+.+|+ +|+|.++|.+++..... .-+||+|
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCccccc
Confidence 4456778889999999999999999999999999999999999999998 99999999999876442 3589999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|++..|..+||+|||.-..+.+.... ...+.+...+.+|+.+.|.+++
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr 133 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLR 133 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHh
Confidence 99999999999999987654431100 0012233467889999999998
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+.. ...||||||||+-|||||+.+|+.++||||++|+||-+..+|-+.++.+.. ++.-|+..-|+..|+...|
T Consensus 134 ~~~-----a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~ 206 (243)
T COG1137 134 DSK-----AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDIC 206 (243)
T ss_pred cCc-----ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhh
Confidence 854 447999999999999999999999999999999999999999999999865 3556666789999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
||.+++.+|++..+|+++++.
T Consensus 207 dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 207 DRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred heEEEEecCeEEecCCHHHHh
Confidence 999999999999999999886
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=320.41 Aligned_cols=213 Identities=28% Similarity=0.401 Sum_probs=178.8
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|++..| ++.++|++||+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 5667776554 45689999999999999999999999999999999999887 45899999999975
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 046656 890 QE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE-LKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 890 ~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ..++-++||||....||.+||+|||..++..+.. ++.....++++.+.+- |.+.+++..| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 3456789999999999999999999987654422 1111222677887774 6666777765 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
||||.++|||||+.+|++|+|||||.||-|.-...|.+.|+++.++ |.||+++-+... ...+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999866 779999988765 46778999999995 79999
Q ss_pred EcCCC
Q 046656 1044 VGPLG 1048 (1326)
Q Consensus 1044 ~G~~~ 1048 (1326)
.|+..
T Consensus 218 ~G~~~ 222 (237)
T COG0410 218 SGTAA 222 (237)
T ss_pred ecCHH
Confidence 99863
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=319.94 Aligned_cols=212 Identities=24% Similarity=0.365 Sum_probs=174.3
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc----ceEEEEcc
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ----RTAAYISQ 205 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q 205 (1326)
+...+++.++|++||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++...+. +-++||||
T Consensus 9 l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPe 85 (237)
T COG0410 9 LSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPE 85 (237)
T ss_pred EeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence 344567788999999999999999999999999999999999999987 99999999999876553 56899999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-Ccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-LDVCA 284 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~ 284 (1326)
....|++|||+|||..++...... +. .+ .. .|++.+.+= |..-.
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~~-~~------~~------~~----------------------~e~v~~lFP~Lker~ 130 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRDK-EA------QE------RD----------------------LEEVYELFPRLKERR 130 (237)
T ss_pred cccchhhCcHHHHHhhhhhccccc-cc------cc------cc----------------------HHHHHHHChhHHHHh
Confidence 999999999999999876543210 00 00 00 111222221 22223
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+.. ...|||||||-++|||||+++|++|+|||||.||-|.-..+|++.++++.+. .+.+|+.+.|+...+.+++
T Consensus 131 ~~~-----aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~ia 204 (237)
T COG0410 131 NQR-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIA 204 (237)
T ss_pred cCc-----ccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhh
Confidence 333 3369999999999999999999999999999999999999999999998754 4578888999999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
||.++|.+|+|++.|+.+++.
T Consensus 205 Dr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 205 DRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred CEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999885
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=347.56 Aligned_cols=218 Identities=26% Similarity=0.304 Sum_probs=179.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++... ...+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67889988774210 012459999999999999999999999999999999999876 45899999998763
Q ss_pred c-------ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046656 890 Q-------ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGES 960 (1326)
Q Consensus 890 ~-------~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 960 (1326)
. ...++.+|||+|++. .+...||+||+.|+.... ..+.++..++++++++.++|. +..++.+ .
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1 134567999999862 233479999999865322 234444456789999999996 5666654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+||+++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999765 899999999986 67788999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999975
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=332.35 Aligned_cols=208 Identities=34% Similarity=0.500 Sum_probs=174.6
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 4667766552 246999999999999 999999999999999999999876 468999999987643
Q ss_pred c--cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 891 E--TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 891 ~--~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ..++.++|++|++.+++.+||.||+.+....+ ..+..+..+.++++++.+++.+..++.++ .|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHH
Confidence 2 23567899999999888899999998865443 12233334568899999999887776653 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.+|++++|++ |+++..|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999876 599999999986 46678999999986 6877654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=347.88 Aligned_cols=218 Identities=23% Similarity=0.300 Sum_probs=180.3
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++... .....+|+|||++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 67888888774210 011359999999999999999999999999999999999877 45899999986531
Q ss_pred ---------------------------cccccceEEEeecCC-CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 046656 890 ---------------------------QETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941 (1326)
Q Consensus 890 ---------------------------~~~~~~~~gyv~Q~~-~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l 941 (1326)
....++.+|||+|++ ..+...||+|++.|+.... ..+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 112356799999985 3344579999999865432 344555566789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 046656 942 ELVELK-PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1020 (1326)
Q Consensus 942 ~~l~l~-~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1020 (1326)
+.++|. ++.++.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.+.|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 6677665 3699999999999999999999999999999999999999999999998779999999999
Q ss_pred CcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 1021 PSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1021 ~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
++ ++.+.+||+++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 76 57788999999985 799999985
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=333.28 Aligned_cols=208 Identities=24% Similarity=0.317 Sum_probs=174.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 46778877652 12469999999999999999999999999999999999876 46899999998764
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. .+++.++|++|++.+++..|++||+.+....+ ....++..+.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567899999998888899999998865432 2233444456789999999988777665 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999998777899999999986 56778999999986 564
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=334.34 Aligned_cols=199 Identities=27% Similarity=0.425 Sum_probs=164.8
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS--PLVTV 912 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~~Tv 912 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+. +..||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999876 45899999998653 2456799999997663 34799
Q ss_pred HHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 046656 913 YESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991 (1326)
Q Consensus 913 ~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsg 991 (1326)
+||+.+....... .....+...+.++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 001122334568899999999877776653 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 992 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 992 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999998877999999999986 57788999999975 4 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=348.25 Aligned_cols=218 Identities=24% Similarity=0.335 Sum_probs=180.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999998874210 012359999999999999999999999999999999999887 4589999999775
Q ss_pred Cc-------------------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc
Q 046656 889 KQ-------------------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK 947 (1326)
Q Consensus 889 ~~-------------------~~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~ 947 (1326)
.. ...++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3444 59999998864321 234444456788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHH
Q 046656 948 -PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIF 1026 (1326)
Q Consensus 948 -~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1026 (1326)
+..++.+ ..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 4555543 469999999999999999999999999999999999999999999998777999999999986 567
Q ss_pred HHhceeeEEecCcEEEEEcCC
Q 046656 1027 EAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1027 ~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 799999985
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=322.49 Aligned_cols=207 Identities=27% Similarity=0.362 Sum_probs=180.4
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccc----ccceEEEeecCCCCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET----FTRISGYCEQNDIHSP 908 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~~~~~ 908 (1326)
+...+++|||+++++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++.... .+.-++--+|...+++
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 46789999999999999999999999999999999999988 46899999999875432 2345677899999999
Q ss_pred CCCHHHHHHHHHHhhc--------cC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 046656 909 LVTVYESLLYSAWLRL--------RT-EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVAN 979 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~--------~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~ 979 (1326)
.+||.||+..++..+. +. ....++..+++.++|+.+||.+.+|...| +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999988754331 11 11234456778999999999999999986 5999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 980 PSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 980 p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
|++|+||||.+||.+.....+.+.|+++.++ |.||+++-||.+ -++.+||||++|+. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHH
Confidence 9999999999999999999999999999874 799999999998 58999999999985 7999999874
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=332.02 Aligned_cols=205 Identities=26% Similarity=0.346 Sum_probs=172.8
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4667776653 2469999999999999999999999999999999999876 458999999987632
Q ss_pred -----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 891 -----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 891 -----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
...++.++|++|++.+++.+|++||+.+...... ..+.++..+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2245679999999988888999999987642111 2233344556889999999988777765 369999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877899999999986 577789999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=344.29 Aligned_cols=215 Identities=26% Similarity=0.390 Sum_probs=181.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ +++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 578999988763 12459999999999999999999999999999999999876 4689999999876
Q ss_pred Cc-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 KQ-----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~~-----~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
.. ..+++.+||++|++. .....|++||+.+..... ..+.++..+.++++++.++|.+..++.++ .|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cC
Confidence 31 234567999999864 234579999998864322 23444445678999999999888777653 69
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
|||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 46678999999986 699
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999985
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=337.05 Aligned_cols=214 Identities=27% Similarity=0.379 Sum_probs=180.7
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788877653 2469999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 890 QE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 890 ~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
.. ..++.++|++|++.+++.+|+.||+.+...++. ..+.++.+..++++++.+++.+..+..+ ..||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 31 134579999999988888999999987543221 2233344567889999999987766655 369999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++.++|+|||++||++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 67788999999985 7899988
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=338.78 Aligned_cols=215 Identities=21% Similarity=0.255 Sum_probs=180.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 477888887763 2469999999999999999999999999999999999876 4589999999865
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 046656 889 KQ----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-Q 951 (1326)
Q Consensus 889 ~~----------------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~ 951 (1326)
.. ..+++.++|++|++.+++.+|++||+.+..... . ........+++.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-L-GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 123567899999999998899999998754211 1 123444456788999999997753 5
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhce
Q 046656 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 952 ~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
..+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+
T Consensus 148 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 443 469999999999999999999999999999999999999999999999877999999999986 56678999
Q ss_pred eeEEecCcEEEEEcCC
Q 046656 1032 LFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1032 v~~l~~gg~~~~~G~~ 1047 (1326)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 788998875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=310.38 Aligned_cols=208 Identities=30% Similarity=0.444 Sum_probs=176.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc---ceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ---RTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 212 (1326)
.+.+|++||++++||||++|+||||||||||||+|+|++.|+ +|++.+||.+.+++.+. +.-|..+|+..+-+.
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 356899999999999999999999999999999999999998 99999999999887653 567899999888778
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+|-+.++..-.+.+.. | .+...+++.+|...++.+.+. +.
T Consensus 90 Ftv~eVV~mGr~p~~~g~~-----------------~---------------~e~~~i~~~ala~~d~~~la~-----R~ 132 (259)
T COG4559 90 FTVQEVVQMGRIPHRSGRE-----------------P---------------EEDERIAAQALAATDLSGLAG-----RD 132 (259)
T ss_pred eEHHHHHHhcccccccCCC-----------------c---------------hhhHHHHHHHHHHcChhhhhc-----cc
Confidence 8999999998754432211 0 112234667788888877665 45
Q ss_pred ccCCChhhhHHHHHHHHhhc------CCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 293 VRGISGGQKKRLTTGEMMVG------PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+.|||||||||.+||.|+. ++++||||||||+||.....++++..|++++. +..|+.+.|+..-+..+||+
T Consensus 133 y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDr 210 (259)
T COG4559 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADR 210 (259)
T ss_pred hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhhe
Confidence 66899999999999999974 44589999999999999999999999999874 45666789999999999999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|.+||++..|++++++
T Consensus 211 ivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 211 IVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeeCCeEeecCCHHHhc
Confidence 9999999999999999885
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=337.13 Aligned_cols=214 Identities=24% Similarity=0.321 Sum_probs=177.3
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcCc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISGY 886 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 886 (1326)
++++|+++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 46778876653 245999999999999999999999999999999999987632 12899999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 046656 887 PKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK----PLRQSLVGLP 957 (1326)
Q Consensus 887 ~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~vg~~ 957 (1326)
+... ...++.++|++|+..+++ .|++||+.+....+. ..+..+..+.++++++.+++. +..++.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 142 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA--- 142 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc---
Confidence 7642 123567999999988888 999999988654331 122344456688999999997 5555544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|++
T Consensus 143 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 143 --LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999876 489999999986 57788999999996
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 688998875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=311.14 Aligned_cols=227 Identities=25% Similarity=0.369 Sum_probs=187.5
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
|+.+|++|+. .++.+|++||++++|||++||+|||||||||||++|+|... +.+|++.++|.+.+
T Consensus 2 i~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 4567888876 34679999999999999999999999999999999999877 45899999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
. ....+..+.+||+..+....||+|-+.++..-... .-...+..+.++++|...++.+++.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 4 23456779999999988888999999987532211 1111233445789999999999887765 3699999
Q ss_pred HHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 967 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 967 rqrl~ia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||.+||.|++ ++++||||||||.||...+..++++.|+++++|..|+++-||.+. ...++|||++|.+ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 456999999999999999999999999999999999999999985 6678999999985 79
Q ss_pred EEEEcCCCC-ChhhHHHHHh
Q 046656 1041 EIYVGPLGS-NSSDLISYLQ 1059 (1326)
Q Consensus 1041 ~~~~G~~~~-~~~~~~~~f~ 1059 (1326)
++..|++.+ .+.+.++-.+
T Consensus 219 v~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 219 VIASGSPQDVLTDETLERVY 238 (259)
T ss_pred EeecCCHHHhcCHHHHHHHh
Confidence 999998743 3445555444
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=334.27 Aligned_cols=217 Identities=25% Similarity=0.295 Sum_probs=172.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. .....+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4677887765310 001369999999999999999999999999999999999876 46899999998764
Q ss_pred c------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046656 890 Q------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGES 960 (1326)
Q Consensus 890 ~------~~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 960 (1326)
. ..+++.++|++|++ .+.+.+||+||+.+....... ..........++++++.+++. +..+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 23456799999998 456789999999876433211 111111122235889999995 4556554 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 59999999999999999999999999999999999999999999998765 899999999986 56668999999985 6
Q ss_pred EEEEEc
Q 046656 1040 QEIYVG 1045 (1326)
Q Consensus 1040 ~~~~~G 1045 (1326)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 877654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=332.19 Aligned_cols=193 Identities=27% Similarity=0.382 Sum_probs=163.8
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCC-CCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDI-HSPLV 910 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~~ 910 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. .++..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999876 468999999987642 234567899999974 35678
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
|++||+.+..... .......++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764322 1223333456889999999987777665 3599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 991 GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
|||+.++..+.+.|++++++|+|||++||++. ++...+|++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 566779999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=344.71 Aligned_cols=217 Identities=25% Similarity=0.349 Sum_probs=179.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++... ...+.+|+|||++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 57888888774110 011359999999999999999999999999999999999877 46899999998863
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046656 890 Q-------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGE 959 (1326)
Q Consensus 890 ~-------~~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 959 (1326)
. ..+++.+||++|++ .+++ .||.|++.|+.... ..+..+.++++.++++.++|. ++.++.+
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP----- 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----
Confidence 1 12456799999986 3444 69999999875322 234455566789999999996 4556554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 469999999999999999999999999999999999999999999999877999999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=338.09 Aligned_cols=206 Identities=22% Similarity=0.275 Sum_probs=176.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 588999988763 2459999999999999999999999999999999999876 4589999999765
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 235678999999988888999999987421 0 12345788999999988777665 369999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 4899999999986 56778999999985 788888764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=343.79 Aligned_cols=216 Identities=25% Similarity=0.311 Sum_probs=182.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++.. ..+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37888998877411 12359999999999999999999999999999999999877 4689999999886
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ...++.+||++|++. .++..||+||+.|+.... ..+.++.+++++++++.++|.+..+..++ .|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCH
Confidence 43 234567999999973 567789999999864322 23455555678999999999988777653 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 44 57999999985 79999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 9885
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=331.48 Aligned_cols=203 Identities=28% Similarity=0.425 Sum_probs=168.8
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 212 (1326)
++.+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~ 86 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPH 86 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccC
Confidence 33457999999999999999999999999999999999999987 9999999988754322 3579999999888889
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.++....+.. . .+....++.+++.+||++..+..
T Consensus 87 ~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 127 (213)
T cd03259 87 LTVAENIAFGLKLRGVP----------K------------------------AEIRARVRELLELVGLEGLLNRY----- 127 (213)
T ss_pred CcHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhcC-----
Confidence 99999998864322110 0 00112345678899998766644
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.++||+|++|++
T Consensus 128 ~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~ 206 (213)
T cd03259 128 PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNE 206 (213)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998653 355677789999899999999999999
Q ss_pred CeEEEEc
Q 046656 373 GQIVYQG 379 (1326)
Q Consensus 373 G~iv~~G 379 (1326)
|++++.|
T Consensus 207 G~i~~~g 213 (213)
T cd03259 207 GRIVQVG 213 (213)
T ss_pred CEEEecC
Confidence 9998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=333.55 Aligned_cols=212 Identities=27% Similarity=0.397 Sum_probs=177.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 45677776652 2469999999999999999999999999999999999876 45899999998764
Q ss_pred cc--cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 890 QE--TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 890 ~~--~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ...+.++|++|++.+++..|++||+.+....+ ........+.++++++.+++.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 21 22356899999988888899999998765432 22333345568899999999887776654 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999874 5899999999986 34 45999999985 78888887
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=346.12 Aligned_cols=229 Identities=21% Similarity=0.232 Sum_probs=184.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++............+...+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 57889998777532100000001123579999999999999999999999999999999999886 4589999999886
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046656 889 KQE------TFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGE 959 (1326)
Q Consensus 889 ~~~------~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 959 (1326)
... .+++.++||+|++ .++|.+||.|++.+...... ...+.++.++.+.++++.++|. +..++..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p----- 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYP----- 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCc-----
Confidence 431 2356799999997 57889999999988643321 1234555667789999999995 3555554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..||||||||++|||||+.+|++||+||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999999764 999999999986 56678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 799999985
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=344.28 Aligned_cols=218 Identities=22% Similarity=0.328 Sum_probs=180.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367888888774210 012459999999999999999999999999999999999877 4589999999876
Q ss_pred Cc-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046656 889 KQ-------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPG 958 (1326)
Q Consensus 889 ~~-------~~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~ 958 (1326)
.. ...++.+|||+|++ .+++ .||.||+.|..... ..+..+..++++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 143 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP---- 143 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 32 13456799999986 3444 59999999864322 234455566789999999996 5666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|++
T Consensus 144 -~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 144 -FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred -ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999875 4899999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 799999975
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=332.41 Aligned_cols=209 Identities=30% Similarity=0.378 Sum_probs=174.0
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHI 210 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~ 210 (1326)
+++.+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (220)
T cd03265 9 KYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVD 85 (220)
T ss_pred EECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCcccc
Confidence 334457999999999999999999999999999999999999887 999999998764321 235799999999889
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.+.....+... .+....++++++.+||++..++.
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 128 (220)
T cd03265 86 DELTGWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRL--- 128 (220)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCC---
Confidence 99999999998654322100 00112356789999998766654
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+..|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+.+++.+++|++++|
T Consensus 129 --~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l 205 (220)
T cd03265 129 --VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAII 205 (220)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4579999999999999999999999999999999999999999999998653 2556777899999999999999999
Q ss_pred cCCeEEEEcChhhH
Q 046656 371 SDGQIVYQGPCELV 384 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~ 384 (1326)
++|+++..|+++++
T Consensus 206 ~~G~i~~~~~~~~~ 219 (220)
T cd03265 206 DHGRIIAEGTPEEL 219 (220)
T ss_pred eCCEEEEeCChHHc
Confidence 99999999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=330.98 Aligned_cols=211 Identities=25% Similarity=0.334 Sum_probs=172.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4677887766311 012469999999999999999999999999999999999876 46899999998764
Q ss_pred cc---c---cc-ceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 890 QE---T---FT-RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 890 ~~---~---~~-~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
.. . ++ +.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+++.+..++.++ .|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----EL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hC
Confidence 21 1 12 56899999998888899999998865432 12233334567899999999887776653 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998754 899999999986 34 55799999986 565
Q ss_pred E
Q 046656 1042 I 1042 (1326)
Q Consensus 1042 ~ 1042 (1326)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 3
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=343.73 Aligned_cols=219 Identities=25% Similarity=0.303 Sum_probs=179.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 367788887763110 001459999999999999999999999999999999999877 4689999999876
Q ss_pred Cc-------ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046656 889 KQ-------ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGE 959 (1326)
Q Consensus 889 ~~-------~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 959 (1326)
.. ...++.+||++|++. .+..+||.||+.|..... ....++..++++++++.++|. +..++.++
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF---- 144 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc----
Confidence 32 123457899999863 233579999998764322 233445556789999999997 56677654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.||++++|++ |
T Consensus 145 -~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 145 -ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999777999999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 99999875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=330.49 Aligned_cols=197 Identities=25% Similarity=0.350 Sum_probs=171.1
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 469999999999999999999999999999999999876 46899999998764322 256899999998888899999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
|+.+....+. .+ +..+.++++.+++.+..+..++ .||||||||++|||+|+.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654321 11 2347889999999887777653 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 995 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 995 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
.++..+++.|+++.++|+|||++||++. ++.+.+|++++|++ |++++.|+..
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999777999999999986 57788999999985 7999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=351.52 Aligned_cols=207 Identities=25% Similarity=0.356 Sum_probs=176.3
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 209 (1326)
.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 357999999999999999999999999999999999999987 9999999998765322 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.++....+... .+....++.+++.+||++..++
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~--- 136 (343)
T PRK11153 94 LSSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADR--- 136 (343)
T ss_pred CCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhC---
Confidence 999999999998754432100 0011235677899999876664
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.++.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++
T Consensus 137 --~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 137 --YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAV 213 (343)
T ss_pred --ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 45579999999999999999999999999999999999999999999998653 356677789999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 214 IDAGRLVEQGTVSEVF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998774
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=347.01 Aligned_cols=209 Identities=27% Similarity=0.371 Sum_probs=175.5
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHIG 211 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~ 211 (1326)
++.+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (303)
T TIGR01288 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDP 90 (303)
T ss_pred eCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCc
Confidence 34456999999999999999999999999999999999999987 999999998864321 2467999999998889
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
.+||+||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 91 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~--- 133 (303)
T TIGR01288 91 EFTVRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRV--- 133 (303)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCch---
Confidence 9999999987543321100 001122456788999988777554
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++. .+++|+.++|+.+++.++||+|++|+
T Consensus 134 --~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~~~d~i~~l~ 209 (303)
T TIGR01288 134 --ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLE 209 (303)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 35667778999999999999999999
Q ss_pred CCeEEEEcChhhHHH
Q 046656 372 DGQIVYQGPCELVLD 386 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~~ 386 (1326)
+|++++.|+++++..
T Consensus 210 ~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 210 SGRKIAEGRPHALID 224 (303)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=341.10 Aligned_cols=213 Identities=23% Similarity=0.320 Sum_probs=178.7
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ +++.+|+||||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 45777776652 12359999999999999999999999999999999999876 46899999998764
Q ss_pred c----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 890 Q----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 890 ~----~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
. ...++.+||++|++. .+...|+.||+.|..... ..+....++.++++++.++|.+..++.++ .||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCH
Confidence 2 223567999999975 356689999998865322 23444445678899999999888777653 6999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999998877999999999986 45 66999999986 789999
Q ss_pred cCC
Q 046656 1045 GPL 1047 (1326)
Q Consensus 1045 G~~ 1047 (1326)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 985
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=347.40 Aligned_cols=214 Identities=25% Similarity=0.431 Sum_probs=180.9
Q ss_pred CceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc
Q 046656 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886 (1326)
Q Consensus 807 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 886 (1326)
+..+..+|+++.++ +++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCc
Confidence 45666779998875 23479999999999999999999999999999999999987 46899999998
Q ss_pred cCC---cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc------cccCC
Q 046656 887 PKK---QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS------LVGLP 957 (1326)
Q Consensus 887 ~~~---~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~------~vg~~ 957 (1326)
+.. ...++++++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..+|.+..+. .+|.
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige- 452 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE- 452 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc-
Confidence 764 4568899999999998876 49999998752 1222 3447888888888776544 3443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
++++|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++|+|++||++. ....+|+|++|++
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld~ 529 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLDN 529 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEecC
Confidence 4568999999999999999999999999999999999999999999999986 599999999974 5677899999985
Q ss_pred CcEEEEEcCCCC
Q 046656 1038 GGQEIYVGPLGS 1049 (1326)
Q Consensus 1038 gg~~~~~G~~~~ 1049 (1326)
|+++..|...+
T Consensus 530 -G~l~~~g~~~~ 540 (559)
T COG4988 530 -GRLVEQGTHEE 540 (559)
T ss_pred -CceeccCCHHH
Confidence 79999998643
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=334.75 Aligned_cols=212 Identities=23% Similarity=0.340 Sum_probs=177.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 477888887663 2469999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 046656 889 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV-ELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 889 ~~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~vg~~~~~~LS 963 (1326)
... ..++.++|++|+..+++..||.||+.+..... ......+.++++++.+ ++.+..+..+ ..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 432 13457999999998888899999998754211 1122234567778887 4766555543 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998877999999999986 67889999999986 79999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9985
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=362.27 Aligned_cols=211 Identities=24% Similarity=0.447 Sum_probs=174.1
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHI 210 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 210 (1326)
+++.+||+|+|++|+|||.+||+|||||||||+.+.|..+++|+ +|+|.+||+|+.+.++ ++.+|+|.|+|.+|
T Consensus 478 Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 478 RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLF 554 (716)
T ss_pred CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceee
Confidence 34567999999999999999999999999999999999999998 9999999999988776 47899999999987
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
. -||+|||.|+... . . .+..+.++... . ..|. +.++++..||.||+
T Consensus 555 s-~sI~eNI~YG~~~--~-t----------------------~e~i~~AAk~A-N----ah~F---I~~~p~gY~T~VGE 600 (716)
T KOG0058|consen 555 S-GSIRENIAYGLDN--A-T----------------------DEEIEAAAKMA-N----AHEF---ITNFPDGYNTVVGE 600 (716)
T ss_pred c-ccHHHHHhcCCCC--C-C----------------------HHHHHHHHHHh-C----hHHH---HHhCccccccccCC
Confidence 5 5999999998641 1 0 01111111110 0 0122 33589999999996
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+. ..||||||||++|||||+.+|+||||||.||+||+.+...+-+.|.+..+ +.|+++|.|.. .+.+.+|+|+++
T Consensus 601 kG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRL-STV~~Ad~Ivvi 675 (716)
T KOG0058|consen 601 KG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRL-STVRHADQIVVI 675 (716)
T ss_pred cc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhh-hHhhhccEEEEE
Confidence 54 47999999999999999999999999999999999999999999988643 35555577766 577889999999
Q ss_pred cCCeEEEEcChhhHHH
Q 046656 371 SDGQIVYQGPCELVLD 386 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~~ 386 (1326)
++|++++.|+++|+++
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999999864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=339.33 Aligned_cols=214 Identities=24% Similarity=0.323 Sum_probs=178.8
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEE
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAA 201 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~ 201 (1326)
++.++++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.+... ++.++
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEE
Confidence 4455667788999999999999999999999999999999999999987 9999999988754321 24699
Q ss_pred EEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc
Q 046656 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD 281 (1326)
Q Consensus 202 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 281 (1326)
|++|++.+++.+||+||+.++....+... .+....++++++.+||+
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~ 151 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLE 151 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCH
Confidence 99999988989999999998654321100 00112346678999998
Q ss_pred ccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHH
Q 046656 282 VCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETY 361 (1326)
Q Consensus 282 ~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 361 (1326)
+..++. ++.|||||||||+||+||+.+|+++||||||+|||+.++..+.+.++++++. .+.+|+.++|+.+++.
T Consensus 152 ~~~~~~-----~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~ 225 (269)
T cd03294 152 GWEHKY-----PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEAL 225 (269)
T ss_pred hHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 766654 4579999999999999999999999999999999999999999999998653 3556777889998999
Q ss_pred hhCCeEEEecCCeEEEEcChhhHH
Q 046656 362 DLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 362 ~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
+++|++++|++|++++.|+++++.
T Consensus 226 ~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 226 RLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=337.56 Aligned_cols=217 Identities=23% Similarity=0.266 Sum_probs=179.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 477888887652 3469999999999999999999999999999999999876 4689999999876
Q ss_pred Ccc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-------C-----CCCHHHHHHHHHHHHHHcCCcccccc
Q 046656 889 KQE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-------T-----EVDSETRKMFIEEIMELVELKPLRQS 952 (1326)
Q Consensus 889 ~~~---~-~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-------~-----~~~~~~~~~~v~~~l~~l~l~~~~~~ 952 (1326)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+++.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 432 1 233489999999999999999999985431100 0 00111233567889999999877777
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhce
Q 046656 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 953 ~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
.++ .||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+
T Consensus 150 ~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 654 59999999999999999999999999999999999999999999998765 899999999986 67788999
Q ss_pred eeEEecCcEEEEEcCC
Q 046656 1032 LFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1032 v~~l~~gg~~~~~G~~ 1047 (1326)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999985 789999885
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=351.77 Aligned_cols=203 Identities=24% Similarity=0.296 Sum_probs=175.6
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---c----ccceEEEeecCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---T----FTRISGYCEQNDI 905 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~ 905 (1326)
+...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||++|+..
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 33568999999999999999999999999999999999887 4589999999886431 1 1357999999999
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 046656 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985 (1326)
Q Consensus 906 ~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illL 985 (1326)
+++.+||+||+.|....+ ..+.++..++++++++.++|.+..++.+. .||||||||++|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPD-----ELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876443 22344455678899999999988877753 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 986 DEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 986 DEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999875 4899999999986 67788999999985 799998875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=334.29 Aligned_cols=213 Identities=24% Similarity=0.330 Sum_probs=179.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67788877663 2469999999999999999999999999999999999876 46899999998752
Q ss_pred ------c---ccccceEEEeecCCCCCCCCCHHHHHHHHH-HhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046656 890 ------Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959 (1326)
Q Consensus 890 ------~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 959 (1326)
. ...++.++|++|++.+++.+|+.||+.+.. ... .....+..+.+.++++.+++.+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 0 123457899999999999999999997532 211 1223334456889999999988777765
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 369999999999999999999999999999999999999999999998777999999999986 56678999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 99998875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=325.58 Aligned_cols=224 Identities=25% Similarity=0.355 Sum_probs=195.4
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQH 206 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 206 (1326)
.+...-++|+|+.++.||+..|||-||||||||+++|.++.+|+ .|+|.++|.++..... ++.++.|+|+
T Consensus 38 tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~ 114 (386)
T COG4175 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114 (386)
T ss_pred hCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhh
Confidence 34456799999999999999999999999999999999999998 9999999999866543 3679999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
..++|+.||.||+.|+.+.+|+... +.+.+..+.|+.+||+..++
T Consensus 115 FaLlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~- 159 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYAD- 159 (386)
T ss_pred hccccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhh-
Confidence 9999999999999999999886421 12334577899999998887
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.++..||||+||||.+||||+.+|+||+||||+|+|||--+.++.+.|.++-...+ .||+.++|+.+|++++.||
T Consensus 160 ----~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~-KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 160 ----KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDR 234 (386)
T ss_pred ----cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHHhccce
Confidence 46678999999999999999999999999999999999999999999988866554 5566799999999999999
Q ss_pred EEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHh
Q 046656 367 IILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEV 408 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~ 408 (1326)
|.+|.+|+|+..|+++|++ ..|...-+++|.+++
T Consensus 235 IaimkdG~ivQ~Gtp~eIl--------~~PAndYV~~Fv~~v 268 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEIL--------LNPANDYVRDFVRNV 268 (386)
T ss_pred EEEecCCeEEEeCCHHHHH--------cCccHHHHHHHHhcC
Confidence 9999999999999999996 356666667776654
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=335.71 Aligned_cols=213 Identities=23% Similarity=0.307 Sum_probs=179.3
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5677777653 2469999999999999999999999999999999999876 458999999987532
Q ss_pred ----------------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 046656 891 ----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV 954 (1326)
Q Consensus 891 ----------------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v 954 (1326)
...++.++|++|++.+++..|+.||+.+..... .........+.++++++.+++.+..+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 144 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP 144 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh
Confidence 123567999999998898999999998753211 12233444566889999999988777654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceee
Q 046656 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 955 g~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++. ++...+|+++
T Consensus 145 -----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T TIGR03005 145 -----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVC 218 (252)
T ss_pred -----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 469999999999999999999999999999999999999999999998764 899999999986 5777899999
Q ss_pred EEecCcEEEEEcCC
Q 046656 1034 LMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1034 ~l~~gg~~~~~G~~ 1047 (1326)
+|++ |++++.|+.
T Consensus 219 ~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 219 FFDK-GRIVEQGKP 231 (252)
T ss_pred EEEC-CEEEEeCCH
Confidence 9986 789988874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=341.59 Aligned_cols=218 Identities=26% Similarity=0.390 Sum_probs=178.1
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-----ccceEEEEccCCC-CC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-----PQRTAAYISQHDV-HI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 210 (1326)
+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999876432 2467999999853 44
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc--ccccccc
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD--VCADTLV 288 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 288 (1326)
...||+||+.|+....+.. + .+....++++++.+||+ +..|
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~--- 139 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------E------------------------EEIENRVKRAMNIVGLDYEDYKD--- 139 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------H------------------------HHHHHHHHHHHHHcCCCchhhcc---
Confidence 5689999999865432210 0 11122456789999996 4444
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
..++.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+++|++++|+..++.++||+|+
T Consensus 140 --~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 140 --KSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred --CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 456689999999999999999999999999999999999999999999998653 35677778999999999999999
Q ss_pred EecCCeEEEEcChhhHHH---HHHhcCCCCCC
Q 046656 369 LLSDGQIVYQGPCELVLD---FFESMGFKCPE 397 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~~---~F~~lG~~~p~ 397 (1326)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988753 23345655544
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=333.37 Aligned_cols=218 Identities=23% Similarity=0.255 Sum_probs=175.6
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5677776653 346999999999999999999999999999999999984211468999999987643
Q ss_pred c---cc-cceEEEeecCCCCCCCCCHHHHHHHHHHhhccC----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCC
Q 046656 891 E---TF-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT----EVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESG 961 (1326)
Q Consensus 891 ~---~~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~----~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~ 961 (1326)
. .. +..++|++|++.+++.+|++|++.+........ ..+..+..+.++++++.++|. ++.+..++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 11 234899999999999999999998764322110 112233345688999999997 45555442 24
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHH-hceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gg~ 1040 (1326)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ .+... +|++++|++ |+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877899999999986 46666 799999985 78
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 223 i~~~g~~ 229 (243)
T TIGR01978 223 IVKSGDV 229 (243)
T ss_pred EEEecCH
Confidence 8998874
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=339.83 Aligned_cols=214 Identities=26% Similarity=0.372 Sum_probs=180.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ +.+.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67788887763 12359999999999999999999999999999999999876 46899999998764
Q ss_pred c---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 890 Q---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
. ...++.+||++|++. .+...||.||+.+..... ..+.+...+.++++++.++|.+..++.++ .||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHH
Confidence 3 234567899999964 334579999998765322 23444445678999999999887777653 69999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999998765 899999999986 57789999999986 689999
Q ss_pred cCC
Q 046656 1045 GPL 1047 (1326)
Q Consensus 1045 G~~ 1047 (1326)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 975
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=364.68 Aligned_cols=215 Identities=30% Similarity=0.416 Sum_probs=179.4
Q ss_pred CceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc
Q 046656 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886 (1326)
Q Consensus 807 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 886 (1326)
...++|+||+++|+..+ +..+|+|+|+.|++|+.+||+|+|||||||++++|.+... |.+|+|+|||.
T Consensus 348 ~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG~ 415 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDGE 415 (1228)
T ss_pred ccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcCc
Confidence 44799999999997543 3569999999999999999999999999999999999887 56999999999
Q ss_pred cCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcC-------CcccccccccC
Q 046656 887 PKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE-------LKPLRQSLVGL 956 (1326)
Q Consensus 887 ~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~vg~ 956 (1326)
++.. ..++..+|.|.|+|.++ ..|++||+.|+- .+.+. +.++++.++.+ |.+-.|+.+|.
T Consensus 416 di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~----~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 416 DIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATR----EEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred cchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccH----HHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 8754 45678899999999766 479999999852 22222 22445554443 33446777887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
.|. .||||||||++|||||+++|+|||||||||+||+++.+.|+++|++.. .|+|.|+++|++| ..+.+|++++|+
T Consensus 486 ~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS--tIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 486 RGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS--TIRNADKIAVME 561 (1228)
T ss_pred CCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh--hhhccCEEEEEE
Confidence 665 499999999999999999999999999999999999999999998865 5999999999987 345699999999
Q ss_pred cCcEEEEEcCCC
Q 046656 1037 RGGQEIYVGPLG 1048 (1326)
Q Consensus 1037 ~gg~~~~~G~~~ 1048 (1326)
+ |+++..|..+
T Consensus 562 ~-G~IvE~G~h~ 572 (1228)
T KOG0055|consen 562 E-GKIVEQGTHD 572 (1228)
T ss_pred C-CEEEEecCHH
Confidence 6 7999999863
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=335.43 Aligned_cols=214 Identities=24% Similarity=0.298 Sum_probs=176.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 578899887653 246999999999999999999999999999999999987531 3589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK----PLRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~vg~ 956 (1326)
.++.. ..+++.+||++|+..+++ .|++||+.|....+ ..+.+..++.++++++.+++. +..++.+
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 152 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA-- 152 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh--
Confidence 87532 124567999999988777 89999999865332 223333445688899999884 2334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+.+|++++|+
T Consensus 153 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 153 ---LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 899999999986 5678899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 799999875
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=334.11 Aligned_cols=211 Identities=27% Similarity=0.380 Sum_probs=173.4
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 213 (1326)
+.+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 13 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~ 89 (239)
T cd03296 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHM 89 (239)
T ss_pred CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCC
Confidence 3456999999999999999999999999999999999999887 9999999988754332 35799999998888899
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.++....+...+.+ . .+....++.+++.+||++..+. .+
T Consensus 90 tv~e~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~ 134 (239)
T cd03296 90 TVFDNVAFGLRVKPRSERPP------E------------------------AEIRAKVHELLKLVQLDWLADR-----YP 134 (239)
T ss_pred CHHHHHhhhhhhccccccCC------H------------------------HHHHHHHHHHHHHcCChhhhhc-----Ch
Confidence 99999998654321100000 0 0011234667889999766554 34
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.+++|+|++|++|
T Consensus 135 ~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G 213 (239)
T cd03296 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALEVADRVVVMNKG 213 (239)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999998653 2456666888888899999999999999
Q ss_pred eEEEEcChhhH
Q 046656 374 QIVYQGPCELV 384 (1326)
Q Consensus 374 ~iv~~G~~~~~ 384 (1326)
++++.|+++++
T Consensus 214 ~i~~~~~~~~~ 224 (239)
T cd03296 214 RIEQVGTPDEV 224 (239)
T ss_pred eEEEecCHHHH
Confidence 99999998776
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=336.52 Aligned_cols=213 Identities=25% Similarity=0.352 Sum_probs=178.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56788877653 2469999999999999999999999999999999999876 46899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
. ...++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+++.+..++.++ .|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHH
Confidence 2 223457899999988878899999998754221 11222334568899999999887777654 599999
Q ss_pred HHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 967 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 967 rqrl~ia~aL~------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|+++. ++|+|||++||++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 66899999999986 57778999999985 6
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 88888875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=333.56 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=174.9
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
++++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 86 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRL 86 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEeccccc
Confidence 33456999999999999999999999999999999999999887 9999999988765432 2459999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.++....+... . .+. . ..+ ...+....++++++.+||++..++
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~-~------~~~---~-~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~--- 139 (236)
T cd03219 87 FPELTVLENVMVAAQARTGSG-L------LLA---R-ARR-------------EEREARERAEELLERVGLADLADR--- 139 (236)
T ss_pred ccCCCHHHHHHHHHhhccccc-c------ccc---c-ccc-------------cHHHHHHHHHHHHHHcCccchhhC---
Confidence 999999999998654321100 0 000 0 000 000112345678899999876554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. . +.+|+.++|+..++.++||+|++
T Consensus 140 --~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~ 215 (236)
T cd03219 140 --PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTV 215 (236)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEE
Confidence 4557999999999999999999999999999999999999999999999865 3 45667788999999999999999
Q ss_pred ecCCeEEEEcChhhH
Q 046656 370 LSDGQIVYQGPCELV 384 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~ 384 (1326)
|++|++++.|+++++
T Consensus 216 l~~G~i~~~~~~~~~ 230 (236)
T cd03219 216 LDQGRVIAEGTPDEV 230 (236)
T ss_pred EeCCEEEeecCHHHh
Confidence 999999999998876
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=301.73 Aligned_cols=200 Identities=27% Similarity=0.398 Sum_probs=177.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
..+|+|+|++|.+||.++++||||||||||||+++|..+ +..|+|.+||.++....- ..|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 359999999999999999999999999999999999987 568999999998865432 2489999999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
|+.|+..++ .+++.++.+.+.+.+..+||.+..++.+- .||||||||+.|||||..+|++|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998877 56788999999999999999998887763 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEecC-cEEEEEcCC
Q 046656 995 RAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPL 1047 (1326)
Q Consensus 995 ~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g-g~~~~~G~~ 1047 (1326)
-+++.++++|-++. .+|+.++++||+.. +..-+++++++|+.| |+++..-++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999986 45999999999976 444467999999853 677776665
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=332.95 Aligned_cols=215 Identities=26% Similarity=0.317 Sum_probs=178.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56778876652 2469999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046656 890 QE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-----TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960 (1326)
Q Consensus 890 ~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 960 (1326)
.. ..++.++|++|++.+++.+||+||+.+....... .....+..++.++++++.+++.+..+..++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG----- 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----
Confidence 31 1234699999999999999999999885431100 001122334568999999999887776654
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 5999999999999999999999999999999999999999999999875 799999999986 57778999999986 78
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=332.37 Aligned_cols=209 Identities=21% Similarity=0.354 Sum_probs=174.1
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHD 207 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d 207 (1326)
.+++.+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 8 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (232)
T cd03218 8 KRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEA 84 (232)
T ss_pred EEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCc
Confidence 3344557999999999999999999999999999999999999987 9999999988754322 24699999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+++.+||+||+.+.....+.. . .+....++.+++.+||++..++
T Consensus 85 ~~~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~- 129 (232)
T cd03218 85 SIFRKLTVEENILAVLEIRGLS----------K------------------------KEREEKLEELLEEFHITHLRKS- 129 (232)
T ss_pred cccccCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhC-
Confidence 8999999999998864322110 0 0011235677889999876654
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.++.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. .+++++.++|+.+++.+++|+|
T Consensus 130 ----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i 203 (232)
T cd03218 130 ----KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETLSITDRA 203 (232)
T ss_pred ----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4457999999999999999999999999999999999999999999998864 3556777889988999999999
Q ss_pred EEecCCeEEEEcChhhH
Q 046656 368 ILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~ 384 (1326)
++|++|++++.|+.+++
T Consensus 204 ~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 204 YIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEEECCeEEEEeCHHHh
Confidence 99999999999998765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=333.74 Aligned_cols=217 Identities=24% Similarity=0.280 Sum_probs=178.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888877653 246999999999999999999999999999999999987531 3689999999
Q ss_pred ccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCC
Q 046656 886 YPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGLPG 958 (1326)
Q Consensus 886 ~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~~~ 958 (1326)
.++.. ..+++.+||++|++.+++.+||.||+.+....+.. .....+..+.++++++.++|.+ ..++.+
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---- 144 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA---- 144 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc----
Confidence 87642 23456799999999888899999999886533211 1122334456889999999864 234433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++
T Consensus 145 -~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 145 -GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 46999999999999999999999999999999999999999999999864 899999999986 57788999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 788998875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.61 Aligned_cols=217 Identities=24% Similarity=0.265 Sum_probs=178.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 467888887763 246999999999999999999999999999999999987642 3589999999
Q ss_pred ccCC--c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKK--Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~--~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++. . ..+++.++|++|++.+++.+|+.||+.+....+.. ..+.+...+.++++++.+++.+ ..+..+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 147 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDYP-- 147 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccCh--
Confidence 8764 1 23456799999999999899999999886543211 1123334456788999999853 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.+|++++|+
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 148 ---SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 5 799998875
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=344.53 Aligned_cols=210 Identities=24% Similarity=0.339 Sum_probs=178.5
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVH 209 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 209 (1326)
++++++.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.+||++|++.+
T Consensus 10 ~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l 86 (301)
T TIGR03522 10 KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPL 86 (301)
T ss_pred EEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCC
Confidence 3344567999999999999999999999999999999999999988 999999998875422 23579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.|.++..+... .+....++.+++.+||++..+..+
T Consensus 87 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 131 (301)
T TIGR03522 87 YLDMYVREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKI- 131 (301)
T ss_pred CCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCch-
Confidence 999999999998765433110 001123567899999998777554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.|||||||||+||+||+++|++++|||||+|||+.++..+++.++++.. +++|+.++|..+++.++||+|++
T Consensus 132 ----~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sH~l~~~~~~~d~i~~ 204 (301)
T TIGR03522 132 ----GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK---DKTIILSTHIMQEVEAICDRVII 204 (301)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999998742 36677789999999999999999
Q ss_pred ecCCeEEEEcChhhHHH
Q 046656 370 LSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~~ 386 (1326)
|++|++++.|+.+++..
T Consensus 205 l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 205 INKGKIVADKKLDELSA 221 (301)
T ss_pred EECCEEEEeCCHHHHHH
Confidence 99999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=339.83 Aligned_cols=215 Identities=26% Similarity=0.314 Sum_probs=181.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++. ..+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3778888877631 12459999999999999999999999999999999999877 4589999999876
Q ss_pred Ccc---cccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQE---TFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
... ..++.+||++|++. .++..||.||+.+..... ..+.++.++.++++++.++|.+..++.++ .|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCH
Confidence 432 23567999999973 566789999998865332 23344445678999999999988877764 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||+|+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++ +.+|++++|++ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999986 34 45999999985 78999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9985
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=334.18 Aligned_cols=215 Identities=22% Similarity=0.246 Sum_probs=176.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 578999987763 235999999999999999999999999999999999987632 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK----PLRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++ .||+||+.+...... .......++.++++++.+++. +..++.+
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 148 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-- 148 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--
Confidence 87531 134567999999987774 899999988653321 112233345688889998873 3334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.+|++++|+
T Consensus 149 ---~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 149 ---LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999986 4799999999986 5678899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 799998874
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=338.58 Aligned_cols=213 Identities=24% Similarity=0.355 Sum_probs=177.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 45778877653 2459999999999999999999999999999999999876 46899999998763
Q ss_pred c-----ccccceEEEeecCCCC-CCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 Q-----ETFTRISGYCEQNDIH-SPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~-----~~~~~~~gyv~Q~~~~-~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
. ...++.+||++|++.. ....|+.||+.+..... .....+..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234679999998753 34568999998764322 2233444456889999999988777665 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998877999999999986 56778999999986 78999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=332.43 Aligned_cols=207 Identities=24% Similarity=0.335 Sum_probs=170.5
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc-----CCCCceeeEEEECCccCCCCC-----ccceEEEE
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL-----DSSLKVSGRVTYNGHDMNEFV-----PQRTAAYI 203 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv 203 (1326)
++.+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|.++.... .++.++|+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 86 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMV 86 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEE
Confidence 34457999999999999999999999999999999999999 776 999999998875432 23579999
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc
Q 046656 204 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283 (1326)
Q Consensus 204 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 283 (1326)
+|++.++ .+||+||+.++.+..+... . .+....++++++.+||++.
T Consensus 87 ~q~~~~~-~~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~ 132 (227)
T cd03260 87 FQKPNPF-PGSIYDNVAYGLRLHGIKL---------K------------------------EELDERVEEALRKAALWDE 132 (227)
T ss_pred ecCchhc-cccHHHHHHhHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCChH
Confidence 9998877 8999999998654321100 0 0011234667889999866
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
.+..+. +..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.++
T Consensus 133 ~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~ 206 (227)
T cd03260 133 VKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARV 206 (227)
T ss_pred HhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHh
Confidence 554320 467999999999999999999999999999999999999999999999854 3 6677788999999999
Q ss_pred CCeEEEecCCeEEEEcChhh
Q 046656 364 FDDIILLSDGQIVYQGPCEL 383 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~~~ 383 (1326)
||+|++|++|++++.|++++
T Consensus 207 ~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 207 ADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCEEEEEeCCEEEEecCccc
Confidence 99999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=327.39 Aligned_cols=202 Identities=29% Similarity=0.435 Sum_probs=169.1
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 213 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (213)
T cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHM 87 (213)
T ss_pred CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCC
Confidence 3456999999999999999999999999999999999999887 9999999988754322 35799999998888899
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.++.+..+... .+....++.+++.+||++..+.. +
T Consensus 88 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 128 (213)
T cd03301 88 TVYDNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRK-----P 128 (213)
T ss_pred CHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCC-----h
Confidence 99999988654321100 00112356678999998766644 4
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++... +.+|++++|+.+++.+++|+|++|++|
T Consensus 129 ~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g 207 (213)
T cd03301 129 KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDG 207 (213)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 5799999999999999999999999999999999999999999999986533 456666889888999999999999999
Q ss_pred eEEEEc
Q 046656 374 QIVYQG 379 (1326)
Q Consensus 374 ~iv~~G 379 (1326)
++++.|
T Consensus 208 ~~~~~g 213 (213)
T cd03301 208 QIQQIG 213 (213)
T ss_pred EEEecC
Confidence 999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=331.70 Aligned_cols=204 Identities=28% Similarity=0.371 Sum_probs=172.3
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHDVHIG 211 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 211 (1326)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 7999999999999999999999999999999999999987 9999999998754321 357999999999899
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
.+|++||+.+.....+... ......++.+++.+||++..+.
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~----- 136 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADA----- 136 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhc-----
Confidence 9999999988654321100 0011234667899999876654
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+||++++.+|++++|||||+|||+.++..+.+.+++++.. ++++|+.++|+.+++.+++|++++|+
T Consensus 137 ~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 137 YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 45579999999999999999999999999999999999999999999987653 35567778888889999999999999
Q ss_pred CCeEEEEcChhhH
Q 046656 372 DGQIVYQGPCELV 384 (1326)
Q Consensus 372 ~G~iv~~G~~~~~ 384 (1326)
+|++++.|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999998766
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=335.86 Aligned_cols=217 Identities=25% Similarity=0.331 Sum_probs=179.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 56778877653 3569999999999999999999999999999999999876 46899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL-RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
. ...++.++|++|+..+++.+|+.|++.++..... ..........+.++++++.+++.+..++.++ .||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-----DLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHH
Confidence 2 2334568999999888888999999987521100 0011112334568899999999887777653 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++. ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777999999999986 67889999999986 6888988
Q ss_pred CCC
Q 046656 1046 PLG 1048 (1326)
Q Consensus 1046 ~~~ 1048 (1326)
+.+
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 753
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=374.66 Aligned_cols=207 Identities=30% Similarity=0.443 Sum_probs=170.9
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 214 (1326)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|+++|. +|+|.+||.++++.++ |+.++||+|++.+| +-|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCc
Confidence 5899999999999999999999999999999999999998 9999999999987765 58899999987755 679
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+||+.++... ...+..++++...+. .| .+..++...||.||+ +..
T Consensus 563 I~eNi~l~~p~-------------------------~~~e~i~~A~~~ag~-----~~---fI~~lP~gy~t~v~E-~G~ 608 (709)
T COG2274 563 IRENIALGNPE-------------------------ATDEEIIEAAQLAGA-----HE---FIENLPMGYDTPVGE-GGA 608 (709)
T ss_pred HHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc-----HH---HHHhccccccccccc-CCC
Confidence 99999986421 111122222222111 11 233478899999995 667
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
+||||||||++|||||+.+|+||+||||||+||+.+...|.+.|.++.+ ++|+|+ ++|.. .+.+.||+|+||++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~-IaHRl-~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVII-IAHRL-STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEE-EEccc-hHhhhccEEEEccCCc
Confidence 8999999999999999999999999999999999999999999999743 455555 55543 5788999999999999
Q ss_pred EEEEcChhhHHH
Q 046656 375 IVYQGPCELVLD 386 (1326)
Q Consensus 375 iv~~G~~~~~~~ 386 (1326)
|+.+|+.+++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999975
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=326.32 Aligned_cols=194 Identities=26% Similarity=0.337 Sum_probs=164.4
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHH
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVYESLLY 918 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f 918 (1326)
|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+..+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 4589999999876431 234679999999998888999999987
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~ 998 (1326)
....+. .. .+..++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 542111 11 1233456889999999988777765 369999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 999 IVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 999 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
.+++.|++++++ |+|||++||++. ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999998754 899999999986 57778999999986 6777643
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=327.59 Aligned_cols=201 Identities=27% Similarity=0.398 Sum_probs=168.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 57999999999999999999999999999999999999887 9999999988753 246799999998888889999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
||+.++....+... .+....++.+++.+||++..+.. +..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAY-----PHQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC-----cccC
Confidence 99998654322100 00112356678999998766543 4579
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec--CCe
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DGQ 374 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 374 (1326)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+..++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999987543 34566668888888999999999999 799
Q ss_pred EEEEcChh
Q 046656 375 IVYQGPCE 382 (1326)
Q Consensus 375 iv~~G~~~ 382 (1326)
++..++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99888753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=330.41 Aligned_cols=211 Identities=26% Similarity=0.320 Sum_probs=174.0
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 4677776552 2469999999999999999999999999999999999876 468999999987643
Q ss_pred c----cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHH
Q 046656 891 E----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE-LKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 891 ~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~vg~~~~~~LSgG 965 (1326)
. ..++.++|++|+..+++.+|+.||+.+....+. .. ..+.++++++.++ +.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 1 124568999999998898999999987643321 11 1233577788776 555556654 369999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.+|++++|++ |+++..
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998764 899999999986 56678999999985 799999
Q ss_pred cCCCC
Q 046656 1045 GPLGS 1049 (1326)
Q Consensus 1045 G~~~~ 1049 (1326)
|+.++
T Consensus 214 ~~~~~ 218 (230)
T TIGR03410 214 GAGDE 218 (230)
T ss_pred CCHHH
Confidence 98643
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=336.02 Aligned_cols=220 Identities=25% Similarity=0.339 Sum_probs=181.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-eeEEEEEEcCcc
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGNITISGYP 887 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 887 (1326)
-++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 467888887653 346999999999999999999999999999999999987643 236999999987
Q ss_pred CCc--------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 046656 888 KKQ--------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-----TEVDSETRKMFIEEIMELVELKPLRQSLV 954 (1326)
Q Consensus 888 ~~~--------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~v 954 (1326)
+.. ...++.++|++|++.+++.+|++||+.+......+ ......+.+++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999888989999999875321000 01112333457899999999987777765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceee
Q 046656 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 955 g~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
+ .||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+.+.+|+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999999754 899999999986 5778899999
Q ss_pred EEecCcEEEEEcCCC
Q 046656 1034 LMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 1034 ~l~~gg~~~~~G~~~ 1048 (1326)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 6889999864
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=336.43 Aligned_cols=217 Identities=27% Similarity=0.374 Sum_probs=180.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478889887663 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ..+++.++|++|+..+++.+|+.||+.+....... .........+.++++++.+++.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 32 23456799999998888889999999875321100 011112234568899999999877777654 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 57788999999985 78899
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=334.54 Aligned_cols=223 Identities=25% Similarity=0.313 Sum_probs=179.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.....+ ..+++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 57788887763210000 0113579999999999999999999999999999999999876 46899999998764
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046656 890 QE------TFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGES 960 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 960 (1326)
.. ..++.++|++|++ .+.+.+||+|++.+..... ........++.++++++.+++. ...+..+ .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 31 1345799999986 4567899999997654211 1223334455688999999996 5666654 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 69999999999999999999999999999999999999999999998765 899999999986 56678999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=336.09 Aligned_cols=214 Identities=29% Similarity=0.360 Sum_probs=178.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
+.++|+++.++ +.+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 46778877653 12359999999999999999999999999999999999876 45899999998763
Q ss_pred c-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 Q-----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~-----~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
. ...++.++|++|++. .+...||.||+.+..... ....++..+.+.++++.++|.++.++.++ .||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCC
Confidence 1 123567999999963 334579999998754221 23344445678899999999988887754 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||++. ++.+.||++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 56778999999986 79999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=326.69 Aligned_cols=213 Identities=25% Similarity=0.351 Sum_probs=175.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++.. .....+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47889998776411 011359999999999999999999999999999999999876 4689999999876
Q ss_pred Cccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046656 889 KQET------F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961 (1326)
Q Consensus 889 ~~~~------~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 961 (1326)
.... . ++.++|++|++.+++.+|+.||+.+....+ .....+..++++++++.+++.+..++.++ .
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----Q 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----h
Confidence 4311 1 246999999998888899999998765332 12333445678999999999877776653 5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999986 34 56999999986 67
Q ss_pred EEE
Q 046656 1041 EIY 1043 (1326)
Q Consensus 1041 ~~~ 1043 (1326)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=333.12 Aligned_cols=217 Identities=19% Similarity=0.255 Sum_probs=178.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367888887763 246999999999999999999999999999999999987532 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|+..+++.+||+||+.+....+. ..+.+..++.++++++.+++.+ ..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG-- 146 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--
Confidence 87631 2345679999999988999999999987654321 1123344556889999999842 333333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 147 ---GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999999864 689999999986 5778899999997
Q ss_pred c-----CcEEEEEcCC
Q 046656 1037 R-----GGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~-----gg~~~~~G~~ 1047 (1326)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 3 4899999875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=346.04 Aligned_cols=204 Identities=22% Similarity=0.315 Sum_probs=176.6
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc----cCCc---cc---c-cceEEEee
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY----PKKQ---ET---F-TRISGYCE 901 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~---~-~~~~gyv~ 901 (1326)
+...+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|. ++.. .. . ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999887 46899999996 2221 11 1 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 046656 902 QNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS 981 (1326)
Q Consensus 902 Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~ 981 (1326)
|+..+++.+||+||+.|+...+ ..+..+++++++++++.++|.+..+..++ .||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875433 23455566778999999999988887764 599999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 982 IIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 982 illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
||||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++.+.+|++++|++ |+++..|+..
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999998765 899999999987 67789999999986 7999999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=326.01 Aligned_cols=200 Identities=26% Similarity=0.381 Sum_probs=168.2
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 214 (1326)
.++.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~t 86 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMK 86 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCc
Confidence 3456999999999999999999999999999999999999887 9999999987754 23467999999998888999
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+||+.+.....+... .+....++++++.+||++..++. +.
T Consensus 87 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~ 127 (210)
T cd03269 87 VIDQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKR-----VE 127 (210)
T ss_pred HHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCc-----Hh
Confidence 9999988654322100 00112356678899998766643 45
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.|||||||||+||++++.+|++++|||||+|||+.++..+.+.++++.+ . +.+|+.++|+.+++.+++|++++|++|+
T Consensus 128 ~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCE
Confidence 7999999999999999999999999999999999999999999998764 2 4567778999999999999999999999
Q ss_pred EEEEc
Q 046656 375 IVYQG 379 (1326)
Q Consensus 375 iv~~G 379 (1326)
+++.|
T Consensus 206 i~~~~ 210 (210)
T cd03269 206 AVLYG 210 (210)
T ss_pred EEecC
Confidence 98764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=337.86 Aligned_cols=217 Identities=24% Similarity=0.332 Sum_probs=176.7
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888887764110 001359999999999999999999999999999999999876 46899999998754
Q ss_pred c-------ccccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046656 890 Q-------ETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGE 959 (1326)
Q Consensus 890 ~-------~~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 959 (1326)
. ...++.++|++|++ .+++ .||+||+.|..... ..+.++..+.++++++.++|. ...++.+
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP----- 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 2 12456789999986 3444 69999998764322 223344455688999999997 3556554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 369999999999999999999999999999999999999999999998777999999999986 57778999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 88888875
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=293.40 Aligned_cols=212 Identities=25% Similarity=0.361 Sum_probs=177.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+.++++..+... .+...||++|++.|++||-+||+|||||||||||-+|+|+.. +.+|+|.+.|++.
T Consensus 6 ii~~~~l~ktvg~~---------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQG---------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcCC---------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcch
Confidence 35566666555322 245789999999999999999999999999999999999887 4699999999986
Q ss_pred Ccc------c-ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046656 889 KQE------T-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961 (1326)
Q Consensus 889 ~~~------~-~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 961 (1326)
... . ..+.+|+|+|...+.|++|..||+.....++..... .......+.|+.+||.+-.+...+ .
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~HyP~-----q 146 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYPA-----Q 146 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccCcc-----c
Confidence 431 1 346899999999999999999999998887753222 223447789999999887666543 5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
|||||+|||+||||++..|+|||-||||-+||..+...|.+++-.+.+ .|.|.|++||||. +...|||++-|.. |+
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~ 223 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GR 223 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ce
Confidence 999999999999999999999999999999999999999999998864 5999999999985 6788999999986 67
Q ss_pred EE
Q 046656 1041 EI 1042 (1326)
Q Consensus 1041 ~~ 1042 (1326)
++
T Consensus 224 l~ 225 (228)
T COG4181 224 LV 225 (228)
T ss_pred ec
Confidence 65
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=328.29 Aligned_cols=203 Identities=30% Similarity=0.426 Sum_probs=171.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC--CccceEEEEccCCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF--VPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 214 (1326)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 56999999999999999999999999999999999999887 99999999887532 12356999999988888999
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+||+.+..+..+... . +....++++++.+||.+..++. +.
T Consensus 92 v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~ 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------S------------------------EIKEEVELLLRVLGLTDKANKR-----AR 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHHhCh-----hh
Confidence 9999998654332100 0 0112346678889998766654 45
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+.+++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999998753 3 667778899889999999999999999
Q ss_pred EEEEcChhhH
Q 046656 375 IVYQGPCELV 384 (1326)
Q Consensus 375 iv~~G~~~~~ 384 (1326)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988754
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=331.54 Aligned_cols=216 Identities=24% Similarity=0.317 Sum_probs=176.1
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC---CCeeEEEEEEc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYISGNITIS 884 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~ 884 (1326)
..++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3688999988763 2459999999999999999999999999999999999743 11358999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc----cccccc
Q 046656 885 GYPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL----RQSLVG 955 (1326)
Q Consensus 885 g~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~vg 955 (1326)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++.+. .+..+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESA- 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc-
Confidence 987642 123567999999988877 599999988653321 11223334568889999998542 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 956 ~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|
T Consensus 148 ----~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l 221 (253)
T PRK14242 148 ----LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFF 221 (253)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999854 799999999986 577889999999
Q ss_pred ecCcEEEEEcCC
Q 046656 1036 KRGGQEIYVGPL 1047 (1326)
Q Consensus 1036 ~~gg~~~~~G~~ 1047 (1326)
++ |+++..|+.
T Consensus 222 ~~-G~i~~~g~~ 232 (253)
T PRK14242 222 YM-GKLIEVGPT 232 (253)
T ss_pred EC-CEEEEeCCH
Confidence 86 788888874
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=335.80 Aligned_cols=217 Identities=22% Similarity=0.279 Sum_probs=181.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 578899988763 2469999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ...++.++|++|++.+++..|++|++.+....... .....+..++.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 32 22345689999999888889999999875211100 00011233456889999999988777765 36999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 58889999999985 78999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 225 ~g~~ 228 (265)
T PRK10253 225 QGAP 228 (265)
T ss_pred eCCH
Confidence 9885
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=340.05 Aligned_cols=218 Identities=23% Similarity=0.334 Sum_probs=176.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-------CccceEEEEccCC-C
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-------VPQRTAAYISQHD-V 208 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~ 208 (1326)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 99999999987531 1135799999985 2
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-cccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 287 (1326)
.+...||+||+.|+....+.. . .+....++.+++.+||. ...+
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~-- 140 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------E------------------------EDAKQKAREMIELVGLPEELLA-- 140 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCChhhhh--
Confidence 344679999999875432210 0 01112357789999996 4455
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
..++.|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++.. .+++|++++|+.+++.++||+|
T Consensus 141 ---~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 141 ---RSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 345679999999999999999999999999999999999999999999998653 3566777899999999999999
Q ss_pred EEecCCeEEEEcChhhHHH---HHHhcCCCCCC
Q 046656 368 ILLSDGQIVYQGPCELVLD---FFESMGFKCPE 397 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~~---~F~~lG~~~p~ 397 (1326)
++|++|+++++|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999888742 23344554443
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=334.19 Aligned_cols=216 Identities=27% Similarity=0.400 Sum_probs=178.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 45677776552 3569999999999999999999999999999999999876 45899999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHH-hhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAW-LRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~-lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
. ...++.++|++|+...++..||+||+.+... .+........+..+.++++++.+++.+..++.++ .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHH
Confidence 3 1234568999999877788999999987531 1100011112234568899999999887777654 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999987 57788999999986 6889988
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 75
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=327.93 Aligned_cols=207 Identities=24% Similarity=0.387 Sum_probs=169.6
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDV 208 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~ 208 (1326)
+++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.
T Consensus 9 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (222)
T cd03224 9 GYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85 (222)
T ss_pred ecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccc
Confidence 334457999999999999999999999999999999999999987 9999999988754332 356999999998
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc-CCccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL-GLDVCADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~ 287 (1326)
+++.+||+||+.++....+ . .+ ....++.+++.+ ++++..++
T Consensus 86 ~~~~~t~~~~l~~~~~~~~--~-----~~-----------------------------~~~~~~~~l~~~~~l~~~~~~- 128 (222)
T cd03224 86 IFPELTVEENLLLGAYARR--R-----AK-----------------------------RKARLERVYELFPRLKERRKQ- 128 (222)
T ss_pred cCCCCcHHHHHHHHhhhcC--c-----hh-----------------------------HHHHHHHHHHHHHhhhhhhhC-
Confidence 9999999999988653221 0 00 001123445555 45544443
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. .+++|++++|+..++.+++|+|
T Consensus 129 ----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i 202 (222)
T cd03224 129 ----LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRA 202 (222)
T ss_pred ----chhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEE
Confidence 4557999999999999999999999999999999999999999999999864 3566777889999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+.+++.
T Consensus 203 ~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 203 YVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEeeCCeEEEeCCHHHHh
Confidence 999999999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=337.86 Aligned_cols=223 Identities=25% Similarity=0.360 Sum_probs=180.5
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-------CccceEEEEccCC-CC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-------VPQRTAAYISQHD-VH 209 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 209 (1326)
.+|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+++.. ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987521 1235799999985 24
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 288 (1326)
+...||.||+.|+....+... .+....++++++.+||. ...+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~--- 139 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWE--- 139 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhcc---
Confidence 445799999999765432110 01122356778899995 3444
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.+|++++|+.+++.++||+|+
T Consensus 140 --~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 140 --KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred --CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEE
Confidence 45668999999999999999999999999999999999999999999998754 35667778999999999999999
Q ss_pred EecCCeEEEEcChhhHH---HHHHhcCCCCCCCCChHHH
Q 046656 369 LLSDGQIVYQGPCELVL---DFFESMGFKCPERKSVADF 404 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~---~~F~~lG~~~p~~~~~ad~ 404 (1326)
+|++|+++++|+++++. +.++..|+.+|.....++.
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 254 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQ 254 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999875 3355667777665444433
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=348.22 Aligned_cols=210 Identities=22% Similarity=0.315 Sum_probs=177.8
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEcc
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQ 205 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q 205 (1326)
.++...+|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|
T Consensus 37 ~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q 113 (400)
T PRK10070 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113 (400)
T ss_pred hcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence 344556899999999999999999999999999999999999987 9999999998765432 247999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
+..+++++||+||+.|+....+... .+....++++++.+||++..+
T Consensus 114 ~~~l~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 114 SFALMPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAH 159 (400)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhh
Confidence 9999999999999999765432110 001123567899999987665
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
. .++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++... .+++|+.++|+.+++.+++|
T Consensus 160 ~-----~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 160 S-----YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred c-----CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCC
Confidence 4 45679999999999999999999999999999999999999999999987653 35566778999999999999
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|++++.|+++++.
T Consensus 234 ri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 234 RIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEEEECCEEEecCCHHHHH
Confidence 99999999999999988774
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=332.75 Aligned_cols=217 Identities=21% Similarity=0.264 Sum_probs=177.7
Q ss_pred CceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--C-CeeEEEEEE
Q 046656 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGNITI 883 (1326)
Q Consensus 807 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i 883 (1326)
...++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 34688999988763 2369999999999999999999999999999999999864 2 135899999
Q ss_pred cCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 046656 884 SGYPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLV 954 (1326)
Q Consensus 884 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v 954 (1326)
+|.++.. ..+++.++|++|+..+++ .|++||+.+...... ..+.+..+++++++++.+++.+ ..+..+
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 154 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSG 154 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC
Confidence 9987632 134567999999988777 899999987643221 2233444456889999999843 334333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeE
Q 046656 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 955 g~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+.+|++++
T Consensus 155 -----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 155 -----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred -----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999986 4789999999986 56778999999
Q ss_pred EecCcEEEEEcCC
Q 046656 1035 MKRGGQEIYVGPL 1047 (1326)
Q Consensus 1035 l~~gg~~~~~G~~ 1047 (1326)
|++ |+++..|+.
T Consensus 228 l~~-G~i~~~g~~ 239 (260)
T PRK10744 228 MYL-GELIEFGNT 239 (260)
T ss_pred EEC-CEEEEeCCH
Confidence 985 799998875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=339.57 Aligned_cols=220 Identities=18% Similarity=0.237 Sum_probs=179.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC-C-eeEEEEEEcCcc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YISGNITISGYP 887 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~-~~~G~i~i~g~~ 887 (1326)
++++|+++.++.. .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888776421 1124699999999999999999999999999999999998652 1 368999999988
Q ss_pred CCcc---cc----cceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc---cccccc
Q 046656 888 KKQE---TF----TRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL---RQSLVG 955 (1326)
Q Consensus 888 ~~~~---~~----~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~vg 955 (1326)
+... .. ++.++|++|++ .+.|.+|+.+++....... .....++.++++.++++.++|.+. .+...
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p- 151 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP- 151 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc-
Confidence 6431 11 23699999997 4788899998887654322 123445556778999999999753 33333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeE
Q 046656 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 956 ~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
..||||||||++|||||+.+|++||+||||+|||+.++..+++.|+++.+ .|.|+|++|||++ .+.+.+|++++
T Consensus 152 ----~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 152 ----HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999976 4999999999986 46678999999
Q ss_pred EecCcEEEEEcCC
Q 046656 1035 MKRGGQEIYVGPL 1047 (1326)
Q Consensus 1035 l~~gg~~~~~G~~ 1047 (1326)
|.+ |+++..|+.
T Consensus 227 m~~-G~ive~g~~ 238 (326)
T PRK11022 227 MYA-GQVVETGKA 238 (326)
T ss_pred EEC-CEEEEECCH
Confidence 985 799999985
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.73 Aligned_cols=195 Identities=24% Similarity=0.364 Sum_probs=163.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDVHI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 210 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 46999999999999999999999999999999999999887 999999998875432 235799999999889
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++.+..+... .+....++++++.+||++..+.
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~---- 134 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHA---- 134 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhC----
Confidence 99999999998754322100 0011235667899999876654
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++.++||+|++|
T Consensus 135 -~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 135 -LPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3457999999999999999999999999999999999999999999998754 3 556777899998999999999999
Q ss_pred cCCeE
Q 046656 371 SDGQI 375 (1326)
Q Consensus 371 ~~G~i 375 (1326)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=330.81 Aligned_cols=213 Identities=29% Similarity=0.407 Sum_probs=172.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDVHI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 210 (1326)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 56999999999999999999999999999999999999887 999999998876432 135799999998889
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++..... ... .... +..+ .+....++.+++.+||.+..+.
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~~---~~~~------~~~~---------------~~~~~~~~~~l~~~~l~~~~~~---- 140 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--STW---RSLF------GLFP---------------KEEKQRALAALERVGLLDKAYQ---- 140 (241)
T ss_pred ccCcHHHHHHhhhcccc--hhh---hhhc------ccCc---------------HHHHHHHHHHHHHcCChhhhCC----
Confidence 99999999987542110 000 0000 0000 0011235667889999765554
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+++|++++|+.+++.+++|+|++|
T Consensus 141 -~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 141 -RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 45679999999999999999999999999999999999999999999998653 3456777889999999999999999
Q ss_pred cCCeEEEEcChhhH
Q 046656 371 SDGQIVYQGPCELV 384 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~ 384 (1326)
++|++++.|+++++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (241)
T cd03256 219 KDGRIVFDGPPAEL 232 (241)
T ss_pred ECCEEEeecCHHHh
Confidence 99999999998875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=329.84 Aligned_cols=215 Identities=22% Similarity=0.300 Sum_probs=174.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC---CCCeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~---~~~~~~G~i~i~g 885 (1326)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888887653 246999999999999999999999999999999999962 2212489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL----RQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. ....+...+.++++++.+++.+. .+..+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 144 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESA-- 144 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc--
Confidence 87642 134567999999988776 599999987654321 11222334568899999998642 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|+
T Consensus 145 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14245 145 ---FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY 219 (250)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999985 4899999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |++++.|+.
T Consensus 220 ~-G~~~~~~~~ 229 (250)
T PRK14245 220 M-GEMVEYDDT 229 (250)
T ss_pred C-CEEEEECCH
Confidence 5 799999975
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.83 Aligned_cols=198 Identities=25% Similarity=0.373 Sum_probs=167.7
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 46899999998764322 12489999999999899999998
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 046656 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~ 997 (1326)
+...... ...+..+.++.++++++.+++.+..++.++ .||||||||++|||+|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7532111 123334445568899999999887777653 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 998 AIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 998 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 57788999999986 788888764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=326.23 Aligned_cols=212 Identities=28% Similarity=0.402 Sum_probs=179.1
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
.++|+++.++ .+.+|+|+|++++|||+++|+|+||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4667776652 2469999999999999999999999999999999999877 458999999987643
Q ss_pred c-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046656 891 E-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969 (1326)
Q Consensus 891 ~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqr 969 (1326)
. ..++.++|++|+...++.+|+.||+.+....+ ..+.....+.++++++.+++.+..++.+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 12467899999998888899999998765433 1223334456889999999988777765 4699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 970 l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999998764 899999999986 57788999999985 788888864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=339.31 Aligned_cols=225 Identities=25% Similarity=0.273 Sum_probs=183.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478899987774211000 00123569999999999999999999999999999999999876 4589999999886
Q ss_pred Ccc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 046656 889 KQE------TFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGE 959 (1326)
Q Consensus 889 ~~~------~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~ 959 (1326)
... .+++.++||+|++ .+.|.+|+.+++.+..... ......+.++++.++++.++|.+ ..++.+
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 431 2456799999997 5788899999987654322 12345556677999999999963 455554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..||||||||++|||||+.+|++||+||||++||..++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999998764 999999999986 46678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 799999985
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=349.53 Aligned_cols=213 Identities=25% Similarity=0.398 Sum_probs=177.9
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVH 209 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~ 209 (1326)
+++.+++|+|+|+.+++||+++|+||||||||||||+|+|.++|. +|+|.++|.++..... ++.++||+|+..+
T Consensus 12 ~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l 88 (402)
T PRK09536 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSL 88 (402)
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCC
Confidence 344567999999999999999999999999999999999999987 9999999998765432 3679999999988
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.++..... .++.. . ..+....++++++.+||.+..+.
T Consensus 89 ~~~~tv~e~v~~~~~~~~--~~~~~---~-------------------------~~~~~~~v~~~le~vgl~~~~~~--- 135 (402)
T PRK09536 89 SFEFDVRQVVEMGRTPHR--SRFDT---W-------------------------TETDRAAVERAMERTGVAQFADR--- 135 (402)
T ss_pred CCCCCHHHHHHhccchhc--ccccC---C-------------------------CHHHHHHHHHHHHHcCCchhhcC---
Confidence 899999999998642110 00000 0 00112346778999999877764
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.++.|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|+.++|+.+++.++||++++
T Consensus 136 --~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~ 211 (402)
T PRK09536 136 --PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVL 211 (402)
T ss_pred --ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEE
Confidence 4557999999999999999999999999999999999999999999999875 3 45677789999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 212 l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 212 LADGRVRAAGPPADVL 227 (402)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999998864
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=296.99 Aligned_cols=206 Identities=24% Similarity=0.379 Sum_probs=178.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
..+|+|||+.|.+||.++++||||||||||||+++|..+|+ .|+|.+||+++.-. -..-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45999999999999999999999999999999999999998 99999999987643 33458999999999999999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
||++|+.++.|+.+. .| ..++.+.+..+||+...+ +++-.|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~-----~~i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEH-----KYIWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccc-----cceEee
Confidence 999999999887532 11 224567789999998776 456679
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec--CCe
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--DGQ 374 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 374 (1326)
||||||||.|||||+.+|+.|+||||+++||.-++.++.+.|-++.+.. +.-+..++|+.+|+.-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~t-gk~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET-GKQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999999988765 4555668999999999999999998 589
Q ss_pred EEEEcChhhHHHH
Q 046656 375 IVYQGPCELVLDF 387 (1326)
Q Consensus 375 iv~~G~~~~~~~~ 387 (1326)
|+..-+++-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988777654443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=334.46 Aligned_cols=215 Identities=24% Similarity=0.323 Sum_probs=179.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 4788999877631 12469999999999999999999999999999999999876 4589999999886
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ..+++.+||++|++. .++.+|++||+.+..... ..+.++..+.++++++.++|.+..++.+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998764321 2233444556899999999988777765 36999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ ++|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 599999999986 34 47999999985 78888
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=345.02 Aligned_cols=211 Identities=24% Similarity=0.299 Sum_probs=178.3
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCc----cCCCCCc-------cceE
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH----DMNEFVP-------QRTA 200 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~~~-------~~~~ 200 (1326)
++++...+|+|+|+.+++||+++|+||||||||||+++|+|+++|+ +|+|.++|. ++..... ++.+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 4556778999999999999999999999999999999999999987 999999996 3332211 2469
Q ss_pred EEEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Q 046656 201 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL 280 (1326)
Q Consensus 201 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 280 (1326)
+||+|++.+++.+||+||+.|+....+... .+....++++++.+||
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL 154 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGL 154 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCC
Confidence 999999999999999999999765432210 0112235678999999
Q ss_pred cccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH
Q 046656 281 DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET 360 (1326)
Q Consensus 281 ~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 360 (1326)
++..|. .+..|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.... +++|+.++|+.+++
T Consensus 155 ~~~~~~-----~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~ 228 (382)
T TIGR03415 155 AQWADK-----KPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEA 228 (382)
T ss_pred chhhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 876664 445799999999999999999999999999999999999999999999986533 56677789999999
Q ss_pred HhhCCeEEEecCCeEEEEcChhhHH
Q 046656 361 YDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 361 ~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
.+++|+|++|++|+++..|+++++.
T Consensus 229 ~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 229 LKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=364.62 Aligned_cols=222 Identities=21% Similarity=0.307 Sum_probs=186.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378889887763 3469999999999999999999999999999999999876433689999999876
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.... .++.+||++|++.+++.+||+||+.+....+.....+.+...+.++++++.+++.+..++.++ .|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCH
Confidence 4321 235699999999888999999999886432211112233344568999999999887777764 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||||++|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||++||+++ ++.+.+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999986 57778999999985 789999
Q ss_pred cCCCCC
Q 046656 1045 GPLGSN 1050 (1326)
Q Consensus 1045 G~~~~~ 1050 (1326)
|+..+.
T Consensus 225 ~~~~~~ 230 (506)
T PRK13549 225 RPAAGM 230 (506)
T ss_pred cccccC
Confidence 987654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=330.17 Aligned_cols=206 Identities=26% Similarity=0.399 Sum_probs=172.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 56999999999999999999999999999999999999987 9999999988754322 35789999999999999
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc--cccccccCc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV--CADTLVGDE 291 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 291 (1326)
||+||+.++.+..+... .+....++++++.+||+. ..+ +
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~-----~ 131 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFAD-----R 131 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHh-----c
Confidence 99999998654321100 001123466788999975 334 4
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.++.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+..++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 55679999999999999999999999999999999999999999999998653 35667778888888999999999999
Q ss_pred CCeEEEEcChhhHH
Q 046656 372 DGQIVYQGPCELVL 385 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~ 385 (1326)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987663
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=320.67 Aligned_cols=203 Identities=25% Similarity=0.296 Sum_probs=183.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc------c-ccceEEEeecCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE------T-FTRISGYCEQNDIHS 907 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gyv~Q~~~~~ 907 (1326)
..-++|+|++|+.||++.|||-||||||||+++|.++.. +..|+|.++|.++... . .++.++.|+|+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 457899999999999999999999999999999999887 5699999999986431 1 345789999999999
Q ss_pred CCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 046656 908 PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987 (1326)
Q Consensus 908 ~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 987 (1326)
|+.||.||..|+..++ .++++++++++.+.|+.+||.++.++.+. +||||+||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCcc-----cccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998766 57789999999999999999999998864 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCC
Q 046656 988 PTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGS 1049 (1326)
Q Consensus 988 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~ 1049 (1326)
|+|.|||--+..+++-|.++.++ ++|||++|||.+ |.+..-|||.+|+ +|+++..|++++
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 99999999999999999988654 899999999997 7888999999998 589999998743
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=343.41 Aligned_cols=210 Identities=28% Similarity=0.431 Sum_probs=176.7
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
-.|+|+||++++. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|+|||.+
T Consensus 350 ~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~d 414 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQD 414 (591)
T ss_pred CcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCee
Confidence 3599999999885 23569999999999999999999999999999999999765 48999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~ 957 (1326)
++. ..+|+.+|||||+..++. -||.+|+.|+. .+.+. ++|-++.+..++.+. .++.+|+.
T Consensus 415 ik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGer 484 (591)
T KOG0057|consen 415 IKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGER 484 (591)
T ss_pred HhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhc
Confidence 754 567889999999887765 59999999863 23333 336667777777553 33456654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
|. .|||||||||+||||++.+|+|+++|||||.||.++.+.+++.+++. ..|+|+|++.|+. +..+.||+|++|++
T Consensus 485 G~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 485 GL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDN 560 (591)
T ss_pred cc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEEC
Confidence 43 59999999999999999999999999999999999999999999994 4589999999986 46789999999997
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|++...|+.
T Consensus 561 -G~v~e~gth 569 (591)
T KOG0057|consen 561 -GTVKEYGTH 569 (591)
T ss_pred -CeeEEeccH
Confidence 688888985
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=317.24 Aligned_cols=190 Identities=57% Similarity=0.934 Sum_probs=161.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++.+ .+++.+|+|+|+++++||+++|+|+||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 46788888776421 012469999999999999999999999999999999999753224689999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 4 33456799999999888989999999874210 0 39999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998644678899999998657998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=336.05 Aligned_cols=219 Identities=21% Similarity=0.294 Sum_probs=180.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 377889988774210 0012469999999999999999999999999999999999876 4689999999876
Q ss_pred Cc----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 889 KQ----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 889 ~~----~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. ...++.+||++|++. .+...||.|++.|..... ..+..+.++.++++++.++|.+..++.++ .||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCC
Confidence 43 224567999999974 233468999998865322 23344555678999999999988887764 699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 999999999987 444 4999999986 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 99875
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=334.88 Aligned_cols=204 Identities=21% Similarity=0.206 Sum_probs=152.1
Q ss_pred CceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc
Q 046656 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886 (1326)
Q Consensus 807 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 886 (1326)
+..+.+.+|++.++.. .-+++.+++..++.-...+++|+||+||||+++++.|... +..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-
Confidence 3467888888766421 1168899999999999999999999999999999999665 3467776654
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 046656 887 PKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 887 ~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgG 965 (1326)
+..++|-.|...-+-.+.|.+- .+....+ +... .+.+++-+..+||.. ++... ..+||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la~~s-----i~~LSGG 486 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKT----EEEIRRHLGSFGLSGELALQS-----IASLSGG 486 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCC----HHHHHHHHHhcCCCchhhhcc-----ccccCCc
Confidence 3467898887554444444332 2222222 2222 233677889999974 23222 3469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +.-||++||+.+ -+-..|+.+.+.++|.-.-+.|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999998875 346999999965 4666799999999866555666
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
..
T Consensus 563 ~~ 564 (582)
T KOG0062|consen 563 GI 564 (582)
T ss_pred cH
Confidence 53
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=322.14 Aligned_cols=198 Identities=24% Similarity=0.294 Sum_probs=167.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
+++|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999877 458999999987643 2345679999999998888999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+.+...... ... ...++.++++++.+++.+..++.+ ..||+|||||++|||+|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987532111 111 222446788999999988777765 369999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 996 AAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
++..+.+.|+++.++ |+|||++||++. ++.+.+|++++|++ |+++..|+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999986 56778999999985 79888875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=339.30 Aligned_cols=224 Identities=20% Similarity=0.286 Sum_probs=181.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-eeEEEEEEcCcc
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGNITISGYP 887 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 887 (1326)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 57899998776421 12356999999999999999999999999999999999987632 238999999988
Q ss_pred CCcc---c---cc-ceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 046656 888 KKQE---T---FT-RISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG 958 (1326)
Q Consensus 888 ~~~~---~---~~-~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~ 958 (1326)
+... . ++ +.++||+|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+..-. .
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~--~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKM--Y 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcC--C
Confidence 6431 1 12 4799999997 67889999999977543321 23445556678999999999753322111 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+.+||||||||++|||||+.+|++||+||||+|||+.++..|++.|+++.++ |.|||++|||++ .+.+.+|++++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 3569999999999999999999999999999999999999999999999765 899999999986 46678999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 799999985
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=334.14 Aligned_cols=204 Identities=26% Similarity=0.311 Sum_probs=170.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCC-CCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDV-HIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 212 (1326)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 45999999999999999999999999999999999999987 9999999988764322 356999999852 4567
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.|+....+.. + .+....++.+++.+||.+..+. .
T Consensus 95 ~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~-----~ 135 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------K------------------------DEVERRVEEALKAVRMWDFRDK-----P 135 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcC-----C
Confidence 89999999864422110 0 0111235678899999876664 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|++++. . +.+|+.++|+.+++.++||+|++|++
T Consensus 136 ~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 136 PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKE 213 (274)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 557999999999999999999999999999999999999999999999864 3 56677789999999999999999999
Q ss_pred CeEEEEcChhhH
Q 046656 373 GQIVYQGPCELV 384 (1326)
Q Consensus 373 G~iv~~G~~~~~ 384 (1326)
|+++++|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998654
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=318.13 Aligned_cols=196 Identities=29% Similarity=0.581 Sum_probs=163.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-eeEEEEEEcCcc
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YISGNITISGYP 887 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~~~G~i~i~g~~ 887 (1326)
.+.|+|++|.++.+ .+++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999988643 13457999999999999999999999999999999999987632 568999999987
Q ss_pred CCc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 888 KKQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 888 ~~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
... ...++.++|++|++.+++.+||+||+.+..... .+..+ ..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHH
Confidence 643 234567999999999999999999998753211 22222 359999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 678777766543467888999999996 688775
Q ss_pred c
Q 046656 1045 G 1045 (1326)
Q Consensus 1045 G 1045 (1326)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=331.84 Aligned_cols=216 Identities=24% Similarity=0.279 Sum_probs=177.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC---CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999998653 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ..+++.++|++|++.+++. |+.||+.+....+.. ........+.++++++.+++.+ ..+..+
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 161 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPG-- 161 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCc--
Confidence 87642 1245678999999887774 999999986543311 1122333456889999999964 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|+
T Consensus 162 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 162 ---TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 789999999986 5677899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 799998874
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=326.41 Aligned_cols=201 Identities=30% Similarity=0.411 Sum_probs=169.5
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc--ccccceEEEee-cCCCCCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ--ETFTRISGYCE-QNDIHSPL 909 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~~ 909 (1326)
+.+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 44679999999999999999999999999999999999876 468999999986432 23456789997 55667788
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 046656 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 989 (1326)
Q Consensus 910 ~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPt 989 (1326)
+|++|++.+...++ ....++..+.++++++.+++.+..++.++ .||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998765432 22334445567889999999887777653 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 990 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 990 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 57788999999985 6887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=333.37 Aligned_cols=219 Identities=25% Similarity=0.361 Sum_probs=177.3
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC------eeEEEEEE
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YISGNITI 883 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~------~~~G~i~i 883 (1326)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 46777776652 346999999999999999999999999999999999987632 12799999
Q ss_pred cCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046656 884 SGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL-RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959 (1326)
Q Consensus 884 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 959 (1326)
+|.+... ..+++.++|++|++..++.+|++||+.+...... .......+.++.++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987642 2344568999999876667899999987532111 011111233456889999999988777665
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHh
Q 046656 960 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAF 1029 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 1029 (1326)
..||||||||++|||+|+ .+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 369999999999999999 599999999999999999999999999998765 899999999986 577789
Q ss_pred ceeeEEecCcEEEEEcCCC
Q 046656 1030 DELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 1030 D~v~~l~~gg~~~~~G~~~ 1048 (1326)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 7999998853
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=339.08 Aligned_cols=205 Identities=24% Similarity=0.353 Sum_probs=170.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC-----------------------
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE----------------------- 193 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------------------- 193 (1326)
..+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999987 8999999875421
Q ss_pred ----CCccceEEEEccCC-CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHH
Q 046656 194 ----FVPQRTAAYISQHD-VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEAN 268 (1326)
Q Consensus 194 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~ 268 (1326)
...++.+|||+|++ ..+...||+||+.|+....+... .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 01135799999984 34556899999998754432110 0112
Q ss_pred HHHHHHHHHcCCc-ccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 046656 269 VLTDYYLKVLGLD-VCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG 347 (1326)
Q Consensus 269 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~ 347 (1326)
..++++++.+||+ +..+ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .+
T Consensus 143 ~~~~~~l~~~gL~~~~~~-----~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQ-----RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QG 215 (305)
T ss_pred HHHHHHHHHcCCChhhhh-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CC
Confidence 2356789999996 4444 45668999999999999999999999999999999999999999999999863 35
Q ss_pred EEEEEEecChhhHHhhCCeEEEecCCeEEEEcChhhHH
Q 046656 348 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 348 t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
.+|++++|+.+++.++||+|++|++|+++++|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 66777899999999999999999999999999998875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=323.50 Aligned_cols=198 Identities=27% Similarity=0.376 Sum_probs=166.7
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-CccceEEEEccCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-VPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~ 212 (1326)
++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPN 86 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCcc
Confidence 34457999999999999999999999999999999999999887 99999999876532 123579999999888999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.+.....+. ....++++++.+||++..+..
T Consensus 87 ~tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~----- 123 (208)
T cd03268 87 LTARENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKK----- 123 (208)
T ss_pred CcHHHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhh-----
Confidence 9999999886432110 001245678888998766643
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. . +.+++.++|+.+++.+++|++++|++
T Consensus 124 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 457999999999999999999999999999999999999999999998764 3 45666688999899999999999999
Q ss_pred CeEEEEc
Q 046656 373 GQIVYQG 379 (1326)
Q Consensus 373 G~iv~~G 379 (1326)
|++++.|
T Consensus 202 g~i~~~g 208 (208)
T cd03268 202 GKLIEEG 208 (208)
T ss_pred CEEEecC
Confidence 9998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=365.80 Aligned_cols=208 Identities=28% Similarity=0.378 Sum_probs=177.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+|+|+. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 6899999998842 22469999999999999999999999999999999999987 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~ 958 (1326)
++ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+.. |+.+|..
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 54 456788999999998876 59999998742 1 22 23477888888887543 4556543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|++||+++ ..+.+|+|++|++
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999876 689999999985 5677999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 799999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=326.27 Aligned_cols=201 Identities=27% Similarity=0.402 Sum_probs=172.9
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +..|+|.++|.++... ..++.++|++|++.+++..|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 469999999999999999999999999999999999876 4589999999876432 2345799999999888889999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD 993 (1326)
||+.+....+ ........+.++++++.+++.+..++..+ .||+||+||++|||+|+.+|++++|||||+|||
T Consensus 91 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 91 DNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998765432 12233334567899999999887777653 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 994 ARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 994 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999998765 899999999986 57788999999985 788998885
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=326.32 Aligned_cols=195 Identities=27% Similarity=0.387 Sum_probs=162.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-------ccceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-------PQRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 209 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 57999999999999999999999999999999999999987 999999998876432 13579999999988
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.++....+... .+....++.+++.+||++..+.
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~--- 136 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNH--- 136 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhc---
Confidence 999999999998654322100 0011235667899999876654
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++. .||++++
T Consensus 137 --~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 137 --YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred --ChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHh-hhcEEEE
Confidence 44579999999999999999999999999999999999999999999998652 2456666788887776 9999999
Q ss_pred ecCCeE
Q 046656 370 LSDGQI 375 (1326)
Q Consensus 370 L~~G~i 375 (1326)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=333.68 Aligned_cols=208 Identities=21% Similarity=0.330 Sum_probs=172.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~ 209 (1326)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 95 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGAL 95 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEeccccc
Confidence 456999999999999999999999999999999999999887 999999998875432 13569999999888
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.++...... .+ .. +....++.+++.+||++..+..
T Consensus 96 ~~~~tv~enl~~~~~~~~~---~~------~~------------------------~~~~~~~~~l~~~gl~~~~~~~-- 140 (269)
T PRK11831 96 FTDMNVFDNVAYPLREHTQ---LP------AP------------------------LLHSTVMMKLEAVGLRGAAKLM-- 140 (269)
T ss_pred CCCCCHHHHHHHHHHHccC---CC------HH------------------------HHHHHHHHHHHHcCChhhhhCC--
Confidence 8999999999885422100 00 00 0112345678899998766654
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+.+++.++||+|++
T Consensus 141 ---~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~ 216 (269)
T PRK11831 141 ---PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYI 216 (269)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEE
Confidence 4579999999999999999999999999999999999999999999998653 356677788999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 217 l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 217 VADKKIVAHGSAQALQ 232 (269)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=322.97 Aligned_cols=192 Identities=29% Similarity=0.367 Sum_probs=161.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCC-CCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDV-HIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 215 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 57999999999999999999999999999999999999987 9999999988754333467999999863 3457899
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
+||+.++....+ . ....++++++.+||++..++. +..
T Consensus 90 ~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~~ 126 (205)
T cd03226 90 REELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERH-----PLS 126 (205)
T ss_pred HHHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCC-----chh
Confidence 999987543210 0 001245678999998766644 457
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA--QGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 355667788998899999999999999997
Q ss_pred E
Q 046656 376 V 376 (1326)
Q Consensus 376 v 376 (1326)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=332.22 Aligned_cols=215 Identities=24% Similarity=0.297 Sum_probs=179.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4788999887631 11358999999999999999999999999999999999876 4689999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ...++.++|++|++. +++..|+.+|+.|..... ....+...+.++++++.+++.+..+..+ ..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999974 677789999998864322 2233444556889999999988777665 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||++. ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 454 4999999985 79999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 223 ~g~~ 226 (269)
T PRK13648 223 EGTP 226 (269)
T ss_pred ecCH
Confidence 9885
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=328.07 Aligned_cols=215 Identities=21% Similarity=0.279 Sum_probs=175.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC-CeeEEEEEEcCccC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITISGYPK 888 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~ 888 (1326)
++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778877663 24699999999999999999999999999999999997642 24689999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCCCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL----RQSLVGLPGESG 961 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~vg~~~~~~ 961 (1326)
.. ...++.++|++|++.+++ .|++||+.+....+.... .....+++++++++.+++.+. .+.. ...
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALA 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-----ccc
Confidence 43 234567999999988887 699999988654331111 122334567889999999532 3332 246
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|++ |++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999864 899999999986 57788999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
+..|+.
T Consensus 220 ~~~g~~ 225 (246)
T PRK14269 220 IEFGES 225 (246)
T ss_pred EEECCH
Confidence 998874
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=336.58 Aligned_cols=219 Identities=19% Similarity=0.311 Sum_probs=177.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++... .....+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 478899988764210 001359999999999999999999999999999999999876 4589999999875
Q ss_pred Cc--------ccccceEEEeecCCCC-CCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 046656 889 KQ--------ETFTRISGYCEQNDIH-SPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPG 958 (1326)
Q Consensus 889 ~~--------~~~~~~~gyv~Q~~~~-~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~ 958 (1326)
.. ...++.++|++|++.. ....|++||+.|..... ....+...+.++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 31 2345679999999632 23469999998864321 223344445688899999994 5666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 369999999999999999999999999999999999999999999998754 899999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 789988874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=328.29 Aligned_cols=209 Identities=25% Similarity=0.352 Sum_probs=174.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367888887653 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSg 964 (1326)
.. ...++.++|++|++.+++ .|++||+.+....+ . . ..+.++++++.+++. +..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDV-----KNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCc-----ccCCH
Confidence 32 234567999999988776 69999998753321 1 1 124578899999996 4555544 46999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 57778999999986 68888
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=321.02 Aligned_cols=189 Identities=23% Similarity=0.356 Sum_probs=162.2
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEeecCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-------ETFTRISGYCEQNDIHS 907 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~ 907 (1326)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999876 468999999987431 12346799999999888
Q ss_pred CCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 046656 908 PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987 (1326)
Q Consensus 908 ~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 987 (1326)
+..|++||+.+..... ........+.++++++.+++.+..++.+. .||+|||||++|||+|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8899999999865432 22334445678899999999887777653 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 988 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 988 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
||+|||+.++..+.+.|+++.++|.|||++||++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999975 34679999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=324.84 Aligned_cols=198 Identities=29% Similarity=0.426 Sum_probs=166.6
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC--CccceEEEEccCCCCCCCCCH
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF--VPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999987 99999999887532 123579999999988898999
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
+||+.+.....+.. . .+....++++++.+||++..+. .+..
T Consensus 96 ~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------G------------------------DELTARLEELADRLGMEELLDR-----RVGG 136 (218)
T ss_pred HHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHHhh-----hhhh
Confidence 99998754332110 0 0112235678899999876664 4457
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. .+.+++.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 355677788998899999999999999999
Q ss_pred EEEc
Q 046656 376 VYQG 379 (1326)
Q Consensus 376 v~~G 379 (1326)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=326.25 Aligned_cols=207 Identities=27% Similarity=0.389 Sum_probs=170.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc--cceEEEEccCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP--QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~ 212 (1326)
+++++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~ 88 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLD 88 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCccc
Confidence 3457999999999999999999999999999999999999987 9999999987754322 2579999999888889
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.+.....+.. . .+....++++++.+||+...++.
T Consensus 89 ~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~----- 129 (236)
T TIGR03864 89 LSVRQNLRYHAALHGLS----------R------------------------AEARERIAALLARLGLAERADDK----- 129 (236)
T ss_pred CcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCC-----
Confidence 99999998754332110 0 00112346678889998766644
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+.++++++|+.+++. .+|++++|++
T Consensus 130 ~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~i~~l~~ 207 (236)
T TIGR03864 130 VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIE-ADDRLVVLHR 207 (236)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHh-hCCEEEEEeC
Confidence 4579999999999999999999999999999999999999999999998643 3456666888888876 4999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|++++.|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (236)
T TIGR03864 208 GRVLADGAAAELR 220 (236)
T ss_pred CeEEEeCCHHHHH
Confidence 9999999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=330.28 Aligned_cols=214 Identities=25% Similarity=0.339 Sum_probs=172.0
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~ 209 (1326)
++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc
Confidence 456999999999999999999999999999999999999887 999999998875432 24569999999888
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.++..... ..+. ... +..+ .+....++++++.+||++..+.
T Consensus 91 ~~~~tv~~~l~~~~~~~~--~~~~---~~~------~~~~---------------~~~~~~~~~~l~~~~l~~~~~~--- 141 (243)
T TIGR02315 91 IERLTVLENVLHGRLGYK--PTWR---SLL------GRFS---------------EEDKERALSALERVGLADKAYQ--- 141 (243)
T ss_pred cccccHHHHHhhcccccc--cchh---hhh------cccc---------------HHHHHHHHHHHHHcCcHhhhcC---
Confidence 999999999987532110 0000 000 0000 0011235667889999765554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.++||+|++
T Consensus 142 --~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~ 218 (243)
T TIGR02315 142 --RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVG 218 (243)
T ss_pred --CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEE
Confidence 45679999999999999999999999999999999999999999999998653 355677788999899999999999
Q ss_pred ecCCeEEEEcChhhH
Q 046656 370 LSDGQIVYQGPCELV 384 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~ 384 (1326)
|++|++++.|+++++
T Consensus 219 l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 219 LKAGEIVFDGAPSEL 233 (243)
T ss_pred EECCEEEecCCHHHh
Confidence 999999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=334.16 Aligned_cols=217 Identities=23% Similarity=0.302 Sum_probs=180.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCe-eEEEEEEcCcc
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ISGNITISGYP 887 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~-~~G~i~i~g~~ 887 (1326)
.++++|+++.++. ..+.+|+|+|++|++||+++|+|+||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788888877631 12359999999999999999999999999999999999876321 13999999988
Q ss_pred CCcc---cccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 888 KKQE---TFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 888 ~~~~---~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.... ..++.+||++|++. .++..||+||+.|..... ..+.++.++.++++++.++|.+..++.+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 6432 23567899999974 566789999998764322 2344555567899999999998777765 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ +.+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999986 34 57999999985 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
..|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99975
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=320.16 Aligned_cols=224 Identities=23% Similarity=0.335 Sum_probs=180.3
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC-C--CeeEEEEEEcCc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYISGNITISGY 886 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~-~--~~~~G~i~i~g~ 886 (1326)
++.+|++.++... .+...+++||||++++||++||+|.|||||||+.++|.|+.+ + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4567776655432 123579999999999999999999999999999999999875 2 256789999998
Q ss_pred cCCc---c---c-ccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCC-CHHHHHHHHHHHHHHcCCcccccccccC
Q 046656 887 PKKQ---E---T-FTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEV-DSETRKMFIEEIMELVELKPLRQSLVGL 956 (1326)
Q Consensus 887 ~~~~---~---~-~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~-~~~~~~~~v~~~l~~l~l~~~~~~~vg~ 956 (1326)
++-. . . .-+.+++++|++ .+.|.+||.+.+.-...... .. .+++..+++.++|+.+++.+-....-..
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 6522 1 1 224789999996 46788999887765443321 12 3455677899999999998643222222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
| .+|||||||||.||.||+.+|++||.||||++||...+++|+++|+++.+ .|.|+|++|||+. -+.+.+|||+||
T Consensus 151 P--helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 151 P--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred C--cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 2 46999999999999999999999999999999999999999999999986 5999999999997 488899999999
Q ss_pred ecCcEEEEEcCCC
Q 046656 1036 KRGGQEIYVGPLG 1048 (1326)
Q Consensus 1036 ~~gg~~~~~G~~~ 1048 (1326)
. .|++|..|+..
T Consensus 228 Y-aG~iVE~g~~~ 239 (316)
T COG0444 228 Y-AGRIVEEGPVE 239 (316)
T ss_pred E-CcEEEEeCCHH
Confidence 9 58999999963
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=327.32 Aligned_cols=216 Identities=22% Similarity=0.288 Sum_probs=177.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--CC-eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 467888887763 2469999999999999999999999999999999999864 21 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ..+++.++|++|+..+++.+|++||+.+...... ..+..+.++.++++++.+++.. ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSN--- 145 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 2346679999999988998999999987543221 1223333456788999999854 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.||++++|.
T Consensus 146 --~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14256 146 --AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY 221 (252)
T ss_pred --cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE
Confidence 246999999999999999999999999999999999999999999999875 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14256 222 M-GDLVECGET 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 799998875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=324.35 Aligned_cols=199 Identities=30% Similarity=0.396 Sum_probs=171.6
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999876 4689999999876431 234578999999988989999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+.+..... .....+..+.+.++++.++|.+..++.+. .||||||||++|||||+++|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764322 12333444567889999999887777753 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 996 AAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
++..+.+.|+++..+ |+|||++||++. ++.+.+|++++|++ |+++..|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998764 999999999986 57778999999985 788988874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=331.47 Aligned_cols=214 Identities=22% Similarity=0.266 Sum_probs=175.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC---CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 885 (1326)
.+.++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999987763 24699999999999999999999999999999999998642 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++ .||+||+.+.+..+. ... ..++.++++++.+++.. ..+..+
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 152 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNESG-- 152 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCCc--
Confidence 87531 234567999999988887 499999988654321 112 22345778888888742 334333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.||++++|+
T Consensus 153 ---~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 153 ---YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 46999999999999999999999999999999999999999999999854 799999999986 6788999999998
Q ss_pred c----------CcEEEEEcCC
Q 046656 1037 R----------GGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~----------gg~~~~~G~~ 1047 (1326)
+ +|++++.|+.
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccccccceEEEeCCH
Confidence 6 3678999875
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=338.04 Aligned_cols=216 Identities=22% Similarity=0.404 Sum_probs=174.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-------------------Ccc
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-------------------VPQ 197 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~ 197 (1326)
+++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35899999999999999999999999999999999999987 99999999886532 113
Q ss_pred ceEEEEccCC--CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHH
Q 046656 198 RTAAYISQHD--VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYL 275 (1326)
Q Consensus 198 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l 275 (1326)
+.++||+|++ .++ ..||+||+.|+....+.. . .+....+++++
T Consensus 116 ~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLF-KDTIEKDIMFGPVALGVK----------K------------------------SEAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhccc-cchHHHHHHhhHHhcCCC----------H------------------------HHHHHHHHHHH
Confidence 6799999985 344 469999999865322110 0 01112356678
Q ss_pred HHcCCc-ccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEe
Q 046656 276 KVLGLD-VCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLL 354 (1326)
Q Consensus 276 ~~lgL~-~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~ 354 (1326)
+.+||+ ...+ +.+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.. .+++|++++
T Consensus 161 ~~~gL~~~~~~-----~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~--~g~Tiiivt 233 (320)
T PRK13631 161 NKMGLDDSYLE-----RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVIT 233 (320)
T ss_pred HHcCCChhHhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEe
Confidence 999996 3343 45668999999999999999999999999999999999999999999998754 356677789
Q ss_pred cChhhHHhhCCeEEEecCCeEEEEcChhhHH---HHHHhcCCCCCC
Q 046656 355 QPAPETYDLFDDIILLSDGQIVYQGPCELVL---DFFESMGFKCPE 397 (1326)
Q Consensus 355 q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~---~~F~~lG~~~p~ 397 (1326)
|+.+++.++||+|++|++|++++.|+++++. +.++..|+.+|.
T Consensus 234 Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9998899999999999999999999998874 234455665554
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=338.33 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=178.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC--CeeEEEEEEcCc
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYISGNITISGY 886 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~ 886 (1326)
-+.++|+++.++.. .+...+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 36788888776421 1235699999999999999999999999999999999998652 246899999998
Q ss_pred cCCcc---c----ccceEEEeecCCC--CCCCCCHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHHHcCCccc---cc
Q 046656 887 PKKQE---T----FTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLRTE---VDSETRKMFIEEIMELVELKPL---RQ 951 (1326)
Q Consensus 887 ~~~~~---~----~~~~~gyv~Q~~~--~~~~~Tv~E~l~f~~~lr~~~~---~~~~~~~~~v~~~l~~l~l~~~---~~ 951 (1326)
++... . .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.++|.+. .+
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 76431 1 1246999999975 5688999999976422110000 1122345578899999999753 33
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhc
Q 046656 952 SLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFD 1030 (1326)
Q Consensus 952 ~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D 1030 (1326)
+.. ..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|
T Consensus 154 ~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SFP-----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CCc-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 433 469999999999999999999999999999999999999999999999864 999999999986 5778899
Q ss_pred eeeEEecCcEEEEEcCC
Q 046656 1031 ELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1031 ~v~~l~~gg~~~~~G~~ 1047 (1326)
++++|.+ |+++..|+.
T Consensus 228 ri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 228 KINVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEEC-CEEEEECCH
Confidence 9999985 799999985
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=333.37 Aligned_cols=216 Identities=21% Similarity=0.324 Sum_probs=175.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHD-VHIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 212 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999987 9999999998764322 35799999986 36778
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.|+.+..+... .+....++++++.+||++..+. .
T Consensus 97 ~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~-----~ 137 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKER-----E 137 (279)
T ss_pred ccHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhC-----C
Confidence 899999998654322100 0112235678999999876654 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.++++++. .+++|++++|+.+++ ..||+|++|++
T Consensus 138 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 5679999999999999999999999999999999999999999999998653 356666678888887 58999999999
Q ss_pred CeEEEEcChhhHHH---HHHhcCCCCC
Q 046656 373 GQIVYQGPCELVLD---FFESMGFKCP 396 (1326)
Q Consensus 373 G~iv~~G~~~~~~~---~F~~lG~~~p 396 (1326)
|+++..|+++++.. .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999987752 2334455433
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=327.53 Aligned_cols=207 Identities=20% Similarity=0.328 Sum_probs=172.3
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-----ccceEEEEccCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-----PQRTAAYISQHDVH 209 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 209 (1326)
+++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (240)
T PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYL 88 (240)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEeccccc
Confidence 3456999999999999999999999999999999999999887 999999998875421 13579999999888
Q ss_pred CCCCCHHHHHHhhhhh-ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 210 IGEMTVRETLAFSARC-QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
++.+||+||+.|+... .+.. . .+....++++++.+||+...+.
T Consensus 89 ~~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~-- 132 (240)
T PRK09493 89 FPHLTALENVMFGPLRVRGAS----------K------------------------EEAEKQARELLAKVGLAERAHH-- 132 (240)
T ss_pred CCCCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChHHHhc--
Confidence 8899999999885421 1100 0 0011234677889999765554
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.++.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. . +++++.++|+.+++.++||+++
T Consensus 133 ---~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~ 207 (240)
T PRK09493 133 ---YPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLI 207 (240)
T ss_pred ---ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4567999999999999999999999999999999999999999999998754 2 5567778899999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++++.|+.+++.
T Consensus 208 ~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 208 FIDKGRIAEDGDPQVLI 224 (240)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999988764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=329.06 Aligned_cols=222 Identities=22% Similarity=0.258 Sum_probs=178.9
Q ss_pred CCceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC---CeeEEEEE
Q 046656 806 EPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGNIT 882 (1326)
Q Consensus 806 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~ 882 (1326)
.+..+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344689999988763 24699999999999999999999999999999999998653 14689999
Q ss_pred EcCccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 046656 883 ISGYPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957 (1326)
Q Consensus 883 i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~ 957 (1326)
++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.++++++.++|.+..+.....
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~- 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHK- 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcC-
Confidence 99987632 123567999999988777 59999998864321 1112334456688899999985322111111
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 134699999999999999999999999999999999999999999999985 4799999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 238 -G~i~~~g~~ 246 (267)
T PRK14237 238 -GDLIEYDKT 246 (267)
T ss_pred -CEEEEeCCH
Confidence 799999985
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=320.60 Aligned_cols=191 Identities=25% Similarity=0.379 Sum_probs=163.2
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
|+|++|++ |+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999876 458999999987531 1235679999999988888999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
+||+.+..... .....++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764221 22233456889999999987766655 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 993 DARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 56778999999986 6877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=328.99 Aligned_cols=206 Identities=23% Similarity=0.338 Sum_probs=171.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-----------CccceEEEEc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-----------VPQRTAAYIS 204 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~ 204 (1326)
.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 456999999999999999999999999999999999999887 99999999887532 1235799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhh-ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc
Q 046656 205 QHDVHIGEMTVRETLAFSARC-QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 283 (1326)
|++.+++.+||+||+.++... .+.. . .+....++.+++.+||+..
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~ 137 (250)
T PRK11264 92 QNFNLFPHRTVLENIIEGPVIVKGEP----------K------------------------EEATARARELLAKVGLAGK 137 (250)
T ss_pred cCcccCCCCCHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCcch
Confidence 998888899999999885321 1100 0 0011234667888999876
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
.|+ .++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++.++
T Consensus 138 ~~~-----~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~ 210 (250)
T PRK11264 138 ETS-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDV 210 (250)
T ss_pred hhC-----ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHh
Confidence 554 4567999999999999999999999999999999999999999999998864 2 45667789999999999
Q ss_pred CCeEEEecCCeEEEEcChhhHH
Q 046656 364 FDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|+|++|++|++++.|+.+++.
T Consensus 211 ~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 211 ADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred cCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988763
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=325.06 Aligned_cols=211 Identities=24% Similarity=0.305 Sum_probs=175.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++. + ..|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 467788877631 1 238999999999999999999999999999999876 46899999998764
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+++.+..++.+. .|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHH
Confidence 32 12456899999999899899999998753211 111 12334568999999999888887764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999986 57788999999985 799999875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=337.72 Aligned_cols=209 Identities=22% Similarity=0.261 Sum_probs=175.0
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCC--
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHD-- 207 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 207 (1326)
...+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 356999999999999999999999999999999999999987 9999999998865432 35799999996
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADT 286 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 286 (1326)
.++|.+||.||+.+..+..... ..+ .+....++++++.+||. ...
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~~------------------------~~~~~~~~~~l~~vgl~~~~~-- 155 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LSR------------------------QEVKDRVKAMMLKVGLLPNLI-- 155 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CCH------------------------HHHHHHHHHHHHHcCCChHHh--
Confidence 5788999999999865432100 000 01122356778999994 333
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
+..+..|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+. .+.+++.++|+...+.+++|+
T Consensus 156 ---~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 156 ---NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred ---cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCE
Confidence 3566789999999999999999999999999999999999999999999998653 356777799999999999999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998874
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=321.99 Aligned_cols=199 Identities=30% Similarity=0.420 Sum_probs=166.8
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 212 (1326)
..+++|+|+|+.+++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 11 ~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (211)
T cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86 (211)
T ss_pred CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCccccc
Confidence 3456999999999999 99999999999999999999999987 999999998875432 24679999999988999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.+.....+... .+....++.+++.+||++..++.
T Consensus 87 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 127 (211)
T cd03264 87 FTVREFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKK----- 127 (211)
T ss_pred CCHHHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCc-----
Confidence 999999998654321100 00112356778899998766654
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. + ++++.++|+.+++.+++|++++|++
T Consensus 128 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 128 IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999998753 3 5677788999999999999999999
Q ss_pred CeEEEEc
Q 046656 373 GQIVYQG 379 (1326)
Q Consensus 373 G~iv~~G 379 (1326)
|++++.|
T Consensus 205 g~i~~~g 211 (211)
T cd03264 205 GKLVFEG 211 (211)
T ss_pred CEEEecC
Confidence 9998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=342.18 Aligned_cols=190 Identities=25% Similarity=0.394 Sum_probs=167.5
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
+||+.|+.. ...++.++++++.++|.+..++.++ .||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988532 1123458899999999888877753 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 993 DARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999986 67888999999985 799999985
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=330.09 Aligned_cols=224 Identities=21% Similarity=0.266 Sum_probs=179.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++.+.. +...+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3788999887742100 000012469999999999999999999999999999999999877 4689999999876
Q ss_pred Ccc---cccceEEEeecCCC--CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCC
Q 046656 889 KQE---TFTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~--~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~L 962 (1326)
... ..++.++|++|++. +.+.+|+.|++.+..... .........+.++++++.+++. +..+..+ ..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN--TDLEPEQREKQIIETLRQVGLLPDHASYYP-----HML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhc
Confidence 421 22356899999874 567789999998765432 1223334445688999999994 5555554 369
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
|||||||++||++|+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...||++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999986 57778999999985 788
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
++.|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 888874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=359.92 Aligned_cols=219 Identities=26% Similarity=0.342 Sum_probs=184.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|++++++ ++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67888887763 3469999999999999999999999999999999999876 45899999998764
Q ss_pred cc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 890 QE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 890 ~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ..++.+||++|++.+++.+||+|++.|+...+.. ...+..+.++.++++++.++|.+..++.++ .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCH
Confidence 21 1235689999999888999999999886432211 112233344568899999999988777764 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||||++||+||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++|||++ ++.+.||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 799999
Q ss_pred cCCCCC
Q 046656 1045 GPLGSN 1050 (1326)
Q Consensus 1045 G~~~~~ 1050 (1326)
|+..+.
T Consensus 223 ~~~~~~ 228 (501)
T PRK10762 223 REVADL 228 (501)
T ss_pred cCcCcC
Confidence 987654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=324.17 Aligned_cols=201 Identities=24% Similarity=0.330 Sum_probs=166.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 209 (1326)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999887 9999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.+.....+... .+....++++++.+||++..+.
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~--- 141 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANH--- 141 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhC---
Confidence 899999999998654321100 0011235677899999876654
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.+..|||||||||+||++++.+|+++||||||+|||+.++..+.+.|+++... ++++|+.++|+.+++.. +|++++
T Consensus 142 --~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 142 --RPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 34579999999999999999999999999999999999999999999987543 35566668888887766 589999
Q ss_pred ecCCeEEEEcCh
Q 046656 370 LSDGQIVYQGPC 381 (1326)
Q Consensus 370 L~~G~iv~~G~~ 381 (1326)
|++|+++..|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=342.47 Aligned_cols=194 Identities=25% Similarity=0.390 Sum_probs=169.3
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEeecCCCCCCCCCH
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-------ETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 9999999999999999999999999999999876 458999999987632 1235679999999999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
+||+.|+.... ...+.++.++++++.++|.+..++.++ .||||||||++|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 123334568999999999988887753 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 993 DARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999998765 899999999986 67788999999986 799999875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=337.24 Aligned_cols=207 Identities=28% Similarity=0.422 Sum_probs=169.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
++||+++||+|++||-+||+|+|||||||+|++|.+..+ . +|+|.+||.++.+... |+.+|||||+..+| +.
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-nd 439 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-ND 439 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-ch
Confidence 459999999999999999999999999999999999998 4 8999999999876654 57899999976655 67
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||.+||.++..- ..++.+.+.|++ +++ .|. ...|++..+|.||+++.
T Consensus 440 TIl~NI~YGn~s----as~eeV~e~~k~---a~~-----------------------hd~---i~~l~~GY~T~VGerG~ 486 (591)
T KOG0057|consen 440 TILYNIKYGNPS----ASDEEVVEACKR---AGL-----------------------HDV---ISRLPDGYQTLVGERGL 486 (591)
T ss_pred hHHHHhhcCCCC----cCHHHHHHHHHH---cCc-----------------------HHH---HHhccccchhhHhhccc
Confidence 999999997432 122223333332 211 111 22478899999997654
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
-|||||||||++|||++.+|+|+++|||||.||+.|..++++.+.+. .++.|+|.+.|+. .+...||+|++|++|
T Consensus 487 -~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~---~~~rTvI~IvH~l-~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 487 -MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV---MSGRTVIMIVHRL-DLLKDFDKIIVLDNG 561 (591)
T ss_pred -ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh---cCCCeEEEEEecc-hhHhcCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999984 3455566677776 467789999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
++...|+.++++.
T Consensus 562 ~v~e~gth~ell~ 574 (591)
T KOG0057|consen 562 TVKEYGTHSELLA 574 (591)
T ss_pred eeEEeccHHHHhh
Confidence 9999999999875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=335.65 Aligned_cols=220 Identities=19% Similarity=0.243 Sum_probs=178.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC---CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 885 (1326)
.++++|+++.+.. +.+.+|+|+|++|++||++||+|+||||||||+++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5889999887741 124699999999999999999999999999999999997642 24589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD-SETRKMFIEEIMELVELKPLRQSLVGLPGE 959 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~-~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 959 (1326)
.++.. ...++.++||+|++.++. .|++||+.|+.... ... .+...+.++++++.++|.+-.+..++.. +
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 98742 234667999999988774 79999999864321 122 2222345778899988754333333332 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 47999999999999999999999999999999999999999999999875 799999999986 56677999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999986
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=325.99 Aligned_cols=215 Identities=21% Similarity=0.246 Sum_probs=175.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
-+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888887653 246999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++ .|++||+.|...... .....+..++++++++.+++.+ ..+..+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 145 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSA-- 145 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc--
Confidence 87632 123567999999988887 899999988653321 1123334456788999998753 233332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||+|||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 146 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 146 ---LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 46999999999999999999999999999999999999999999999876 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 789999875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=359.05 Aligned_cols=122 Identities=23% Similarity=0.296 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEE
Q 046656 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESGLSTEQRKRLTIAVELVANP---SIIFM 985 (1326)
Q Consensus 910 ~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p---~illL 985 (1326)
+|+.|++.|...+. . .....+.++.++|..+ .++.+ ..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 68899988865332 1 1124678999999763 45554 369999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 986 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 986 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999888999999999975 446799999994 57999999985
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=368.38 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=108.5
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 046656 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESGLSTEQRKRLTIAVELV---ANPS 981 (1326)
Q Consensus 906 ~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~---~~p~ 981 (1326)
.+...||.|+|.++..-......+.++..+.+ ++|+.++|.++ .++.+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44567999999886542222122233344456 58899999876 56654 369999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcEEEEEcCCC
Q 046656 982 IIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPLG 1048 (1326)
Q Consensus 982 illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~G~~~ 1048 (1326)
++||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +||+++..|+.+
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999986 34 8899999995 368999999863
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=319.08 Aligned_cols=232 Identities=24% Similarity=0.326 Sum_probs=189.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC-C-CCceeeEEEECCccCCCCCc-------cceEEEEccC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD-S-SLKVSGRVTYNGHDMNEFVP-------QRTAAYISQH 206 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 206 (1326)
...+++|||+.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.... .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4 33468999999998654432 2579999999
Q ss_pred --CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 207 --DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 207 --d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
..+-|.+||.+.+.-..+.+.... ...+....+.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 567788999988876544321100 0112334567789999998643
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
. +.+.++..|||||||||.||.||+.+|++||.||||++||..++.+|++.|+++.+ ..+++++.|+|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 34578999999999999999999999999999999999999999999999999977 46788888999999999999
Q ss_pred CeEEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhcC
Q 046656 365 DDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVTS 410 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad~l~~~~s 410 (1326)
|||+||..|+||+.|+.+++ |..|.+.-+...+..+..
T Consensus 222 Dri~VMYaG~iVE~g~~~~i--------~~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEI--------FKNPKHPYTRGLLNSLPR 259 (316)
T ss_pred ceEEEEECcEEEEeCCHHHH--------hcCCCChHHHHHHHhCcc
Confidence 99999999999999999988 355666555555544433
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=325.48 Aligned_cols=215 Identities=22% Similarity=0.301 Sum_probs=174.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887663 235999999999999999999999999999999999975421 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.++++++.+++.+ ..++.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 144 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKSA-- 144 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcCC--
Confidence 87642 124567899999988777 8999999986533211 122334556888899988753 234433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.+|++++|+
T Consensus 145 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 145 ---LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred ---CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999854 899999999976 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 788888874
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=326.49 Aligned_cols=209 Identities=19% Similarity=0.335 Sum_probs=172.7
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
++.+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 89 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASI 89 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 33457999999999999999999999999999999999999887 9999999988754332 3569999999988
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.+..+.... . .. .+....++.+++.+||++..+
T Consensus 90 ~~~~tv~enl~~~~~~~~~---~------~~------------------------~~~~~~~~~~l~~~~l~~~~~---- 132 (241)
T PRK10895 90 FRRLSVYDNLMAVLQIRDD---L------SA------------------------EQREDRANELMEEFHIEHLRD---- 132 (241)
T ss_pred cccCcHHHHHhhhhhcccc---c------CH------------------------HHHHHHHHHHHHHcCCHHHhh----
Confidence 8889999999875432110 0 00 001123566788899976554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
..++.|||||||||+||++++.+|++++|||||+|||+.++..+.+.++++.. .+.+++.++|+..++.+++|++++
T Consensus 133 -~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~~~~~~d~v~~ 209 (241)
T PRK10895 133 -SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRETLAVCERAYI 209 (241)
T ss_pred -cchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHHHHHhcCEEEE
Confidence 34567999999999999999999999999999999999999999999998754 345666688888899999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 210 l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 210 VSQGHLIAHGTPTEIL 225 (241)
T ss_pred EeCCeEEeeCCHHHHh
Confidence 9999999999988763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=326.26 Aligned_cols=215 Identities=26% Similarity=0.308 Sum_probs=174.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--CC-eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 885 (1326)
-++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 477889887763 2469999999999999999999999999999999999742 21 2489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.+... ..+++.++|++|+..+++ .|++||+.+....+. .......++.++++++.+++.+ ..+..+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA-- 146 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc--
Confidence 87632 124567999999988777 899999987643321 1122333456788899998753 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 147 ---LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 789998875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=326.16 Aligned_cols=219 Identities=19% Similarity=0.256 Sum_probs=173.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--CC-eeEEEEEEcCc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YISGNITISGY 886 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g~ 886 (1326)
-+++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35677776552 2469999999999999999999999999999999999864 11 35899999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046656 887 PKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961 (1326)
Q Consensus 887 ~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 961 (1326)
++.. ...++.++|++|++.+++. |+.||+.+....+. ........++.++++++.+++.+........ .+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1245679999999888775 99999987643321 1112233445678899999986521111111 1246
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 57788999999986 689
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 988874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=327.44 Aligned_cols=215 Identities=20% Similarity=0.265 Sum_probs=175.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC--C-eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 885 (1326)
-+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478899987663 24699999999999999999999999999999999997642 1 1489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL----RQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~vg~ 956 (1326)
.++.. ...++.+||++|+..+++. |++||+.|...... ....++..+.++++++.+++.+. .+..+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~-- 153 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA-- 153 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc--
Confidence 87632 1335679999999888775 99999987643321 11233344567888999998542 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 154 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 154 ---LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 229 ~-G~i~~~g~~ 238 (259)
T PRK14274 229 M-GELVECNDT 238 (259)
T ss_pred C-CEEEEECCH
Confidence 5 799999875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=326.81 Aligned_cols=216 Identities=22% Similarity=0.294 Sum_probs=177.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-e--eEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-~--~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478889887763 246999999999999999999999999999999999986532 2 489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+....++.++++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87632 224557999999988887 899999987654331 1223333456788899998843 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 246999999999999999999999999999999999999999999999865 699999999987 6788899999998
Q ss_pred c----CcEEEEEcCC
Q 046656 1037 R----GGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~----gg~~~~~G~~ 1047 (1326)
. .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999985
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=312.98 Aligned_cols=190 Identities=49% Similarity=0.843 Sum_probs=161.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC--CCCeeEEEEEEcCc
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYISGNITISGY 886 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~--~~~~~~G~i~i~g~ 886 (1326)
.++++|+++.++... +...+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 578889988774210 001246999999999999999999999999999999999987 5 56899999999
Q ss_pred cCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 887 PKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 887 ~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
+......++.++|++|++.+++.+|++||+.+...+. .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445677999999998888899999997642100 399999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986557788999999986 6887754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=342.31 Aligned_cols=195 Identities=23% Similarity=0.347 Sum_probs=168.9
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-------CccceEEEEccCCCCCCCCC
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-------VPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 214 (1326)
|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999987 99999999886431 12467999999999999999
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+||+.|+.+.. ....++++++.+||++..+. .++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~-----~~~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDR-----YPG 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhC-----Ccc
Confidence 999999853200 01124667899999876664 456
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 79999999999999999999999999999999999999999999998653 35667778999999999999999999999
Q ss_pred EEEEcChhhHH
Q 046656 375 IVYQGPCELVL 385 (1326)
Q Consensus 375 iv~~G~~~~~~ 385 (1326)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999884
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=330.62 Aligned_cols=216 Identities=23% Similarity=0.304 Sum_probs=179.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++.. ..+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47889998876410 12359999999999999999999999999999999999887 4689999999876
Q ss_pred Cc---ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998764321 2233444456889999999988777765 36999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999986 34 46999999996 68888
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=316.95 Aligned_cols=199 Identities=24% Similarity=0.275 Sum_probs=148.8
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
|.-=.++|..||+++++||||-||||+.++|+|..++ .+|. ..+ -.++|=||--.-....||++.+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EED-------LKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Ccc-------ceEeecceeecCCCCCcHHHHHH
Confidence 4444577899999999999999999999999998874 4665 111 13678888765556789999775
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 046656 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 997 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~ 997 (1326)
-...-+.. + .-+..++++-|+|.++.++.+. +|||||.|||+||.+|.++.++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~---~----s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG---S----SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc---c----chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 43221111 1 1234678899999999998874 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC---CCCChhhHHHHHhhcCcc
Q 046656 998 AIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP---LGSNSSDLISYLQLMPMH 1064 (1326)
Q Consensus 998 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~---~~~~~~~~~~~f~~~~~~ 1064 (1326)
..+-+.||+..+. ++|.+++-||.-+ +--..||+++.. |+---+|. +..+-+.+-.|.++++.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l~vT 559 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNLGVT 559 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHcCcE
Confidence 9999999998754 8899999999753 444579999886 33333331 112333455566655544
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.46 Aligned_cols=201 Identities=25% Similarity=0.314 Sum_probs=166.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC--eeEEEEEEcCccCCcccc-cceEEEeecCCC--CCCCCC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YISGNITISGYPKKQETF-TRISGYCEQNDI--HSPLVT 911 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~~T 911 (1326)
+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999987631 158999999988654322 357899999974 556789
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK---PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~---~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 988 (1326)
+.|++.+...... ......++.++++++.+++. +..+..+ ..||||||||++|||+|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 11233345689999999997 3455554 35999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 989 TSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 989 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999986 67778999999985 799988874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.59 Aligned_cols=203 Identities=24% Similarity=0.356 Sum_probs=169.0
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 214 (1326)
+.+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... .+.++|++|++.+++.+|
T Consensus 12 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~t 86 (255)
T PRK11248 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRN 86 (255)
T ss_pred CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCc
Confidence 3456999999999999999999999999999999999999887 99999999887542 345899999988888899
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+||+.++....+.. . .+....++++++.+||++..+. .+.
T Consensus 87 v~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~-----~~~ 127 (255)
T PRK11248 87 VQDNVAFGLQLAGVE----------K------------------------MQRLEIAHQMLKKVGLEGAEKR-----YIW 127 (255)
T ss_pred HHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhC-----Chh
Confidence 999998864322110 0 0011235677899999876554 455
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec--C
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS--D 372 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~ 372 (1326)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.++||+|++|+ +
T Consensus 128 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~ 206 (255)
T PRK11248 128 QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGP 206 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 79999999999999999999999999999999999999999999987543 35566778899999999999999998 5
Q ss_pred CeEEEEcChh
Q 046656 373 GQIVYQGPCE 382 (1326)
Q Consensus 373 G~iv~~G~~~ 382 (1326)
|+++..++.+
T Consensus 207 G~i~~~~~~~ 216 (255)
T PRK11248 207 GRVVERLPLN 216 (255)
T ss_pred cEEEEEecCC
Confidence 9999988754
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=325.73 Aligned_cols=215 Identities=24% Similarity=0.262 Sum_probs=175.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc-
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP- 887 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 887 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478889887763 2469999999999999999999999999999999999876 458999999987
Q ss_pred ----CCcc---c----ccceEEEeecCCC--CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 046656 888 ----KKQE---T----FTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSL 953 (1326)
Q Consensus 888 ----~~~~---~----~~~~~gyv~Q~~~--~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 953 (1326)
+... . .++.++|++|+.. +.+.+|+.||+.+...... .....+..+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 5677899999976432111 1122234456789999999963 55555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhcee
Q 046656 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDEL 1032 (1326)
Q Consensus 954 vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1032 (1326)
+ ..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||++. .+.+.+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4 469999999999999999999999999999999999999999999998764 899999999986 566789999
Q ss_pred eEEecCcEEEEEcCC
Q 046656 1033 FLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1033 ~~l~~gg~~~~~G~~ 1047 (1326)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 799999875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=359.68 Aligned_cols=219 Identities=26% Similarity=0.313 Sum_probs=183.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 378889887763 2469999999999999999999999999999999999876 4589999999876
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhc-cCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046656 889 KQET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRL-RTE---VDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960 (1326)
Q Consensus 889 ~~~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~-~~~---~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 960 (1326)
.... .++.+||++|++.+++.+||+||+.++..... ... .+..+.+++++++++.++|.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 4321 23468999999988899999999987532110 001 1223344568899999999887777764
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
.||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 59999999999999999999999999999999999999999999999878999999999986 57778999999985 78
Q ss_pred EEEEcCCCC
Q 046656 1041 EIYVGPLGS 1049 (1326)
Q Consensus 1041 ~~~~G~~~~ 1049 (1326)
+++.|+..+
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999998754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=323.90 Aligned_cols=214 Identities=23% Similarity=0.325 Sum_probs=174.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcCc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISGY 886 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g~ 886 (1326)
++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888887653 246999999999999999999999999999999999986521 25899999998
Q ss_pred cCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc----ccccccCC
Q 046656 887 PKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL----RQSLVGLP 957 (1326)
Q Consensus 887 ~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~vg~~ 957 (1326)
++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+. .+..+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 144 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPG--- 144 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh---
Confidence 7642 123567999999988877 899999988643221 11223334557888999988642 33333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.+|++++|++
T Consensus 145 --~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~ 220 (250)
T PRK14262 145 --TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR 220 (250)
T ss_pred --hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999865 799999999986 57788999999986
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 221 -G~i~~~g~~ 229 (250)
T PRK14262 221 -GELIEYGPT 229 (250)
T ss_pred -CEEEEecCH
Confidence 688888874
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=314.02 Aligned_cols=180 Identities=46% Similarity=0.781 Sum_probs=155.8
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC---CCCceeeEEEECCccCCCCC--ccceEEEEccCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD---SSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVH 209 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 209 (1326)
.++.+|+|+|+.+++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 35679999999999999999999999999999999999998 55 999999999876432 24679999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.++++.. .
T Consensus 95 ~~~~tv~~~l~~~~~~~--------------------------------------------------------------~ 112 (202)
T cd03233 95 FPTLTVRETLDFALRCK--------------------------------------------------------------G 112 (202)
T ss_pred CCCCcHHHHHhhhhhhc--------------------------------------------------------------c
Confidence 99999999998753210 1
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++....+.++++++||+.+++.+++|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 23445799999999999999999999999999999999999999999999986543456777778888899999999999
Q ss_pred ecCCeEEEEc
Q 046656 370 LSDGQIVYQG 379 (1326)
Q Consensus 370 L~~G~iv~~G 379 (1326)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=363.56 Aligned_cols=209 Identities=26% Similarity=0.381 Sum_probs=176.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||+|+|+. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 6899999998852 12469999999999999999999999999999999999887 4689999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
++ ..+++.+|||+|++.++. .|++||+.++. .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~- 612 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG- 612 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC-
Confidence 43 456889999999998875 59999997641 1222 2346778888877653 34556543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|++||+++ ....+|++++|++
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~- 686 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER- 686 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 357999999999999999999999999999999999999999999986 4899999999985 4577999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 687 G~i~~~G~~ 695 (710)
T TIGR03796 687 GKVVQRGTH 695 (710)
T ss_pred CEEEEecCH
Confidence 799999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.93 Aligned_cols=216 Identities=26% Similarity=0.376 Sum_probs=175.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHD-VHIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 212 (1326)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 45899999999999999999999999999999999999987 9999999998765332 35799999986 36778
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.++.+..+.. . .+....++++++.+||++..++.
T Consensus 97 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~----- 137 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------R------------------------EEMVERVDQALRQVGMEDFLNRE----- 137 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC-----
Confidence 89999999865432110 0 01122357788999998766654
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++.. .+++|++++|+.+++. .||+|++|++
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 138 PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998653 3566666788888776 5999999999
Q ss_pred CeEEEEcChhhHHH---HHHhcCCCCC
Q 046656 373 GQIVYQGPCELVLD---FFESMGFKCP 396 (1326)
Q Consensus 373 G~iv~~G~~~~~~~---~F~~lG~~~p 396 (1326)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999887753 3444455443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=322.89 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=168.3
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
++++++|+|+|+.+++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREI 86 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 34457999999999999999999999999999999999999987 9999999988754322 3569999999988
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-Ccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-LDVCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~v 288 (1326)
++.+||+||+.++....+.. . ....+++++.++ +....+
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~--- 126 (230)
T TIGR03410 87 FPRLTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLG--- 126 (230)
T ss_pred cCCCcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhh---
Confidence 99999999998865322100 0 001233455554 343333
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
..++.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++. .+++++.++|+.+++.+++|+|+
T Consensus 127 --~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~ 203 (230)
T TIGR03410 127 --RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYY 203 (230)
T ss_pred --CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEE
Confidence 445679999999999999999999999999999999999999999999987653 35667778899999999999999
Q ss_pred EecCCeEEEEcChhhH
Q 046656 369 LLSDGQIVYQGPCELV 384 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~ 384 (1326)
+|++|++++.|+.+++
T Consensus 204 ~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 204 VMERGRVVASGAGDEL 219 (230)
T ss_pred EEECCEEEEECCHHHc
Confidence 9999999999998766
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=324.67 Aligned_cols=214 Identities=22% Similarity=0.288 Sum_probs=174.6
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC--eeEEEEEEcC
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YISGNITISG 885 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~--~~~G~i~i~g 885 (1326)
..++++|+++.++ +.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3578899987651 25899999999999999999999999999999999987631 1689999999
Q ss_pred ccCCcccc-cceEEEeecCCC--CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCC
Q 046656 886 YPKKQETF-TRISGYCEQNDI--HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP---LRQSLVGLPGE 959 (1326)
Q Consensus 886 ~~~~~~~~-~~~~gyv~Q~~~--~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~vg~~~~ 959 (1326)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... ..+.++++++.+++.+ ..++.+
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~----- 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLYP----- 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcCC-----
Confidence 87653322 356999999974 4466799999876432211 111 2256889999999976 344443
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999998764 899999999986 56778999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 789998875
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=323.56 Aligned_cols=216 Identities=24% Similarity=0.285 Sum_probs=174.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCe---eEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~---~~G~i~i~g 885 (1326)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467788887653 2469999999999999999999999999999999999875422 379999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ..+++.++|++|++.+++..|+.||+.+...... ....+...+.++++++.+++.+ ..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 146 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPA-- 146 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc--
Confidence 87642 1345679999999998888999999987543221 1122333455677777777642 334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 147 ---TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 799999999986 5777899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 689998875
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=318.25 Aligned_cols=192 Identities=27% Similarity=0.352 Sum_probs=160.3
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
+++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcH
Confidence 45679999999999999999999999999999999999876 468999999976421 1112234567899
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
+||+.+..... ..+....++.++++++.+++.+..++.++ .||||||||++|||+|+.+|++|||||||+||
T Consensus 102 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 102 RENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99998765432 12333444568889999999888777664 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 993 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 174 D~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999998777899999999986 56778999999985 6887754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=334.72 Aligned_cols=213 Identities=20% Similarity=0.233 Sum_probs=176.1
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccCC--
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQHD-- 207 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 207 (1326)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742248999999998865432 14799999997
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+.+.+||.+++.+.....+.. .+ .+....+.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~---------~~------------------------~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGM---------SK------------------------AEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCC---------CH------------------------HHHHHHHHHHHHHcCCCChHHH-
Confidence 6789999999998754332100 00 0112235667889999754332
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
-+..++.|||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 -~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 -MKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred -hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 24678899999999999999999999999999999999999999999999998653 3567778999999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+.+++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999999884
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=319.64 Aligned_cols=195 Identities=26% Similarity=0.378 Sum_probs=163.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDVHI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 210 (1326)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999887 999999998875432 235799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.+.....+... .+....++++++.+||++..++.
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 133 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPP----------------------------------REIRKRVPAALELVGLSHKHRAL--- 133 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCC---
Confidence 99999999998654322100 00112346678889998766644
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++.+ . ++++++++|+.+++.++||++++|
T Consensus 134 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 134 --PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred --hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999754 2 556777889888999999999999
Q ss_pred cCCeE
Q 046656 371 SDGQI 375 (1326)
Q Consensus 371 ~~G~i 375 (1326)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=319.24 Aligned_cols=194 Identities=29% Similarity=0.410 Sum_probs=162.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDVHI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 210 (1326)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 46999999999999999999999999999999999999887 999999999876432 235799999998888
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++....+... ......++++++.+||++..++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~---- 133 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADA---- 133 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhC----
Confidence 89999999998654321100 0011235667889999765554
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++.. . +.+++.++|+.+++.++||++++|
T Consensus 134 -~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 134 -FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred -ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEe
Confidence 3457999999999999999999999999999999999999999999999754 3 456777889999999999999999
Q ss_pred cCCe
Q 046656 371 SDGQ 374 (1326)
Q Consensus 371 ~~G~ 374 (1326)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=316.73 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=172.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+++|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899987653 2469999999999999999999999999999999999876 4589999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.....++.++|++|++.+++.+|++||+.+....+. .. ..+.++++++.++|.+..++.++ .||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 543344568999999888888999999987653321 11 22356789999999887777653 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
|++|||+++.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 6888999999986
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.03 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=166.6
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHIG 211 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 211 (1326)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCC
Confidence 356999999999999999999999999999999999999987 9999999988765432 356999999988898
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc-CCcccccccccC
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL-GLDVCADTLVGD 290 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 290 (1326)
.+||+||+.++.... .. .+ ....++.+++.+ ++.+..+.
T Consensus 94 ~~tv~~~l~~~~~~~---~~----~~-----------------------------~~~~~~~~l~~~~~l~~~~~~---- 133 (237)
T PRK11614 94 RMTVEENLAMGGFFA---ER----DQ-----------------------------FQERIKWVYELFPRLHERRIQ---- 133 (237)
T ss_pred CCcHHHHHHHhhhcc---Ch----hH-----------------------------HHHHHHHHHHHHHHHHHHHhC----
Confidence 899999998853211 00 00 001123344555 35443332
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++.++||++++|
T Consensus 134 -~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 210 (237)
T PRK11614 134 -RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-Q-GMTIFLVEQNANQALKLADRGYVL 210 (237)
T ss_pred -chhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHhhCCEEEEE
Confidence 4557999999999999999999999999999999999999999999998754 3 456666889989999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 211 ENGHVVLEDTGDALL 225 (237)
T ss_pred eCCEEEeeCCHHHHh
Confidence 999999999988773
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=339.88 Aligned_cols=205 Identities=28% Similarity=0.411 Sum_probs=165.9
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCCCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 214 (1326)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+.. .+++++||+|++.++ ..|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf-~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF-AGT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccc-ccc
Confidence 7999999999999999999999999999999999999987 999999999987765 468999999998766 569
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
+||||.++.... + ..++..-.+. ..+.+.+.-+...||.+|+ ..+
T Consensus 411 ireNi~l~~~~~---s----~e~i~~al~~---------------------------a~l~~~v~~p~GLdt~ige-~G~ 455 (559)
T COG4988 411 IRENILLARPDA---S----DEEIIAALDQ---------------------------AGLLEFVPKPDGLDTVIGE-GGA 455 (559)
T ss_pred HHHHhhccCCcC---C----HHHHHHHHHH---------------------------hcHHHhhcCCCcccchhcc-CCC
Confidence 999999964211 0 0011110000 0112222224577899995 577
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
+|||||+|||++|||++.+++++++||||++||.++...|.+.|.++++ + +++++++|.. +...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~-ktvl~itHrl-~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--Q-KTVLVITHRL-EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--C-CeEEEEEcCh-HHHhcCCEEEEecCCc
Confidence 9999999999999999999999999999999999999999999999865 3 4455567765 4556689999999999
Q ss_pred EEEEcChhhHH
Q 046656 375 IVYQGPCELVL 385 (1326)
Q Consensus 375 iv~~G~~~~~~ 385 (1326)
++++|.++++.
T Consensus 532 l~~~g~~~~L~ 542 (559)
T COG4988 532 LVEQGTHEELS 542 (559)
T ss_pred eeccCCHHHHh
Confidence 99999999885
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=324.45 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=170.7
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCC-----CccceEEEEccCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEF-----VPQRTAAYISQHD 207 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 207 (1326)
+...+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP 91 (247)
T ss_pred CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCc
Confidence 3446999999999999999999999999999999999999763 12389999999987542 1235799999998
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc----cc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD----VC 283 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 283 (1326)
.+++ +||+||+.+..+..+... . .+....++.+++.+||. +.
T Consensus 92 ~~~~-~tv~e~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~ 137 (247)
T TIGR00972 92 NPFP-MSIYDNIAYGPRLHGIKD---------K------------------------KELDEIVEESLKKAALWDEVKDR 137 (247)
T ss_pred ccCC-CCHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCcchhhH
Confidence 8888 999999998654322100 0 00112356678899997 44
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
.+ ..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+..++.++
T Consensus 138 ~~-----~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~ 209 (247)
T TIGR00972 138 LH-----DSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARI 209 (247)
T ss_pred hh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHh
Confidence 44 34567999999999999999999999999999999999999999999998754 3 5677788999999999
Q ss_pred CCeEEEecCCeEEEEcChhhHH
Q 046656 364 FDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|+|++|++|+++++|+++++.
T Consensus 210 ~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 210 SDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=370.20 Aligned_cols=209 Identities=24% Similarity=0.399 Sum_probs=175.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||++.+. +++++|+|+|++|+||+++||+|+||||||||+++|+|.. + .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 589999986542 1246999999999999999999999999999999999987 4 489999999887
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
++ ..+++.++||+|++.++. .|++||+.++. .+.++ +.++++++..++.+. .|+.+|..|
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 54 456788999999998876 59999998852 12332 346777777776543 356677644
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.+|+|++|++
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~- 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD- 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-
Confidence 4699999999999999999999999999999999999999999999875 5899999999985 5677999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 799999985
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=326.34 Aligned_cols=195 Identities=21% Similarity=0.289 Sum_probs=165.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHH
Confidence 45899999999999999999999999999999999999987 9999999976543 246799999998888889999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
||+.++... . ....++.+++.+||.+..+. .+..|
T Consensus 100 enl~~~~~~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~~-----~~~~L 134 (257)
T PRK11247 100 DNVGLGLKG-----------Q-----------------------------WRDAALQALAAVGLADRANE-----WPAAL 134 (257)
T ss_pred HHHHhcccc-----------h-----------------------------HHHHHHHHHHHcCChhHhcC-----ChhhC
Confidence 999874210 0 00123567888999866554 45679
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEE
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 376 (1326)
||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++... .+.+|++++|+..++.++||+|++|++|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987553 3456666889988899999999999999999
Q ss_pred EEcChh
Q 046656 377 YQGPCE 382 (1326)
Q Consensus 377 ~~G~~~ 382 (1326)
++|+.+
T Consensus 214 ~~~~~~ 219 (257)
T PRK11247 214 LDLTVD 219 (257)
T ss_pred eecccc
Confidence 988754
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.85 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=171.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC--C---CccceEEEEccCCC-CC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE--F---VPQRTAAYISQHDV-HI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 210 (1326)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 46999999999999999999999999999999999999987 9999999988741 1 12357999999863 34
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
...||+||+.++....+.. . .+....++++++.+||.+..++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~---- 137 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------E------------------------DEVRKRVDNALKRTGIEHLKDK---- 137 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhC----
Confidence 5689999998864322110 0 0111235678899999876654
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.++||+|++|
T Consensus 138 -~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 138 -PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEE
Confidence 45679999999999999999999999999999999999999999999998653 2556777899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|++++.|+++++.
T Consensus 216 ~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 216 KEGRVILQGNPKEVF 230 (283)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=323.19 Aligned_cols=215 Identities=23% Similarity=0.268 Sum_probs=174.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888887653 246999999999999999999999999999999999986532 3589999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 046656 886 YPKKQ----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGLP 957 (1326)
Q Consensus 886 ~~~~~----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~~ 957 (1326)
.++.. ...++.++|++|++.+++ .|+.||+.+...... ........+.+.++++.+++.+ ..+..+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 143 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHA--- 143 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCc---
Confidence 87631 234567999999988887 899999987643221 1112333456778888888753 233332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..||||||||++|||+|+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||++. ++.+.+|++++|++
T Consensus 144 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~ 219 (249)
T PRK14253 144 --FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM 219 (249)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999875 689999999986 57788999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 220 -G~i~~~g~~ 228 (249)
T PRK14253 220 -GELVEHDDT 228 (249)
T ss_pred -CEEEEeCCH
Confidence 799998874
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=299.26 Aligned_cols=230 Identities=23% Similarity=0.371 Sum_probs=192.8
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++.+||++++ +.+.+|+++|+.|++|.+++|+|||||||||||.+++++.+ ..+|+|.++|.++.
T Consensus 2 I~i~nv~K~y-------------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSY-------------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhh-------------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecc
Confidence 3456776655 45789999999999999999999999999999999999876 46999999999874
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
. ..+++.++..-|+......+||+|-+.|+..-.....+. .+.+..++++++.++|.++.|+... +|||||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt-~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQ 140 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLT-KEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQ 140 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCc-hHHHHHHHHHHHHhcccchHHHhHH-----hcccch
Confidence 3 346677888999988888999999999975433333333 3445679999999999999999874 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|||.-||+.++++.+.++||||.++||-..+..+|+.|++++++ |+||+++.||.+. .-.+.|+|+-|++ |+++..|
T Consensus 141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G 218 (252)
T COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQG 218 (252)
T ss_pred hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecC
Confidence 99999999999999999999999999999999999999999876 9999999999874 4456799999996 7999999
Q ss_pred CCCC-ChhhHHHHHhhcC
Q 046656 1046 PLGS-NSSDLISYLQLMP 1062 (1326)
Q Consensus 1046 ~~~~-~~~~~~~~f~~~~ 1062 (1326)
++++ ...+.++-.++++
T Consensus 219 ~~~eii~~~~L~eiydm~ 236 (252)
T COG4604 219 SPDEIIQPEILSEIYDMD 236 (252)
T ss_pred CHHHhcCHHHHHHHhcCC
Confidence 9865 3345555555443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=331.19 Aligned_cols=206 Identities=19% Similarity=0.290 Sum_probs=170.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-------ccceEEEEccCC-C
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-------PQRTAAYISQHD-V 208 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 208 (1326)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 999999999875321 245799999985 2
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-cccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 287 (1326)
.+...||+||+.|+....+.. . .+....++++++.+||+ ...+
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~-- 140 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMN----------L------------------------DEVKNYAHRLLMDLGFSRDVMS-- 140 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhh--
Confidence 333469999999865332110 0 01112356778999996 4555
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++... .+++|++++|+.+++.+++|+|
T Consensus 141 ---~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 141 ---QSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 345679999999999999999999999999999999999999999999998643 4567777899999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999988764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=324.40 Aligned_cols=221 Identities=22% Similarity=0.275 Sum_probs=177.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ...+|+|+||++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478899988763 235999999999999999999999999999999999987632 2479999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 960 (1326)
.++.. ...++.++|++|+..+++ .|+.||+.+....... .+..+..+.+.++++.+++.+..+...+. ...
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 234567999999988887 8999999876432210 12233345678899999985422111111 124
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecC-
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1038 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g- 1038 (1326)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 6999999999999999999999999999999999999999999999865 4899999999986 678899999999964
Q ss_pred ---cEEEEEcCC
Q 046656 1039 ---GQEIYVGPL 1047 (1326)
Q Consensus 1039 ---g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 799999986
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=362.61 Aligned_cols=210 Identities=26% Similarity=0.390 Sum_probs=176.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||+|+|+. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|... +.+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 6899999998841 2359999999999999999999999999999999999887 4689999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
++ ..+++.+|||+|++.+++. |++||+.++. ..+.++ +.++++++..++.+. .|+.+|..
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~----~~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~- 608 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGA----KENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE- 608 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccC----CCCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC-
Confidence 43 4567889999999988764 9999998752 112222 346777777777543 35566653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|++||+++ ..+.+|++++|++
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999985 4899999999985 5678999999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 799999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.57 Aligned_cols=205 Identities=23% Similarity=0.330 Sum_probs=169.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-------ccceEEEEccCCC-
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-------PQRTAAYISQHDV- 208 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 208 (1326)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999997 999999998875321 1356999999852
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-cccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 287 (1326)
.+..+||+||+.|+....+.. . .+....++++++.+||+ ...++
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~- 141 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------E------------------------DEAKEKALKWLKKVGLSEDLISK- 141 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhhC-
Confidence 344689999999865322110 0 01112356788999996 44454
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++.++||+|
T Consensus 142 ----~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 142 ----SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 4557999999999999999999999999999999999999999999998753 3667777899999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=325.34 Aligned_cols=215 Identities=23% Similarity=0.266 Sum_probs=176.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC---CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999998652 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.+... ..+++.++|++|+..+++. |++||+.+...... .......++.++++++.+++.+ ..+..+
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 166 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHENA-- 166 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc--
Confidence 87642 1345679999999888875 99999987643321 1112233456888999998863 233332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|+
T Consensus 167 ---~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 167 ---FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred ---ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999875 799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 242 ~-G~i~~~g~~ 251 (272)
T PRK14236 242 M-GKLVEYGDT 251 (272)
T ss_pred C-CEEEecCCH
Confidence 6 799998875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=325.39 Aligned_cols=208 Identities=22% Similarity=0.309 Sum_probs=172.8
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC----------------ccc
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV----------------PQR 198 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~ 198 (1326)
+.+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRN 87 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhh
Confidence 3456999999999999999999999999999999999999987 999999998775321 145
Q ss_pred eEEEEccCCCCCCCCCHHHHHHhhhhh-ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046656 199 TAAYISQHDVHIGEMTVRETLAFSARC-QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKV 277 (1326)
Q Consensus 199 ~~~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (1326)
.++|++|++.+++..||+||+.++... .+.. . .+....++.+++.
T Consensus 88 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~ 133 (252)
T TIGR03005 88 KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R------------------------AEAEKRAMELLDM 133 (252)
T ss_pred CeEEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHH
Confidence 799999999889999999999875321 1100 0 0011234567889
Q ss_pred cCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 046656 278 LGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPA 357 (1326)
Q Consensus 278 lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 357 (1326)
+|+++..+. .+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++... .+++++.++|+.
T Consensus 134 ~gl~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~ 207 (252)
T TIGR03005 134 VGLADKADH-----MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEM 207 (252)
T ss_pred cCChhHhhc-----ChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCH
Confidence 999766553 45679999999999999999999999999999999999999999999987653 356777788999
Q ss_pred hhHHhhCCeEEEecCCeEEEEcChhhHH
Q 046656 358 PETYDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 358 ~~~~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
+++.+++|++++|++|++++.|+.+++.
T Consensus 208 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 208 GFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999987763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=319.78 Aligned_cols=205 Identities=25% Similarity=0.306 Sum_probs=168.6
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC--CccceEEEEc-cCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF--VPQRTAAYIS-QHDV 208 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~ 208 (1326)
++++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 4455678999999999999999999999999999999999999987 99999999875332 1235799998 5567
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++.+||+|++.+.....+... ++....++.+++.+||++..|+.+
T Consensus 106 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~ 151 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPV 151 (236)
T ss_pred cCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh
Confidence 7789999999988654322100 001123456788899988777654
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. ++.+|+.++|+.+++.+++|+++
T Consensus 152 -----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~ 225 (236)
T cd03267 152 -----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVL 225 (236)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999998653 34566668888888999999999
Q ss_pred EecCCeEEEEc
Q 046656 369 LLSDGQIVYQG 379 (1326)
Q Consensus 369 lL~~G~iv~~G 379 (1326)
+|++|++++.|
T Consensus 226 ~l~~G~i~~~g 236 (236)
T cd03267 226 VIDKGRLLYDG 236 (236)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=322.56 Aligned_cols=213 Identities=23% Similarity=0.333 Sum_probs=172.6
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHI 210 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 210 (1326)
+.+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVF 89 (242)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccC
Confidence 3456999999999999999999999999999999999999887 9999999988754322 24699999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++..... ..+....... ..+....++++++.+|+++..+..
T Consensus 90 ~~~tv~~nl~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~--- 140 (242)
T TIGR03411 90 ENLTVFENLELALPRDK--SVFASLFFRL------------------------SAEEKDRIEEVLETIGLADEADRL--- 140 (242)
T ss_pred CCCCHHHHHHHhhhccc--cccccccccc------------------------HHHHHHHHHHHHHHcCCchhhcCC---
Confidence 99999999998643110 0000000000 001122356788999998766644
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
++.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. + .+|+.++|+.+++.++||+|++|
T Consensus 141 --~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 215 (242)
T TIGR03411 141 --AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVL 215 (242)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999753 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhH
Q 046656 371 SDGQIVYQGPCELV 384 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~ 384 (1326)
++|+++++|+.+++
T Consensus 216 ~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 216 HQGSVLAEGSLDQV 229 (242)
T ss_pred ECCeEEeeCCHHHH
Confidence 99999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=317.22 Aligned_cols=211 Identities=22% Similarity=0.337 Sum_probs=175.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. .+.+.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5677887765310 112579999999999999999999999999999999999876 46899999998763
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. ..++.++|++|++.+++..|+.||+.+...... .....+..+.+.++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999988888999999998654321 1234444567899999999987777665 4699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|++ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999975 4578999999986 453
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=328.41 Aligned_cols=218 Identities=24% Similarity=0.405 Sum_probs=175.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 578889887763 12469999999999999999999999999999999999876 4689999999876
Q ss_pred CcccccceEEEeecCCCCC--CCCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 889 KQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRL-RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~--~~~Tv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
.....++.++|++|++.+. ...+++|++.+...... .........++.++++++.++|.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234689999997653 23478888865321000 0011112234457889999999887777664 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 966 qrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577889999776 4 7999999
Q ss_pred CCC
Q 046656 1046 PLG 1048 (1326)
Q Consensus 1046 ~~~ 1048 (1326)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=333.78 Aligned_cols=213 Identities=20% Similarity=0.233 Sum_probs=173.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC-ceeeEEEECCccCCCCCc-------cceEEEEccCC-
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNEFVP-------QRTAAYISQHD- 207 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 207 (1326)
.++|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987421 138999999998765432 13699999987
Q ss_pred -CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 208 -VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 208 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
.+.|.+||.+++.......... . ..+....++++++.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------~------------------------~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------N------------------------KKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------C------------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 4788999999987654321000 0 0111234567899999975321
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
+-+..++.|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++... .+.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 123567789999999999999999999999999999999999999999999998653 356777799999999999999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=338.89 Aligned_cols=206 Identities=23% Similarity=0.390 Sum_probs=172.4
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-------CccceEEEEcc
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-------VPQRTAAYISQ 205 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q 205 (1326)
+++++. + |+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|
T Consensus 8 ~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 8 RLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEec
Confidence 333344 4 999999999999999999999999999999999987 99999999887432 12467999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
++.+++.+||+||+.|+.+... . . +....++++++.+||++..+
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~--~----------~------------------------~~~~~~~~~l~~~gL~~~~~ 126 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRAR--P----------S------------------------ERRISFERVIELLGIGHLLG 126 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccC--h----------h------------------------HHHHHHHHHHHHcCChhHhc
Confidence 9999999999999998643210 0 0 01123567789999987666
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
. .+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++++.++|+.+++..++|
T Consensus 127 ~-----~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 127 R-----LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCC
Confidence 4 45579999999999999999999999999999999999999999999998653 35567778999999999999
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|++++.|+++++.
T Consensus 201 ~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 201 RVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred EEEEEeCCEEEEECCHHHHh
Confidence 99999999999999988774
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=326.76 Aligned_cols=215 Identities=20% Similarity=0.276 Sum_probs=174.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--C-CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 885 (1326)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578899987763 2459999999999999999999999999999999999743 1 02589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK----PLRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..+..+
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 180 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKNA-- 180 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCCh--
Confidence 87532 1245679999999888774 999999986433211 12223345677888888874 2334333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 181 ---~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 181 ---LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 689999999986 5677899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 799998875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=325.13 Aligned_cols=209 Identities=33% Similarity=0.484 Sum_probs=172.2
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHI 210 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 210 (1326)
++.+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLS 88 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCC
Confidence 33456999999999999999999999999999999999999887 9999999987654322 35689999998887
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++....+. . . .+....++.+++.+||++..++.
T Consensus 89 ~~~tv~e~l~~~~~~~~~-~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 131 (258)
T PRK13548 89 FPFTVEEVVAMGRAPHGL-S---------R------------------------AEDDALVAAALAQVDLAHLAGRD--- 131 (258)
T ss_pred CCCCHHHHHHhhhcccCC-C---------c------------------------HHHHHHHHHHHHHcCCHhHhcCC---
Confidence 889999999885432110 0 0 00112346678899998766654
Q ss_pred ccccCCChhhhHHHHHHHHhh------cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 291 EMVRGISGGQKKRLTTGEMMV------GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+..|||||||||+||++|+ .+|++++|||||+|||+.++..+.+.|+++.+.. +.+|++++|+..++.++|
T Consensus 132 --~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~ 208 (258)
T PRK13548 132 --YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYA 208 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhc
Confidence 4579999999999999999 5999999999999999999999999999986333 456777889998999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|++|++|++++.|+++++.
T Consensus 209 d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 209 DRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999987764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=320.07 Aligned_cols=201 Identities=25% Similarity=0.337 Sum_probs=162.9
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCC--CC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHD--VH 209 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 209 (1326)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 999999999876533 235799999997 45
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 288 (1326)
++.+||+||+.+.....+.... + .......+.+++.+||. ...+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~----------~----------------------~~~~~~~~~~l~~~~l~~~~~~--- 140 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK----------K----------------------EARKEAVLLLLVGVGLPEEVLN--- 140 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH----------H----------------------HHHHHHHHHHHHHCCCChhHhh---
Confidence 6789999999886543211000 0 00011124567888884 3444
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+.+|+.++|+.+++.++||+|+
T Consensus 141 --~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 141 --RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred --CCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEE
Confidence 345679999999999999999999999999999999999999999999998653 24566668888889999999999
Q ss_pred EecCCeEEEEc
Q 046656 369 LLSDGQIVYQG 379 (1326)
Q Consensus 369 lL~~G~iv~~G 379 (1326)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=328.06 Aligned_cols=204 Identities=25% Similarity=0.376 Sum_probs=169.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCC-CCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDV-HIG 211 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~ 211 (1326)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 45999999999999999999999999999999999999987 9999999998754321 357999999864 467
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
..||+||+.|+....+.. + .+....++++++.+||++..++.
T Consensus 92 ~~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~---- 133 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------P------------------------IEIRKRVDRALAEIGLEKYRHRS---- 133 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCC----
Confidence 789999999865432110 0 01112356678899998766654
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
+..|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.. .+++|++++|+..++ ..+|+|++|+
T Consensus 134 -~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 134 -PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999998754 356677788888887 5699999999
Q ss_pred CCeEEEEcChhhHH
Q 046656 372 DGQIVYQGPCELVL 385 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~ 385 (1326)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=325.79 Aligned_cols=215 Identities=21% Similarity=0.264 Sum_probs=174.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--C-CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 885 (1326)
-++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478899988763 2469999999999999999999999999999999999642 1 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++. |++||+.+..... ........++.++++++.+++.+ ..++.+
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 162 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-- 162 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--
Confidence 87642 1245679999999888774 9999998764321 11112223455788888888852 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 163 ---~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 163 ---LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 799998874
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=314.30 Aligned_cols=199 Identities=23% Similarity=0.303 Sum_probs=164.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 45677776552 3469999999999999999999999999999999999877 45899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 890 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 890 ~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
. ..+++.++|++|++.+++.+|+.||+.+...... . ..++.++++++.+++.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999999988888999999988653321 1 12345889999999987777665 36999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+.+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999976 454433566555
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=325.10 Aligned_cols=208 Identities=24% Similarity=0.318 Sum_probs=171.4
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC----------------Cccc
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF----------------VPQR 198 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~ 198 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRT 92 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhh
Confidence 3456999999999999999999999999999999999999887 89999999876421 1135
Q ss_pred eEEEEccCCCCCCCCCHHHHHHhhhh-hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046656 199 TAAYISQHDVHIGEMTVRETLAFSAR-CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKV 277 (1326)
Q Consensus 199 ~~~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (1326)
.++|++|++.+++.+||+||+.++.. ..+.. . .+....++++++.
T Consensus 93 ~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~ 138 (257)
T PRK10619 93 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------QEARERAVKYLAK 138 (257)
T ss_pred ceEEEecCcccCCCCcHHHHHHHHHHHhCCCC----------H------------------------HHHHHHHHHHHHH
Confidence 79999999998999999999987532 11100 0 0011234667899
Q ss_pred cCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 046656 278 LGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPA 357 (1326)
Q Consensus 278 lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 357 (1326)
+||.+... +..+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. .+.+|+.++|+.
T Consensus 139 ~gl~~~~~----~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~g~tiiivsH~~ 212 (257)
T PRK10619 139 VGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEM 212 (257)
T ss_pred cCCChhhh----hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 99976431 234568999999999999999999999999999999999999999999999854 356667788999
Q ss_pred hhHHhhCCeEEEecCCeEEEEcChhhHH
Q 046656 358 PETYDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 358 ~~~~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
.++.++||+|++|++|++++.|+++++.
T Consensus 213 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 213 GFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 9999999999999999999999988763
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=357.66 Aligned_cols=211 Identities=27% Similarity=0.426 Sum_probs=178.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+|+|+. +.+.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 6899999998842 22469999999999999999999999999999999999987 4689999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
++ ..+++.++||+|++.++. .|++||+.++. .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~- 598 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER- 598 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC-
Confidence 54 456788999999998876 59999998742 1222 2346777787777543 35556653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +++|+|++||+++ ..+.+|+|++|++
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~- 674 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN- 674 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 35799999999999999999999999999999999999999999999876 4899999999986 4678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 675 G~i~e~G~~ 683 (694)
T TIGR03375 675 GRIVADGPK 683 (694)
T ss_pred CEEEeeCCH
Confidence 799999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=354.60 Aligned_cols=221 Identities=21% Similarity=0.325 Sum_probs=181.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 46778877653 34699999999999999999999999999999999998764235899999998764
Q ss_pred ccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 046656 890 QET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT-EVDSETRKMFIEEIMELVELKPLR-QSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~vg~~~~~~LS 963 (1326)
... .++.+||++|++.+++.+||.|++.+....+... ....+..+++++++++.+++.+.. +..+ ..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 321 2356899999998889999999998864322111 122333445688999999997654 4444 3599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||||+|||+|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 57778999999986 68899
Q ss_pred EcCCCCC
Q 046656 1044 VGPLGSN 1050 (1326)
Q Consensus 1044 ~G~~~~~ 1050 (1326)
.|+..+.
T Consensus 222 ~~~~~~~ 228 (500)
T TIGR02633 222 TKDMSTM 228 (500)
T ss_pred ecCcccC
Confidence 8887543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=325.20 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=166.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC--ceeeEEEECCccCCCC-----CccceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL--KVSGRVTYNGHDMNEF-----VPQRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 209 (1326)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++..
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 458999999999999999999999999999999999998631 1389999999876421 124579999999877
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc----cccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD----VCAD 285 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 285 (1326)
+ .+||+||+.|+....+.... .+....++.+++.+|+. +..+
T Consensus 100 ~-~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 F-LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred c-cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHh
Confidence 7 48999999986543211000 00112245567777763 2233
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
..++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+.+++.+++|
T Consensus 146 -----~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 146 -----TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE---SYTIIIVTHNMQQAGRISD 217 (254)
T ss_pred -----CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 34567999999999999999999999999999999999999999999999842 3566778899989999999
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|+++.+|+++++.
T Consensus 218 ~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 218 RTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988774
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=322.26 Aligned_cols=215 Identities=25% Similarity=0.278 Sum_probs=175.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478889887663 246999999999999999999999999999999999975421 2489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++. ||+||+.|....+. .......++.+.++++.+++.+ ..++.+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 147 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSA-- 147 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcCh--
Confidence 87642 2335678999999888874 99999998754331 1122333456788899888753 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.+|++++|+
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 148 ---LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999875 689999999986 5677899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 6 789988875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=318.32 Aligned_cols=200 Identities=25% Similarity=0.329 Sum_probs=168.9
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 213 (1326)
++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~ 85 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENL 85 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccC
Confidence 33457999999999999999999999999999999999999887 999999998765322 35799999998888899
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.+.....+.. ...++.+++.+||++..|. .+
T Consensus 86 t~~~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~-----~~ 122 (223)
T TIGR03740 86 TARENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKK-----KA 122 (223)
T ss_pred CHHHHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhh-----hH
Confidence 9999998764322100 0123556888999876654 34
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+.+|+|++|++|
T Consensus 123 ~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~g 200 (223)
T TIGR03740 123 KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQQLADHIGIISEG 200 (223)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999999754 2 456666888888899999999999999
Q ss_pred eEEEEcChh
Q 046656 374 QIVYQGPCE 382 (1326)
Q Consensus 374 ~iv~~G~~~ 382 (1326)
++++.|++.
T Consensus 201 ~i~~~~~~~ 209 (223)
T TIGR03740 201 VLGYQGKIN 209 (223)
T ss_pred EEEEecChh
Confidence 999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=318.48 Aligned_cols=197 Identities=23% Similarity=0.318 Sum_probs=164.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~ 209 (1326)
.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 356999999999999999999999999999999999999887 999999998875432 13579999999888
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.+.....+... ++....++.+++.+||.+..+.
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~--- 133 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKN--- 133 (222)
T ss_pred cccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhC---
Confidence 889999999998654322100 0011124567888998765554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.+..|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .++++++++|+.+++...+|+|++
T Consensus 134 --~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~ 209 (222)
T PRK10908 134 --FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIGLISRRSYRMLT 209 (222)
T ss_pred --CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4567999999999999999999999999999999999999999999998754 256677789999999999999999
Q ss_pred ecCCeEE
Q 046656 370 LSDGQIV 376 (1326)
Q Consensus 370 L~~G~iv 376 (1326)
|++|+++
T Consensus 210 l~~G~i~ 216 (222)
T PRK10908 210 LSDGHLH 216 (222)
T ss_pred EECCEEc
Confidence 9999985
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=324.62 Aligned_cols=210 Identities=20% Similarity=0.283 Sum_probs=167.3
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC--ceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL--KVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 3569999999999999999999999999999999999987410 1389999999886432 12356999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ +||+||+.|+.+..+.. .. +....++++++.+|+.......
T Consensus 104 ~~~-~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~- 147 (258)
T PRK14268 104 PFP-MSIYDNVAYGPRIHGAN----------KK------------------------DLDGVVENALRSAALWDETSDR- 147 (258)
T ss_pred cCc-ccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCCcchhhh-
Confidence 777 89999999865432210 00 0112245678888874211111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
-+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|+.++|+.+++.++||+|+
T Consensus 148 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d~i~ 224 (258)
T PRK14268 148 LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNMQQAARISDYTG 224 (258)
T ss_pred hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHHhCCEEE
Confidence 1244567999999999999999999999999999999999999999999998742 4667778899999999999999
Q ss_pred EecCCeEEEEcChhhH
Q 046656 369 LLSDGQIVYQGPCELV 384 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~ 384 (1326)
+|++|++++.|+++++
T Consensus 225 ~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 225 FFLMGELIEFGQTRQI 240 (258)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998876
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=324.59 Aligned_cols=224 Identities=26% Similarity=0.337 Sum_probs=179.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++... ..+. ..++.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888887763100 0000 013569999999999999999999999999999999999876 46899999998764
Q ss_pred cc------cccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046656 890 QE------TFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGES 960 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 960 (1326)
.. ..++.++|++|+. .+.+..|+.|++.+..... ......+....++++++.+++. ...+..+ .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 31 2356799999997 3567789999987643211 1223344455689999999996 4566554 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.||+|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++. ++.+.+|++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999998765 899999999986 57778999999985 7
Q ss_pred EEEEEcCCC
Q 046656 1040 QEIYVGPLG 1048 (1326)
Q Consensus 1040 ~~~~~G~~~ 1048 (1326)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 999999864
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=326.35 Aligned_cols=207 Identities=26% Similarity=0.340 Sum_probs=169.8
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC--C---CccceEEEEccCCC-
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE--F---VPQRTAAYISQHDV- 208 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~- 208 (1326)
+.+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 12 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 88 (271)
T PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQ 88 (271)
T ss_pred CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhh
Confidence 3456999999999999999999999999999999999999987 9999999988742 1 11356999999864
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
.+...|+.||+.+.....+... .+....++.+++.+||++..++
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~-- 132 (271)
T PRK13638 89 QIFYTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQ-- 132 (271)
T ss_pred ccccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcC--
Confidence 3456789999988643221100 0011234667888999876654
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+++
T Consensus 133 ---~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~ 207 (271)
T PRK13638 133 ---PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVY 207 (271)
T ss_pred ---CchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEE
Confidence 3457999999999999999999999999999999999999999999999764 3 4567778899999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++++.|+++++.
T Consensus 208 ~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 208 VLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=323.11 Aligned_cols=211 Identities=22% Similarity=0.315 Sum_probs=166.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCC-----CccceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 209 (1326)
+.+|+|+|+.+++|++++|+|||||||||||++|+|..+ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 469999999999999999999999999999999999864 1001289999999887531 113579999999887
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++ .||+||+.++....+...+ .+....++.+++.+||.+......
T Consensus 99 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14242 99 FP-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL- 143 (253)
T ss_pred Cc-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 77 5999999986543221000 001122455677788754221111
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|+.++|+..++.+++|+|++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~tH~~~~~~~~~d~v~~ 220 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA---RYTIIIVTHNMQQAARVSDVTAF 220 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCeEEEEEecHHHHHHhCCEEEE
Confidence 345678999999999999999999999999999999999999999999998732 35667788999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|+++..|+++++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 221 FYMGKLIEVGPTEQIF 236 (253)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=321.60 Aligned_cols=215 Identities=25% Similarity=0.327 Sum_probs=174.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC--C-eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 885 (1326)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 477889887763 24699999999999999999999999999999999998642 1 3589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.. ..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 145 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNA-- 145 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccCh--
Confidence 87532 124567999999988776 799999987543221 1122233456788999999852 233332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 146 ---~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 146 ---QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 46999999999999999999999999999999999999999999999854 799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=323.14 Aligned_cols=214 Identities=23% Similarity=0.290 Sum_probs=171.0
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCCC---ccceEEEEccCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHI 210 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~ 210 (1326)
++++|+|+|+.+++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 456999999999999999999999999999999999998741 113899999998875432 235799999998888
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++.+..+.... . .+....++++++.+||.+..+.. -+
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKS--------K------------------------KELQERVRWALEKAQLWDEVKDR-LD 141 (250)
T ss_pred CCCcHHHHHHHHHHhccccCC--------H------------------------HHHHHHHHHHHHHcCCCcchhhh-hc
Confidence 999999999986543211000 0 00112346678888986421111 13
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. +++++.++|+..++.+++|+|++|
T Consensus 142 ~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 142 APAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYVAFL 218 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 45668999999999999999999999999999999999999999999998742 456777889988899999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 219 YKGQIVEWGPTREVF 233 (250)
T ss_pred ECCeEEEECCHHHHH
Confidence 999999999988763
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=331.69 Aligned_cols=207 Identities=18% Similarity=0.206 Sum_probs=174.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCC--C
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHD--V 208 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~ 208 (1326)
..+|+|||+.|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999886 899999999876542 235799999996 5
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc-ccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV-CADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 287 (1326)
+.+.+||.+++.+..+..... .+ .+....++++++.+||+. ..+
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~---------~~------------------------~~~~~~~~~~l~~~gL~~~~~~-- 149 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSL---------SA------------------------AERREKALAMMAKVGLRPEHYD-- 149 (327)
T ss_pred cCCccCHHHHHHHHHHHccCC---------CH------------------------HHHHHHHHHHHHHCCCChHHhc--
Confidence 788999999998754432100 00 011234577899999963 344
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
..++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 150 ---~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 150 ---RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 456789999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998884
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=321.36 Aligned_cols=215 Identities=20% Similarity=0.249 Sum_probs=173.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++|++++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 467888887653 245999999999999999999999999999999999987632 2369999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 144 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHKS--- 144 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhCC---
Confidence 87532 1345679999999988875 999999986543211 112223345777888888753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14249 145 --GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe
Confidence 34699999999999999999999999999999999999999999999985 5899999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14249 221 T-GDLVEYGRT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 788998875
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=367.27 Aligned_cols=211 Identities=29% Similarity=0.432 Sum_probs=178.0
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++|+||+|.++. ++++|+|+|++++|||++||+||||||||||++.|.|... +.+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 35999999999852 3569999999999999999999999999999999999887 468999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-------PLRQSLVGLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~vg~~ 957 (1326)
+++ ..+++.++||+|+..++. -|++||+.++. .+.++ +.++++++..++. +-.|+.+|.
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge- 461 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATD----EEIEEALKLANAHEFIANLPDGYDTIVGE- 461 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhChHHHHHhCcccccceecC-
Confidence 754 457788999999998887 79999999863 12232 2355555555443 346788874
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
++.+||||||||++||||++++|+||+||||||+||+.+...|++.++++. +|+|+|+++|+++ ..+.+|+|++|++
T Consensus 462 ~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999877 5789999999986 3455999999996
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 689999986
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=313.65 Aligned_cols=184 Identities=26% Similarity=0.329 Sum_probs=159.8
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCCH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ--ETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++..|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 469999999999999999999999999999999999876 458999999987532 2345679999999888888999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
+||+.+.... . .+++++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999874311 0 1345789999999988777665 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 993 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
|+.++..+++.|+++.++|+|+|++||++. ++...+|+++.+
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998777999999999986 677788998877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=324.47 Aligned_cols=223 Identities=21% Similarity=0.272 Sum_probs=173.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHI 210 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 210 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (255)
T PRK11300 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLF 92 (255)
T ss_pred CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccC
Confidence 3456999999999999999999999999999999999999987 9999999988754321 23589999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++....... +........ ....+ ...+....++.+++.+||+...+.
T Consensus 93 ~~~tv~enl~~~~~~~~~~---~~~~~~~~~---~~~~~-------------~~~~~~~~~~~~l~~~gl~~~~~~---- 149 (255)
T PRK11300 93 REMTVIENLLVAQHQQLKT---GLFSGLLKT---PAFRR-------------AESEALDRAATWLERVGLLEHANR---- 149 (255)
T ss_pred CCCcHHHHHHHhhhccccc---hhhhhhccc---ccccc-------------chhHHHHHHHHHHHhCChhhhhhC----
Confidence 9999999999864311000 000000000 00000 000112335677889999765554
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.++||++++|
T Consensus 150 -~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l 227 (255)
T PRK11300 150 -QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVV 227 (255)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 45579999999999999999999999999999999999999999999987653 3566777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|++++.|+++++.
T Consensus 228 ~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 228 NQGTPLANGTPEEIR 242 (255)
T ss_pred ECCeEEecCCHHHHh
Confidence 999999999988763
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=318.22 Aligned_cols=210 Identities=23% Similarity=0.366 Sum_probs=170.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478899987763 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSg 964 (1326)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...++.+ ..||+
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 42 124567899999988776 4999999875433211 11 124578899999995 4556554 36999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++ +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998754 899999999986 34 56999999964444454
Q ss_pred EcC
Q 046656 1044 VGP 1046 (1326)
Q Consensus 1044 ~G~ 1046 (1326)
.|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=317.90 Aligned_cols=203 Identities=34% Similarity=0.538 Sum_probs=163.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC---CCCceeeEEEECCccCCCCCccceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD---SSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3579999999999999999999999999999999999998 66 99999999887543345679999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHH-HHHHcCCcccccccccCc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDY-YLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~ 291 (1326)
+||+||+.|+....+..... ... .....+. .++.+++++..+ .
T Consensus 96 ~tv~enl~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~l~~~~l~~~~~-----~ 139 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSS---DAI----------------------------RKKRVEDVLLRDLALTRIGG-----N 139 (226)
T ss_pred CcHHHHHHHHHHhhcccccc---hHH----------------------------HHHHHHHHHHHhhcchhhhc-----c
Confidence 99999999875432211000 000 0011233 677888876554 4
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCh-hhHHhhCCeEEEe
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPA-PETYDLFDDIILL 370 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~-~~~~~~~D~vilL 370 (1326)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++.+ .+ .+++.++|.. .++.++||++++|
T Consensus 140 ~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~-~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RN-RIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCCCHHHHHhCCEEEEE
Confidence 4567999999999999999999999999999999999999999999998754 34 4555566665 6899999999999
Q ss_pred cCCeEEEEc
Q 046656 371 SDGQIVYQG 379 (1326)
Q Consensus 371 ~~G~iv~~G 379 (1326)
++|+++++|
T Consensus 218 ~~G~i~~~g 226 (226)
T cd03234 218 SSGEIVYSG 226 (226)
T ss_pred eCCEEEecC
Confidence 999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=324.35 Aligned_cols=219 Identities=23% Similarity=0.289 Sum_probs=177.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578899988763 356999999999999999999999999999999999986531 3689999999
Q ss_pred ccCCc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046656 886 YPKKQ----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961 (1326)
Q Consensus 886 ~~~~~----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 961 (1326)
.++.. ...++.++|++|++.+++ .|++||+.+..... ...+.++..+.+.++++.+++.+..+.... .....
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 134567899999988887 79999998764322 112333444557788999998643211111 11346
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57788999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999875
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=324.49 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=168.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCC-CCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDV-HIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 212 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 45899999999999999999999999999999999999987 999999999875432 2457999999963 5778
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.++....+.. . .+....++++++.+||++..++.
T Consensus 99 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 139 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------P------------------------KKMKDIIDDLAKKVGMEDYLDKE----- 139 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCC-----
Confidence 99999998864321110 0 01112356788999998766654
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
++.||||||||++||+||+.+|++++|||||+|||+.++..+++.|+++... +++++++++|+.+++. .+|+|++|++
T Consensus 140 ~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 140 PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998653 3356666777777774 7999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=315.85 Aligned_cols=194 Identities=29% Similarity=0.425 Sum_probs=160.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCC-CCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDV-HIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 212 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 57999999999999999999999999999999999999987 999999998875432 1357999999864 4678
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.++....+.. . .+....++++++.+||++..+. .
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-----~ 131 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------E------------------------EEIEERVEEALELVGLEGLRDR-----S 131 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCcHhhhcC-----C
Confidence 99999998864322110 0 0011234667888999765554 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++.. +++|+.++|+.+++..+||+|++|++
T Consensus 132 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 5579999999999999999999999999999999999999999999998652 56677789999999999999999999
Q ss_pred Ce
Q 046656 373 GQ 374 (1326)
Q Consensus 373 G~ 374 (1326)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=327.17 Aligned_cols=206 Identities=24% Similarity=0.331 Sum_probs=171.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCC-CCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDV-HIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 212 (1326)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 35999999999999999999999999999999999999987 9999999988754221 356899999863 3456
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.++....+... .+....++++++.+||.+..++.
T Consensus 94 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 134 (277)
T PRK13652 94 PTVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRV----- 134 (277)
T ss_pred ccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCC-----
Confidence 899999987654321100 01112356789999998766654
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
++.||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++... .+++|+.++|+.+++.+.||+|++|++
T Consensus 135 ~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~ 213 (277)
T PRK13652 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDK 213 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998653 356677789999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (277)
T PRK13652 214 GRIVAYGTVEEIF 226 (277)
T ss_pred CeEEEECCHHHHh
Confidence 9999999998874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=354.93 Aligned_cols=212 Identities=22% Similarity=0.324 Sum_probs=181.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899988763 2469999999999999999999999999999999999876 4589999999876
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.... .++.+||++|++.+++.+||+|++.|... . ....++.++++++.++|.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSAG-----SLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCChh-----hCCH
Confidence 4311 12458999999999999999999987531 0 12234568899999999887777764 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999986 789999
Q ss_pred cCCCC
Q 046656 1045 GPLGS 1049 (1326)
Q Consensus 1045 G~~~~ 1049 (1326)
|+..+
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 98754
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=321.42 Aligned_cols=219 Identities=18% Similarity=0.217 Sum_probs=176.1
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITIS 884 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~ 884 (1326)
..+..+++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 356666666554 2357999999999999999999999999999999999987531 258999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 046656 885 GYPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE 959 (1326)
Q Consensus 885 g~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~ 959 (1326)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+.++++++.+++.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987632 13456799999998777 5899999988754331 1 122345688999999986432222111 23
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe---
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK--- 1036 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~--- 1036 (1326)
..||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 4699999999999999999999999999999999999999999999985 4799999999986 5778899999997
Q ss_pred ----cCcEEEEEcCC
Q 046656 1037 ----RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ----~gg~~~~~G~~ 1047 (1326)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 46899999985
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=317.62 Aligned_cols=196 Identities=23% Similarity=0.351 Sum_probs=160.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 209 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999987 9999999988754322 1469999999888
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.+........ .. +....++++++.+||++..+.
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~--- 137 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VK------------------------EAKERAYEMLEKVGLEHRINH--- 137 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhC---
Confidence 88999999999864321110 00 011224567889999765554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++. .+|+|++
T Consensus 138 --~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 138 --RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred --ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEEEE
Confidence 445799999999999999999999999999999999999999999999886533 455666788877775 4799999
Q ss_pred ecCCeEE
Q 046656 370 LSDGQIV 376 (1326)
Q Consensus 370 L~~G~iv 376 (1326)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=324.86 Aligned_cols=209 Identities=25% Similarity=0.395 Sum_probs=161.6
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ 890 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 890 (1326)
+++|+++.++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 46777765531 12459999999999999999999999999999999999876 458999999987532
Q ss_pred ---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCC
Q 046656 891 ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRK-----MFIEEIMELV--ELKPLRQSLVGLPGES 960 (1326)
Q Consensus 891 ---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~vg~~~~~ 960 (1326)
..+++.++|++|++.+++ .||.||+.+... ........ ...+++++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 234567999999987764 699999987421 11111100 0112333333 333333332 24
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++ +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 6999999999999999999999999999999999999999999999864 899999999986 44 56999999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9998874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=316.47 Aligned_cols=205 Identities=26% Similarity=0.402 Sum_probs=163.0
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCC-
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHI- 210 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~- 210 (1326)
.+++.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+.
T Consensus 7 ~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~ 81 (213)
T cd03235 7 VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDR 81 (213)
T ss_pred eEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEecccccccc
Confidence 3334457999999999999999999999999999999999999987 9999999987642 346799999987653
Q ss_pred -CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 211 -GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 211 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
+.+||+||+.++..... ..+.... .+....++.+++.+||++..++
T Consensus 82 ~~~~tv~e~l~~~~~~~~--~~~~~~~----------------------------~~~~~~~~~~l~~~~l~~~~~~--- 128 (213)
T cd03235 82 DFPISVRDVVLMGLYGHK--GLFRRLS----------------------------KADKAKVDEALERVGLSELADR--- 128 (213)
T ss_pred CCCCcHHHHHHhcccccc--ccccCCC----------------------------HHHHHHHHHHHHHcCCHHHHhC---
Confidence 34899999988543210 0000000 0011235677889999865554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+++++.++|+.+++.+++|+|++
T Consensus 129 --~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 129 --QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred --CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEE
Confidence 3457999999999999999999999999999999999999999999999865 356677789999999999999999
Q ss_pred ecCCeEEEEc
Q 046656 370 LSDGQIVYQG 379 (1326)
Q Consensus 370 L~~G~iv~~G 379 (1326)
|++| +++.|
T Consensus 205 l~~~-~~~~g 213 (213)
T cd03235 205 LNRT-VVASG 213 (213)
T ss_pred EcCc-EeecC
Confidence 9886 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=319.88 Aligned_cols=215 Identities=24% Similarity=0.316 Sum_probs=172.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--CC-eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~-~~~G~i~i~g 885 (1326)
-+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 367888887663 2469999999999999999999999999999999999753 21 2489999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~-- 146 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHESA-- 146 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcCc--
Confidence 87632 134567999999988887 6999999886433211 112222345677888887642 233332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 147 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 147 ---LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 589999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=317.19 Aligned_cols=208 Identities=26% Similarity=0.338 Sum_probs=173.6
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEccCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~l 213 (1326)
+.+++|+|+|+.++||++++|+||||||||||+++|+|.++|+ +|+|.++|.++.+.. .++.++|++|++..++.+
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHL 87 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCC
Confidence 3457999999999999999999999999999999999999987 899999998876432 246799999999888899
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
|++||+.+.....+... ......++.+++.+||++..++. +
T Consensus 88 t~~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 128 (232)
T cd03300 88 TVFENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRK-----P 128 (232)
T ss_pred cHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----h
Confidence 99999988654321100 00112346778899998766643 4
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+||++++.+|++++|||||+|||+.++..+.+.++++... .+.+|+.++|...++.+++|++++|++|
T Consensus 129 ~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~~~~~~~~d~i~~l~~G 207 (232)
T cd03300 129 SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQEEALTMSDRIAVMNKG 207 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 579999999999999999999999999999999999999999999998653 2456666788888899999999999999
Q ss_pred eEEEEcChhhHH
Q 046656 374 QIVYQGPCELVL 385 (1326)
Q Consensus 374 ~iv~~G~~~~~~ 385 (1326)
++++.|+.+++.
T Consensus 208 ~~~~~~~~~~~~ 219 (232)
T cd03300 208 KIQQIGTPEEIY 219 (232)
T ss_pred EEEecCCHHHHH
Confidence 999999887663
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=324.84 Aligned_cols=213 Identities=24% Similarity=0.296 Sum_probs=173.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC---CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 885 (1326)
.++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 578899987763 24699999999999999999999999999999999998642 13589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|+..+++. |+.||+.+....+. ... ...+.++++++.+++.+ ..+..+
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~-- 178 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSG-- 178 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCc--
Confidence 87532 2345679999999887775 99999987654321 122 23456889999999853 334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee-EE
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF-LM 1035 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~-~l 1035 (1326)
..||||||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.+|+++ +|
T Consensus 179 ---~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 179 ---LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 46999999999999999999999999999999999999999999999976 489999999986 5677899976 45
Q ss_pred ecCcEEEEEcCC
Q 046656 1036 KRGGQEIYVGPL 1047 (1326)
Q Consensus 1036 ~~gg~~~~~G~~ 1047 (1326)
+ .|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 4789988874
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=301.30 Aligned_cols=216 Identities=22% Similarity=0.334 Sum_probs=191.3
Q ss_pred hhcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCC
Q 046656 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHD 207 (1326)
Q Consensus 128 ~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d 207 (1326)
..++++.+++++++|+|+.++||+|.+++|||||||||.+++|+|.++|+ +|+|+++|.+++... +.+|||.|.+-
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEER 81 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEER 81 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhh
Confidence 34567778899999999999999999999999999999999999999998 999999999886542 45799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
-+++.+||.|.|.|-|+++|... ++.....+.+|+.+++.....
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~-- 125 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKT-- 125 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhcccccccc--
Confidence 99999999999999999988632 123344678899999887665
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
+.+..||-|.+|++.+-.+++.+|++++||||+|||||..+..+-+.++++.. .|++|+..+|.+..+.++||++
T Consensus 126 ---~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 126 ---KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred ---chHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhh
Confidence 44667999999999999999999999999999999999999999999999854 4777888899999999999999
Q ss_pred EEecCCeEEEEcChhhHHHHH
Q 046656 368 ILLSDGQIVYQGPCELVLDFF 388 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~~~F 388 (1326)
++|++|+.|.+|+.++++..|
T Consensus 201 lmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 201 LMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred heecCCceEEeccHHHHHHhc
Confidence 999999999999999998754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=353.19 Aligned_cols=216 Identities=27% Similarity=0.327 Sum_probs=180.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 377888887763 2469999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
... .+++.+||++|++.+++.+||.||+.+..........+..+.++.++++++.++|.+..+..++ .|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCH
Confidence 421 2346799999999888999999999885321111112233445678899999999877666653 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||||++|||+|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||++. ++...||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999986 688776
Q ss_pred cC
Q 046656 1045 GP 1046 (1326)
Q Consensus 1045 G~ 1046 (1326)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 65
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=325.98 Aligned_cols=211 Identities=20% Similarity=0.296 Sum_probs=173.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +...+|+|+|++|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3678999887741 12359999999999999999999999999999999999875 379999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGL------PGE 959 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~------~~~ 959 (1326)
.. ...++.++|++|++.+++ .|++||+.... ... ++.++++++.++|.+..+...+. .+.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234667999999998887 49999995321 111 23467888999998766554421 134
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
..||+|||||++|||||+.+|+||+|||||++||+.+...+++.|++.. .++|||+++|+++ .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999985 34 45999999985 7
Q ss_pred EEEEEcCCC
Q 046656 1040 QEIYVGPLG 1048 (1326)
Q Consensus 1040 ~~~~~G~~~ 1048 (1326)
++++.|++.
T Consensus 213 ~i~~~g~~~ 221 (275)
T cd03289 213 KVRQYDSIQ 221 (275)
T ss_pred eEeecCCHH
Confidence 999999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=324.07 Aligned_cols=205 Identities=26% Similarity=0.360 Sum_probs=169.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC--C---ccceEEEEccCCC-CC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF--V---PQRTAAYISQHDV-HI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~ 210 (1326)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... . .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 45999999999999999999999999999999999999987 99999999887421 1 1357999999852 34
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
...||+||+.++....+.. + .+....+.++++.+||++..++.
T Consensus 92 ~~~tv~e~i~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~--- 134 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLS----------K------------------------EEVEKRVKEALKAVGMEGFENKP--- 134 (275)
T ss_pred ccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchhhcCC---
Confidence 4679999998753221100 0 00112356678999998766654
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.++||++++|
T Consensus 135 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 135 --PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999864 2 566777899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998874
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=321.57 Aligned_cols=205 Identities=23% Similarity=0.312 Sum_probs=169.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC------C---CccceEEEEccC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE------F---VPQRTAAYISQH 206 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~ 206 (1326)
.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|+
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecC
Confidence 346999999999999999999999999999999999999887 9999999987631 0 113579999999
Q ss_pred CCCCCCCCHHHHHHhhh-hhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 207 DVHIGEMTVRETLAFSA-RCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
+.+++.+||+||+.+.. ...+.. . .+....++.+++.+||+...+
T Consensus 91 ~~~~~~~tv~e~i~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~ 136 (242)
T PRK11124 91 YNLWPHLTVQQNLIEAPCRVLGLS----------K------------------------DQALARAEKLLERLRLKPYAD 136 (242)
T ss_pred ccccCCCcHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhh
Confidence 98999999999997532 111110 0 001123567788999986665
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
. .+..|||||||||+||++++.+|++++|||||+|||+.++..+.+.++++.. .+++++.++|+..++.+++|
T Consensus 137 ~-----~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 137 R-----FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTAS 209 (242)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcC
Confidence 4 4457999999999999999999999999999999999999999999998753 35667778899889999999
Q ss_pred eEEEecCCeEEEEcChhhH
Q 046656 366 DIILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~ 384 (1326)
++++|++|+++++|+++++
T Consensus 210 ~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 210 RVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEEECCEEEEeCCHHHh
Confidence 9999999999999988754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=331.55 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=169.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCC-----CccceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 209 (1326)
.++|+|+|+.|++|++++|+|||||||||||++|+|+.++. ...+|+|.++|.++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 45899999999999999999999999999999999998631 01389999999988532 235679999999887
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
+ +.||+||+.|+....+... ++ .....++.+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~~----------~~-----------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIND----------RK-----------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCCh----------HH-----------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 7 5899999998653321100 00 001123455677777544445554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.+..|||||||||+||||++.+|+||+|||||+|||+.+...+.+.|+++.+ +.++++++|....+.+.||+|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEE
Confidence 45678999999999999999999999999999999999999999999998743 36677789999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999884
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=334.31 Aligned_cols=228 Identities=25% Similarity=0.378 Sum_probs=195.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++.+|++.+++ ..++|+||||++++||++||+|.||||||||+|+|+|..+ +.+|+|.++|.+.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 577888887763 4579999999999999999999999999999999999887 5699999999876
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 889 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL-RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 889 ~~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
... ....-++.|.|+..+.|++||.||+.++...+. ..-++.+...+...++|+.+++....++.++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 422 234568999999999999999999988765544 2345667777789999999999644777775 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
.||||.|.|||||..+++||+||||||.|+......+.+.+++++++|.+||++||.++ ++++.|||+.+|.+ |+++-
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999997 68888
Q ss_pred EcC-CCCC-hhhHHHHH
Q 046656 1044 VGP-LGSN-SSDLISYL 1058 (1326)
Q Consensus 1044 ~G~-~~~~-~~~~~~~f 1058 (1326)
.++ .++. .+++++..
T Consensus 226 ~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 226 TRPTAAETSEDELVRLM 242 (500)
T ss_pred ecccccCCCHHHHHHHh
Confidence 888 3443 34555543
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.11 Aligned_cols=220 Identities=23% Similarity=0.280 Sum_probs=175.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478888887663 2469999999999999999999999999999999999731124689999999876
Q ss_pred Ccc---cccc-eEEEeecCCCCCCCCCHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046656 889 KQE---TFTR-ISGYCEQNDIHSPLVTVYESLLYSAWLRLR----TEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGE 959 (1326)
Q Consensus 889 ~~~---~~~~-~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 959 (1326)
... ..++ .++|++|++.+++.+|+.|++.+....... .+....+..+.+.++++.+++. ...++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 1222 478999999999999999998775332110 1112223345678899999997 35555442
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHH-hceeeEEecC
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1038 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~g 1038 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 249999999999999999999999999999999999999999999998877999999999976 34444 799999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 799999986
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=320.22 Aligned_cols=202 Identities=23% Similarity=0.362 Sum_probs=167.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 212 (1326)
.+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 346999999999999999999999999999999999999987 999999998875432 2457999999987776
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccccCc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLVGDE 291 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~ 291 (1326)
.||+||+.++....+ . ....++.+++.+||+ +..+ .
T Consensus 91 ~tv~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~-----~ 127 (241)
T PRK14250 91 GTVKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYAT-----R 127 (241)
T ss_pred hhHHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhh-----C
Confidence 699999987532110 0 001235568888996 3344 3
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+.+++.++||+|++|+
T Consensus 128 ~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~~~~~~~d~i~~l~ 206 (241)
T PRK14250 128 DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNMEQAKRIGDYTAFLN 206 (241)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHHhCCEEEEEe
Confidence 45679999999999999999999999999999999999999999999987653 24567778999999999999999999
Q ss_pred CCeEEEEcChhhHH
Q 046656 372 DGQIVYQGPCELVL 385 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~ 385 (1326)
+|+++..|+++++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (241)
T PRK14250 207 KGILVEYAKTYDFF 220 (241)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988763
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=355.37 Aligned_cols=212 Identities=26% Similarity=0.397 Sum_probs=176.8
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++||+|.|+. +.+.+|+|+|++|+|||++||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 36899999998742 22459999999999999999999999999999999999887 458999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~ 957 (1326)
+++ ..+++.++||+|++.+++ .|++||+.++. .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 754 356788999999988776 59999997632 1222 2346677777776543 35556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|++||+++ ..+.+|++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 45799999999999999999999999999999999999999999999885 5899999999986 4567999999986
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 799999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=323.45 Aligned_cols=215 Identities=21% Similarity=0.224 Sum_probs=172.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--C-CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 885 (1326)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 478999988763 2359999999999999999999999999999999999764 1 13689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK----PLRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~vg~ 956 (1326)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.++++.+++. +..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-- 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA-- 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc--
Confidence 87632 134567999999988777 499999988643221 112222234567777777543 2233332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 166 ---~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 166 ---YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999865 799999999986 5677899999998
Q ss_pred cCcEEEEEcCC
Q 046656 1037 RGGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~gg~~~~~G~~ 1047 (1326)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 6 789998874
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=323.71 Aligned_cols=205 Identities=22% Similarity=0.297 Sum_probs=168.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCC-CCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDV-HIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 212 (1326)
+.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 35899999999999999999999999999999999999987 999999998875432 2357999999974 6788
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.|+++|+.|.....+... .+....++.+++.+|+.+..+. .
T Consensus 99 ~~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~-----~ 139 (269)
T PRK13648 99 SIVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADY-----E 139 (269)
T ss_pred ccHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhC-----C
Confidence 899999988654321100 0011234667899999876654 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
++.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+..++.. +|+|++|++
T Consensus 140 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~~~-~d~i~~l~~ 217 (269)
T PRK13648 140 PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAME-ADHVIVMNK 217 (269)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHHhc-CCEEEEEEC
Confidence 5679999999999999999999999999999999999999999999987542 34566667888777765 999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|++++.|+++++.
T Consensus 218 G~i~~~g~~~~~~ 230 (269)
T PRK13648 218 GTVYKEGTPTEIF 230 (269)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=324.96 Aligned_cols=205 Identities=22% Similarity=0.312 Sum_probs=167.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-------ccceEEEEccCCC-
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-------PQRTAAYISQHDV- 208 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 208 (1326)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999987 999999998875421 1356999999852
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc-ccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV-CADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 287 (1326)
.+...||+||+.|.....+.. . .+....++.+++.+||.. ..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~-- 140 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------Q------------------------EEAEALAREKLALVGISESLFE-- 140 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhh--
Confidence 333579999998864322110 0 001123466788899963 334
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
..++.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|++
T Consensus 141 ---~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 141 ---KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEE
Confidence 34567999999999999999999999999999999999999999999998854 3 556777889888999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=326.03 Aligned_cols=205 Identities=25% Similarity=0.344 Sum_probs=169.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC----ccceEEEEccCCC-CCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV----PQRTAAYISQHDV-HIG 211 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 211 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 999999998875421 2467999999863 344
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
..||.|++.|+....+... .+....++++++.+||+...++.
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~---- 141 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHA---- 141 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCC----
Confidence 5799999998754322100 01122356789999998776654
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.. +|++++|+
T Consensus 142 -~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 142 -PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEE
Confidence 4579999999999999999999999999999999999999999999998653 35566667888888765 99999999
Q ss_pred CCeEEEEcChhhHH
Q 046656 372 DGQIVYQGPCELVL 385 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~ 385 (1326)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.08 Aligned_cols=215 Identities=20% Similarity=0.236 Sum_probs=174.3
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITIS 884 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~ 884 (1326)
..+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3588999988763 246999999999999999999999999999999999976421 248999999
Q ss_pred CccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 046656 885 GYPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK----PLRQSLVG 955 (1326)
Q Consensus 885 g~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~vg 955 (1326)
|.++.. ..+++.++|++|+..+++. |+.||+.+....+. ... ..++.++++++.+++. +..+..+
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~- 159 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEKG- 159 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCCc-
Confidence 987632 2345679999999887764 99999987643221 111 2234467788888874 2233332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 956 ~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|
T Consensus 160 ----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 160 ----TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ----ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999865 799999999986 677889999999
Q ss_pred e--------cCcEEEEEcCC
Q 046656 1036 K--------RGGQEIYVGPL 1047 (1326)
Q Consensus 1036 ~--------~gg~~~~~G~~ 1047 (1326)
+ +.|++++.|+.
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred ecccccccccCceEEEeCCH
Confidence 7 25899999986
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=321.68 Aligned_cols=214 Identities=21% Similarity=0.300 Sum_probs=170.0
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCC--CC---CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMN--EF---VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~--~~---~~~~~~~yv~Q~d~ 208 (1326)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++. .. ..++.++|++|++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 356999999999999999999999999999999999998762 113899999998875 21 12357999999998
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++.+||+||+.++....+.... . .+....++++++.+||.......
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~- 142 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKS--------K------------------------KELDERVEWALKKAALWDEVKDR- 142 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCC--------H------------------------HHHHHHHHHHHHHcCCccchhhh-
Confidence 89999999999986542211000 0 00111245667888874321111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
-+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .++++++|+.+++..+||+|+
T Consensus 143 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~ 219 (253)
T PRK14267 143 LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVA 219 (253)
T ss_pred hccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEE
Confidence 1345668999999999999999999999999999999999999999999999753 3 567778899989999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=313.38 Aligned_cols=195 Identities=24% Similarity=0.345 Sum_probs=163.0
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHH
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999988754332 357999999998899999999998
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
++..... .. .+ +....++++++.+||++..++. +..|||||
T Consensus 93 ~~~~~~~-~~--------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KL--------TA-------------------------EDRQAIEVALARVGLAGLEKRL-----PGELSGGE 133 (211)
T ss_pred ccccccc-Cc--------cH-------------------------HHHHHHHHHHHHcCCHHHHhCC-----cccCCHHH
Confidence 7542110 00 00 0112356778999998766643 45799999
Q ss_pred hHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEc
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 379 (1326)
|||++||++++.+|++++|||||+|||+.++..+.+.|+++... .+.+|+.++|+..++.++||++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999988643 3556666899999999999999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=319.58 Aligned_cols=217 Identities=25% Similarity=0.316 Sum_probs=170.6
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc--CCCCceeeEEEECCccCCCCCc----cceEEEEccC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL--DSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQH 206 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~ 206 (1326)
+++.+++|+|+|+.+++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|++|+
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 85 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQY 85 (243)
T ss_pred EECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecc
Confidence 334457999999999999999999999999999999999995 565 8999999988754322 2348999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc-ccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV-CAD 285 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~d 285 (1326)
+.+++.+|++|++.+............ .. ...+....++.+++.+||+. ..+
T Consensus 86 ~~~~~~~t~~~~~~~~~~~~~~~~~~~---~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~ 138 (243)
T TIGR01978 86 PEEIPGVSNLEFLRSALNARRSARGEE---PL------------------------DLLDFLKLLKAKLALLGMDEEFLN 138 (243)
T ss_pred ccccCCcCHHHHHHHHHHHhhcccccc---cc------------------------cHHHHHHHHHHHHHHcCCchhhcc
Confidence 999999999999988643211000000 00 00011223567889999973 444
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-C
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL-F 364 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~ 364 (1326)
..++ ..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.+|+.++|+.+++... +
T Consensus 139 ~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~ 212 (243)
T TIGR01978 139 RSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKP 212 (243)
T ss_pred cccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcC
Confidence 3322 24999999999999999999999999999999999999999999999854 345667788888888888 8
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|++++|++|++++.|+++++.
T Consensus 213 d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 213 DYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred CeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999987653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=322.58 Aligned_cols=207 Identities=25% Similarity=0.333 Sum_probs=170.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCC--
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHD-- 207 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 207 (1326)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999987 9999999988764321 35699999985
Q ss_pred CCCCCCCHHHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-cccc
Q 046656 208 VHIGEMTVRETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCAD 285 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~d 285 (1326)
.+.+.+||+||+.+..... +.. . .+....++++++.+||+ ...+
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~ 145 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLD----------E------------------------SEQKARIAELLDMVGLRSEDAD 145 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhh
Confidence 4567899999998754311 000 0 00112356678999995 4444
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
. .++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++... .+++|+.++|+...+.+++|
T Consensus 146 ~-----~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 146 K-----LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhc
Confidence 3 45679999999999999999999999999999999999999999999998653 35667778999999999999
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
++++|++|++++.|+.+++.
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 220 RVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEEeCCEEEEECCHHHHc
Confidence 99999999999999998774
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=320.49 Aligned_cols=212 Identities=18% Similarity=0.261 Sum_probs=168.4
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc---cCCCCceeeEEEECCccCCCCC-----ccceEEEEccC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ---LDSSLKVSGRVTYNGHDMNEFV-----PQRTAAYISQH 206 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~---~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 206 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|. .++. ..+|+|.++|.++.... .++.++|++|+
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 92 (250)
T PRK14245 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQR 92 (250)
T ss_pred CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecC
Confidence 345699999999999999999999999999999999997 3331 13899999998875421 23569999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
+.+++ .||+||+.++.+..+.... ......++++++.+||.+...+
T Consensus 93 ~~~~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~ 138 (250)
T PRK14245 93 PNPFP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKD 138 (250)
T ss_pred CccCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhh
Confidence 88776 6999999886543211000 0011234667888888643222
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.. +..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|+.++|+..++.++||+
T Consensus 139 ~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiivtH~~~~~~~~~d~ 214 (250)
T PRK14245 139 KL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--K-DYTIVIVTHNMQQAARVSDK 214 (250)
T ss_pred hh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhCCE
Confidence 11 24566899999999999999999999999999999999999999999999973 2 35667788999899999999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|++|++++.|+++++.
T Consensus 215 v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 215 TAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998874
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=316.33 Aligned_cols=207 Identities=23% Similarity=0.292 Sum_probs=168.4
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCC----CCceeeEEEECCccCCCCCcc-ceEEEEccCCC--CCC
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS----SLKVSGRVTYNGHDMNEFVPQ-RTAAYISQHDV--HIG 211 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~--~~~ 211 (1326)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++.....+ +.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 89999999887544322 57999999974 556
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
.+|++|++.+.....+.. . .+....++++++.+||++.. ...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCchH--HHHhC
Confidence 789999998754321110 0 00112356788999997421 11234
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+.+++..++|+|++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 56679999999999999999999999999999999999999999999987652 35667778899999999999999999
Q ss_pred CCeEEEEcChhhHH
Q 046656 372 DGQIVYQGPCELVL 385 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~ 385 (1326)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.36 Aligned_cols=215 Identities=25% Similarity=0.275 Sum_probs=172.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc-
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP- 887 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~- 887 (1326)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 367888887663 2358999999999999999999999999999999999876 458999999976
Q ss_pred ----CCccc-------ccceEEEeecCCC--CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 046656 888 ----KKQET-------FTRISGYCEQNDI--HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSL 953 (1326)
Q Consensus 888 ----~~~~~-------~~~~~gyv~Q~~~--~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~ 953 (1326)
+.... .++.++|++|++. ..+..|+.|++.+..... . ........+.++++++.+++. ...++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 32211 1346899999874 345678999987542211 1 111123345688999999996 355655
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhcee
Q 046656 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDEL 1032 (1326)
Q Consensus 954 vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1032 (1326)
+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4 469999999999999999999999999999999999999999999998654 899999999986 566789999
Q ss_pred eEEecCcEEEEEcCC
Q 046656 1033 FLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1033 ~~l~~gg~~~~~G~~ 1047 (1326)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 799998874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=323.68 Aligned_cols=212 Identities=23% Similarity=0.361 Sum_probs=173.4
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHI 210 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 210 (1326)
++.+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 93 (265)
T PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTP 93 (265)
T ss_pred ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCC
Confidence 34457999999999999999999999999999999999999887 9999999988754322 35699999999888
Q ss_pred CCCCHHHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 211 GEMTVRETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
+.+||+||+.++..-. ...... + ......++.+++.+||++..++
T Consensus 94 ~~~tv~~~~~~~~~~~~~~~~~~----------------~---------------~~~~~~~~~~l~~~~l~~~~~~--- 139 (265)
T PRK10253 94 GDITVQELVARGRYPHQPLFTRW----------------R---------------KEDEEAVTKAMQATGITHLADQ--- 139 (265)
T ss_pred CCCcHHHHHHhCcccccccccCC----------------C---------------HHHHHHHHHHHHHcCCHHHhcC---
Confidence 8999999998753110 000000 0 0011235677889999865554
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.++.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.+++|+|++
T Consensus 140 --~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~ 216 (265)
T PRK10253 140 --SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIA 216 (265)
T ss_pred --CcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 45679999999999999999999999999999999999999999999998653 355677788999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 217 l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 217 LREGKIVAQGAPKEIV 232 (265)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=351.83 Aligned_cols=207 Identities=26% Similarity=0.322 Sum_probs=174.7
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCCCCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE----TFTRISGYCEQNDIHSPLV 910 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~~ 910 (1326)
+.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+..+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 569999999999999999999999999999999999876 4589999999876421 2345689999998888899
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
||+||+.+..........+..+..+.++++++.+++.+..++.++ .|||||||||+|||+|+.+|++|||||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 999999875321111111233334568899999999877777654 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCC
Q 046656 991 GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSN 1050 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~ 1050 (1326)
|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..+.
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhhC
Confidence 99999999999999999878999999999986 57788999999986 799999987543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=319.96 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=169.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCC-----CccceEEEEccCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHD 207 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 207 (1326)
+.+.+|+|+|+.|++||+++|+|||||||||||++|+|.++ |....+|+|.++|.++... ..++.++|++|+.
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14256 15 GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94 (252)
T ss_pred CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCC
Confidence 34569999999999999999999999999999999999985 3111389999999887432 1245799999998
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+++.+||+||+.++.+..+... . .+....++++++.+|+.......
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~ 141 (252)
T PRK14256 95 NPFPAMSIYDNVIAGYKLNGRVN---------R------------------------SEADEIVESSLKRVALWDEVKDR 141 (252)
T ss_pred CCCCcCcHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 88999999999987643221000 0 00112345678888885421111
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
. +..+..|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. + ++|+.++|+.+++.++||++
T Consensus 142 ~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i 217 (252)
T PRK14256 142 L-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYT 217 (252)
T ss_pred h-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEE
Confidence 1 234667999999999999999999999999999999999999999999999853 3 56677889999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|+++..|+.+++.
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 218 AFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=316.66 Aligned_cols=202 Identities=25% Similarity=0.324 Sum_probs=166.1
Q ss_pred ecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHH
Q 046656 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETL 219 (1326)
Q Consensus 140 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 219 (1326)
|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999987 9999999988765332 348999999889999999999
Q ss_pred HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChh
Q 046656 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG 299 (1326)
Q Consensus 220 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 299 (1326)
.++....... . .. .+....++++++.+||++..++. +..||||
T Consensus 76 ~~~~~~~~~~--~------~~------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--L------SK------------------------SERRAIVEEHIALVGLTEAADKR-----PGQLSGG 118 (230)
T ss_pred HHHHHhcccC--C------CH------------------------HHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHH
Confidence 8853210000 0 00 00112346678899998766644 4579999
Q ss_pred hhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEc
Q 046656 300 QKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379 (1326)
Q Consensus 300 qkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 379 (1326)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+.+|+.++|+.+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999987653 3456677889999999999999999999999988
Q ss_pred ChhhH
Q 046656 380 PCELV 384 (1326)
Q Consensus 380 ~~~~~ 384 (1326)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 76543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=308.05 Aligned_cols=178 Identities=26% Similarity=0.329 Sum_probs=150.8
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-----ccccceEEEeecCCC-CCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-----ETFTRISGYCEQNDI-HSP 908 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~~ 908 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 469999999999999999999999999999999999876 458999999987631 123567899999973 233
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 988 (1326)
..|++||+.+..... ..+..+..+.++++++.++|.+..++.++ .||||||||++|||||+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998864322 22334444568899999999887777653 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 989 TSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 989 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
|+|||+.++..+.+.|+++.++|+|||++||++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=323.16 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=167.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCC-----CccceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 209 (1326)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 46999999999999999999999999999999999998741 01389999999887531 124579999999887
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++. ||+||+.|+....+.... + .+....++++++.+||.+......
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CCC-cHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 774 999999986543221000 0 001123466788888864211111
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+++.+++|++++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEEEE
Confidence 245668999999999999999999999999999999999999999999998743 3 5667788998899999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|+++.+|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 235 FHLGNLVEVGDTEKMF 250 (267)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=323.51 Aligned_cols=211 Identities=24% Similarity=0.332 Sum_probs=171.4
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEG 99 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCC
Confidence 356999999999999999999999999999999999999887 9999999987653322 3569999999888889
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||.||+.++.... .. .... .+ ......++.+++.+||++..++.
T Consensus 100 ~tv~e~l~~~~~~~-~~-~~~~-------------~~---------------~~~~~~~~~~l~~~~l~~~~~~~----- 144 (265)
T PRK10575 100 MTVRELVAIGRYPW-HG-ALGR-------------FG---------------AADREKVEEAISLVGLKPLAHRL----- 144 (265)
T ss_pred ccHHHHHHhCcccc-cc-cccC-------------CC---------------HHHHHHHHHHHHHcCCHHHhcCC-----
Confidence 99999998753210 00 0000 00 00112356778899997655544
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++.. .+++|+.++|+.+++.+++|+|++|++
T Consensus 145 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i~~~~d~i~~l~~ 223 (265)
T PRK10575 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMAARYCDYLVALRG 223 (265)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998653 245667788999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|+++..|+.+++.
T Consensus 224 G~i~~~~~~~~~~ 236 (265)
T PRK10575 224 GEMIAQGTPAELM 236 (265)
T ss_pred CeEEEecCHHHhc
Confidence 9999999987663
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=319.89 Aligned_cols=212 Identities=20% Similarity=0.313 Sum_probs=166.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 3469999999999999999999999999999999999853 4212389999999887421 12457999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ +||+||+.++....+.... ......++.+++.+|+.....+.
T Consensus 97 ~~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~- 141 (252)
T PRK14239 97 PFP-MSIYENVVYGLRLKGIKDK---------------------------------QVLDEAVEKSLKGASIWDEVKDR- 141 (252)
T ss_pred cCc-CcHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhHHHH-
Confidence 776 8999999986543221000 00112235567777764321111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
-+..+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++.+.||+|+
T Consensus 142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~ 218 (252)
T PRK14239 142 LHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTG 218 (252)
T ss_pred HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEE
Confidence 1345668999999999999999999999999999999999999999999998743 3 567778899889999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++++.|+.+++.
T Consensus 219 ~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 219 FFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998773
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=323.64 Aligned_cols=218 Identities=23% Similarity=0.318 Sum_probs=173.0
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--------ccceEEEEccC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--------PQRTAAYISQH 206 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~ 206 (1326)
+.+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 3456999999999999999999999999999999999999875223699999998764321 13468999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
+.+++.+||+||+.++..... . . ..... ... ..+....++.+++.+||++..|.
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~--~-~------~~~~~--~~~---------------~~~~~~~~~~~l~~~~l~~~~~~ 148 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGST--P-F------WRTCF--SWF---------------TREQKQRALQALTRVGMVHFAHQ 148 (262)
T ss_pred cccccCCcHHHHHHhhhcccc--c-c------hhhhc--ccc---------------cHHHHHHHHHHHHHcCCHHHHhC
Confidence 888999999999987542100 0 0 00000 000 00112345678999999876664
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+..|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++. ++++|+.++|+.+++.+++|+
T Consensus 149 -----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 149 -----RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred -----CccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 44579999999999999999999999999999999999999999999998653 356777788999899999999
Q ss_pred EEEecCCeEEEEcChhhH
Q 046656 367 IILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~ 384 (1326)
|++|++|++++.|+++++
T Consensus 223 i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 223 IVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=334.67 Aligned_cols=212 Identities=25% Similarity=0.362 Sum_probs=179.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||+++|+.+ ..++|+|+|+++++||.+||+|+||||||||++.|+|... +.+|+|.++|.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999998643 3469999999999999999999999999999999999876 5699999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~ 958 (1326)
.. ..+++.+++++|...++. -|+++||.... .+.+ ++.++++++.+||.++... .+|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 335678899999876654 59999998642 2222 3458899999999876443 4554 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+..||||||||++|||+|++|.++++|||||.|||+.+.++|++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999998765 899999999975 4688999999985
Q ss_pred cEEEEEcCCC
Q 046656 1039 GQEIYVGPLG 1048 (1326)
Q Consensus 1039 g~~~~~G~~~ 1048 (1326)
|+++..|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 7999999864
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=302.27 Aligned_cols=157 Identities=29% Similarity=0.444 Sum_probs=141.9
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCCH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ--ETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++..|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 359999999999999999999999999999999999876 458999999987643 2345679999999988888899
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
.||+. ||||||||++|||+|+.+|++|+|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99863 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 993 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
|+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|++|
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999877899999999986 577789999999875
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.11 Aligned_cols=211 Identities=20% Similarity=0.308 Sum_probs=167.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCCC-----ccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEFV-----PQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 208 (1326)
.+.+|+|+|+.+++||+++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 456999999999999999999999999999999999998651 113899999998875321 2456999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc-cccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC-ADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~ 287 (1326)
+++ +|++||+.|.....+.... .+....++.+++.+||... .+ .
T Consensus 96 ~~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~-~ 140 (251)
T PRK14270 96 PFP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKD-D 140 (251)
T ss_pred cCC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhh-H
Confidence 776 8999999986543221000 0011224556778877421 11 1
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
-+..+..|||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++.. + .+++.++|+..++.++||+|
T Consensus 141 -~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v 216 (251)
T PRK14270 141 -LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYT 216 (251)
T ss_pred -hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEE
Confidence 1245668999999999999999999999999999999999999999999998754 3 56666888888999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+.+++.
T Consensus 217 ~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 217 AFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999998874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.85 Aligned_cols=214 Identities=21% Similarity=0.259 Sum_probs=173.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC--C-eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~--~-~~~G~i~i~g 885 (1326)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899987763 24699999999999999999999999999999999997542 1 2589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGL 956 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~ 956 (1326)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+ ..+..
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 148 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS--- 148 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC---
Confidence 87531 234567999999988777 499999988653221 11 122345677788888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 957 ~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
...||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 149 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 149 --GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 246999999999999999999999999999999999999999999999875 589999999986 6888999999998
Q ss_pred c--------CcEEEEEcCC
Q 046656 1037 R--------GGQEIYVGPL 1047 (1326)
Q Consensus 1037 ~--------gg~~~~~G~~ 1047 (1326)
+ .|+++..|+.
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 4799999875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=322.15 Aligned_cols=212 Identities=25% Similarity=0.375 Sum_probs=172.0
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHI 210 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~ 210 (1326)
++++++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|+..++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (255)
T PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTP 88 (255)
T ss_pred ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCC
Confidence 33457999999999999999999999999999999999999887 999999998765432 135699999998888
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.++..-.. ..+... + .+....++++++.+||++..++.
T Consensus 89 ~~~tv~~~i~~~~~~~~--~~~~~~-------------~---------------~~~~~~~~~~l~~~~l~~~~~~~--- 135 (255)
T PRK11231 89 EGITVRELVAYGRSPWL--SLWGRL-------------S---------------AEDNARVNQAMEQTRINHLADRR--- 135 (255)
T ss_pred CCccHHHHHHhccchhh--hhccCC-------------C---------------HHHHHHHHHHHHHcCCHHHHcCC---
Confidence 88999999988532000 000000 0 00112346678889998766644
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+..|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. .+++++.++|+.+++.+++|++++|
T Consensus 136 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~--~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 136 --LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999998754 2556777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|+++..|+.+++.
T Consensus 212 ~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 212 ANGHVMAQGTPEEVM 226 (255)
T ss_pred ECCeEEEEcCHHHhc
Confidence 999999999987763
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=318.41 Aligned_cols=197 Identities=25% Similarity=0.365 Sum_probs=168.1
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
+|+|+||++++||+++|+|+||||||||+++|+|..+ .+|+|.++|.++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999864 38999999987643 12345689999998888889999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVA-------NPSIIFMD 986 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~-------~p~illLD 986 (1326)
||+.+.... ..+.....+.++++++.++|.+..++.++ .||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 11223334568899999999877776653 599999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999986 57788999999985 799998875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=315.40 Aligned_cols=204 Identities=26% Similarity=0.433 Sum_probs=171.3
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
+|+|+|++++|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999987 9999999988765322 457999999998899999999
Q ss_pred HHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCC
Q 046656 218 TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297 (1326)
Q Consensus 218 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 297 (1326)
|+.++....+... .+....++++++.+||.+..++. ++.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRK-----PETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 9988643221100 00111245678889998766654 45799
Q ss_pred hhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEE
Q 046656 298 GGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVY 377 (1326)
Q Consensus 298 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 377 (1326)
|||||||+||+|++.+|++++|||||+|||+.++..+.+.|++++... +++++.++|..+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986532 4566668888889999999999999999999
Q ss_pred EcChhhHH
Q 046656 378 QGPCELVL 385 (1326)
Q Consensus 378 ~G~~~~~~ 385 (1326)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=361.45 Aligned_cols=207 Identities=27% Similarity=0.390 Sum_probs=165.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|++++||+.++|+||||||||||+++|+|++ |+ +|+|.+||.++.+... ++.++||+|++.+| +.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF-~~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLP-HG 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCC-Cc
Confidence 56999999999999999999999999999999999999 76 8999999999877654 46899999998866 56
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
|++|||.++... . . . .++ .+++...+ .+..++ .|++..||.||+. .
T Consensus 438 TI~eNI~~g~~~--~-~-~---eei------------------~~al~~a~------l~~~i~--~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGNPD--A-S-D---EQL------------------QQALENAW------VSEFLP--LLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCCCC--C-C-H---HHH------------------HHHHHHhC------HHHHHH--hcccccccccccC-C
Confidence 999999986310 0 0 0 011 11110000 111222 3677889999975 5
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..||||||||++||||++++|+|++||||||+||+.++..|.+.|+++. .++|+ +.++|.. +....||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~Tv-IiItHrl-~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTT-LMVTHQL-EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEE-EEEecCh-HHHHhCCEEEEEeCC
Confidence 6799999999999999999999999999999999999999999998863 23454 4466665 456779999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
+++++|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998863
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.91 Aligned_cols=208 Identities=24% Similarity=0.321 Sum_probs=169.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCC-CCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDV-HIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 212 (1326)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999886212399999999875432 2357999999964 6778
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.|..+..+.. . .+....++.+++.+||++..+. .
T Consensus 100 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~-----~ 140 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------R------------------------PEMIKIVRDVLADVGMLDYIDS-----E 140 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------H------------------------HHHHHHHHHHHHHCCChhHhcC-----C
Confidence 99999998864322110 0 0112235677899999876554 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+.+++ ..||++++|++
T Consensus 141 ~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999988653 355666678888777 57999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=314.77 Aligned_cols=198 Identities=21% Similarity=0.350 Sum_probs=163.3
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN 86 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccc
Confidence 33456999999999999999999999999999999999999887 99999999877421 12357999999998
Q ss_pred CCCCCCHHHHHHhhhh-hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 209 HIGEMTVRETLAFSAR-CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
+++.+||+||+.++.. .++.. . .+....++.+++.+||++..+.
T Consensus 87 ~~~~~t~~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~- 131 (213)
T cd03262 87 LFPHLTVLENITLAPIKVKGMS----------K------------------------AEAEERALELLEKVGLADKADA- 131 (213)
T ss_pred cCCCCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhh-
Confidence 8889999999988642 11100 0 0011234567888999876554
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.+..|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. . +++++.++|+..++.+++|+|
T Consensus 132 ----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~d~i 205 (213)
T cd03262 132 ----YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVADRV 205 (213)
T ss_pred ----CccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEE
Confidence 4567999999999999999999999999999999999999999999999865 3 456666889999999999999
Q ss_pred EEecCCeE
Q 046656 368 ILLSDGQI 375 (1326)
Q Consensus 368 ilL~~G~i 375 (1326)
++|++|++
T Consensus 206 ~~l~~g~i 213 (213)
T cd03262 206 IFMDDGRI 213 (213)
T ss_pred EEEeCCcC
Confidence 99999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=311.11 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=164.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56778776652 2469999999999999999999999999999999999876 45899999998753
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 046656 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqr 969 (1326)
....++.++|++|++.+++..|+.||+.+....+. .. .+.++++++.++|.+..+..++ .||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPFG-----YLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCChh-----hcCHHHHHH
Confidence 22245678999999888888999999987543221 11 2347899999999877666653 599999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 970 l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
++|||+|+.+|++|||||||+|||+.+...+++.|++++++|+|||++||++. ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998777999999999975 343 3 8887775
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=362.41 Aligned_cols=209 Identities=22% Similarity=0.365 Sum_probs=178.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|++|.++. ++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 340 ~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEh
Confidence 5899999998741 2359999999999999999999999999999999999987 4589999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~ 958 (1326)
++ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~- 473 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ- 473 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 53 4567889999999998875 9999998752 122 23478888888876543 4555553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++.+ ++|+|++||+++ ....+|+|++|++
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~- 549 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR- 549 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999998764 799999999984 5677999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 550 G~i~~~G~~ 558 (592)
T PRK10790 550 GQAVEQGTH 558 (592)
T ss_pred CEEEEEcCH
Confidence 799999985
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=361.53 Aligned_cols=212 Identities=23% Similarity=0.335 Sum_probs=178.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||+|.++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEh
Confidence 6999999998842 12469999999999999999999999999999999999887 4689999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
++ ..+++.++||+|++.+++ -|++||+.++. +...+ ++.++++++.+++.+. .|+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~- 477 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN- 477 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC-
Confidence 53 346788999999998886 69999998742 11122 2346778888776543 45666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.||+|++|++
T Consensus 478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~- 553 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999875 4799999999985 5678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 554 g~i~e~g~~ 562 (582)
T PRK11176 554 GEIVERGTH 562 (582)
T ss_pred CEEEEeCCH
Confidence 799999985
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=314.51 Aligned_cols=197 Identities=28% Similarity=0.358 Sum_probs=162.1
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQHDVHI 210 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 210 (1326)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5899999999999999999999999999999999999887 9999999988765322 24699999998888
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.+.....+... .+....++.+++.+||.+..+..
T Consensus 101 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~--- 143 (228)
T PRK10584 101 PTLNALENVELPALLRGESS----------------------------------RQSRNGAKALLEQLGLGKRLDHL--- 143 (228)
T ss_pred CCcCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCC---
Confidence 99999999988643221100 00112356778999998766543
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|+..++ +.+|++++|
T Consensus 144 --~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 144 --PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEE
Confidence 45799999999999999999999999999999999999999999999986533 45566678887776 559999999
Q ss_pred cCCeEEEE
Q 046656 371 SDGQIVYQ 378 (1326)
Q Consensus 371 ~~G~iv~~ 378 (1326)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=317.82 Aligned_cols=215 Identities=20% Similarity=0.273 Sum_probs=169.7
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHI 210 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~ 210 (1326)
++.+.+|+|+|+++++||+++|+||||||||||+++|+|.++|....+|+|.++|+++.+.. .++.++|++|++.++
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 34457999999999999999999999999999999999997531123899999999876432 235799999998877
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+ .||+||+.++...++.... . ......++.+++.+||........ +
T Consensus 92 ~-~tv~eni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 137 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMIKN--------K------------------------DEEEALVVDCLQKVGLFEEVKDKL-K 137 (246)
T ss_pred c-ccHHHHhhhHHhhcCcccC--------h------------------------HHHHHHHHHHHHHcCCChhhhHHh-c
Confidence 6 6999999986443211000 0 001122456788888853211111 3
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+.++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++++++++|+.+++.+++|+|++|
T Consensus 138 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEE
Confidence 45678999999999999999999999999999999999999999999998742 456777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 215 HLGELIEFGESKEFF 229 (246)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988763
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=320.55 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=168.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCC-----CccceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 209 (1326)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 46999999999999999999999999999999999998641 12389999999887532 124579999999887
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++ .||+||+.++.+..+... + .+....++++++.+||....+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------K------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 76 699999998643221100 0 001123456688888864322222
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..++.||||||||++|||+++.+|++++|||||+|||+.++..+.+.|+++.. +.+|+.++|+.+++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK---NYTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhcCEEEE
Confidence 356778999999999999999999999999999999999999999999998742 35677788888899999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998773
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=315.90 Aligned_cols=194 Identities=20% Similarity=0.272 Sum_probs=165.3
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
..+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|. +++++|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcH
Confidence 44679999999999999999999999999999999999876 45899999984 3566777767778999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
.||+.+..... ..+.+...+.++++++.+++.+..+..+ ..||+|||||++||++|+.+|++|||||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754332 2233444556788899999988777665 369999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 993 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
|+.++..+++.|+++.+.|+|||++||++. ++.+.+|++++|++ |+++..|+..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999998777999999999976 56778999999985 7899998864
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.33 Aligned_cols=214 Identities=22% Similarity=0.331 Sum_probs=169.0
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC--ceeeEEEECCccCCCC-----CccceEEEEccCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL--KVSGRVTYNGHDMNEF-----VPQRTAAYISQHD 207 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 207 (1326)
+.+++|+|+|+.+++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++
T Consensus 15 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 34569999999999999999999999999999999999986410 1389999999876421 1235799999998
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+++.+||+||+.++....+... + .+....++.+++.+||.......
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~ 141 (258)
T PRK14241 95 NPFPTMSIRDNVVAGLKLNGVRN---------K------------------------KDLDELVEKSLRGANLWNEVKDR 141 (258)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhhH
Confidence 88999999999988654321100 0 00112345678888874211111
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
. +..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+..++.+++|+|
T Consensus 142 ~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~i 217 (258)
T PRK14241 142 L-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQT 217 (258)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCEE
Confidence 1 245668999999999999999999999999999999999999999999998743 3 56777889999999999999
Q ss_pred EEec------CCeEEEEcChhhHH
Q 046656 368 ILLS------DGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~------~G~iv~~G~~~~~~ 385 (1326)
++|+ +|++++.|+++++.
T Consensus 218 ~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 218 AFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEecccCCCCceEEecCCHHHHH
Confidence 9996 79999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=315.30 Aligned_cols=208 Identities=25% Similarity=0.384 Sum_probs=172.7
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 213 (1326)
..+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 11 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (237)
T TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87 (237)
T ss_pred CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCC
Confidence 3457999999999999999999999999999999999999887 9999999988764333 35799999999888899
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
|++||+.+.....+... . .....++++++.+++....+. .+
T Consensus 88 t~~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~-----~~ 128 (237)
T TIGR00968 88 TVRDNIAFGLEIRKHPK----------A------------------------KIKARVEELLELVQLEGLGDR-----YP 128 (237)
T ss_pred cHHHHHHhHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhC-----Ch
Confidence 99999988654321100 0 001124567888898765554 44
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
+.||||||||++||++++.+|++++|||||+|||..++..+.+.|++.+. ..+.+++.++|...++.+++|+|++|++|
T Consensus 129 ~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNG 207 (237)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998754 22456666788888899999999999999
Q ss_pred eEEEEcChhhHH
Q 046656 374 QIVYQGPCELVL 385 (1326)
Q Consensus 374 ~iv~~G~~~~~~ 385 (1326)
++++.|+.+++.
T Consensus 208 ~i~~~~~~~~~~ 219 (237)
T TIGR00968 208 KIEQIGSPDEVY 219 (237)
T ss_pred EEEEecCHHHHH
Confidence 999999988764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=317.32 Aligned_cols=219 Identities=22% Similarity=0.280 Sum_probs=174.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--C-CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~-~~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888887653 2469999999999999999999999999999999999753 1 12589999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 960 (1326)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+...+++.++++.+++.+........ ...
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87642 1345679999999888875 99999987643221 112233445688899999885421111111 134
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
.||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999864 899999999986 67888999999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9999875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=320.34 Aligned_cols=209 Identities=27% Similarity=0.393 Sum_probs=171.2
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIG 211 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 211 (1326)
+++.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAV 88 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCC
Confidence 3457999999999999999999999999999999999999987 9999999988765322 346899999987788
Q ss_pred CCCHHHHHHhhhh-hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 212 EMTVRETLAFSAR-CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 212 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
.+||+||+.++.. .... + .. +. .+....++++++.+||.+..++
T Consensus 89 ~~tv~e~l~~~~~~~~~~---~-------------~~-~~--------------~~~~~~~~~~l~~~~l~~~~~~---- 133 (256)
T TIGR03873 89 PLTVRDVVALGRIPHRSL---W-------------AG-DS--------------PHDAAVVDRALARTELSHLADR---- 133 (256)
T ss_pred CCCHHHHHHhcchhhhhh---c-------------cC-CC--------------HHHHHHHHHHHHHcCcHhhhcC----
Confidence 8999999988521 0000 0 00 00 0011234667888999765554
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++.++||+|++|
T Consensus 134 -~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 134 -DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVL 210 (256)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4457999999999999999999999999999999999999999999998753 3566777889999999999999999
Q ss_pred cCCeEEEEcChhhH
Q 046656 371 SDGQIVYQGPCELV 384 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~ 384 (1326)
++|+++..|+.+++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 211 DGGRVVAAGPPREV 224 (256)
T ss_pred eCCCEEEecCHHHh
Confidence 99999999998776
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=317.46 Aligned_cols=216 Identities=23% Similarity=0.291 Sum_probs=173.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC----eeEEEEEEc
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YISGNITIS 884 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~----~~~G~i~i~ 884 (1326)
.+.++++++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|...+. ...|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 477888887663 356999999999999999999999999999999999986532 122555555
Q ss_pred CccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 046656 885 GYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP----LRQSLVGLP 957 (1326)
Q Consensus 885 g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~vg~~ 957 (1326)
|.+... ...++.++|++|++.+++.+|++||+.+..... .....++..+.++++++.+++.+ ..+..+
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 151 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA--- 151 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhhhcCCc---
Confidence 555421 234567999999999888899999998864322 11123344456889999999964 333332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|++
T Consensus 152 --~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 152 --SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 699999999986 56688999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 799998875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=349.96 Aligned_cols=123 Identities=22% Similarity=0.262 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCcEEE
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESGLSTEQRKRLTIAVELVA---NPSIIF 984 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~---~p~ill 984 (1326)
.+||.|.+.|...+. . .....++|+.++|... .++.+ ..|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 356777776654321 0 1124578888998753 44444 3699999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 985 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 985 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
|||||+|||+.....+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 346799999994 57999999985
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=320.06 Aligned_cols=212 Identities=18% Similarity=0.294 Sum_probs=167.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+++|+|+|+++++||+++|+|||||||||||++|+|.++ |....+|+|.++|.++... ..++.++|++|++.
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 3569999999999999999999999999999999999986 3212389999999887421 12357999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++. ||+||+.|..+..+... + .+....++.+++.+|+.+......
T Consensus 104 ~~~~-tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~l 149 (259)
T PRK14274 104 PFPQ-SIFDNVAYGPRIHGTKN---------K------------------------KKLQEIVEKSLKDVALWDEVKDRL 149 (259)
T ss_pred cccc-CHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhhhh
Confidence 8875 99999988643321100 0 001122455677888753211111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. +.+++.++|+.+++.+++|+++
T Consensus 150 -~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~ 225 (259)
T PRK14274 150 -HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTA 225 (259)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEE
Confidence 245668999999999999999999999999999999999999999999998742 3566668888889999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++.+|+++++.
T Consensus 226 ~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 226 FFYMGELVECNDTNKMF 242 (259)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998763
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=316.27 Aligned_cols=209 Identities=26% Similarity=0.398 Sum_probs=167.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++. ..+.+|+|+|++|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 567777765521 12459999999999999999999999999999999999876 45899999998753
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG------LPGES 960 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg------~~~~~ 960 (1326)
. ...++.++|++|++.+++ .|+.|++.+... ... .+.+.++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223457899999988776 699999976421 111 2235678888888776665431 01234
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||++. . .+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-Ce
Confidence 79999999999999999999999999999999999999999999998764 89999999986 3 478999999986 67
Q ss_pred EEEEc
Q 046656 1041 EIYVG 1045 (1326)
Q Consensus 1041 ~~~~G 1045 (1326)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 77654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=314.38 Aligned_cols=202 Identities=22% Similarity=0.362 Sum_probs=168.6
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHH
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEMTVRETL 219 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l 219 (1326)
.|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 92 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNI 92 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHH
Confidence 3899999999999999999999999999999999987 9999999988754322 35799999999889999999999
Q ss_pred HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChh
Q 046656 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG 299 (1326)
Q Consensus 220 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 299 (1326)
.++... ... . .+ .....++++++.+||++..++. +..||||
T Consensus 93 ~~~~~~-~~~--~------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 133 (232)
T PRK10771 93 GLGLNP-GLK--L------NA-------------------------AQREKLHAIARQMGIEDLLARL-----PGQLSGG 133 (232)
T ss_pred hccccc-ccC--C------CH-------------------------HHHHHHHHHHHHcCcHHHHhCC-----cccCCHH
Confidence 875321 000 0 00 0112356778999998766654 4579999
Q ss_pred hhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEc
Q 046656 300 QKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 379 (1326)
Q Consensus 300 qkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 379 (1326)
|||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++.+++|+|++|++|++++.|
T Consensus 134 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999876532 456666889988999999999999999999999
Q ss_pred ChhhHH
Q 046656 380 PCELVL 385 (1326)
Q Consensus 380 ~~~~~~ 385 (1326)
+.+++.
T Consensus 213 ~~~~~~ 218 (232)
T PRK10771 213 PTDELL 218 (232)
T ss_pred CHHHHH
Confidence 988764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=316.18 Aligned_cols=219 Identities=25% Similarity=0.299 Sum_probs=170.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|+|++|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 46777777653 24699999999999999999999999999999999998421146899999998764
Q ss_pred cc---c-ccceEEEeecCCCCCCCCCHHHHHHHHHH-hhc--c-CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 046656 890 QE---T-FTRISGYCEQNDIHSPLVTVYESLLYSAW-LRL--R-TEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGES 960 (1326)
Q Consensus 890 ~~---~-~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~-lr~--~-~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~ 960 (1326)
.. . .++.++|++|++.+++.+|+.+++.+... ++. . .........++++++++.+++. +..+..+. .
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 21 1 22468999999888887777776543211 110 0 0112223345678899999985 44444431 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHH-hceeeEEecCc
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1039 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gg 1039 (1326)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 59999999999999999999999999999999999999999999998877899999999976 34444 799999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 89999875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=326.04 Aligned_cols=205 Identities=20% Similarity=0.291 Sum_probs=166.7
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC----C----CccceEEEEccCCC-
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE----F----VPQRTAAYISQHDV- 208 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~- 208 (1326)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5899999999999999999999999999999999999887 9999999987642 1 12357999999863
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-cccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 287 (1326)
.+...||+||+.|+....+.. . .+....++.+++.+||+ ...+
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~ll~~~~L~~~~~~-- 145 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN----------K------------------------QEAYKKVPELLKLVQLPEDYVK-- 145 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhc--
Confidence 233469999999864322110 0 00112245678888984 4444
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
..+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.++||+|
T Consensus 146 ---~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 146 ---RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred ---CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE
Confidence 345679999999999999999999999999999999999999999999988653 3556777899999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=329.25 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=172.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC-ceeeEEEECCccCCCCCc-------cceEEEEccCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNEFVP-------QRTAAYISQHD 207 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 207 (1326)
...+|+|||+.|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 3569999999999999999999999999999999999986421 138999999998765432 23699999986
Q ss_pred C--CCCCCCHHHHHHhhhhhccC-CccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 208 V--HIGEMTVRETLAFSARCQGV-GSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 208 ~--~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
. +.+.+||.+++.+....... +..+. + ..+....+.++|+.+||++..
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~------~-----------------------~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQ------R-----------------------FGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccc------c-----------------------HHHHHHHHHHHHHHCCCCChH
Confidence 5 57889999999764321100 00000 0 001122356789999997532
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+ +-+..+..|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+. .+.++++++|+...+.+++
T Consensus 150 ~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~ 226 (330)
T PRK15093 150 D--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWA 226 (330)
T ss_pred H--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhC
Confidence 2 123567789999999999999999999999999999999999999999999998653 3567777999999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|++|++|+|++.|+.+++.
T Consensus 227 dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 227 DKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CEEEEEECCEEEEECCHHHHH
Confidence 999999999999999998774
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=279.38 Aligned_cols=203 Identities=27% Similarity=0.360 Sum_probs=173.2
Q ss_pred ccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEE
Q 046656 131 TTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYI 203 (1326)
Q Consensus 131 ~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv 203 (1326)
.....+.+||++|++.+++||-++|+|||||||||||-+|+|+-.|+ +|+|.+.|+++...+. .+.+|+|
T Consensus 17 g~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfV 93 (228)
T COG4181 17 GQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFV 93 (228)
T ss_pred cCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEE
Confidence 33456788999999999999999999999999999999999999998 9999999999865532 2679999
Q ss_pred ccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc
Q 046656 204 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283 (1326)
Q Consensus 204 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 283 (1326)
+|...++|+||-.||+...+.++|-+.+. ........|+.+||.+-
T Consensus 94 FQSF~Lip~ltAlENV~lPleL~ge~~~~----------------------------------~~~~A~~lL~~vGLg~R 139 (228)
T COG4181 94 FQSFHLIPNLTALENVALPLELRGESSAD----------------------------------SRAGAKALLEAVGLGKR 139 (228)
T ss_pred EEeeeccccchhhhhccchhhhcCCcccc----------------------------------HHHHHHHHHHHhCcccc
Confidence 99999999999999999988877632210 01123456889999876
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
.+ .++.+|||||+|||+||||++..|+|||-||||-.||..|..+|.+.|..+.+. .+++++.++|+. ....-
T Consensus 140 l~-----HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~R 212 (228)
T COG4181 140 LT-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAAR 212 (228)
T ss_pred cc-----cCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHh
Confidence 55 456789999999999999999999999999999999999999999999998764 578888788875 56778
Q ss_pred CCeEEEecCCeEEE
Q 046656 364 FDDIILLSDGQIVY 377 (1326)
Q Consensus 364 ~D~vilL~~G~iv~ 377 (1326)
|||.+-|.+|+++.
T Consensus 213 c~R~~r~~~G~l~~ 226 (228)
T COG4181 213 CDRQLRLRSGRLVE 226 (228)
T ss_pred hhheeeeecceecc
Confidence 99999999999874
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=303.19 Aligned_cols=159 Identities=32% Similarity=0.440 Sum_probs=142.7
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-----ccccceEEEeecCCCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-----ETFTRISGYCEQNDIHSPL 909 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~ 909 (1326)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++..++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 469999999999999999999999999999999999876 468999999987542 2345679999999888888
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 046656 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 989 (1326)
Q Consensus 910 ~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPt 989 (1326)
.|++|++.+. ||+|||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 8999987542 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 990 SGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 990 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999877 899999999986 566689999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=318.03 Aligned_cols=212 Identities=22% Similarity=0.348 Sum_probs=165.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCC--CCceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS--SLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+++|+|+|+++++||+++|+||||||||||+++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 34699999999999999999999999999999999998753 112389999999887531 12457999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ +||+||+.++....+.... .+....++++++.+++.+......
T Consensus 95 ~~~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~ 140 (250)
T PRK14240 95 PFP-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHH
Confidence 777 8999999986543221000 001122345566776642111111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|+.++|+.+++.+.+|+|+
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~v~ 216 (250)
T PRK14240 141 -KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK---DYTIVIVTHNMQQASRISDKTA 216 (250)
T ss_pred -hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEEeCHHHHHhhCCEEE
Confidence 245668999999999999999999999999999999999999999999998742 3566668888888999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+.+++.
T Consensus 217 ~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 217 FFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=307.20 Aligned_cols=183 Identities=25% Similarity=0.302 Sum_probs=154.7
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc--ccccceEEEeecCCCCCCCCCH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ--ETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 569999999999999999999999999999999999876 458999999987532 2244678999999888888999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
.||+.+....+. . + ++.++++++.+++.+..++.++ .||||||||++|||+|+.+|++|+|||||+||
T Consensus 91 ~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 91 LENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred HHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999987543321 1 1 2357889999999887777654 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeE
Q 046656 993 DARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
|+.++..+++.|+++.++|.|||++||++. + ..+++++.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~--~~~~~~~~ 197 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQDL-G--LVEARELR 197 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEcccc-c--ccceEEee
Confidence 999999999999998777999999999975 2 23466653
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=319.94 Aligned_cols=195 Identities=27% Similarity=0.347 Sum_probs=156.4
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCH
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 59999999999999999999999999999999999876 468999999987532 234567899999988776 699
Q ss_pred HHHHHHHHHhhccCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 046656 913 YESLLYSAWLRLRTEVDSETRK-----MFIEEIMELV--ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illL 985 (1326)
+||+.+.... ....... ..+++.++.+ ++....+..+ ..||+|||||++|||+|+.+|++|+|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERG-----VKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCC-----CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875321 1111111 1234445544 4444444332 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 986 DEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 986 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||||+|||+.++..+.+.|+++.+ |.|||++||++. ++ +.+|++++|++ |+++..|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 999999999999999999999864 899999999986 45 45999999996 688888874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=357.88 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=178.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 338 ~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i 404 (574)
T PRK11160 338 SLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPI 404 (574)
T ss_pred eEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 6999999998842 12359999999999999999999999999999999999887 4689999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc------cccccCCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR------QSLVGLPGE 959 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~------~~~vg~~~~ 959 (1326)
++ ..+++.++||+|++.+++ .|++||+.++. .+.+ ++.++++++.+++.+.. |+.+|.. +
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g 473 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PNAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-G 473 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----CccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-C
Confidence 54 346778999999998876 59999998752 1222 34578899999987653 4455543 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
..||||||||++|||||+++|++|+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++ |
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~-G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN-G 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-C
Confidence 5799999999999999999999999999999999999999999999885 4899999999986 3467999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 550 ~i~~~g~~ 557 (574)
T PRK11160 550 QIIEQGTH 557 (574)
T ss_pred eEEEeCCH
Confidence 99999985
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=319.25 Aligned_cols=210 Identities=19% Similarity=0.270 Sum_probs=166.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCC-----CccceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 209 (1326)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|+..+
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 105 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCcc
Confidence 469999999999999999999999999999999999986 2111389999999887421 124579999999877
Q ss_pred CCCCCHHHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 210 IGEMTVRETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
++ .||+||+.++.... +.. . .+....++++++.+|+........
T Consensus 106 ~~-~tv~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 150 (260)
T PRK10744 106 FP-MSIYDNIAFGVRLFEKLS----------R------------------------AEMDERVEWALTKAALWNEVKDKL 150 (260)
T ss_pred Cc-CcHHHHHhhhHhhcCCCC----------H------------------------HHHHHHHHHHHHHcCCChhhHHHH
Confidence 76 89999998865322 110 0 001123456788888742111111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. +.+|+.++|+..++.+++|+++
T Consensus 151 -~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~i~ 226 (260)
T PRK10744 151 -HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ---DYTVVIVTHNMQQAARCSDYTA 226 (260)
T ss_pred -hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEE
Confidence 244568999999999999999999999999999999999999999999998742 3567778898889999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+.+++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 227 FMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=317.54 Aligned_cols=214 Identities=20% Similarity=0.297 Sum_probs=168.7
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCCC-----ccceEEEEccCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEFV-----PQRTAAYISQHD 207 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d 207 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|..+ |....+|+|.++|.++.... .++.++|++|++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 34579999999999999999999999999999999999976 21113899999998764321 245799999998
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+++. ||+||+.+.....+.... . .+....++.+++.+||.+...+.
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~ 142 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHGLAKN--------K------------------------KKLDEIVEKSLTSVGLWEELGDR 142 (251)
T ss_pred ccccC-CHHHHHHHHHHhcCCCCC--------H------------------------HHHHHHHHHHHHHcCCCchhhhH
Confidence 87875 999999886432211000 0 00112245678888986532222
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
. +..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|++++|+..++.+++|+|
T Consensus 143 ~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiiisH~~~~~~~~~d~i 218 (251)
T PRK14244 143 L-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--K-NFTIIVVTHSMKQAKKVSDRV 218 (251)
T ss_pred h-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhcCEE
Confidence 2 24566899999999999999999999999999999999999999999999873 2 466777889988999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 219 AFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=309.41 Aligned_cols=202 Identities=26% Similarity=0.395 Sum_probs=165.6
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-------ccceEEE
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-------PQRTAAY 202 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~y 202 (1326)
++++++++.+ |+|+.+++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|
T Consensus 6 l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 6 IEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEE
Confidence 3445555555 99999999 999999999999999999999999987 999999998764211 2357999
Q ss_pred EccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc
Q 046656 203 ISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV 282 (1326)
Q Consensus 203 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 282 (1326)
++|++.+++.+|++||+.+..... . .. .....++.+++.+||++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~---~--------~~-------------------------~~~~~~~~~l~~~~l~~ 123 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRK---R--------NR-------------------------EDRISVDELLDLLGLDH 123 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhC---C--------HH-------------------------HHHHHHHHHHHHcCCHh
Confidence 999998888999999998754211 0 00 00122456788999976
Q ss_pred cccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHh
Q 046656 283 CADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD 362 (1326)
Q Consensus 283 ~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 362 (1326)
..+. .+..||||||||++||++++.+|++++|||||+|||+.++..+.+.+++++.. .+++++.++|+.+++.+
T Consensus 124 ~~~~-----~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 124 LLNR-----YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLSEAEY 197 (214)
T ss_pred Hhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHHHHHH
Confidence 5553 45679999999999999999999999999999999999999999999998653 25567778899999999
Q ss_pred hCCeEEEecCCeEEEEc
Q 046656 363 LFDDIILLSDGQIVYQG 379 (1326)
Q Consensus 363 ~~D~vilL~~G~iv~~G 379 (1326)
++|++++|++|+++.+|
T Consensus 198 ~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 198 LADRIVVMEDGRLQYIG 214 (214)
T ss_pred hcCEEEEEECCEEEecC
Confidence 99999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=305.24 Aligned_cols=195 Identities=26% Similarity=0.389 Sum_probs=170.7
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-------CccceEEEEccCCCCCCCCC
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-------VPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 214 (1326)
++++..+.-.+|||-|+||||||||+|+|+|+.+|+ +|.|.+||..+.+. ..+|++|||+|+-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 677777775799999999999999999999999998 99999999776432 12589999999999999999
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+-||.|+...- . ...-|++.+.||++|..+ +++.
T Consensus 93 VrgNL~YG~~~~------------~----------------------------~~~fd~iv~lLGI~hLL~-----R~P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS------------M----------------------------RAQFDQLVALLGIEHLLD-----RYPG 127 (352)
T ss_pred Eecchhhhhccc------------c----------------------------hHhHHHHHHHhCcHHHHh-----hCCC
Confidence 999999975321 0 011367788999999876 6677
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.|||||||||+|||||.+.|++|+||||.+.||-....+++-.|.++.+.. +.-|+.++|..+|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 899999999999999999999999999999999999999999999987754 4567779999999999999999999999
Q ss_pred EEEEcChhhHH
Q 046656 375 IVYQGPCELVL 385 (1326)
Q Consensus 375 iv~~G~~~~~~ 385 (1326)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999999885
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=309.08 Aligned_cols=199 Identities=20% Similarity=0.311 Sum_probs=165.6
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
+++|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999987 999999998875432 2467999999998899999999
Q ss_pred HHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCC
Q 046656 218 TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297 (1326)
Q Consensus 218 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 297 (1326)
|+.+..... .... .+....++++++.+||++..++ .++.||
T Consensus 90 n~~~~~~~~-~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 130 (213)
T TIGR01277 90 NIGLGLHPG-LKLN---------------------------------AEQQEKVVDAAQQVGIADYLDR-----LPEQLS 130 (213)
T ss_pred HHHhHhhcc-CCcc---------------------------------HHHHHHHHHHHHHcCcHHHhhC-----CcccCC
Confidence 998753210 0000 0011234567889999766554 455799
Q ss_pred hhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEE
Q 046656 298 GGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVY 377 (1326)
Q Consensus 298 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 377 (1326)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++... .+++|++++|+.+++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999987642 35667778899989999999999999999999
Q ss_pred EcC
Q 046656 378 QGP 380 (1326)
Q Consensus 378 ~G~ 380 (1326)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=319.96 Aligned_cols=216 Identities=25% Similarity=0.301 Sum_probs=171.2
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCCC----ccceEEEEcc
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEFV----PQRTAAYISQ 205 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q 205 (1326)
.+++.+++|+|+|+.+++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.++.+.. .++.++|++|
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 108 (276)
T PRK14271 29 LGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQ 108 (276)
T ss_pred EEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEecc
Confidence 3344567999999999999999999999999999999999998751 013899999998875431 2457999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
++.+++ .||+||+.++........ . .+....++.+++.+||....+
T Consensus 109 ~~~l~~-~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~ 154 (276)
T PRK14271 109 RPNPFP-MSIMDNVLAGVRAHKLVP---------R------------------------KEFRGVAQARLTEVGLWDAVK 154 (276)
T ss_pred CCccCC-ccHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCCCchhh
Confidence 988777 899999988643211000 0 001112355678888865332
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
+.. +..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. + .+|++++|+.+++.+++|
T Consensus 155 ~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d 230 (276)
T PRK14271 155 DRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISD 230 (276)
T ss_pred hHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCC
Confidence 222 245668999999999999999999999999999999999999999999998753 3 567778899999999999
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
++++|++|++++.|+++++.
T Consensus 231 ri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 231 RAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998774
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=317.20 Aligned_cols=212 Identities=22% Similarity=0.351 Sum_probs=168.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCC--CCceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS--SLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
++++|+|+|+.+++||+++|+|||||||||||++|+|.++| ....+|+|.++|.++... ..++.++|++|++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 45699999999999999999999999999999999999874 111389999999876531 12457999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ .||+||+.++....+...+ ......+++.++.+|+....+. .
T Consensus 95 ~~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~-~ 139 (250)
T PRK14262 95 PFP-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKS-E 139 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHH-H
Confidence 777 8999999986533211000 0011124556777787532111 1
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..+.+||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. + ++++.++|+..++.+++|+|+
T Consensus 140 ~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~ 216 (250)
T PRK14262 140 LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIA 216 (250)
T ss_pred HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEE
Confidence 2355678999999999999999999999999999999999999999999998743 3 567778888888999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 217 FMYRGELIEYGPTREIV 233 (250)
T ss_pred EEECCEEEEecCHHHHH
Confidence 99999999999988764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=316.45 Aligned_cols=214 Identities=22% Similarity=0.250 Sum_probs=173.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 16 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 16 KSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 578899987763 246999999999999999999999999999999999986531 2689999999
Q ss_pred ccCC----c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHcCCcc----ccccc
Q 046656 886 YPKK----Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDS-ETRKMFIEEIMELVELKP----LRQSL 953 (1326)
Q Consensus 886 ~~~~----~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~-~~~~~~v~~~l~~l~l~~----~~~~~ 953 (1326)
.+.. . ..+++.++|++|+..+++. |++||+.+..... .... ...++.++++++.+++.+ ..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 7642 1 1345678999999888875 9999998764322 1111 222355788888888742 23333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 954 vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
+ ..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++
T Consensus 159 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 A-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 3 46999999999999999999999999999999999999999999999865 699999999986 5778899999
Q ss_pred EEecCcEEEEEcCC
Q 046656 1034 LMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1034 ~l~~gg~~~~~G~~ 1047 (1326)
+|++ |+++..|+.
T Consensus 232 ~l~~-G~i~~~g~~ 244 (265)
T PRK14252 232 YMYM-GELIEFGAT 244 (265)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 798998875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.30 Aligned_cols=207 Identities=21% Similarity=0.245 Sum_probs=169.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCC--CCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDV--HIG 211 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 211 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 9999999988753221 246999999864 567
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccccC
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLVGD 290 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 290 (1326)
.+||.|++.+..+...... . .+....++.+++.+||. ...+.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 145 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------P------------------------EQREKQIIETLRQVGLLPDHASY---- 145 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCCChHHHhc----
Confidence 8899999988644321000 0 00112356778999994 44443
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++..+||++++|
T Consensus 146 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 146 -YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred -CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 34579999999999999999999999999999999999999999999998653 3566777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=319.41 Aligned_cols=196 Identities=30% Similarity=0.426 Sum_probs=154.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
+.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 459999999999999999999999999999999999876 468999999987532 223456999999987776 69
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL-------VGLPGESGLSTEQRKRLTIAVELVANPSIIF 984 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------vg~~~~~~LSgGqrqrl~ia~aL~~~p~ill 984 (1326)
++|++.+.... ...+ .+++.++..++.+..+.+ .. .....||||||||++||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPD-----ATDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCC-----CCHH----HHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999874311 1111 122333333332221111 11 1135699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 985 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 985 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|++ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7999999999986 44 47999999986 688998874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=310.63 Aligned_cols=210 Identities=24% Similarity=0.303 Sum_probs=166.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEc--Cc-
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS--GY- 886 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~--g~- 886 (1326)
++++|+++.++.... ...++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 467788776642100 0012469999999999999999999999999999999999876 458999998 42
Q ss_pred -cCCc---cc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCC
Q 046656 887 -PKKQ---ET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLP 957 (1326)
Q Consensus 887 -~~~~---~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~ 957 (1326)
+... .. .++.+||++|+..+++.+||+|++.+..... ........+.+.++++.+++.+ +.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 147 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP--- 147 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc---
Confidence 3221 11 1346899999998899999999998754322 2233334456888999999975 345443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. .+.+.+|+++.+.
T Consensus 148 --~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 --ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 469999999999999999999999999999999999999999999998877999999999964 4556899998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=317.08 Aligned_cols=208 Identities=25% Similarity=0.359 Sum_probs=168.7
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc-----CCCCCc-------cceEEEE
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD-----MNEFVP-------QRTAAYI 203 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv 203 (1326)
.+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|+
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v 94 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEE
Confidence 346999999999999999999999999999999999999987 9999999987 554321 2369999
Q ss_pred ccCC--CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc
Q 046656 204 SQHD--VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD 281 (1326)
Q Consensus 204 ~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 281 (1326)
+|++ .+.+.+|+.||+.+.....+. ..+ .+....++++++.+|+.
T Consensus 95 ~q~~~~~~~~~~~~~~~i~~~~~~~~~-~~~--------------------------------~~~~~~~~~~l~~~~l~ 141 (258)
T PRK11701 95 HQHPRDGLRMQVSAGGNIGERLMAVGA-RHY--------------------------------GDIRATAGDWLERVEID 141 (258)
T ss_pred eeCcccccCccccHHHHHHHHHHHhcc-CcH--------------------------------HHHHHHHHHHHHHcCCC
Confidence 9986 356778999999764321100 000 00112346678889986
Q ss_pred c-cccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH
Q 046656 282 V-CADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET 360 (1326)
Q Consensus 282 ~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 360 (1326)
. ..+ ..+..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.++++... .+.+|+.++|+..++
T Consensus 142 ~~~~~-----~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~ 215 (258)
T PRK11701 142 AARID-----DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVA 215 (258)
T ss_pred hhHHh-----CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHH
Confidence 3 344 345679999999999999999999999999999999999999999999987653 356777789999999
Q ss_pred HhhCCeEEEecCCeEEEEcChhhHH
Q 046656 361 YDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 361 ~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
.+.+|+|++|++|++++.|+++++.
T Consensus 216 ~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 216 RLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999988763
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=315.48 Aligned_cols=212 Identities=19% Similarity=0.241 Sum_probs=167.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC--ceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL--KVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 3569999999999999999999999999999999999998741 1269999999876432 12467999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++. ||+||+.++....+...+ + +.....+.+++.+||.+.....
T Consensus 96 ~~~~-tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~l~~~- 140 (251)
T PRK14249 96 PFPK-SIFDNVAFGPRMLGTTAQ-----S----------------------------RLDEVVEKSLRQAALWDEVKDN- 140 (251)
T ss_pred cCcC-cHHHHHhhHHHhcCCChh-----h----------------------------HHHHHHHHHHHHhCCchhhhhH-
Confidence 8875 999999986543221000 0 0011234456666664321111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|+.++|+..++.++||+++
T Consensus 141 ~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~~tilivsh~~~~~~~~~d~i~ 217 (251)
T PRK14249 141 LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--Q-NYTIAIVTHNMQQAARASDWTG 217 (251)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHhhCCEEE
Confidence 234567899999999999999999999999999999999999999999999873 2 4567778999999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++++.|+++++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 218 FLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCeEEEeCCHHHHH
Confidence 99999999999988773
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=317.38 Aligned_cols=211 Identities=25% Similarity=0.390 Sum_probs=165.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 367888887653 12359999999999999999999999999999999999876 4589999999875
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccc-c-----CCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV-G-----LPGE 959 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v-g-----~~~~ 959 (1326)
.. ..+++.++|++|+..+++. |++||+.+... ... ...+++.++.+++.+..+... | ....
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999877765 99999976421 111 122444555555543333221 0 0113
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 5799999999999999999999999999999999999999999999986 5899999999986 34 56999999985 6
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88887764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=366.09 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=174.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+|+|+.. +++.+|+|+|++|+|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 58999999988521 12469999999999999999999999999999999999887 4589999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
++ ..+++.++||+|++.++. .|++|||.++. .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~- 614 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK- 614 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-
Confidence 53 446778999999998875 69999998752 1222 3347788888887654 34556543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||++++..+++ .. ..+++|+|++||+++ ..+.+|+|++|++
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~- 688 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK- 688 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999988 22 235899999999975 5678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 689 G~ive~Gt~ 697 (711)
T TIGR00958 689 GSVVEMGTH 697 (711)
T ss_pred CEEEEeeCH
Confidence 799999985
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=354.12 Aligned_cols=209 Identities=29% Similarity=0.439 Sum_probs=169.7
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
++++|+|+|+.++|||.++|+||||||||||++.|.|.++|+ +|+|.+||.++++... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 457999999999999999999999999999999999999997 9999999999887654 578999999887776
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+|||.++..-- . .+++.+..+.++ ....+. .++++.||.|| +.
T Consensus 417 ~TI~~NI~~g~~~a---t----~eei~~a~k~a~------------------------~~d~I~--~lp~g~dt~vg-e~ 462 (567)
T COG1132 417 GTIRENIALGRPDA---T----DEEIEEALKLAN------------------------AHEFIA--NLPDGYDTIVG-ER 462 (567)
T ss_pred ccHHHHHhcCCCCC---C----HHHHHHHHHHhC------------------------hHHHHH--hCcccccceec-CC
Confidence 89999999974210 0 011111111100 112222 35778899999 45
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
...||||||||++||||++.+|+||+||||||+||+.+...|.+.++++. .++|+++ +.|..+.+.+ +|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-ADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-CCEEEEEEC
Confidence 66899999999999999999999999999999999999999999999764 2456666 7777755555 999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|++++.|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999874
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=314.60 Aligned_cols=198 Identities=24% Similarity=0.317 Sum_probs=166.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 377888887763 2469999999999999999999999999999999999876 45899999872
Q ss_pred CcccccceEEEeecCCCCCCC--CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPL--VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~--~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
..++|++|++.+++. .|+.+++.+. .... ++.+.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877665 4777776431 1111 234788999999988777765 3599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|+ + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999986 5778899999995 4 588888
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 203 ~~ 204 (251)
T PRK09544 203 TP 204 (251)
T ss_pred CH
Confidence 75
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=348.06 Aligned_cols=214 Identities=23% Similarity=0.271 Sum_probs=174.5
Q ss_pred EEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcC-----
Q 046656 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG----- 885 (1326)
Q Consensus 811 ~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g----- 885 (1326)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 4677776652 3469999999999999999999999999999999999852014589999972
Q ss_pred ------------------ccCC----------c---ccccceEEEeecC-CCCCCCCCHHHHHHHHHHhhccCCCCHHHH
Q 046656 886 ------------------YPKK----------Q---ETFTRISGYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSETR 933 (1326)
Q Consensus 886 ------------------~~~~----------~---~~~~~~~gyv~Q~-~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~ 933 (1326)
.++. . ...++.+||++|+ +.+++.+||+|++.|..... ..+.++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 1110 0 1134568999997 67788899999998865322 1233444
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 046656 934 KMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGR 1012 (1326)
Q Consensus 934 ~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~ 1012 (1326)
++++.++++.++|.+..++.++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 5678999999999887777653 6999999999999999999999999999999999999999999999865 489
Q ss_pred EEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 1013 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1013 tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|||++||++. .+.+.||++++|++ |++++.|+.
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP 253 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH
Confidence 9999999986 56778999999986 688888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=330.41 Aligned_cols=191 Identities=23% Similarity=0.301 Sum_probs=161.8
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+|+|+||+|++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 469999999999999999999999999999999999876 4589999999641 1222334566789999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
++.+..... ..+..+..+.++++++.+++.+..++.++ .||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754332 22334444567889999999887777653 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 995 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 995 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
.++..+++.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|+.
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~ 227 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDI 227 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999998877999999999986 57788999999985 799999975
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.68 Aligned_cols=210 Identities=22% Similarity=0.309 Sum_probs=164.3
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC--ceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL--KVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.++|++|++.
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 3469999999999999999999999999999999999986310 1289999999876421 12356999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ .||+||+.+++...+... + ....++.+++.+++.......
T Consensus 105 l~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~- 147 (269)
T PRK14259 105 PFP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDK- 147 (269)
T ss_pred cch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhh-
Confidence 787 599999998754322100 0 001134456666653211111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
-+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|+.++|+..++.++||+++
T Consensus 148 ~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~ 224 (269)
T PRK14259 148 LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNMQQAVRVSDMTA 224 (269)
T ss_pred hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEE
Confidence 1345668999999999999999999999999999999999999999999998742 3567778899999999999999
Q ss_pred EecC-----------CeEEEEcChhhHH
Q 046656 369 LLSD-----------GQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~-----------G~iv~~G~~~~~~ 385 (1326)
+|++ |++++.|+++++.
T Consensus 225 ~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 225 FFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEeccccccccccccceEEEeCCHHHHH
Confidence 9996 6789999998874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=315.41 Aligned_cols=212 Identities=22% Similarity=0.321 Sum_probs=166.1
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCC-C---CccceEEEEccCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNE-F---VPQRTAAYISQHDV 208 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~-~---~~~~~~~yv~Q~d~ 208 (1326)
+++++|+|+|+.+++||+++|+||||||||||+++|+|..+|. ...+|+|.++|.++.. . ..++.++|++|++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 3456999999999999999999999999999999999998752 0138999999987642 1 12457999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ .||+||+.++....+...+ + .....++..++.+|+.+......
T Consensus 94 ~~~-~tv~~~l~~~~~~~~~~~~-----~----------------------------~~~~~~~~~~~~~~l~~~~~~~~ 139 (249)
T PRK14253 94 PFP-MSIYENVAYGLRAQGIKDK-----K----------------------------VLDEVVERSLRGAALWDEVKDRL 139 (249)
T ss_pred cCc-ccHHHHHHhHHHhcCCCch-----H----------------------------HHHHHHHHHHHHcCCchhhhHHh
Confidence 887 8999999886432211000 0 00112344566667643211111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+..++.+.||+++
T Consensus 140 -~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~ 215 (249)
T PRK14253 140 -KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTA 215 (249)
T ss_pred -hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEE
Confidence 245668999999999999999999999999999999999999999999999753 3 566778888889999999999
Q ss_pred EecCCeEEEEcChhhH
Q 046656 369 LLSDGQIVYQGPCELV 384 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~ 384 (1326)
+|++|+++..|+.+++
T Consensus 216 ~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 216 FFLMGELVEHDDTQVI 231 (249)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998766
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=308.60 Aligned_cols=201 Identities=20% Similarity=0.296 Sum_probs=152.8
Q ss_pred CceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc
Q 046656 807 PYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886 (1326)
Q Consensus 807 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 886 (1326)
|..+-.+||+|.++ +.++++++++|-|.--..++|+||||.||||||++|.|.+.+ ..|+..-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc--
Confidence 44677889998875 346799999999999999999999999999999999998773 46765422
Q ss_pred cCCcccccceEEEeecCC--CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 887 PKKQETFTRISGYCEQND--IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 887 ~~~~~~~~~~~gyv~Q~~--~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.+-.+|+..|+. .+...-|+-|.|.-. .+++-+ .....|-.+||...++++- ...|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~------FNlpyq----~ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRK------FNLPYQ----EARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHh------cCCChH----HHHHHhhhhhhhhccceEe----eeecCC
Confidence 223578887753 344455777766421 133322 2456788899988887753 356999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
|||-||++|---++.|+||||||||++||.++...+-+.|++. ...||+++||-.. +.+--..+.++.+.|.--..
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9999999999999999999999999999999999999999876 4579999999763 44444577788776654455
Q ss_pred cCC
Q 046656 1045 GPL 1047 (1326)
Q Consensus 1045 G~~ 1047 (1326)
|+.
T Consensus 784 GdF 786 (807)
T KOG0066|consen 784 GDF 786 (807)
T ss_pred ccH
Confidence 543
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=314.26 Aligned_cols=210 Identities=22% Similarity=0.265 Sum_probs=167.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC-ceeeEEEECCccCCCCCc-cceEEEEccCCC--CCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNEFVP-QRTAAYISQHDV--HIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~ 212 (1326)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|.++..... ++.++||+|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 358999999999999999999999999999999999998710 028999999988753322 257999999864 4466
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.|+.+++.+.++..+.. . ....++.+++.+||.+.. +. -+..
T Consensus 96 ~~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~l~~~~l~~~~-~~-~~~~ 137 (254)
T PRK10418 96 HTMHTHARETCLALGKP----------A--------------------------DDATLTAALEAVGLENAA-RV-LKLY 137 (254)
T ss_pred ccHHHHHHHHHHHcCCC----------h--------------------------HHHHHHHHHHHcCCCChh-hh-hhcC
Confidence 79999987643322110 0 002245678889987521 01 1244
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++.+++|++++|++
T Consensus 138 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l~~ 216 (254)
T PRK10418 138 PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVMSH 216 (254)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEEEC
Confidence 5679999999999999999999999999999999999999999999998653 356677788999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|++++.|+.+++.
T Consensus 217 G~i~~~~~~~~~~ 229 (254)
T PRK10418 217 GRIVEQGDVETLF 229 (254)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=300.07 Aligned_cols=159 Identities=25% Similarity=0.435 Sum_probs=141.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc----cccceEEEeecCC---CCCCC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE----TFTRISGYCEQND---IHSPL 909 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~ 909 (1326)
+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999876 4589999999876432 2356799999984 56788
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 046656 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 989 (1326)
Q Consensus 910 ~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPt 989 (1326)
+|++||+.+... ||+|||||++|||||+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999876321 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 990 SGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 990 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G 180 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEG 180 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCC
Confidence 999999999999999998777899999999986 677889999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=316.25 Aligned_cols=214 Identities=20% Similarity=0.245 Sum_probs=170.7
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC--ceeeEEEECCccCCCC-----CccceEEEEc
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL--KVSGRVTYNGHDMNEF-----VPQRTAAYIS 204 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~ 204 (1326)
.+++++++|+|+|+.+++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++
T Consensus 16 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 95 (261)
T PRK14263 16 IFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVF 95 (261)
T ss_pred EEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEe
Confidence 34455679999999999999999999999999999999999997610 1389999999887431 1245699999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|++.++ .+|++||+.++....+.. . +....++++++.+||.+..
T Consensus 96 q~~~~~-~~tv~enl~~~~~~~~~~------~-----------------------------~~~~~~~~~l~~~~l~~~i 139 (261)
T PRK14263 96 QQPNPF-SMSIFDNVAFGLRLNRYK------G-----------------------------DLGDRVKHALQGAALWDEV 139 (261)
T ss_pred cCCccc-cccHHHHHHHHHhhcCch------H-----------------------------HHHHHHHHHHHHcCCchhh
Confidence 998776 699999999875432100 0 0012245667888875432
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+... +...+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+..++.+++
T Consensus 140 ~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~---~~tii~isH~~~~i~~~~ 215 (261)
T PRK14263 140 KDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK---DYTIALVTHNMQQAIRVA 215 (261)
T ss_pred hhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhC
Confidence 2222 245678999999999999999999999999999999999999999999998742 356777889998999999
Q ss_pred CeEEEec--------CCeEEEEcChhhHH
Q 046656 365 DDIILLS--------DGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~--------~G~iv~~G~~~~~~ 385 (1326)
|+|++|+ +|++++.|+.+++.
T Consensus 216 d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 216 DTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred CEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999995 89999999988764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=314.59 Aligned_cols=214 Identities=22% Similarity=0.309 Sum_probs=166.5
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCC--ceeeEEEECCccCCCC-----CccceEEEEccCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL--KVSGRVTYNGHDMNEF-----VPQRTAAYISQHD 207 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 207 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 34579999999999999999999999999999999999987631 1379999999887531 1235799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+++.+|++||+.++....+...+ . +.....+..++.+++.......
T Consensus 95 ~~~~~~t~~enl~~~~~~~~~~~~----~-----------------------------~~~~~~~~~l~~~~l~~~l~~~ 141 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLKLAGIRDR----D-----------------------------HLMEVAERSLRGAALWDEVKDR 141 (252)
T ss_pred ccCcCCCHHHHHHHHHHhcCCCCH----H-----------------------------HHHHHHHHHHHHcCcchhhhhh
Confidence 889999999999876432211000 0 0011123344555543211000
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
-+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+..++.++||+|
T Consensus 142 -~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i 217 (252)
T PRK14272 142 -LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK---VTTIIIVTHNMHQAARVSDTT 217 (252)
T ss_pred -hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEE
Confidence 1244567999999999999999999999999999999999999999999998742 366777889988999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|++++.|+++++.
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 218 SFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988774
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=317.06 Aligned_cols=208 Identities=18% Similarity=0.258 Sum_probs=164.1
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC-----CCCceeeEEEECCccCCCC-----CccceEEEEccC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD-----SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQH 206 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~ 206 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|..+ |+ +|+|.++|.++... ..++.++|++|+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 469999999999999999999999999999999999864 34 89999999887532 123579999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
+.+++. ||+||+.++....+... . . .....++..++.+|+......
T Consensus 111 ~~~~~~-tv~enl~~~~~~~~~~~--~---~----------------------------~~~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 111 PNPFPK-SIYNNITHALKYAGERR--K---S----------------------------VLDEIVEESLTKAALWDEVKD 156 (268)
T ss_pred CccCcc-cHHHHHHHHHHhcCCCc--H---H----------------------------HHHHHHHHHHHHcCCCcchHH
Confidence 887774 99999988643211000 0 0 001123445677777421111
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
. -+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. + ++|+.++|+.+++.++||+
T Consensus 157 ~-~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 157 R-LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred H-HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCE
Confidence 1 1345668999999999999999999999999999999999999999999999743 3 5677788888899999999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|++|++++.|+.+++.
T Consensus 233 v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 233 TAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=317.41 Aligned_cols=212 Identities=20% Similarity=0.299 Sum_probs=167.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+++|+|+|+.+++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 346999999999999999999999999999999999998741 01389999999887531 12467999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++. ||+||+.+.....+... + + .....++++++.+|+.....+..
T Consensus 117 l~~~-tv~enl~~~~~~~~~~~--~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~ 162 (272)
T PRK14236 117 PFPK-SIYENVVYGLRLQGINN--R---R----------------------------VLDEAVERSLRGAALWDEVKDRL 162 (272)
T ss_pred cCcc-cHHHHHHHHHHhcCCCc--H---H----------------------------HHHHHHHHHHHHcCCChhHHHHh
Confidence 8875 99999988654322100 0 0 00112455677777753211111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++. + .+++.++|+.+++.+.||+|+
T Consensus 163 -~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~~~~~~d~i~ 238 (272)
T PRK14236 163 -HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--K-YTIVIVTHNMQQAARVSDYTA 238 (272)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEeCCHHHHHhhCCEEE
Confidence 345668999999999999999999999999999999999999999999999853 3 456668898889999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+++++.
T Consensus 239 ~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 239 FMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEECCEEEecCCHHHHh
Confidence 99999999999988763
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=320.47 Aligned_cols=217 Identities=25% Similarity=0.309 Sum_probs=173.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC---CeeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~---~~~~G~i~i~g 885 (1326)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 578899887763 24699999999999999999999999999999999998642 14689999999
Q ss_pred ccCCc-----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC---------CCC-HHHHHHHHHHHHHHcCCcc--
Q 046656 886 YPKKQ-----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT---------EVD-SETRKMFIEEIMELVELKP-- 948 (1326)
Q Consensus 886 ~~~~~-----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~l~~-- 948 (1326)
.++.. ...++.++|++|+..+++ .||+||+.+....+... ... .....+.++++++.+++.+
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87642 123567999999988777 59999999864321100 011 1223456888999998843
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHH
Q 046656 949 --LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIF 1026 (1326)
Q Consensus 949 --~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1026 (1326)
..+.. +..||||||||++|||||+++|+||||||||+|||+.++..+++.|+++++ +.|||++||+++ .+.
T Consensus 191 ~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~ 263 (305)
T PRK14264 191 NDRLDDN-----ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAA 263 (305)
T ss_pred hHHhcCc-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHH
Confidence 23333 246999999999999999999999999999999999999999999999876 589999999986 567
Q ss_pred HHhceee-EEecCcEEEEEcCC
Q 046656 1027 EAFDELF-LMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1027 ~~~D~v~-~l~~gg~~~~~G~~ 1047 (1326)
+.+|+++ +|++ |++++.|+.
T Consensus 264 ~~~d~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 264 RISDQTAVFLTG-GELVEYDDT 284 (305)
T ss_pred HhcCEEEEEecC-CEEEEeCCH
Confidence 8899975 5664 799999875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=317.11 Aligned_cols=216 Identities=28% Similarity=0.391 Sum_probs=170.8
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC-----CceeeEEEECCccCCCCCc---cceEEEEcc
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS-----LKVSGRVTYNGHDMNEFVP---QRTAAYISQ 205 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q 205 (1326)
++.+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q 90 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQ 90 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecc
Confidence 34457999999999999999999999999999999999999874 1137999999988754322 346899999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
++..++.+||+||+.++...... .... .. .+....++.+++.+||+...+
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~--~~~~---~~-------------------------~~~~~~~~~~l~~~~l~~~~~ 140 (272)
T PRK13547 91 AAQPAFAFSAREIVLLGRYPHAR--RAGA---LT-------------------------HRDGEIAWQALALAGATALVG 140 (272)
T ss_pred cCCCCCCCcHHHHHhhccccccc--cccc---CC-------------------------HHHHHHHHHHHHHcCcHhhhc
Confidence 97766779999999885321000 0000 00 001123566788999976554
Q ss_pred ccccCccccCCChhhhHHHHHHHHhh---------cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMV---------GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~---------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 356 (1326)
..+..|||||||||+||++|+ .+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+
T Consensus 141 -----~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tviiisH~ 214 (272)
T PRK13547 141 -----RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD-WNLGVLAIVHD 214 (272)
T ss_pred -----CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECC
Confidence 345679999999999999999 599999999999999999999999999997653 24566678888
Q ss_pred hhhHHhhCCeEEEecCCeEEEEcChhhHH
Q 046656 357 APETYDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 357 ~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
..++.++||++++|++|++++.|+.+++.
T Consensus 215 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 215 PNLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 88999999999999999999999987763
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=304.43 Aligned_cols=194 Identities=24% Similarity=0.311 Sum_probs=161.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 45677776652 2469999999999999999999999999999999999876 46899999998764
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 890 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 890 ~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
. ..+++.++|++|+..+++..||+||+.+.... . .. ...++++++.+++.+..+..++ .||+|||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHH
Confidence 2 23456799999998888889999999886421 1 11 2357899999999876666553 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ....+|...
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999975 345566543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=314.43 Aligned_cols=212 Identities=20% Similarity=0.327 Sum_probs=166.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+++|+|+|+.+++||+++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 3569999999999999999999999999999999999986 2111389999999886431 12456999999987
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ .||+||+.++....+.... + .....++.+++.+|+.......
T Consensus 96 ~~~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~- 140 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDN- 140 (251)
T ss_pred cCC-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHH-
Confidence 775 7999999886432211000 0 0012245567778884321100
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
-+..+..||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+..++.+++|+|+
T Consensus 141 ~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~ 217 (251)
T PRK14251 141 LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNLQQAGRISDQTA 217 (251)
T ss_pred hccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCHHHHHhhcCEEE
Confidence 1245668999999999999999999999999999999999999999999998742 3567778899999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+.+++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 218 FLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=314.31 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=166.4
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|.++... ..++.++|++|++.
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 456999999999999999999999999999999999987531 11389999999887542 12356999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ .||+||+.|+.+..+... . .+....++.+++.+++.+...+.
T Consensus 98 ~~~-~tv~eni~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~l~~~- 142 (253)
T PRK14261 98 PFP-KSIYENVAYGPRIHGEKN---------K------------------------KTLDTIVEKSLKGAALWDEVKDR- 142 (253)
T ss_pred cCc-ccHHHHHHhhHHhcCCCC---------H------------------------HHHHHHHHHHHHHhcCchhhHHH-
Confidence 887 499999998754322100 0 00011234456667764321111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
-+..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.++++.. + .+++.++|+.+++.+.+|+++
T Consensus 143 ~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~ 219 (253)
T PRK14261 143 LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTG 219 (253)
T ss_pred hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEE
Confidence 1345668999999999999999999999999999999999999999999998753 3 566778899889999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+.+++.
T Consensus 220 ~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 220 FMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEECCEEEEcCCHHHHH
Confidence 99999999999988763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=345.67 Aligned_cols=221 Identities=21% Similarity=0.266 Sum_probs=179.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC---eeEEEEEEcC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YISGNITISG 885 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~---~~~G~i~i~g 885 (1326)
-++++|+++.++.. ...+.+|+|+||+|++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37788888876411 01246999999999999999999999999999999999987631 2589999999
Q ss_pred ccCCcc------cc-cceEEEeecCCC--CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc---cccc
Q 046656 886 YPKKQE------TF-TRISGYCEQNDI--HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL---RQSL 953 (1326)
Q Consensus 886 ~~~~~~------~~-~~~~gyv~Q~~~--~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~ 953 (1326)
.++... .. ++.+||++|+.. +.+.+|+.|++.+..... ...+..+.+++++++++.++|.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876431 11 246899999964 567789999987643221 123344456678999999999763 4555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhcee
Q 046656 954 VGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDEL 1032 (1326)
Q Consensus 954 vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v 1032 (1326)
+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++. .+...+|++
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 4 369999999999999999999999999999999999999999999998765 899999999986 567789999
Q ss_pred eEEecCcEEEEEcCC
Q 046656 1033 FLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1033 ~~l~~gg~~~~~G~~ 1047 (1326)
++|++ |++++.|+.
T Consensus 228 ~~l~~-G~i~~~g~~ 241 (529)
T PRK15134 228 AVMQN-GRCVEQNRA 241 (529)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99996 789988875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=360.97 Aligned_cols=205 Identities=28% Similarity=0.384 Sum_probs=165.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|++++|||.++|+||||||||||+|+|+|+++|+ +|+|.+||.++++..+ ++.++||+|++.+| +.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SG 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cc
Confidence 46999999999999999999999999999999999999998 9999999999887654 47899999998876 56
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
|++|||.++.. . .. .++.+..+.+++ ++.++ .+++..||.+|+. .
T Consensus 542 TI~eNi~~~~~-~---~~----e~i~~al~~a~l------------------------~~~i~--~lp~G~dt~ige~-G 586 (686)
T TIGR03797 542 SIFENIAGGAP-L---TL----DEAWEAARMAGL------------------------AEDIR--AMPMGMHTVISEG-G 586 (686)
T ss_pred cHHHHHhcCCC-C---CH----HHHHHHHHHcCc------------------------HHHHH--hccccccccccCC-C
Confidence 99999998632 0 00 111111111111 11111 2566789999965 5
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
.+||||||||++||||++.+|++++||||||+||+.+..++.+.|+++ ++ |+++++|.. +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~-T~IiItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KV-TRIVIAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CC-eEEEEecCh-HHHHcCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999874 34 445566665 456779999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
+++++|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998863
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=313.93 Aligned_cols=213 Identities=22% Similarity=0.277 Sum_probs=169.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC--CceeeEEEECCccCCCC-----CccceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS--LKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 209 (1326)
..+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++... ..++.++|++|+..+
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 46899999999999999999999999999999999999874 12479999999876321 124569999999887
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++ +||+||+.+.....+... .. +....+..+++.+|+.+..+.. -
T Consensus 100 ~~-~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~-~ 144 (261)
T PRK14258 100 FP-MSVYDNVAYGVKIVGWRP---------KL------------------------EIDDIVESALKDADLWDEIKHK-I 144 (261)
T ss_pred Cc-ccHHHHHHHHHHhcCCCc---------HH------------------------HHHHHHHHHHHHcCCcchhhhH-h
Confidence 77 899999988643221100 00 0112345677888875422211 1
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.++||+|++
T Consensus 145 ~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~-~~~tiiivsH~~~~i~~~~d~i~~ 223 (261)
T PRK14258 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR-SELTMVIVSHNLHQVSRLSDFTAF 223 (261)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhcCEEEE
Confidence 3456689999999999999999999999999999999999999999999987543 345666788999999999999999
Q ss_pred ecC-----CeEEEEcChhhHH
Q 046656 370 LSD-----GQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~-----G~iv~~G~~~~~~ 385 (1326)
|++ |+++++|+++++.
T Consensus 224 l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 224 FKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EccCCCcCceEEEeCCHHHHH
Confidence 999 9999999999874
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=312.18 Aligned_cols=212 Identities=18% Similarity=0.277 Sum_probs=164.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCC-----CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 208 (1326)
.+++|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|.++... ..++.++|++|++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 3569999999999999999999999999999999999865 3211389999999877421 12357999999988
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++ .||+||+.+.....+.... +. ....+...++.+|+.......
T Consensus 97 ~~~-~tv~~nl~~~~~~~~~~~~-----~~----------------------------~~~~~~~~l~~~~l~~~i~~~- 141 (252)
T PRK14255 97 PFP-FSIYENVIYGLRLAGVKDK-----AV----------------------------LDEAVETSLKQAAIWDEVKDH- 141 (252)
T ss_pred cCC-CcHHHHHHHHHHHcCCCCH-----HH----------------------------HHHHHHHHHHHcCCccchhhH-
Confidence 787 7999999986543221100 00 001123445566653211111
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
-+..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .++++++|+..++.+.+|+|+
T Consensus 142 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 142 LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCCEEE
Confidence 1244568999999999999999999999999999999999999999999999753 3 566668899999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|++.++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 219 FFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=316.07 Aligned_cols=205 Identities=21% Similarity=0.271 Sum_probs=169.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCC-CCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDV-HIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 212 (1326)
..+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999987 999999998875422 2457999999963 6778
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||.||+.++....+.. +. +....++.+++.+||....++ .
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~-----~ 137 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------RE------------------------EMIKRVDEALLAVNMLDFKTR-----E 137 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhC-----C
Confidence 89999998864321110 00 011235677888999876554 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.+++++.. .+++|+.++|+.+++. .+|+|++|++
T Consensus 138 ~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK-YQLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 5679999999999999999999999999999999999999999999988653 2556666888888876 6999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=287.92 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=185.6
Q ss_pred hhcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc---ceEEEEc
Q 046656 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ---RTAAYIS 204 (1326)
Q Consensus 128 ~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~ 204 (1326)
.++++.++++.+|+|+|..+++|.+|+++|||||||||||.+++.+++.+ +|+|+++|.++.....+ +.++..-
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999988 99999999998766543 5678888
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|+...--.+||+|-+.|+.--..-| | +. .+....+++.++.++|++..
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPYSqG-R------lt-------------------------~eD~~~I~~aieyl~L~~l~ 129 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPYSQG-R------LT-------------------------KEDRRIINEAIEYLHLEDLS 129 (252)
T ss_pred hhchhhheeEHHHHhhcCCCcccCC-C------Cc-------------------------hHHHHHHHHHHHHhcccchH
Confidence 9877778899999999974321111 0 00 11234577889999998877
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
| ++...||||||||.-||..++.+.+.++||||.+.||-..+.++++.|+++++..++|+|+ +.|+-..+..++
T Consensus 130 d-----ryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~Ys 203 (252)
T COG4604 130 D-----RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYS 203 (252)
T ss_pred H-----HhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhh
Confidence 6 5566899999999999999999999999999999999999999999999999988777666 678888888999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|+-|++|+++.+|+++++.
T Consensus 204 D~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 204 DHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred hheeeecCCEEEecCCHHHhc
Confidence 999999999999999999986
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=318.08 Aligned_cols=210 Identities=19% Similarity=0.327 Sum_probs=165.5
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--C---CCceeeEEEECCccCCCC-----CccceEEEEc
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--S---SLKVSGRVTYNGHDMNEF-----VPQRTAAYIS 204 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~---~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~ 204 (1326)
..+.+|+|+|+.|++|++++|+|||||||||||++|+|..+ | + +|+|.++|.++... ..++.++|++
T Consensus 50 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~ 126 (286)
T PRK14275 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVF 126 (286)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEEC
Confidence 34569999999999999999999999999999999999854 3 5 89999999876432 1245799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|++.+++. ||+||+.++....+.... ......++.+++.+|+....
T Consensus 127 q~~~l~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l 172 (286)
T PRK14275 127 QKPNPFPK-SIFDNIAYGPRLHGINDK---------------------------------KQLEEIVEKSLRKAALWDEV 172 (286)
T ss_pred CCCCCCcc-CHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHhCCccch
Confidence 99887774 999999986543211000 00111234556777764210
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
.. .-+..+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. +.+|++++|+.+++.+++
T Consensus 173 ~~-~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~ 248 (286)
T PRK14275 173 SD-RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASRVS 248 (286)
T ss_pred hh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhC
Confidence 00 01245668999999999999999999999999999999999999999999998743 356777899999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|++++|++|+++..|+.+++.
T Consensus 249 d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 249 DYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=280.33 Aligned_cols=204 Identities=23% Similarity=0.320 Sum_probs=174.0
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc----------------ccccce
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ----------------ETFTRI 896 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~ 896 (1326)
+...+|++||++.+.|+++.|+|.|||||||+|++|.-+.+ +..|.|.++|..+.. ...+..
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 44679999999999999999999999999999999998776 568999999975321 112335
Q ss_pred EEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 046656 897 SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVEL 976 (1326)
Q Consensus 897 ~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL 976 (1326)
.|+|+|+..++..+||.||+.-... . -...++.+..++.+..|..+|+.+.+|.... .|||||+||++|||||
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPv-h-VLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQR~aIARaL 167 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPV-H-VLGVSKAEAIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQRVAIARAL 167 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcch-H-hhcCCHHHHHHHHHHHHHHhCchhhhhcCcc-----ccCchHHHHHHHHHHH
Confidence 7999999999999999999975321 1 1235667777889999999999998887653 5999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 977 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 977 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
+.+|++++.|||||.|||+-.-.+.+.+++++++|+|++++||.... .-+...++++|.+ |.+-..||+
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P 236 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPP 236 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCCh
Confidence 99999999999999999999999999999999999999999998653 3445689999986 799999987
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=314.96 Aligned_cols=215 Identities=15% Similarity=0.277 Sum_probs=164.3
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEECCccCCCC-----CccceEEEEcc
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQ 205 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q 205 (1326)
+++.+.+|+|+|+++++|++++|+|+|||||||||++|+|.++ |....+|+|.++|.++... ..++.++|++|
T Consensus 33 ~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 112 (271)
T PRK14238 33 WYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQ 112 (271)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEec
Confidence 3334569999999999999999999999999999999999986 2111389999999887421 12457999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
++.+++ .||+||+.++.+..+... + + .....++..++.+++.....
T Consensus 113 ~~~~~~-~tv~eni~~~~~~~~~~~------~--~-------------------------~~~~~~~~~l~~~~~~~~l~ 158 (271)
T PRK14238 113 KPNPFP-KSIYDNVTYGPKIHGIKD------K--K-------------------------TLDEIVEKSLRGAAIWDELK 158 (271)
T ss_pred CCcccc-ccHHHHHHHHHHhcCCCc------H--H-------------------------HHHHHHHHHHHHcCCcchHH
Confidence 988776 599999998654321100 0 0 00111233444444321111
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
... +..+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.. + .+|+.++|+.+++.+++|
T Consensus 159 ~~~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~i~~~~d 234 (271)
T PRK14238 159 DRL-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--D-YSIIIVTHNMQQAARISD 234 (271)
T ss_pred HHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--C-CEEEEEEcCHHHHHHhCC
Confidence 111 245668999999999999999999999999999999999999999999998743 3 567778899989999999
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
++++|++|++++.|+.+++.
T Consensus 235 ~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 235 KTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=314.82 Aligned_cols=196 Identities=26% Similarity=0.370 Sum_probs=155.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|+..+++ .|
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 90 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DT 90 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-ch
Confidence 359999999999999999999999999999999999876 468999999987532 234567999999987775 69
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL-------VGLPGESGLSTEQRKRLTIAVELVANPSIIF 984 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------vg~~~~~~LSgGqrqrl~ia~aL~~~p~ill 984 (1326)
++||+.+... ..... .+++.++..++.+..+.+ ... ....||+|||||++|||+|+.+|++|+
T Consensus 91 v~~nl~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 91 IGYNIRYGRP-----DATDE----EVIEAAKAAQIHDKIMRFPDGYDTIVGE-RGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred HHHHHhhcCC-----CCCHH----HHHHHHHHcCcHHHHHhccccccchhhc-CCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999987431 11111 133344444443322211 111 134799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 985 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 985 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|||||+|||+.+...+.+.|+++.+ |.|||+++|+++ .+ ..+|++++|++ |++++.|+.
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~i~~~~~~ 219 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GRIVERGTH 219 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEeeCCH
Confidence 9999999999999999999999876 999999999986 34 45999999986 688888764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=315.58 Aligned_cols=253 Identities=23% Similarity=0.327 Sum_probs=203.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+++++++..++ ...+++|||++|++||+.||+|.|||||||||++|.|... +.+|+|.++|++.
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 467778776653 4679999999999999999999999999999999999987 5699999999976
Q ss_pred Cc----ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 046656 889 KQ----ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST 964 (1326)
Q Consensus 889 ~~----~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg 964 (1326)
.- ...+.-+|.|.|+..+.+++||.||+..+..-......+.+...++++++.+..||.--.|..++ .||.
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 42 22345689999999999999999999987543222344566677789999999999877788875 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEE
Q 046656 965 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044 (1326)
Q Consensus 965 Gqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~ 1044 (1326)
||||||.|-++|.++|++|||||||+-|-|.....+++++++++++|+|||++||... |+.+.+||+-+|.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999997 89999999999986 677655
Q ss_pred cC-CCC-ChhhHHHHHhhcCcchhhHHhhhccCcccccCCCCccceEEEecc
Q 046656 1045 GP-LGS-NSSDLISYLQLMPMHVTFIFMKAISGVEKIKDGYNPATWMLEVTS 1094 (1326)
Q Consensus 1045 G~-~~~-~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~npa~~~l~v~~ 1094 (1326)
-+ ..+ ..+++.+--- |..+. .+.-.+...|.++.|+|-+
T Consensus 222 ~~~~~~~t~~ela~lMv--G~~v~---------~~~~~~~~~pg~~vL~V~~ 262 (501)
T COG3845 222 VDPVAETTEEELAELMV--GREVV---------LRVVKPPSTPGEVVLEVED 262 (501)
T ss_pred ecCCCCCCHHHHHHHhc--CCccc---------cccccCCCCCCCeEEEEee
Confidence 54 333 2233332211 22110 0111345678899999865
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=307.14 Aligned_cols=194 Identities=24% Similarity=0.347 Sum_probs=160.3
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSA 920 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~~Tv~E~l~f~~ 920 (1326)
++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.+. ..+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4689999999999999999999999999876 458999999987532 346789999998664 3479999998753
Q ss_pred Hhhc-cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 046656 921 WLRL-RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999 (1326)
Q Consensus 921 ~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~ 999 (1326)
.... .........++.+.++++.+++.+..++.++ .||+|||||++|||+|+.+|++|+|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 2110 0001112234568899999999887777654 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 1000 VMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
+.+.|+++.++|+|||++||+++ ++.+.+|+++++ + |++++.|+..
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999998877999999999986 577889999999 5 7999999863
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=317.91 Aligned_cols=212 Identities=28% Similarity=0.433 Sum_probs=172.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc---ceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ---RTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 212 (1326)
++++|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||.+++.+++. +.+||.||+-.+| .
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF-~ 423 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELF-D 423 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceec-C
Confidence 467999999999999999999999999999999999999987 99999999999887764 7899999976555 5
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
-||.|||. |+. +|.+.+...+++...+ ..| -++.|++.+||.||+.
T Consensus 424 GTIaeNIa---Rf~----------------------~~~d~~kIieAA~lAg-----vHe---lIl~lP~GYdT~iG~~- 469 (580)
T COG4618 424 GTIAENIA---RFG----------------------EEADPEKVIEAARLAG-----VHE---LILRLPQGYDTRIGEG- 469 (580)
T ss_pred CcHHHHHH---hcc----------------------ccCCHHHHHHHHHHcC-----hHH---HHHhCcCCccCccCCC-
Confidence 79999995 221 1111222222222111 112 2456899999999964
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
..+||||||||+++|||++++|.+++||||-|.||+.....+.+.+.+... .++++|+ ++|. +.+...+|+|++|++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvv-iaHR-Ps~L~~~Dkilvl~~ 546 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVV-IAHR-PSALASVDKILVLQD 546 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEE-EecC-HHHHhhcceeeeecC
Confidence 568999999999999999999999999999999999999999999998643 4555554 4553 568899999999999
Q ss_pred CeEEEEcChhhHHHHH
Q 046656 373 GQIVYQGPCELVLDFF 388 (1326)
Q Consensus 373 G~iv~~G~~~~~~~~F 388 (1326)
|++-.+|+++|++...
T Consensus 547 G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 547 GRIAAFGPREEVLAKV 562 (580)
T ss_pred ChHHhcCCHHHHHHHh
Confidence 9999999999998654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1326 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-11 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-10 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-10 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-09 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-09 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-09 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 3e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-07 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 7e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 9e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 5e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 6e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 4e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1326 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-15 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 6e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-12 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 7e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-06 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-21 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-21 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-07 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-21 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-17 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-04 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-07 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-17 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-10 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-16 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-16 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 7e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-12 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-07 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-12 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-08 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-10 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 8e-07 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-10 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-09 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 8e-09 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-05 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-08 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 6e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-08 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 7e-08 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 7e-08 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 5e-05 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-08 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 1e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-04 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-04 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 7e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYP--KKQETF 893
L G+S G + L+G +GAGKTT + +++ + + SG +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV 86
Query: 894 TRISGYC-EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS 952
++ Y E+ + + E L + A S + +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNM-QGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGR 1012
V S ++L IA L+ NP + +DEPTSGLD A V + +K + G
Sbjct: 143 RVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197
Query: 1013 TVVCTIH 1019
T++ + H
Sbjct: 198 TILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 4e-15
Identities = 60/267 (22%), Positives = 93/267 (34%), Gaps = 70/267 (26%)
Query: 132 TKK-KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190
K+ ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G +
Sbjct: 22 RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKN 78
Query: 191 MNE----------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELAR 240
+ E ++P+ AY M E L F A S E+
Sbjct: 79 VVEEPHEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEE 125
Query: 241 REKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300
+ A ++ GL + V S G
Sbjct: 126 MVERA-----------------------------TEIAGL-----GEKIKDRVSTYSKGM 151
Query: 301 KKRLTTGEMMVG-PALALFMDEISNGLDSSTTFHIVNSLRQNIHILN--GTAVISLLQPA 357
++L ++ P L +DE ++GLD + L+Q + G ++
Sbjct: 152 VRKLLIARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQ----ASQEGLTILVSSHNM 206
Query: 358 PETYDLFDDIILLSDGQIVYQG-PCEL 383
E L D I L+ +G IV G EL
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 33/235 (14%)
Query: 821 MPKEMKLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 877
M K + ++ + + + L ++ G + A++G +G GK+TL+D+L G I
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PI 58
Query: 878 SGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL-----YSAWLRLRTEVDSET 932
G I + I G+ Q +V + +L + D +
Sbjct: 59 QGKIEVYQ---------SI-GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108
Query: 933 RKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
+ ++ + L L + + LS QR+ + IA + + +I +DEPTS L
Sbjct: 109 ----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 993 DARAAAIVMRTVKN-TVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046
D IV+ + + TVV T HQP+ + ++ L+ + G
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 41/255 (16%), Positives = 84/255 (32%), Gaps = 64/255 (25%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+ + ++ + G + +LG GK+TLL L G G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
++ ++ Q +V + + G R + A+ + D
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM-----G---RSTHINTFAKPKSH-----D------- 105
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA- 316
A +A L L L A +SGGQ++ + ++ A+A
Sbjct: 106 YQVA---MQA-------LDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 317 ----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISL--LQPAPETYDLFDDIILL 370
+ +DE ++ LD + +++ L N T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 371 SDGQIVYQGPCELVL 385
+ + G +L
Sbjct: 203 NKQNFKF-GETRNIL 216
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 7e-23
Identities = 40/204 (19%), Positives = 80/204 (39%), Gaps = 25/204 (12%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L ++ G + G +G GKTTL+ ++ + G I +G P + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGK 79
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
I + + I ++V + L A L + K I + +E VE+ L++ L
Sbjct: 80 I-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKKL-- 131
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTV 1014
LS +R+ +A L+ N I +D+P +D + V++++ + E G +
Sbjct: 132 ----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 1015 VCTIHQPSIDIFEAFDELFLMKRG 1038
+ + D + +
Sbjct: 188 ISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 1e-14
Identities = 38/255 (14%), Positives = 76/255 (29%), Gaps = 66/255 (25%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
+ +L+ ++ I+ G + GP GKTTLL ++ L G + YNG +
Sbjct: 17 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 73
Query: 192 NE------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEA 245
+ F+P+ +++V + L A GV + K
Sbjct: 74 TKVKGKIFFLPEEIIVP--------RKISVEDYLKAVASLYGV-----------KVNKNE 114
Query: 246 GIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT 305
L+ + + + +S G +R+
Sbjct: 115 -------------------------IMDALESVEVLDLKKK------LGELSQGTIRRVQ 143
Query: 306 TGEMMVG-PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364
++ + +D+ +D + ++ S+ I G +IS + E
Sbjct: 144 LASTLLVNAEI-YVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYC 197
Query: 365 DDIILLSDGQIVYQG 379
D L
Sbjct: 198 DVNENLHKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 35/224 (15%)
Query: 801 MVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLV------LLNGVSGAFRPGVLTALM 854
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 855 GVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV 912
G +G GKTTL+ +LAG + G + +S P+K TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTI 972
+ +R + + F ++++ + + + V LS + +R+ I
Sbjct: 431 RQLFFKK----IRGQFLNP---QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 973 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVV 1015
+ L I +DEP++ LD+ I + ++ + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 35/190 (18%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNIT---ISGYPKKQETFTRISGYC 900
RPG + L+G +G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 901 EQN---------------DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
E + I P+ V E L ++ E ++ +++++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL----------KLRMEKSPEDVKRYIKILQ 210
Query: 946 LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
L+ + + + LS + +R I + V + DEP+S LD + + ++
Sbjct: 211 LENVLKRD---IEK--LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265
Query: 1006 NTVETGRTVV 1015
+ + + V+
Sbjct: 266 SLLAPTKYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-07
Identities = 42/220 (19%), Positives = 69/220 (31%), Gaps = 56/220 (25%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
K + +L G + +++G +GKTTL+ LAG L G+
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 192 NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
+P+ + Q TVR+ R + + + +
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR-----------GQFLNPQFQTDV---- 451
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311
+K L +D D V +SGG+ +R+ +
Sbjct: 452 -----------------------VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI 351
PA +DE S LDS +R+ I TA I
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 43/291 (14%), Positives = 81/291 (27%), Gaps = 93/291 (31%)
Query: 124 FNSIHI--LTTK-KKHLT-------ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173
F++I I L T + H+T +PG++ L+G GK+T L LAG+
Sbjct: 67 FDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK 126
Query: 174 LDSSLKVSGRVTYNG----------------HDMNEFVPQRTAAYISQHDVHIGEMTVRE 217
+L GR + A Q+ +I ++
Sbjct: 127 QKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKG 182
Query: 218 TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKV 277
+ + ++ R K ++ + ++
Sbjct: 183 PVQKVGELLKL-RMEKSPEDVKRYIKILQLEN--------------------VLKRDIEK 221
Query: 278 LGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA-----LFMDEISNGLDSSTTF 332
L SGG+ +R +G + DE S+ LD
Sbjct: 222 L------------------SGGELQRF-----AIGMSCVQEADVYMFDEPSSYLDVKQRL 258
Query: 333 HIVNSLRQNIHILNGTAVISLLQPAPETYDLF------DDIILLSDGQIVY 377
+ +R + + +DL D + ++ VY
Sbjct: 259 NAAQIIRS-LLAPTKYVICV-------EHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 33/230 (14%)
Query: 821 MPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIS- 878
M M+L+ V E L +SG R G + L+G +GAGK+TL+ +AG G I
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 879 GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIE 938
+ + + Y Q V+ L + RTE+ +
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL--------LN 108
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSG 991
++ + L + LS + +R+ +A + ++ +DEP +
Sbjct: 109 DVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 992 LDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
LD + + + + + G +V + H D+ +L+K G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 55/273 (20%), Positives = 86/273 (31%), Gaps = 90/273 (32%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T L +SG ++ G + L+GP +GK+TLL +AG G + + G + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 198 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
+ A AY+SQ V L ++D R E
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL--------HQHDK----TRTE------------ 105
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRL--------TT 306
L + L LD +SGG+ +R+ T
Sbjct: 106 ---------------LLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 307 GEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILN--------GTAVISLLQPAP 358
+ L L +DE N LD + Q + G A++
Sbjct: 146 PQANPAGQL-LLLDEPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS---- 190
Query: 359 ETYDL------FDDIILLSDGQIVYQGPCELVL 385
+DL LL G+++ G E VL
Sbjct: 191 --HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 6e-21
Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 32/228 (14%)
Query: 794 TQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDK---LVLLNGVSGAFRPGVL 850
Q + + F PY + F ++ D+ +E ++ K L G R G +
Sbjct: 325 LQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEV 384
Query: 851 TALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSP 908
++G +G GKTT + +LAG T G + ++T++ K Q I
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------AEY 430
Query: 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968
TVYE L + E+++ + + L + LS + +
Sbjct: 431 EGTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRN---VED--LSGGELQ 478
Query: 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVV 1015
R+ IA L+ + I +DEP++ LD V R +++ +E +T +
Sbjct: 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-13
Identities = 65/350 (18%), Positives = 114/350 (32%), Gaps = 91/350 (26%)
Query: 78 RFDRVGI-ELPKVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKH 136
+ R GI E + ++ E++ +K ++E K
Sbjct: 315 KGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLV------KDYG 368
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
L+ G I+ G + ++GP GKTT + LAG + + G+V ++
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-------- 417
Query: 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
T AY Q+ E TV E +L+++ + +
Sbjct: 418 --TVAYKPQYIKAEYEGTVYE----------------LLSKIDSSKLNSNFYKTEL---- 455
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
LK LG+ D V D +SGG+ +R+ ++ A
Sbjct: 456 ------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADI 492
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTA-VISLLQPAPETYDLF------DDIIL 369
+DE S LD + ++R + TA V+ +D+ D +I+
Sbjct: 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYVSDRLIV 544
Query: 370 LSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQE--VTSRKDQRQY 417
+G+ G + E M FL +T R+D
Sbjct: 545 F-EGEPGRHGRALPPMGMREGM----------NRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 14/186 (7%)
Query: 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYISGNITISGYPKK-- 889
+ + G++ ++G +G GKTT + +LAG+ S + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
Q F R+ + + V + + ++R + EE+++ +EL+ +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKG---KVRELLKKVDEVGKFEEVVKELELENV 221
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009
+ LS + +R+ IA L+ F DEP+S LD R V R ++
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 1010 TGRTVV 1015
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 51/258 (19%), Positives = 80/258 (31%), Gaps = 86/258 (33%)
Query: 124 FNSIHI--LTTK-KKHLT-------ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173
FN+I I L + + + I+K G + ++GP +GKTT + LAGQ
Sbjct: 81 FNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ 140
Query: 174 LDSSL---KVSGRVTYNGHDMNEFVPQRTAAYI--------SQHDVHIGEMT---VRETL 219
L +L S NE Q+ + + VRE L
Sbjct: 141 LIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL 200
Query: 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG 279
+ D + + KE ++ + D L L
Sbjct: 201 ----------KKVDEVGKFEEVVKELELEN--------------------VLDRELHQL- 229
Query: 280 LDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA-----LFMDEISNGLDSSTTFHI 334
SGG+ +R+ + AL F DE S+ LD +
Sbjct: 230 -----------------SGGELQRV-----AIAAALLRKAHFYFFDEPSSYLDIRQRLKV 267
Query: 335 VNSLRQNIHILN-GTAVI 351
+R + N G AV+
Sbjct: 268 ARVIR---RLANEGKAVL 282
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 6e-21
Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 41/265 (15%)
Query: 789 GVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPG 848
G G+V + D + + +L +S G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMLIQLDQIG-------------RMKQGKTILKKISWQIAKG 47
Query: 849 VLTALMGVSGAGKTTLMDVLAGR--KTGGYISGNITISGYPKKQETFT------RISGYC 900
L G++GAGKTTL+++L T SG + + G + ++ I G+
Sbjct: 48 DKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYSAETVRQHI-GFV 102
Query: 901 EQ---NDIHSPLVTVYESLL--YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVG 955
V + ++ + + ++D E R ++++LV + Q +G
Sbjct: 103 SHSLLEKFQEGE-RVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQYIG 160
Query: 956 LPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK--NTVETGRT 1013
LST +++R+ IA L+ P ++ +DEP +GLD A ++ + +
Sbjct: 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLA 215
Query: 1014 VVCTIHQPSIDIFEAFDELFLMKRG 1038
++ H +I F ++ L+K G
Sbjct: 216 MIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 5e-17
Identities = 59/270 (21%), Positives = 90/270 (33%), Gaps = 75/270 (27%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE---- 193
TILK +S I G +L G +GKTTLL L SG V G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYS 91
Query: 194 ---------FVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKE 244
FV + V + + S + +G Y + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEG------ERVIDVVI-SGAFKSIG-VYQDIDDEIRN--- 140
Query: 245 AGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRL 304
LK++G+ A +G +S G+K+R+
Sbjct: 141 -------------------------EAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRV 170
Query: 305 TTGEMMVGPALA-----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISL----LQ 355
M+ AL L +DE + GLD +++ L A+I ++
Sbjct: 171 -----MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIE 224
Query: 356 PAPETYDLFDDIILLSDGQIVYQGPCELVL 385
F I+LL DGQ + QG E +L
Sbjct: 225 EITA---NFSKILLLKDGQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 33/207 (15%)
Query: 847 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYISGNITISGYPKKQETFTRISGYCEQNDI 905
G ++G +G+GKTTL+ ++G SGNI I+G + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 906 HSPL-VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP--LRQSLVGLPGESGL 962
+ VTV + + L+ + E+++ ++L LR+ + L
Sbjct: 83 AYEIGVTVNDIVYLY--EELK-----GLDRDLFLEMLKALKLGEEILRRK----LYK--L 129
Query: 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022
S Q + ++ L + P I+ +DEP +DA ++ R +K E G+ + H
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH--- 183
Query: 1023 IDIFEAF---DELFLMKRGGQEIYVGP 1046
++ + G +
Sbjct: 184 -ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 42/261 (16%), Positives = 83/261 (31%), Gaps = 83/261 (31%)
Query: 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN 192
K L++++ + G ++LGP SGKTTLL A++G L SG + NG ++
Sbjct: 14 KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVR 68
Query: 193 EFVPQ-RTAAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPD 250
+ R + + + ++ +TV + + +G+ E
Sbjct: 69 KIRNYIRYSTNLPEAYEIG---VTVNDIVYLYEELKGLDR---------DLFLEM----- 111
Query: 251 LFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMM 310
LK L L + + + +S GQ
Sbjct: 112 ------------------------LKALKLG---EEI-LRRKLYKLSAGQSVL------- 136
Query: 311 VGPALAL-------FMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD- 362
V +LAL +DE +D++ I +++ ++ T++
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE----YGKEGILV-------THEL 185
Query: 363 -----LFDDIILLSDGQIVYQ 378
+ G +
Sbjct: 186 DMLNLYKEYKAYFLVGNRLQG 206
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-19
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 32/219 (14%)
Query: 803 LPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKL---VLLNGVSGAFRPGVLTALMGVSGA 859
+ F PY + F ++ +E + K L G + G + ++G +G
Sbjct: 264 VRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGI 323
Query: 860 GKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917
GKTT + +LAG T G I ++T++ K Q I TVYE L
Sbjct: 324 GKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----YIK--------ADYEGTVYELLS 369
Query: 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV 977
+ E+++ + + L E LS + +R+ IA L+
Sbjct: 370 KIDA-------SKLNSNFYKTELLKPLGIIDLYDRE---VNE--LSGGELQRVAIAATLL 417
Query: 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVV 1015
+ I +DEP++ LD V R +++ +E +T +
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-12
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 24/181 (13%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYISGNITISGYPKK--QETFTRISGY 899
+ G++ ++G +G GK+T + +LAG+ G S + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 900 CEQNDIH----SPLVTVYESLL-YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV 954
+I V L+ + ++ + +EE+++ +EL+ + + +
Sbjct: 104 ---GEIRPVVKPQYV----DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI 156
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1014
LS + +R+ IA L+ N + F DEP+S LD R R ++ E G++V
Sbjct: 157 -----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV 211
Query: 1015 V 1015
+
Sbjct: 212 L 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-09
Identities = 62/347 (17%), Positives = 114/347 (32%), Gaps = 91/347 (26%)
Query: 81 RVGI-ELPKVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTI 139
R GI E + ++ E++ +K ++ K
Sbjct: 248 RNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPR------LVKDYGSFR 301
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
L+ G IK G + ++GP GKTT + LAG + + G++ ++ + PQ
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLT--VAYKPQ-- 354
Query: 200 AAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
YI E TV E +L+++ + + ++
Sbjct: 355 --YIKAD----YEGTVYE----------------LLSKIDASKLNSNFYKT---EL---- 385
Query: 260 AATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFM 319
LK LG+ D V + +SGG+ +R+ ++ A +
Sbjct: 386 ---------------LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLL 425
Query: 320 DEISNGLDSSTTFHIVNSLRQNIHILNGTA-VISLLQPAPETYDLF------DDIILLSD 372
DE S LD + ++R + TA V+ +D+ D +++ +
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYVSDRLMVF-E 476
Query: 373 GQIVYQGPCELVLDFFESMGFKCPERKSVADFLQE--VTSRKDQRQY 417
G+ G + E M FL +T R+D
Sbjct: 477 GEPGKYGRALPPMGMREGMN----------RFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 46/290 (15%), Positives = 85/290 (29%), Gaps = 97/290 (33%)
Query: 124 FNSIHILTTK--KKHLT-------ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174
+ + ++ + ++K G + ++GP +GK+T + LAGQL
Sbjct: 12 SGLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL 71
Query: 175 DSSL---KVSGRVTYNGHDMNEFVPQRTAAYI--------SQHDVHIGEMT---VRETLA 220
+L S NE Q+ I + V E L
Sbjct: 72 IPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL- 130
Query: 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL 280
+ D +L K ++ + + ++ L
Sbjct: 131 ---------KKADETGKLEEVVKALELEN--------------------VLEREIQHL-- 159
Query: 281 DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA-----LFMDEISNGLDSSTTFHIV 335
SGG+ +R+ + AL F DE S+ LD +
Sbjct: 160 ----------------SGGELQRV-----AIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 336 NSLRQNIHILN-GTAVI------SLLQPAPETYDLFDDIILLSDGQIVYQ 378
++R + G +V+ ++L L D I ++ VY
Sbjct: 199 RAIR---RLSEEGKSVLVVEHDLAVLD------YLSDIIHVVYGEPGVYG 239
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 9e-18
Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 27/237 (11%)
Query: 784 HSKNSGVVRATQPKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSG 843
++ G + A K R + F ++ D++ + K + + L +G
Sbjct: 231 NNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWT-KIIKKLGDFQLVVDNG 289
Query: 844 AFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCE 901
+ G + ++G +G GKTT +L G G ++ I Y K Q F
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP------- 341
Query: 902 QNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961
+ TV + +L ++ T F EE+ + + L L +S V +
Sbjct: 342 -----NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----ND 385
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTI 1018
LS + ++L IA L + +D+P+S LD IV + +K + V I
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-12
Identities = 37/182 (20%), Positives = 74/182 (40%), Gaps = 17/182 (9%)
Query: 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDI 905
+ + ++G +G GKTT++ +LAG + N K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRG----KEI 74
Query: 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG---- 961
++ +Y + L E S+ K + EI+ ++ + + + L +
Sbjct: 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNK 134
Query: 962 ----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1017
LS +RL +A L+ + D+P+S LD R + + ++ ++ + V+
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVV 193
Query: 1018 IH 1019
H
Sbjct: 194 DH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-09
Identities = 54/295 (18%), Positives = 95/295 (32%), Gaps = 82/295 (27%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
KK L +G K G + +LGP GKTT L G++ + G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 192 NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
+Y Q + TV++ L +++ + + E+
Sbjct: 333 ---------SYKPQRIFPNYDGTVQQYLENASK-DALSTSSWFFEEV------------- 369
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311
K L L ++ V D +SGG+ ++L +
Sbjct: 370 -----------------------TKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTA-VISLLQPAPETYDLF------ 364
A +D+ S+ LD + + ++++ +I +DL
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHDYIA 453
Query: 365 DDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQE--VTSRKDQRQY 417
D II+ G+ G + M +FL+E VT R+D
Sbjct: 454 DRIIVF-KGEPEKAGLATSPVTLKTGM----------NEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-07
Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 60/256 (23%)
Query: 140 LKDVS-GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNEFVPQ 197
K K + +LG GKTT+L LAG++ + + +V + + F +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD-EVLKRFRGK 72
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
Y + + L + Q + ++ + +
Sbjct: 73 EIYNYFKE------LYSN--ELKIVHKIQ----YVEYASKFLKGTVNEIL---------- 110
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA- 316
+ D ++L + + ++ +SGG +RL +V +L
Sbjct: 111 -----TKIDERGKKDEVKELLNMT-----NLWNKDANILSGGGLQRL-----LVAASLLR 155
Query: 317 ----LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI------SLLQPAPETYDLFDD 366
D+ S+ LD ++ ++R+ +L VI +L L D
Sbjct: 156 EADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVLD------YLTDL 206
Query: 367 IILLSDGQIVYQGPCE 382
I ++ VY +
Sbjct: 207 IHIIYGESSVYGRVSK 222
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 4e-17
Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 63/253 (24%)
Query: 809 SLTFDDV--TYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 866
+ +V + P E K L VS G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 867 VLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSP---LV--TVYESLLYS 919
++AG T SG++ G KK R G Q P V++
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQY----PEDQFFAERVFD----- 98
Query: 920 AWLRLRTEVDSETRKMF-------IEEIMELVELKPLRQSLVGLPGES-------GLSTE 965
EV F + + LV+ K + VGL +S LS
Sbjct: 99 -------EV------AFAVKNFYPDRDPVPLVK-KAME--FVGLDFDSFKDRVPFFLSGG 142
Query: 966 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDI 1025
+++R+ IA +V P I+ +DEP GLD ++R V+ G+TV+ H +
Sbjct: 143 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TV 201
Query: 1026 FEAFDELFLMKRG 1038
D + ++++G
Sbjct: 202 INHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 53/256 (20%), Positives = 95/256 (37%), Gaps = 62/256 (24%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
L++VS +I G L+ G SGK+TLL +AG ++ + SG V Y+G + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 200 AAYISQH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
Q+ + V + +AF+ + + K+A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA------------- 120
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA-- 316
++ +GLD + D + +SGG+K+R+ A+A
Sbjct: 121 ----------------MEFVGLDFDS---FKDRVPFFLSGGEKRRV---------AIASV 152
Query: 317 -------LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369
L +DE GLD ++ + + G VI + + D +++
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHVDRVVV 210
Query: 370 LSDGQIVYQGPCELVL 385
L G+ V+ G L
Sbjct: 211 LEKGKKVFDGTRMEFL 226
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 30/217 (13%)
Query: 826 KLKGVH------EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-Y 876
KLK V E+ + L V+ + G ++MG SG+GK+T+++++ + T G
Sbjct: 3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
Query: 877 ISGNITISGYPKKQETFTR---ISGYCEQ--NDIHSPLVTVYES----LLYSAWLRLRTE 927
NI + + T R I G+ Q N I PL+T E+ L++ + R
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIF----KYRGA 115
Query: 928 VDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987
+ E R+ E +++ EL+ + P + LS Q++R+ IA L NP II D+
Sbjct: 116 MSGEERRKRALECLKMAELEERFANH--KPNQ--LSGGQQQRVAIARALANNPPIILADQ 171
Query: 988 PTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQPSI 1023
PT LD++ +M+ +K E G+TVV H ++
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 5e-16
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 29/217 (13%)
Query: 821 MPKEMKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG- 875
M + ++ + + + +L G+S + + G +++G SG+GK+TL+ +L T G
Sbjct: 1 MAEILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK 60
Query: 876 YISGNITISGYPKKQETFTR---ISGYCEQ--NDIHSPLVTVYES----LLYSAWLRLRT 926
+ +K+ + R + G+ Q I P +T E+ +L
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKL-GFVFQFHYLI--PELTALENVIVPMLKM------- 110
Query: 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986
+ K E ++ + L P E LS +++R+ IA L P ++F D
Sbjct: 111 GKPKKEAKERGEYLLSELGLGDKLSRK---PYE--LSGGEQQRVAIARALANEPILLFAD 165
Query: 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
EPT LD+ VM E G ++V H+ +
Sbjct: 166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 54/245 (22%)
Query: 821 MPKEM-KLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG 874
+ + K++ ++ D L G++ + G +TA++G +G GK+TL G + +
Sbjct: 3 LEDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS- 61
Query: 875 GYISGNITISGYP--KKQETFTRIS---GYCEQNDIHSP---LV--TVYESLLYSAWLRL 924
SG I P ++ ++ G Q+ P L +VY+
Sbjct: 62 ---SGRILFDNKPIDYSRKGIMKLRESIGIVFQD----PDNQLFSASVYQ---------- 104
Query: 925 RTEV----------DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAV 974
+V + E RK ++ ++ ++ L+ LS Q+KR+ IA
Sbjct: 105 --DVSFGAVNMKLPEDEIRKR-VDNALKRTGIEHLKDKP---THC--LSFGQKKRVAIAG 156
Query: 975 ELVANPSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQPSIDIFEAFDELF 1033
LV P ++ +DEPT+GLD + +M+ + E G T++ H + D +F
Sbjct: 157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVF 215
Query: 1034 LMKRG 1038
+MK G
Sbjct: 216 VMKEG 220
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 55/288 (19%), Positives = 103/288 (35%), Gaps = 74/288 (25%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRT 199
LK ++ IK G +T +LG GK+TL G L S SGR+ ++ ++ ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 200 AAYISQH--------DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
+ + D + +V + ++F A + E+ +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311
LK G++ D +S GQKKR+
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 312 GPALA---------LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD 362
A+A L +DE + GLD I+ L + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 363 LFDDIILLSDGQIVYQGPCELVL---DFFESMGFKCPERKSVADFLQE 407
D++ ++ +G+++ QG + V + + + P + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 3e-13
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 37/203 (18%)
Query: 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQ- 890
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 891 ------ETFTRISGYCEQNDIHS-PLVTVYE-----------SLLYSAWLRLRTEVDSET 932
TF Q +TV E S L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 933 RKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
+ +I+E ++L L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 993 DARAAAIVMRTVKNTVETGRTVV 1015
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 7e-11
Identities = 50/194 (25%), Positives = 72/194 (37%), Gaps = 43/194 (22%)
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 197 QRTAAY-IS---QHDVHI-GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
Y I Q EMTV E L C G + + ++E
Sbjct: 77 AELYHYGIVRTFQT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------ 129
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE--- 308
M A + L+ L L D G+ +SGGQ K + E
Sbjct: 130 -----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGR 166
Query: 309 -MMVGPALALFMDE 321
+M P + + MDE
Sbjct: 167 ALMTNPKM-IVMDE 179
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 6e-13
Identities = 80/590 (13%), Positives = 170/590 (28%), Gaps = 167/590 (28%)
Query: 30 EDDEKEALKWAAHEKLPSLGLQERQ--RLIDKLVKVTDVDNEKFM---LKLRYRF--DRV 82
+D K L + + RL L+ + +KF+ L++ Y+F +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 83 GIELPKVEVRYEHLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILTTKKKHLTILKD 142
E + + + + F + + ++ + ++ L L+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPY-------LKLRQALLELRP 149
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTL-----------------------------------L 167
++ + G SGKT + L
Sbjct: 150 AKNVL-------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 168 LALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH----------DVHIGEMTVRE 217
L Q+D + + N + + +V +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWN- 260
Query: 218 TLAFSARCQG-VGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLK 276
AF+ C+ + +R+ +T+ I D T + ++L LK
Sbjct: 261 --AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSLL----LK 309
Query: 277 VLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGP-ALALFMDEISNGLDSSTTFHIV 335
L L E++ P L++ + I +GL + + V
Sbjct: 310 YLDCRP--QDL-PREVLTT----------------NPRRLSIIAESIRDGLATWDNWKHV 350
Query: 336 NSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG--------QIVYQGP----CEL 383
N + I+ + +++L+PA E +FD + + +++ +
Sbjct: 351 NCDKLT-TIIESS--LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 384 VLDFFE--SMGFK--CPERKSVADFLQEVTSRKDQR---------QYWVHREMP------ 424
V++ S+ K S+ E+ + + Y + +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 425 -------YRFI-----------TVQEFSEAFQSFH-VGQKLTDELRTPLDKSKSHPAALT 465
Y I + F F F + QK+ + T + S S L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 466 T----KGYGVGMKELFKANIS--REFLLIKRNSFVYIFK---LIQLSTMA 506
K Y ++ ++ +FL K + K L++++ MA
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLP-KIEENLICSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 7e-13
Identities = 73/444 (16%), Positives = 126/444 (28%), Gaps = 146/444 (32%)
Query: 744 TFLNQFEKPQAVILEES-ESNY--LDNRI-----GGTIQLSTYGSNSSHSKNSGVVRATQ 795
T L++ E+ +EE NY L + I ++ Y + +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IEQRDRLYNDNQ--- 124
Query: 796 PKKRGMVLPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMG 855
F Y+++ +L+ + + LL RP + G
Sbjct: 125 --------VFAKYNVS--------------RLQPYLKLRQALLE-----LRPAKNVLIDG 157
Query: 856 VSGAGKTTL-MDVLAGRKTGGYISGNI---TISGYPKKQETFTRISGYCEQNDIHSPLVT 911
V G+GKT + +DV K + I + ET + + +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEM-----LQKLLYQIDP 211
Query: 912 VYESLL-YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRL 970
+ S +S+ ++LR E+ L++ KP L+ L
Sbjct: 212 NWTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYENCLLVLLN------------ 252
Query: 971 TIAVELVANPSII--FMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA 1028
V N F L + I++ T V + T H
Sbjct: 253 ------VQNAKAWNAF------NLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 1029 FDE-----LFLMKRGGQEIYVGPLGSNSSDL-ISYLQLMPMHVTFIFMKAISGVEKIKDG 1082
L L L DL L P ++ I E I+DG
Sbjct: 298 LTPDEVKSLLLKY----------LDCRPQDLPREVLTTNPRRLSII-------AESIRDG 340
Query: 1083 YNPATWMLEVTSTTKELALGIDFTNIYKHSDLYRRNKAL---IEELSKPAPDSQDIY--- 1136
ATW D +KH + + + + L +PA + + ++
Sbjct: 341 --LATW---------------DN---WKHVNCDKLTTIIESSLNVL-EPA-EYRKMFDRL 378
Query: 1137 --FP--TWYSRSFFMQFLACLWKQ 1156
FP L+ +W
Sbjct: 379 SVFPPSAHIP----TILLSLIWFD 398
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-09
Identities = 75/547 (13%), Positives = 162/547 (29%), Gaps = 141/547 (25%)
Query: 656 FVLSQDDINNGWIWGYWCSPMMYAQNAIVANEFFGHSWRKFTTNSTESLG---------V 706
FV IN ++ SP+ Q R N +
Sbjct: 82 FVEEVLRINYKFLM----SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 707 QVLKS--RGFFPHAFWYWIGLGAMIGF---VL----LFNIGFTLSLTF------LNQFEK 751
L+ P + + ++G + + + F L
Sbjct: 138 LKLRQALLELRPAK---NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 752 PQAVILEESESNYLDNRIGGTIQLSTYGSNSSHSKNSGVVRATQPKKRGMVLPFEPYS-- 809
P+ +LE + T S + SN +S Q + R +L +PY
Sbjct: 195 PET-VLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHS-----IQAELR-RLLKSKPYENC 246
Query: 810 -LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----L 864
L +V ++ AF L+ TT +
Sbjct: 247 LLVLLNV----------------QNAKAW-----NAFNLSCKI-LL-------TTRFKQV 277
Query: 865 MDVLAGRKTGGYISGNITISGYPKKQ--ETFTRISGYCEQNDI------HSPLV--TVYE 914
D L+ T +IS + + + C D+ +P + E
Sbjct: 278 TDFLSAATT-THISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAE 335
Query: 915 SL-----LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKR 969
S+ + W + + + + + + E E + + L P + + T
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPT---IL 391
Query: 970 LTIA-VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA 1028
L++ +++ + ++ +++ + + + + ++T +I +++
Sbjct: 392 LSLIWFDVIKSDVMVVVNK-----LHKYSLVEKQPKEST--------ISIPSIYLELKVK 438
Query: 1029 FDELFLMKRGGQEIYVGPLGSNSSDLI---------SYL-------------QLMPM-HV 1065
+ + + R + Y P +S DLI S++ L M +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 1066 TFIFMKAISGVEKIKDGYNPATWMLEVTSTTKELALGIDFTNIYKHSDLY-RRNKALIEE 1124
F F++ KI+ + +T ++L + I + Y R A+++
Sbjct: 499 DFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKFYKPY--ICDNDPKYERLVNAILDF 551
Query: 1125 LSKPAPD 1131
L K +
Sbjct: 552 LPKIEEN 558
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 65/256 (25%), Positives = 105/256 (41%), Gaps = 56/256 (21%)
Query: 803 LPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 862
L F+ + F++V +S + D L VS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFS------------YADGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 863 TLM-------DVLAGRKTGGYISGNITISGYPKK---QETFTRISGYCEQ-----NDIHS 907
T++ D+ +G I I G Q + G Q ND
Sbjct: 95 TILRLLFRFYDISSGC---------IRIDGQDISQVTQASLRSHIGVVPQDTVLFND--- 142
Query: 908 PLVTVYESLLYSAWLRLRTEVDSETRKMFIEE-IMELVELKPLR-QSLVGLPGESG--LS 963
T+ +++ Y EV++ + I + IM P ++ V GE G LS
Sbjct: 143 ---TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF----PEGYRTQV---GERGLKLS 192
Query: 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023
+++R+ IA ++ P II +DE TS LD + ++ V RT + H+ S
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTIVVAHRLST 251
Query: 1024 DIFEAFDELFLMKRGG 1039
+ A D++ ++K G
Sbjct: 252 -VVNA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 67/262 (25%), Positives = 109/262 (41%), Gaps = 79/262 (30%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF--- 194
L+DVS + PG+ L+GP +GK+T+L L D S SG + +G D+++
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124
Query: 195 --------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAG 246
VPQ T + +D T+ + + + R + D + A+ AG
Sbjct: 125 SLRSHIGVVPQDTVLF---ND------TIADNIRY-GRV---TAGNDEVEAAAQA---AG 168
Query: 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG--ISGGQKKRL 304
I I F EG Y T VG+ RG +SGG+K+R+
Sbjct: 169 I--HDAIMAF-----PEG---------Y----------RTQVGE---RGLKLSGGEKQRV 199
Query: 305 TTGEMMV-GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVI----SLLQPA 357
++ P + + +DE ++ LD+S I SL + + T V+ S + A
Sbjct: 200 AIARTILKAPGI-ILLDEATSALDTSNERAIQASLAK---VCANRTTIVVAHRLSTVVNA 255
Query: 358 PETYDLFDDIILLSDGQIVYQG 379
D I+++ DG IV +G
Sbjct: 256 -------DQILVIKDGCIVERG 270
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 43/244 (17%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
++ F DV +S + L ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 869 AGRKTGGY-ISGNITISGYPKK---QETFTRISGYCEQ-----NDIHSPLVTVYESLLYS 919
R Y G+I I G + + I G Q N+ T+ ++LY
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG 116
Query: 920 AWLRLRTEVDSETRKMFIEE-IMELVELKPLR-QSLVGLPGESG--LSTEQRKRLTIAVE 975
EV T+ + + I L P + ++V G G LS +R+R+ IA
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEAL----PKKWDTIV---GNKGMKLSGGERQRIAIARC 169
Query: 976 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035
L+ +P I+ DE TS LD++ + + V++ + RT++ H+ S I A + + L+
Sbjct: 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILL 226
Query: 1036 KRGG 1039
+G
Sbjct: 227 NKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 56/276 (20%), Positives = 104/276 (37%), Gaps = 80/276 (28%)
Query: 124 FNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGR 183
F+ ++ K+ + LK ++ I G L+G SGK+T+ L D G
Sbjct: 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD----AEGD 75
Query: 184 VTYNGHDMNEF-----------VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRY 232
+ G ++N++ VPQ D + T++ + + G
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQ---------DTILFNETIKYNILY-------GKLD 119
Query: 233 DMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292
E+ + K A + FI L + DT+VG+
Sbjct: 120 ATDEEVIKATKSAQL--YDFI---EA-----------LPKKW----------DTIVGN-- 151
Query: 293 VRGI--SGGQKKRLTTGEMMV-GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG-- 347
+G+ SGG+++R+ ++ P + + DE ++ LDS T + ++ +
Sbjct: 152 -KGMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVED---LRKNRT 206
Query: 348 TAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 379
+I S + A + IILL+ G+IV +G
Sbjct: 207 LIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 51/245 (20%), Positives = 91/245 (37%), Gaps = 85/245 (34%)
Query: 810 LTFDDVT--YSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-- 865
+TF ++ Y D P V+L+ ++ + + G + ++G SG+GK+TL
Sbjct: 8 ITFRNIRFRYKPDSP-------------VILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 866 -----DVLAGRKTGGYISGNITISGYPKK---------------QET--FTRISGYCEQN 903
G+ + I G+ Q+ R
Sbjct: 55 IQRFYIPENGQ---------VLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-------- 97
Query: 904 DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP------ 957
++ +++ + + +E+++ +L + L
Sbjct: 98 -------SIIDNISLA-----NPGMS-------VEKVIYAAKLAGAHDFISELREGYNTI 138
Query: 958 -GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV 1014
GE G LS QR+R+ IA LV NP I+ DE TS LD + ++MR + + GRTV
Sbjct: 139 VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 1015 VCTIH 1019
+ H
Sbjct: 198 IIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 91/268 (33%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
IL +++ IK G + ++G SGK+TL + +G+V +GHD+ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79
Query: 198 ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
R + Q D + ++ + ++ + P + ++
Sbjct: 80 WLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------NPGMSVE 113
Query: 255 VFMKAAATEGQEANV------LTDYYLKVLGLDVCADTLVGDEMVRGI--SGGQKKRLTT 306
+ AA + A L + Y +T+VG+ +G SGGQ++R+
Sbjct: 114 KVIYAA----KLAGAHDFISELREGY----------NTIVGE---QGAGLSGGQRQRI-- 154
Query: 307 GEMMVGPALA---------LFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVI---- 351
A+A L DE ++ LD + I+ ++ + I G +I
Sbjct: 155 -------AIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAHRL 204
Query: 352 SLLQPAPETYDLFDDIILLSDGQIVYQG 379
S ++ A D II++ G+IV QG
Sbjct: 205 STVKNA-------DRIIVMEKGKIVEQG 225
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 63/308 (20%), Positives = 101/308 (32%), Gaps = 120/308 (38%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
L ++ I G + ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
+ AY+ Q I ++RE + F G + +
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCA------------DTLVGDEMVRGI--SGGQKKRL 304
YY V + CA T +G+ +G+ SGGQK+R+
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 305 TTGEMMVGPALA----------LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI--- 351
+LA LF D +S +D+ HI ++ +L I
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 352 ---SLLQPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEV 408
S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 409 TSRKDQRQ 416
S
Sbjct: 230 ASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 49/249 (19%), Positives = 91/249 (36%), Gaps = 66/249 (26%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
S+T + T++ LNG++ + G L A++G G GK++L+ L
Sbjct: 3 SITVRNATFTWA-----------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSAL 51
Query: 869 AG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926
K G++ I G ++ Y Q AW++ +
Sbjct: 52 LAEMDKV----EGHVAIKG---------SVA-YVPQ----------------QAWIQNDS 81
Query: 927 EVD-----SETRKMFIEEIMELVELKP-LRQSLVGLP-------GESG--LSTEQRKRLT 971
+ + + + +++ L P L LP GE G LS Q++R++
Sbjct: 82 LRENILFGCQLEEPYYRSVIQACALLPDLEI----LPSGDRTEIGEKGVNLSGGQKQRVS 137
Query: 972 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTV--KNTVETGRTVVCTIHQPSIDIFEAF 1029
+A + +N I D+P S +DA + V + +T + H +
Sbjct: 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHS--MSYLPQV 195
Query: 1030 DELFLMKRG 1038
D + +M G
Sbjct: 196 DVIIVMSGG 204
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 71/234 (30%)
Query: 810 LTFDDVT--YSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-- 865
L+ V Y +L +S +P + A G SG GK+T+
Sbjct: 2 LSARHVDFAYDDSEQ--------------ILRDISFEAQPNSIIAFAGPSGGGKSTIFSL 47
Query: 866 -----DVLAGRKTGGYISGNITISGYPKKQETFTRIS-----GYCEQ-----NDIHSPLV 910
AG ITI G P + + G+ Q
Sbjct: 48 LERFYQPTAGE---------ITIDGQPIDN--ISLENWRSQIGFVSQDSAIMAG------ 90
Query: 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GESG-- 961
T+ E+L Y L + E ++ ++++L R + +P GE G
Sbjct: 91 TIRENLTYG----LEGDYTDE-------DLWQVLDLAFARSFVENMPDQLNTEVGERGVK 139
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVV 1015
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + ++ GRT +
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 1e-08
Identities = 58/264 (21%), Positives = 95/264 (35%), Gaps = 84/264 (31%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL------KVSGRVTYNGHDMN 192
IL+D+S +P + GP GK+T+ SL +G +T +G ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTI---------FSLLERFYQPTAGEITIDGQPID 67
Query: 193 EFVPQ--RTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
+ R+ ++SQ D I T+RE L + G++
Sbjct: 68 NISLENWRSQIGFVSQ-DSAIMAGTIRENLTY------------------------GLEG 102
Query: 250 DLFIDVFMKAAATEGQEANV------LTDYYLKVLGLDVCADTLVGDEMVRGI--SGGQK 301
D + + A + D +T VG+ RG+ SGGQ+
Sbjct: 103 DYTDEDLWQVL----DLAFARSFVENMPDQL----------NTEVGE---RGVKISGGQR 145
Query: 302 KRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVI----SLLQ 355
+RL + L +DE + LDS + + +L ++ G T VI S +
Sbjct: 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAHRLSTIV 202
Query: 356 PAPETYDLFDDIILLSDGQIVYQG 379
A D I + GQI G
Sbjct: 203 DA-------DKIYFIEKGQITGSG 219
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 53/270 (19%), Positives = 91/270 (33%), Gaps = 110/270 (40%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
+LKD++ I+ G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
++ SQ I T++E + F G YD
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCA------------DTLVGDEMVRGI--SGGQKKRL 304
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 305 TTGEMMVGPALA----------LFMDEISNGLDSSTTFHIVNS-----LRQNIHILNGTA 349
+LA L LD T I S + IL T+
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRILV-TS 188
Query: 350 VISLLQPAPETYDLFDDIILLSDGQIVYQG 379
+ L+ A D I++L +G + G
Sbjct: 189 KMEHLKKA-------DKILILHEGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 40/217 (18%), Positives = 80/217 (36%), Gaps = 51/217 (23%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD-----SETRKMFIEEIMELVELKPLR 950
IS +C Q +W+ T + + +++ +L+
Sbjct: 71 IS-FCSQ----------------FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEE-- 111
Query: 951 QSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
+ GE G LS QR R+++A + + + +D P LD +
Sbjct: 112 -DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 170
Query: 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ + +T + + ++ + D++ ++ G
Sbjct: 171 ESCVCKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 5e-10
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 30/164 (18%)
Query: 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRI 896
LLN + + G +G GK+TLM +A + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CRT 497
Query: 897 SGYCEQN-DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL-V 954
Y E + D +V + + E T++ I++ + ++ +
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFV---------FESGVGTKEA-IKDKLIEFGFTDEMIAMPI 546
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 547 -----SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 61/399 (15%), Positives = 116/399 (29%), Gaps = 91/399 (22%)
Query: 14 RSSSEGAFPRSPREEEEDDEKEALKWAAHEKLPSLGLQERQR-LIDKLVKVTDVDNEKFM 72
R + E + +E L + R + +++ + + ++ +
Sbjct: 323 RRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERI 382
Query: 73 LKLRYRFDRVGIELPKVEVRYE-HLNIEAEAFLASKALPTFTSFFTNIIEAFFNSIHILT 131
+ + F + + + ++ A +P +F E +
Sbjct: 383 IDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFS 442
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
+L +K R + GP GK+TL+ A+A +V G T
Sbjct: 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG-----QVDGFPTQEECRT 497
Query: 192 NEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251
+V D + +V +
Sbjct: 498 V-YVEH-------DIDGTHSDTSVLDF--------------------------------- 516
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM----VRGISGGQKKRLTTG 307
VF T+ + L + G DEM + +SGG K +L
Sbjct: 517 ---VFESGVGTKEAIKDKLIE-----FGFT--------DEMIAMPISALSGGWKMKLALA 560
Query: 308 EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI-----SLLQPAPETYD 362
++ A L +DE +N LD+ +VN L T++ L +
Sbjct: 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLD------N 610
Query: 363 LFDDIILLSDGQIV-YQGPCELVLDFFESMGFKCPERKS 400
+ + II ++ Y+G F KCP K+
Sbjct: 611 VCEYIINYEGLKLRKYKGN----FTEFVK---KCPAAKA 642
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-10
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 30/213 (14%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGNITISGYPKKQ---ET 892
L G++ + G AL+G SG GK+T + ++ Y + G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 893 FTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLRTEVDSETRKMFIEE-IMELVELKP 948
I G Q P++ T+ E++ Y E++ ++ + IM+L P
Sbjct: 462 LREIIGVVSQE----PVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL----P 513
Query: 949 LR-QSLVGLPGESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005
+ +LVG E G LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 514 HQFDTLVG---ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570
Query: 1006 NTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
GRT + H+ S + A D + G
Sbjct: 571 K-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 46/222 (20%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYISGNITISGYPKKQ 890
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 891 ETFTRISGYCEQNDIHS--PLV---TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE 945
+ Q I S P++ ++ E++ Y R+ + EEI+ +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----------EEIVRAAK 1146
Query: 946 LKPLRQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996
+ Q + LP G+ G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 997 AAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+V + + GRT + H+ S I A D + +++ G
Sbjct: 1207 EKVVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 62/268 (23%), Positives = 99/268 (36%), Gaps = 91/268 (33%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
ILK ++ +K G+ L+G GK+T + + D G V+ +G D+ +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVR 460
Query: 198 --RTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
R +SQ V + T+ E + + G E ++
Sbjct: 461 YLREIIGVVSQEPV-LFATTIAENIRY-------GR------EDVTMDE----------- 495
Query: 255 VFMKAAATEGQEANV------LTDYYLKVLGLDVCADTLVGDEMVRGI--SGGQKKRLTT 306
++ A +EAN L + DTLVG+ RG SGGQK+R+
Sbjct: 496 --IEKAV---KEANAYDFIMKLPHQF----------DTLVGE---RGAQLSGGQKQRI-- 535
Query: 307 GEMMVGPALA---------LFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVI---- 351
A+A L +DE ++ LD+ + + +L + G T VI
Sbjct: 536 -------AIARALVRNPKILLLDEATSALDTESEAVVQAALDK---AREGRTTIVIAHRL 585
Query: 352 SLLQPAPETYDLFDDIILLSDGQIVYQG 379
S ++ A D I G IV QG
Sbjct: 586 STVRNA-------DVIAGFDGGVIVEQG 606
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 53/285 (18%), Positives = 95/285 (33%), Gaps = 111/285 (38%)
Query: 125 NSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRV 184
+S+ +LKD++ I+ G++ + G +GKT+LL+ + G+L+ G++
Sbjct: 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKI 95
Query: 185 TYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKE 244
++G ++ SQ + I T++E + +G YD
Sbjct: 96 KHSG----------RISFCSQ-NSWIMPGTIKENI--------IGVSYD----------- 125
Query: 245 AGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA------------DTLVGDEM 292
Y V + C + ++G+
Sbjct: 126 --------------------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE-- 155
Query: 293 VRGI--SGGQKKRLTTGEMMVGPALA----------LFMDEISNGLDSSTTFHIVNS--- 337
GI SGGQ+ R+ +LA L LD T I S
Sbjct: 156 -GGITLSGGQRARI---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVC 204
Query: 338 --LRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380
+ IL T+ + L+ A D I++L +G + G
Sbjct: 205 KLMANKTRILV-TSKMEHLKKA-------DKILILHEGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 40/217 (18%), Positives = 82/217 (37%), Gaps = 52/217 (23%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTR 895
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 896 ISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD----SETRKMFIEEIMELVELKP-LR 950
IS +C Q ++W+ T + + +++ +L+ +
Sbjct: 101 IS-FCSQ----------------NSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143
Query: 951 QSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
+ GE G LS QR R+++A + + + +D P LD +
Sbjct: 144 K----FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 199
Query: 1002 RTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ + +T + + ++ + D++ ++ G
Sbjct: 200 ESCVCKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGNITISGYPKKQ---ET 892
L G++ PG +TAL+G +G+GK+T+ +L Y G + + G P Q
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NL---YQPTGGKVLLDGEPLVQYDHHY 90
Query: 893 FTRISGYCEQNDIHSPLV---TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
Q PL+ + E++ Y T + EEI +
Sbjct: 91 LHTQVAAVGQE----PLLFGRSFRENIAYG-----LTRTPTM------EEITAVAMESGA 135
Query: 950 RQSLVGLP-------GESG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
+ G P GE+G LS QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 136 HDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195
Query: 1001 MRTV-KNTVETGRTVVCTIH 1019
R + ++ RTV+
Sbjct: 196 QRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 54/274 (19%), Positives = 92/274 (33%), Gaps = 100/274 (36%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL------KVSGRVTYNGHDM 191
+L+ ++ + PG++T L+GP SGK+T+ +L G+V +G +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------ALLQNLYQPTGGKVLLDGEPL 83
Query: 192 NEFVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIK 248
++ A + Q + + + RE +A+ LT E+
Sbjct: 84 VQYDHHYLHTQVAAVGQEPL-LFGRSFRENIAYG------------LTRTPTMEE----- 125
Query: 249 PDLFIDVFMKAAATEGQEANV------LTDYYLKVLGLDVCADTLVGDEMVRGI--SGGQ 300
+ A A E+ Y DT VG+ G SGGQ
Sbjct: 126 --------ITAVA---MESGAHDFISGFPQGY----------DTEVGE---TGNQLSGGQ 161
Query: 301 KKRLTTGEMMVGPALA---------LFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TA 349
++ + ALA L +D ++ LD+ V L
Sbjct: 162 RQAV---------ALARALIRKPRLLILDNATSALDAGNQ-LRVQRLLYESPEWASRTVL 211
Query: 350 VI----SLLQPAPETYDLFDDIILLSDGQIVYQG 379
+I SL + A I+ L +G + QG
Sbjct: 212 LITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 852 ALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFTRISGYCEQNDIHSP 908
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968
++VY ++ Y LR V+ + R + E+ E + + L P LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRK---PAR--LSGGERQ 133
Query: 969 RLTIAVELVANPSIIFMDEPTSGLDAR 995
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 155 LLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQ------HD 207
LLGP +GK+ L +AG + G V NG D+ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEA 245
++V +A+ R V E RR +E
Sbjct: 85 -----LSVYRNIAYGLR--NVERV-----ERDRRVREM 110
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 826 KLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGN 880
+ GV + GVS R G + L+G SG+GKTT++ ++AG R T G+
Sbjct: 16 EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT----KGD 71
Query: 881 ITISGYPKKQETFTRISGYCEQNDIHS--------PLVTVYESLLYSAWLRLRTEVDSET 932
+ I G + T + + ++ +TVY+++ + LR + V +
Sbjct: 72 VWIGG-----KRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFG--LREK-RVPKDE 121
Query: 933 RKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992
+ E++ + L+ P E LS Q++R+ +A L P ++ DEP + +
Sbjct: 122 MDARVRELLRFMRLESYANRF---PHE--LSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 993 DAR 995
D +
Sbjct: 177 DTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
++ VS I+ G M LLGP SGKTT+L +AG + G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 197 QRTAAYISQHDV---HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEA 245
+R + Q+ H MTV + ++F R + V E+ R +E
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL 129
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 43/195 (22%)
Query: 821 MPKEMKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGY 876
M + + + + +LN +S + PG + ++G SG GKTTL+ LAG +
Sbjct: 1 MTAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--- 57
Query: 877 ISGNITISGYPKKQETFTRISGYC-----EQNDI-----------HSPLVTVYESLLYSA 920
SG I++SG I + + H +TVY ++ Y
Sbjct: 58 -SGEISLSG--------KTIFSKNTNLPVRERRLGYLVQEGVLFPH---LTVYRNIAYG- 104
Query: 921 WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP 980
L ++ R+ IE ++EL + L P E LS Q++R +A L +P
Sbjct: 105 -LGNGKGRTAQERQR-IEAMLELTGISELAGRY---PHE--LSGGQQQRAALARALAPDP 157
Query: 981 SIIFMDEPTSGLDAR 995
+I +DEP S LD +
Sbjct: 158 ELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 29/121 (23%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG--QLDSSLKVSGRVTYNGHDMNE-- 193
+L D+S + PG + ++G GKTTLL LAG Q D SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-----SGEISLSGKTIFSKN 72
Query: 194 -FVP--QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKE 244
+P +R Y+ Q H +TV +A+ + + +R +
Sbjct: 73 TNLPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEA 121
Query: 245 A 245
Sbjct: 122 M 122
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 87/282 (30%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-Q 197
ILK V+ ++ G + L+GP +GK+TL LAG + ++ G + +G ++ E P +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDE 76
Query: 198 RTAAYI---SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTEL-ARREKEAGIKPDLFI 253
R + Q+ V + GV + L A+ +E + F
Sbjct: 77 RARKGLFLAFQYPVEV---------------PGVTIANFLRLALQAKLGRE--VGVAEFW 119
Query: 254 DVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR-----GISGGQKKRLTTGE 308
KA ++L D + + G SGG+KKR +
Sbjct: 120 TKVKKAL---------------ELLDWD--------ESYLSRYLNEGFSGGEKKRNEILQ 156
Query: 309 M-MVGPALALFMDEISNGLDSSTTFHI---------VNSLRQNIHILNGTAVIS----LL 354
+ ++ P A+ +DE +GLD I VN++R G VI+ +L
Sbjct: 157 LLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGPN---FGALVITHYQRIL 206
Query: 355 ---QPAPETYDLFDDIILLSDGQIVYQGPCELVLDFFESMGF 393
QP D + ++ DG++V G EL L+ E+ G+
Sbjct: 207 NYIQP--------DKVHVMMDGRVVATGGPELALE-LEAKGY 239
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 53/207 (25%)
Query: 826 KLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ISGN 880
+++ + + + +L GV+ G + ALMG +GAGK+TL +LAG Y G
Sbjct: 5 EIRDLWASIDGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGE 61
Query: 881 ITISG---------------------YPKKQETFTRISGYCEQNDIHSPLVTVYESLLYS 919
I + G YP + G VT+ L +
Sbjct: 62 ILLDGENILELSPDERARKGLFLAFQYP------VEVPG-----------VTIANFLRLA 104
Query: 920 AWLRLRTEVDSETRKMFIEEIMELVELKP--LRQSLVGLPGESGLSTEQRKRLTIAVELV 977
+L EV +++ +EL++ L + L G S ++KR I LV
Sbjct: 105 LQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLV 159
Query: 978 ANPSIIFMDEPTSGLDARAAAIVMRTV 1004
P+ +DE SGLD A +V R V
Sbjct: 160 LEPTYAVLDETDSGLDIDALKVVARGV 186
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 4e-08
Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 55/207 (26%)
Query: 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869
L F +VT++ ++ L ++ G AL+G SG+GK+T+ ++
Sbjct: 342 LEFRNVTFTYP-----------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI- 389
Query: 870 GRKTGGY--ISGNITISGYPKKQETFTRIS-----GYCEQ-----NDIHSPLVTVYESLL 917
T Y G+I + G+ ++ +T S Q ND TV ++
Sbjct: 390 ---TRFYDIDEGHILMDGHDLRE--YTLASLRNQVALVSQNVHLFND------TVANNIA 438
Query: 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GESG--LSTEQRK 968
Y+ + +R E+I E + + + GE+G LS QR+
Sbjct: 439 YA-------RTEEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487
Query: 969 RLTIAVELVANPSIIFMDEPTSGLDAR 995
R+ IA L+ + I+ +DE TS LD
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 53/256 (20%), Positives = 105/256 (41%), Gaps = 68/256 (26%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
L++++ I G+ L+G SGK+T+ + D G + +GHD+ E+
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLAS 414
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
A +SQ +VH+ TV +A++ + + +
Sbjct: 415 LRNQVALVSQ-NVHLFNDTVANNIAYA-------------------------RTEEYSRE 448
Query: 256 FMKAAATEGQEANV------LTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
++ AA + A + + DT++G+ V +SGGQ++R+
Sbjct: 449 QIEEAA---RMAYAMDFINKMDNGL----------DTIIGENGVL-LSGGQRQRIAIARA 494
Query: 310 MVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVI----SLLQPAPETYDL 363
++ + L +DE ++ LD+ + I +L + + VI S ++ A
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALD---ELQKNRTSLVIAHRLSTIEQA------ 545
Query: 364 FDDIILLSDGQIVYQG 379
D+I+++ DG IV +G
Sbjct: 546 -DEIVVVEDGIIVERG 560
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Query: 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YISGNITISGYPKK 889
K+V L+ V+ G ++G SGAGKTT M ++AG + G Y + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
R G Q P +T +E++ + L E RK +EE+ +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKR-VEEVAKILDIHHV 133
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
L P E LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 134 ---LNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 60/202 (29%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 198 RTAAYISQHDV-----------HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAG 246
+ + +T E +AF + E+ +R +E
Sbjct: 76 IVPP--EDRKIGMVFQTWALYPN---LTAFENIAFPLTNMKMSK-----EEIRKRVEEV- 124
Query: 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTT 306
K+L + L + R +SG Q++R+
Sbjct: 125 ----------------------------AKILDIH---HVL--NHFPRELSGAQQQRVAL 151
Query: 307 GEMMVGPALALFMDE-ISNGLD 327
+V L +DE SN LD
Sbjct: 152 ARALVKDPSLLLLDEPFSN-LD 172
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-08
Identities = 54/230 (23%), Positives = 88/230 (38%), Gaps = 69/230 (30%)
Query: 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM----- 865
D V++ + +++ +L ++ + G A +G+SG GK+TL+
Sbjct: 341 DIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389
Query: 866 --DVLAGRKTGGYISGNITISGYPKK---------------QETFTRISGYCEQNDIHSP 908
DV +G+ I I G+ K Q+ S
Sbjct: 390 FYDVTSGQ---------ILIDGHNIKDFLTGSLRNQIGLVQQDNIL-FSD---------- 429
Query: 909 LVTVYESLLYSAWLRL---RTEVDSETRKMFIEE-IMELVELKPLR-QSLVGLPGESGLS 963
TV E++L R EV + + IM L P + VG G LS
Sbjct: 430 --TVKENILLG---RPTATDEEVVEAAKMANAHDFIMNL----PQGYDTEVGERG-VKLS 479
Query: 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
Q++RL+IA + NP I+ +DE TS LD + +I+ + + RT
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRT 528
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 5e-08
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 120 IEAFFNSIHILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLK 179
+ ++ +IH + K + + G++ L+G +GKTT L A+AG + +
Sbjct: 12 LHVYYGAIHAI----------KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-- 59
Query: 180 VSGRVTYNGHDMNEFVPQRTAAY-ISQHDV----HI-GEMTVRETL---AFSAR-CQGVG 229
G++ +NG D+ I+ V I E+TV E L A++ + +G+
Sbjct: 60 -KGKIIFNGQDITNKPAHVINRMGIAL--VPEGRRIFPELTVYENLMMGAYNRKDKEGIK 116
Query: 230 SRYDMLTEL-----ARREKEAG 246
+ + L R ++ G
Sbjct: 117 RDLEWIFSLFPRLKERLKQLGG 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 22/193 (11%)
Query: 830 VHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYP 887
V+ + + G+ G + L+G +GAGKTT + +AG R G I +G
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ----KGKIIFNGQD 69
Query: 888 -KKQETFTRIS-GYC---EQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIME 942
+ G E I L TVYE+L+ A+ R D E K +E I
Sbjct: 70 ITNKPAHVINRMGIALVPEGRRIFPEL-TVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 943 LV-ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1001
L LK + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1002 RTVKNTVETGRTV 1014
++ + G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 7e-08
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 55/208 (26%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+ DVT++ ++K L + VS + G AL+G SG+GK+T+ ++
Sbjct: 341 EVDVKDVTFTYQ----------GKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
Query: 869 AGRKTGGY--ISGNITISGYPKKQETFTRIS-----GYCEQ-----NDIHSPLVTVYESL 916
T Y SG+I + G+ + + + Q ND T+ ++
Sbjct: 390 ----TRFYDVDSGSICLDGHDVRD--YKLTNLRRHFALVSQNVHLFND------TIANNI 437
Query: 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP-------GESG--LSTEQR 967
Y+A E E +I + + + +P GE+G LS QR
Sbjct: 438 AYAA----EGEYTRE-------QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486
Query: 968 KRLTIAVELVANPSIIFMDEPTSGLDAR 995
+R+ IA L+ + ++ +DE TS LD
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 4e-05
Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 68/256 (26%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
L VS I G+ L+G SGK+T+ D SG + +GHD+ ++
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTN 414
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
R A +SQ +VH+ T+ +A+ + + RE+
Sbjct: 415 LRRHFALVSQ-NVHLFNDTIANNIAY-------AAEGE-----YTREQ------------ 449
Query: 256 FMKAAATEGQEANV------LTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
++ AA ++A+ + DT++G+ +SGGQ++R+
Sbjct: 450 -IEQAA---RQAHAMEFIENMPQGL----------DTVIGENGTS-LSGGQRQRVAIARA 494
Query: 310 MVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNG--TAVI----SLLQPAPETYDL 363
++ A L +DE ++ LD+ + I +L + VI S ++ A
Sbjct: 495 LLRDAPVLILDEATSALDTESERAIQAALD---ELQKNKTVLVIAHRLSTIEQA------ 545
Query: 364 FDDIILLSDGQIVYQG 379
D+I+++ +G+I+ +G
Sbjct: 546 -DEILVVDEGEIIERG 560
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 66/277 (23%), Positives = 104/277 (37%), Gaps = 86/277 (31%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-Q 197
IL+ +S + PG + ++GP SGK+TL LAG+ D + G V + G D+ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPED 93
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQ------GVGSRYDMLTELARREKEAGIKPDL 251
R I +AF Q GV +++ + T L G +
Sbjct: 94 RAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETLD 135
Query: 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR-----GISGGQKKRLTT 306
D F + + +L + ++++ G SGG+KKR
Sbjct: 136 RFD-FQDLMEEK-----------IALLKMP--------EDLLTRSVNVGFSGGEKKRNDI 175
Query: 307 GEMMV-GPALALFMDEISNGLDSSTTFHI---------VNSLRQNIHILNGTAVIS---- 352
+M V P L + +DE +GLD I VNSLR +++
Sbjct: 176 LQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDGK---RSFIIVTHYQR 225
Query: 353 LL---QPAPETYDLFDDIILLSDGQIVYQGPCELVLD 386
+L +P D + +L G+IV G LV
Sbjct: 226 ILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 57/213 (26%)
Query: 820 DMPKEMKLKGVH---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 876
+ +K +H EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y
Sbjct: 16 RGSHMLSIKDLHVSVEDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DY 72
Query: 877 --ISGNITISG---------------------YPKKQETFTRISGYCEQNDIHSPLVTVY 913
G + G YP I G V+
Sbjct: 73 EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYP------VEIPG-----------VSNQ 115
Query: 914 ESLL--YSAWLRLRTEVDSETRKM--FIEEIMELVELKP--LRQSLVGLPGESGLSTEQR 967
L +A R + + +EE + L+++ L +S+ G S ++
Sbjct: 116 FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV-----NVGFSGGEK 170
Query: 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000
KR I V P + +DE SGLD A +V
Sbjct: 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVV 203
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 45/233 (19%), Positives = 80/233 (34%), Gaps = 62/233 (26%)
Query: 809 SLTFDDVT--YSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 866
+T D+T Y+ +L +S + PG L+G +G+GK+TL+
Sbjct: 19 QMTVKDLTAKYTEGGN------------AIL-ENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 867 VLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS-PL------VTVY--ESLL 917
G I I G S L V + +
Sbjct: 66 AFLRLL---NTEGEIQIDGV-----------------SWDSITLEQWRKAFGVIPQKVFI 105
Query: 918 YSAWLR-----LRTEVDSETRKMFIEEIMELVELKPLRQSLVG----LPGESG--LSTEQ 966
+S R D E I ++ + V L+ + + G + + G LS
Sbjct: 106 FSGTFRKNLDPNAAHSDQE-----IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160
Query: 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
++ + +A +++ I+ +DEP++ LD I+ RT+K V
Sbjct: 161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ--AFADCTVILCE 211
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 14/158 (8%)
Query: 899 YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPG 958
++ + +A ++ + + E+V + + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 959 ESG------LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006
E LS +R L +A L S++ +DEPT LD ++ ++
Sbjct: 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Query: 1007 TVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1044
++ V+ H ++ +A D + + V
Sbjct: 300 YLKKIPQVILVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 26/167 (15%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFT 894
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 895 RISGYCEQNDI-----HSPLV---TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL 946
R I H L+ TV+ ++ L L + K + E++ LV L
Sbjct: 104 R-------RQIGMIFQHFNLLSSRTVFGNVALP--LEL-DNTPKDEVKRRVTELLSLVGL 153
Query: 947 KPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
S P LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 154 GDKHDSY---PSN--LSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 36/194 (18%)
Query: 824 EMKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS-GN 880
E+KL+ + + LN ++ + G AL+G SG+GK+TL+ +AG + G
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGK 59
Query: 881 ITISGY------PKKQET---FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSE 931
I PK + F QN P +TVY+++ + L LR E
Sbjct: 60 IYFDEKDVTELPPKDRNVGLVF--------QNWALYPHMTVYKNIAFP--LELRKAPREE 109
Query: 932 TRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991
K + E+ +++ + L L P + LS Q++R+ IA LV P ++ +DEP S
Sbjct: 110 IDKK-VREVAKMLHIDKL---LNRYPWQ--LSGGQQQRVAIARALVKEPEVLLLDEPLSN 163
Query: 992 LDA--RAAAIVMRT 1003
LDA R +R
Sbjct: 164 LDALLRLE---VRA 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 57/198 (28%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T L +++ IK G LLGP SGK+TLL +AG + SG++ ++ D+ E P+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73
Query: 198 -RTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPD 250
R + Q H MTV + +AF + E+ ++ +E
Sbjct: 74 DRNVGLVFQNWALYPH------MTVYKNIAFPLELRKAPR-----EEIDKKVREVA---- 118
Query: 251 LFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMM 310
K+L +D L + +SGGQ++R+ +
Sbjct: 119 -------------------------KMLHID---KLL--NRYPWQLSGGQQQRVAIARAL 148
Query: 311 VGPALALFMDE-ISNGLD 327
V L +DE +SN LD
Sbjct: 149 VKEPEVLLLDEPLSN-LD 165
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFT 894
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV 954
+ QN P + V ++L + +R++ ++ R + + ++++ L
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIEHLLDRN- 124
Query: 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995
P LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 125 --PLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP- 196
L ++S ++ G ++LGP +GKT L +AG SGR+ +G D+ + P
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 197 QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGV 228
+ A++ Q H M V++ L F R + +
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI 102
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 36/194 (18%)
Query: 824 EMKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIS-GN 880
+++ + + K+ ++GVS + G AL+G SG GKTT + +LAG + G
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGE 59
Query: 881 ITISGY------PKKQET---FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSE 931
I PK +E F QN P +TV+E++ + LR R E
Sbjct: 60 IYFDDVLVNDIPPKYREVGMVF--------QNYALYPHMTVFENIAFP--LRARRISKDE 109
Query: 932 TRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 991
K + EI + + L L P + LS Q++R+ +A LV P ++ DEP S
Sbjct: 110 VEKR-VVEIARKLLIDNL---LDRKPTQ--LSGGQQQRVALARALVKQPKVLLFDEPLSN 163
Query: 992 LDA--RAAAIVMRT 1003
LDA R MR
Sbjct: 164 LDANLRMI---MRA 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 51/199 (25%), Positives = 75/199 (37%), Gaps = 57/199 (28%)
Query: 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196
+ + VS +K G LLGP GKTT LL LAG + SG + ++ +N+ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPP 72
Query: 197 -QRTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKP 249
R + Q H MTV E +AF R + + E+ +R E
Sbjct: 73 KYREVGMVFQNYALYPH------MTVFENIAFPLRARRISK-----DEVEKRVVEIA--- 118
Query: 250 DLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM 309
+ L +D + L D +SGGQ++R+
Sbjct: 119 --------------------------RKLLID---NLL--DRKPTQLSGGQQQRVALARA 147
Query: 310 MVGPALALFMDE-ISNGLD 327
+V L DE +SN LD
Sbjct: 148 LVKQPKVLLFDEPLSN-LD 165
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 34/163 (20%)
Query: 853 LMGVSGAGKTTLMDVLAGRKTGGYIS-GNITISGY------PKKQE---TFTRISGYCEQ 902
L+G SG GKTT + ++AG + + G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 903 NDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962
+ P +TVYE++ + L+++ + + + EL++++ L L P + L
Sbjct: 91 SYAVWPHMTVYENIAFP--LKIK-KFPKDEIDKRVRWAAELLQIEEL---LNRYPAQ--L 142
Query: 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1003
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 57/198 (28%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T + ++ IK G +LLGP GKTT L +AG + + GR+ + D+ P+
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81
Query: 198 -RTAAYISQ------HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPD 250
R + + Q H MTV E +AF + + E+ +R + A
Sbjct: 82 DRNISMVFQSYAVWPH------MTVYENIAFPLKIKKFPK-----DEIDKRVRWAA---- 126
Query: 251 LFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMM 310
++L ++ + L + +SGGQ++R+ +
Sbjct: 127 -------------------------ELLQIE---ELL--NRYPAQLSGGQRQRVAVARAI 156
Query: 311 VGPALALFMDE-ISNGLD 327
V L MDE +SN LD
Sbjct: 157 VVEPDVLLMDEPLSN-LD 173
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 48/242 (19%)
Query: 801 MVLPFEPYSLTFDDVTYSADMPKEMKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSG 858
M + + V + M + + + + + L +L G++ R G + ++G SG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSG 60
Query: 859 AGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS----------- 907
+GK+T + L + + G I I G K + +++
Sbjct: 61 SGKSTFLRCLNLLED--FDEGEIIIDGINLKAK----------DTNLNKVREEVGMVFQR 108
Query: 908 ----PLVTVYESL-LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG- 961
P +TV ++ L +R +E + MEL++ VGL ++
Sbjct: 109 FNLFPHMTVLNNITLAPMKVRKWPREKAE------AKAMELLDK-------VGLKDKAHA 155
Query: 962 ----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1017
LS Q +R+ IA L P I+ DEPTS LD V+ +K G T+V
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215
Query: 1018 IH 1019
H
Sbjct: 216 TH 217
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 50/164 (30%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 853 LMGVSGAGKTTLMDVLAGRKTGGYIS-GNITISGYPKKQETFTRISGYCE---------- 901
L+G SG GKTT + ++AG + S G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 902 QNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961
Q+ P +TVY+++ + L+LR +V + + E+ EL+ L L L P E
Sbjct: 88 QSYALYPHMTVYDNIAFP--LKLR-KVPRQEIDQRVREVAELLGLTEL---LNRKPRE-- 139
Query: 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1003
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 39/224 (17%)
Query: 821 MPKEM-KLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 877
M + + +H+ +L GVS R G + +++G SG+GK+T + + +
Sbjct: 2 MSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PS 59
Query: 878 SGNITISGYP-KKQETFTRISGYCEQNDIHS---------------PLVTVYESLLYSAW 921
G I ++G ++N + +TV E+++ +
Sbjct: 60 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP- 118
Query: 922 LRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGE------SGLSTEQRKRLTIAVE 975
+V ++ E ++ + VG+ LS Q++R++IA
Sbjct: 119 ----IQVLGLSKHDARERALKYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARA 167
Query: 976 LVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH 1019
L P ++ DEPTS LD V+R ++ E G+T+V H
Sbjct: 168 LAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 12/119 (10%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALA-----GQ--LDSSLKVSGRVTY-NGHDMNEF 194
+ ++ G + L+ P +GK+ L L LA G L+ +G V Y D
Sbjct: 24 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 82
Query: 195 VPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFI 253
+ R A + + L M E K A L +
Sbjct: 83 IHHRLHALGAHLSAEERQAVADGLLIQPLIGSLP---NIMAPEWFDGLKRAAEGRRLMV 138
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 20/98 (20%)
Query: 958 GESGLSTEQR----KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013
GE RL +++ L S++ +DEPT LD ++ ++ ++
Sbjct: 61 GER-----IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 1014 VVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNS 1051
V+ H ++ +A D + I + +S
Sbjct: 116 VILVSHDE--ELKDAADHV---------IRISLENGSS 142
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1326 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.9 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.86 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.85 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.85 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.83 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.8 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.8 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.8 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.79 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.78 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.78 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.76 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.75 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.74 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.73 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.73 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.73 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.72 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.72 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.69 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.69 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.69 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.67 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.67 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.66 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.65 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.65 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.64 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.62 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.62 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.62 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.61 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.61 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.6 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.6 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.6 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.59 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.57 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.56 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.55 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.55 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.55 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.52 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.51 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.51 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.5 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.49 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.49 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.49 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.49 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.48 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.48 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.48 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.48 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.47 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.47 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.47 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.47 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.46 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.45 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.45 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.44 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.44 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.44 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.42 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.41 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.4 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.39 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.38 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.38 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.34 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.34 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.32 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.32 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.31 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.3 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.29 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.29 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.29 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.27 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.27 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.26 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.25 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.25 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.25 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.24 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.23 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.22 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.22 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.18 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.18 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.17 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.16 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.16 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.15 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.15 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.15 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.15 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.13 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.13 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.11 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.1 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.09 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.09 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.08 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.08 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.08 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.08 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.07 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.07 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.05 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.05 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.04 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.03 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.03 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.03 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.99 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.97 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.97 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.96 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.96 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.96 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.95 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.92 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.89 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.89 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.88 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.87 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.86 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.85 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.81 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.81 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.79 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.78 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.78 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.77 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.72 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.71 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.71 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.69 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.68 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.67 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.66 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.65 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.64 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.64 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.62 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.61 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.61 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.59 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.54 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.52 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.51 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.49 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.49 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.47 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.46 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.45 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.45 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.44 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.43 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.42 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.41 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.34 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.32 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.31 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.28 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.27 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.27 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.27 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.26 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.26 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.25 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.23 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.22 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.21 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.15 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.11 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.07 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.03 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.01 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.99 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.97 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.97 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.91 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.89 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.86 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.86 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.82 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.79 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.78 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.78 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.76 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.72 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.71 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.62 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.61 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.61 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.61 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.61 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.61 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.61 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.54 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.53 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.51 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.51 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.48 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.45 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.42 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.42 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.38 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.36 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.36 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.36 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.35 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.33 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.31 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.29 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.29 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.27 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.27 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.2 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.19 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.18 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.17 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.16 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.13 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.13 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.13 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.12 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.09 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.07 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.06 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.06 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.05 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.02 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.01 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.0 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.0 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.97 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.96 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.95 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.91 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.83 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.83 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.83 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.82 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.82 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.8 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.76 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.74 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.74 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.67 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.64 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.64 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.62 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.61 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.57 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.57 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.48 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.47 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.44 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.43 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.42 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.41 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.39 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.39 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.36 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.35 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.35 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.25 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.25 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.25 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.21 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.2 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.19 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.16 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.14 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.12 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.11 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.1 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.09 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.03 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.01 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.0 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.0 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.98 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.97 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.97 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.96 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.96 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.91 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.89 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.88 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.86 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.82 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.81 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.79 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.77 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.71 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.65 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.64 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.61 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.58 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.57 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.57 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.56 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.54 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.54 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.53 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.48 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.44 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.42 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.41 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.39 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.38 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.3 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.25 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.21 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.2 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.17 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.12 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.12 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.12 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.1 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.09 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.08 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.01 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.0 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.96 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.95 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.95 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.91 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 94.91 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.91 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 94.84 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.83 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.76 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 94.71 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.68 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.68 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.65 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.64 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.62 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.58 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.49 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.47 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.43 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.37 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.33 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.27 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.23 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.18 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.15 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.12 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.11 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.1 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.09 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.06 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.06 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.05 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.03 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.01 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.0 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 93.98 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 93.97 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 93.96 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 93.9 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 93.79 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.74 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.73 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 93.72 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 93.7 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 93.66 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 93.66 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 93.59 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-73 Score=769.11 Aligned_cols=214 Identities=27% Similarity=0.394 Sum_probs=182.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+.. .+.++|+|||++|+|||++||+||||||||||+++|.|... +.+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 69999999998632 23469999999999999999999999999999999999887 4689999999998
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
+. ..+|+.++||||++.++. -|++|||.|+.. +.+.+ ++.++++++..++.+. .|+.+|..|
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 65 457788999999998886 499999987521 12222 3457888998887643 466676544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+++|+++. ...||+|++|++
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~- 1290 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN- 1290 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-
T ss_pred -cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC-
Confidence 4799999999999999999999999999999999999999999999875 48999999999873 567999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++.+|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 799999986
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-66 Score=699.90 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=175.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||++.|+.. ++.++|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 58999999988532 12359999999999999999999999999999999999887 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
+. ..+++.+|||+|++.++ ..||+||+.++... ...+. +.+++.++..++.+. .|+.+|..|
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCC---CCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 54 23567899999999776 46999999875311 11222 235566666665433 455566543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..||||||||++|||||+++|+||+|||||||||+.+++.|++.|++. .+|+|||+++||++. + ..||||++|++
T Consensus 1170 -~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~- 1244 (1284)
T 3g5u_A 1170 -TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN- 1244 (1284)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-
T ss_pred -CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999885 459999999999973 4 66999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
Confidence 799999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-57 Score=564.97 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=168.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE-----
Confidence 577888876552 1 26899999999999999999999999999999999877 35788875
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.+.+||++|+....+.+||.|++........ ...+.++++++.+++.+..++.++ .|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 2358999999877788999998865311110 112457889999999988888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEec-CcEEEEEcC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1046 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~G~ 1046 (1326)
||+|||+|+.+|+||||||||+|||+.++..+++.|++++ +.|.|||++|||+. .+...+||+++|++ .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 45999999999986 57778999999973 267778888
Q ss_pred CCC
Q 046656 1047 LGS 1049 (1326)
Q Consensus 1047 ~~~ 1049 (1326)
+.+
T Consensus 558 p~~ 560 (607)
T 3bk7_A 558 PMG 560 (607)
T ss_dssp CEE
T ss_pred HHH
Confidence 743
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-57 Score=559.71 Aligned_cols=201 Identities=23% Similarity=0.288 Sum_probs=167.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE-----
Confidence 577888876552 1 36899999999999999999999999999999999876 35788875
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
...+||++|+....+.+||.|++........ . ..+.++++++.+++.+..++.++ .|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHH
Confidence 1358999999877788999998765311110 0 12357889999999888877764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEec-CcEEEEEcC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1046 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~G~ 1046 (1326)
||+|||+|+.+|++|||||||+|||+.++..+++.|++++ +.|.|||++|||++ ++...|||+++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999987 45999999999986 57788999999984 267888898
Q ss_pred CC
Q 046656 1047 LG 1048 (1326)
Q Consensus 1047 ~~ 1048 (1326)
+.
T Consensus 488 ~~ 489 (538)
T 1yqt_A 488 PM 489 (538)
T ss_dssp CE
T ss_pred HH
Confidence 74
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-56 Score=544.69 Aligned_cols=214 Identities=21% Similarity=0.242 Sum_probs=170.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|++..++ + ..|+++|++|++||++||+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe--
Confidence 467777765542 1 35778899999999999999999999999999999887 45899987653
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.++|++|+....+..||+|++.+... .. ... ....++++++.+++.+..++.++ .|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~--~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASK--DA--LST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCS--ST--TCT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred -------eeEeechhcccccCCCHHHHHHHhhh--hc--cch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 47999998777778899999986321 11 111 12347889999999988888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecC-cEEEEEcC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGP 1046 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g-g~~~~~G~ 1046 (1326)
||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||++ ++...|||+++|+++ |.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999975 5899999999986 577789999999842 44555665
Q ss_pred CCCChhhHHHHHh
Q 046656 1047 LGSNSSDLISYLQ 1059 (1326)
Q Consensus 1047 ~~~~~~~~~~~f~ 1059 (1326)
.......+..|+.
T Consensus 472 ~~~~~~~~~~~~~ 484 (538)
T 3ozx_A 472 PVTLKTGMNEFLR 484 (538)
T ss_dssp CEEHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 5333333445554
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-55 Score=562.10 Aligned_cols=187 Identities=22% Similarity=0.285 Sum_probs=150.1
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccC-CCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH-DVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~-d~~~~~ 212 (1326)
++.+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+ +.+++.
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTT
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccC
Confidence 345679999999999999999999999999999999995 222 3433211 1247899997 367889
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccccCc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLVGDE 291 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~ 291 (1326)
+||.|++.+ ...+. ...++.+++.+||. +..+..
T Consensus 511 ltv~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~---- 545 (986)
T 2iw3_A 511 TSVLDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMP---- 545 (986)
T ss_dssp SBHHHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSB----
T ss_pred CcHHHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCC----
Confidence 999999976 11100 01245678899994 455544
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
+..|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ . +.+++.++|+..++.++||+|++|+
T Consensus 546 -~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~ 619 (986)
T 2iw3_A 546 -ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYE 619 (986)
T ss_dssp -GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999987 2 4566668999999999999999999
Q ss_pred CCeEE-EEcChhhHH
Q 046656 372 DGQIV-YQGPCELVL 385 (1326)
Q Consensus 372 ~G~iv-~~G~~~~~~ 385 (1326)
+|+++ +.|+++++.
T Consensus 620 ~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 620 GLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTEEEEEESCHHHHH
T ss_pred CCeeecCCCCHHHHH
Confidence 99997 789887653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-54 Score=548.54 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=136.6
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHH---------------------HHHhcccCCCCc----eeeEEEECCcc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLL---------------------LALAGQLDSSLK----VSGRVTYNGHD 190 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~ 190 (1326)
..++|+|||++|++||+++|+||||||||||+ +.+.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 788887777521 25677788766
Q ss_pred CCCCCccceEEEEccCCC-------------------CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCch
Q 046656 191 MNEFVPQRTAAYISQHDV-------------------HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDL 251 (1326)
Q Consensus 191 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~ 251 (1326)
.... +++.++||+|... .++.+||+||+.+......... ..+....
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~--------~~~~~~~------ 174 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK--------EAQIARL------ 174 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh--------hhHHHHH------
Confidence 5322 2344556655432 2457899999987432210000 0000000
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc-ccccccCccccCCChhhhHHHHHHHHhhcCCc--cceEecCCCCCCH
Q 046656 252 FIDVFMKAAATEGQEANVLTDYYLKVLGLDVC-ADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL--ALFMDEISNGLDS 328 (1326)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~ 328 (1326)
...+.... -.+++.+||++. .| +.+..|||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 175 -----------~~~~~~~~-~~~l~~~gL~~~~~~-----~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 175 -----------ILREIRDR-LGFLQNVGLDYLTLS-----RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTT-----CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----------HHHHHHHH-HHHHHHcCCchhhhc-----CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000111 235888999764 34 3455799999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhH
Q 046656 329 STTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELV 384 (1326)
Q Consensus 329 ~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~ 384 (1326)
.++.++++.|+++.. . +.+|+.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 999999999999864 3 56677789998764 569999999 89999999998766
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-54 Score=534.95 Aligned_cols=190 Identities=18% Similarity=0.186 Sum_probs=157.0
Q ss_pred EeeecceeEEeCC-----eEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCC
Q 046656 836 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLV 910 (1326)
Q Consensus 836 ~vL~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~ 910 (1326)
.+++|+|+++++| |++||+||||||||||+++|+|..++ .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 78999999999999999999998874 46652 11 23589999987766678
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
||+|++... .+. .... .+.++++++.++|.+..++.++ .|||||||||+|||+|+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhc--cccc---HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 111 1111 2356789999999998888764 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEec-CcEEEEEcCCCCC
Q 046656 991 GLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGSN 1050 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gg~~~~~G~~~~~ 1050 (1326)
|||+.++..+++.|+++. +.|.|||++|||+. ++...+||+++|++ .|+++..|++.+.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 999999999999999986 45999999999986 57788999999985 2788999987543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=396.54 Aligned_cols=218 Identities=22% Similarity=0.284 Sum_probs=190.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++.. .+...+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 48899999887521 123579999999999999999999999999999999999887 4699999999987
Q ss_pred Ccc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 KQE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
... ..++.+||++|++.+++.+||+||+.|+...+ ..+.++.+++++++|+.+||.+..++.++ .|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hC
Confidence 532 23567999999999999999999999986543 34566667789999999999998888764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.++ |.|||++||+++ .+.+.|||+++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999754 999999999986 57788999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
++.|+.
T Consensus 243 v~~g~~ 248 (366)
T 3tui_C 243 IEQDTV 248 (366)
T ss_dssp EECCBH
T ss_pred EEEcCH
Confidence 999985
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=376.95 Aligned_cols=220 Identities=25% Similarity=0.361 Sum_probs=185.5
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 5678888877421 112469999999999999999999999999999999999887 46999999998864
Q ss_pred ccc-------ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 046656 890 QET-------FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESG 961 (1326)
Q Consensus 890 ~~~-------~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~ 961 (1326)
... .++.+||++|++.+++.+||+||+.++...+.......++..+.+.++++.++|.+. .+..++ .
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----Q 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----G
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh-----h
Confidence 321 124599999999999999999999997654432334556666778999999999875 366653 5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4578999999996 79
Q ss_pred EEEEcCCC
Q 046656 1041 EIYVGPLG 1048 (1326)
Q Consensus 1041 ~~~~G~~~ 1048 (1326)
++..|+..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 99988864
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=428.37 Aligned_cols=195 Identities=24% Similarity=0.352 Sum_probs=145.4
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHH---------hhhcCCCC--C--CeeE------EEEEEcCccCCccc-----
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYIS------GNITISGYPKKQET----- 892 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~L~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 892 (1326)
.|+|||++|++|++++|+|+||||||||+ +.+.+... + .... +.+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 33333211 0 0223 34556554432100
Q ss_pred ---------------------------------------ccceEEEeecCCCCCC-------------------------
Q 046656 893 ---------------------------------------FTRISGYCEQNDIHSP------------------------- 908 (1326)
Q Consensus 893 ---------------------------------------~~~~~gyv~Q~~~~~~------------------------- 908 (1326)
..+..|++.++..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777665544
Q ss_pred -------CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046656 909 -------LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-QSLVGLPGESGLSTEQRKRLTIAVELVANP 980 (1326)
Q Consensus 909 -------~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p 980 (1326)
.+||.|++.|... . ....++.++|+.+||.... ++.+ ..|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhhCC
Confidence 3678888876431 1 1223567899999997532 2332 369999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 981 ---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 981 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|+|++|. +||++++.|+.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999999888999999999975 456799999993 47999999986
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=394.35 Aligned_cols=214 Identities=26% Similarity=0.377 Sum_probs=190.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 377888888763 3579999999999999999999999999999999999987 4599999999987
Q ss_pred Ccc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
... ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.++|.++.++.+. .||||||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqr 139 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQR 139 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHH
Confidence 532 33567999999999999999999999987654 34566677789999999999999888764 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|+|||||||||+||+..+..+++.|+++.++ |.|||++|||++ ++..++||+++|++ |+++..|+
T Consensus 140 QRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~ 217 (381)
T 3rlf_A 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (381)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeC
Confidence 9999999999999999999999999999999999999999755 999999999986 68889999999985 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 218 ~ 218 (381)
T 3rlf_A 218 P 218 (381)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=382.68 Aligned_cols=215 Identities=25% Similarity=0.376 Sum_probs=186.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++..+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 478999998874 12459999999999999999999999999999999999887 4699999999987
Q ss_pred Cc-----ccccceEEEeecCCC-CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 KQ-----ETFTRISGYCEQNDI-HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~~-----~~~~~~~gyv~Q~~~-~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
.. ..+++.+||++|++. .+..+||+||+.|+.... ..+.++.+++++++++.++|.++.++.++ .|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cC
Confidence 31 124567999999863 445789999999986542 34556667789999999999998888764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999997 56778999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
++.|+.
T Consensus 223 ~~~g~~ 228 (275)
T 3gfo_A 223 ILQGNP 228 (275)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999986
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=393.29 Aligned_cols=214 Identities=27% Similarity=0.409 Sum_probs=187.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 377889888763 3579999999999999999999999999999999999987 4599999999876
Q ss_pred ----Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 889 ----KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 889 ----~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 22 234577999999999999999999999975433 23445566789999999999999988864 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|.|||++|||++ ++..++||+++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999888765 45999999999986 67889999999985 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
..|+.
T Consensus 219 ~~g~~ 223 (359)
T 3fvq_A 219 QTASP 223 (359)
T ss_dssp EEECH
T ss_pred EEeCH
Confidence 99986
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=370.51 Aligned_cols=212 Identities=23% Similarity=0.277 Sum_probs=183.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 77889887763 2569999999999999999999999999999999999887 45899999998864
Q ss_pred ccc------cc-ceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 890 QET------FT-RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 890 ~~~------~~-~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
... ++ +.+||++|++.+++.+||+||+.++...+ ..+....++.++++++.++|.+..++.++ .|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----EL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hC
Confidence 321 22 56999999999999999999999876443 23344445678999999999988887764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+ +.||++++|++ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 34 78999999986 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
+.|+.
T Consensus 219 ~~g~~ 223 (224)
T 2pcj_A 219 GEITR 223 (224)
T ss_dssp EEEEC
T ss_pred EEeee
Confidence 98863
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=376.99 Aligned_cols=214 Identities=27% Similarity=0.346 Sum_probs=184.9
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 378999988763 3569999999999999999999999999999999999887 4599999999876
Q ss_pred C--c---ccccceEEEeecCCCCCCCCCHHHHHHHHH-HhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 K--Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~--~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
. . ..+++.+||++|++.+++.+||+||+.|+. ... ..+..+.+++++++++.++|.+..++.++ .|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hC
Confidence 3 1 123567999999999999999999999864 222 23344455678999999999988887764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999986 56678999999986 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
+.|+.
T Consensus 239 ~~g~~ 243 (263)
T 2olj_A 239 EEGKP 243 (263)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=377.05 Aligned_cols=214 Identities=21% Similarity=0.257 Sum_probs=184.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 378899988763 3569999999999999999999999999999999999887 4599999999876
Q ss_pred Cc----------------ccccceEEEeecCCCCCCCCCHHHHHHHHH-HhhccCCCCHHHHHHHHHHHHHHcCCccc-c
Q 046656 889 KQ----------------ETFTRISGYCEQNDIHSPLVTVYESLLYSA-WLRLRTEVDSETRKMFIEEIMELVELKPL-R 950 (1326)
Q Consensus 889 ~~----------------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~ 950 (1326)
.. ..+++.+||++|++.+++.+||+||+.|+. ..+ ..+..+.+++++++++.++|.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhh
Confidence 41 123467999999999999999999999864 222 23344455678999999999988 7
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhc
Q 046656 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFD 1030 (1326)
Q Consensus 951 ~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1030 (1326)
++.++ .|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||
T Consensus 148 ~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d 221 (262)
T 1b0u_A 148 GKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 221 (262)
T ss_dssp TSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCS
T ss_pred cCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCC
Confidence 87764 59999999999999999999999999999999999999999999999877999999999986 5667899
Q ss_pred eeeEEecCcEEEEEcCC
Q 046656 1031 ELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1031 ~v~~l~~gg~~~~~G~~ 1047 (1326)
++++|++ |+++..|+.
T Consensus 222 ~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 222 HVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp EEEEEET-TEEEEEECH
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999986 799998875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=391.36 Aligned_cols=213 Identities=22% Similarity=0.359 Sum_probs=182.4
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccC----CCCCc-cceEEEEc
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM----NEFVP-QRTAAYIS 204 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~ 204 (1326)
++++++.+++|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ ....+ ++.+|||+
T Consensus 10 ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vf 86 (359)
T 3fvq_A 10 LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLV 86 (359)
T ss_dssp EEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred EEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEe
Confidence 334455677999999999999999999999999999999999999998 99999999987 22222 46799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|+..++|.+||+||+.|+.+.++... .+....++++++.+||++..
T Consensus 87 Q~~~l~p~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~ 132 (359)
T 3fvq_A 87 QEGVLFPHLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELA 132 (359)
T ss_dssp TTCCCCTTSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGT
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHh
Confidence 99999999999999999876543211 01123467789999999877
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
| +.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+. .+++++.++|+..++..+|
T Consensus 133 ~-----r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~a 206 (359)
T 3fvq_A 133 G-----RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYA 206 (359)
T ss_dssp T-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHC
T ss_pred c-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHC
Confidence 6 455679999999999999999999999999999999999999999988887554 3567777999999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|++|++|+++..|+++++.
T Consensus 207 Dri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 207 DRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999999885
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=386.72 Aligned_cols=207 Identities=22% Similarity=0.323 Sum_probs=181.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 209 (1326)
..++|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 457999999999999999999999999999999999999998 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.|+.+..+... .+....++++|+.+||++..+
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~---- 158 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHD---- 158 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTT----
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhc----
Confidence 999999999999876543210 112234677899999988766
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.+..|||||||||+|||||+.+|++|||||||||||+.++.++++.|+++.+.. +.+|+.++|+..++.++||+|++
T Consensus 159 -~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 159 -SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp -CCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred -CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 4556799999999999999999999999999999999999999999999986543 56677789999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999884
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.15 Aligned_cols=214 Identities=24% Similarity=0.320 Sum_probs=185.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 478899988763 3569999999999999999999999999999999999887 4599999999886
Q ss_pred Cc--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 046656 889 KQ--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++.+||++|++.+++.+||+||+.|..... ..+..+.++.++++++.++|.+..++.++ .|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHH
Confidence 43 224567999999999999999999999865433 22334445678999999999988887764 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999976 46667999999986 79999887
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 230 ~ 230 (256)
T 1vpl_A 230 V 230 (256)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=388.97 Aligned_cols=212 Identities=24% Similarity=0.362 Sum_probs=184.6
Q ss_pred ccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCC
Q 046656 131 TTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVH 209 (1326)
Q Consensus 131 ~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~ 209 (1326)
+++++..++|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..+
T Consensus 10 ~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l 86 (381)
T 3rlf_A 10 TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYAL 86 (381)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCC
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcC
Confidence 34445677999999999999999999999999999999999999998 9999999999876544 3679999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
+|.+||+||+.|+.+..+... .+....++++++.+||++..+
T Consensus 87 ~p~ltV~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~---- 128 (381)
T 3rlf_A 87 YPHLSVAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLD---- 128 (381)
T ss_dssp CTTSCHHHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT----
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhc----
Confidence 999999999999876543210 112234678899999988766
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.+..|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+.. +++++.++|+..++..+||+|++
T Consensus 129 -r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~v 206 (381)
T 3rlf_A 129 -RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVV 206 (381)
T ss_dssp -CCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEE
T ss_pred -CChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEE
Confidence 4566799999999999999999999999999999999999999999999986543 56667789999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|+++..|+++++.
T Consensus 207 l~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 207 LDAGRVAQVGKPLELY 222 (381)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEEeCHHHHH
Confidence 9999999999999884
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=375.70 Aligned_cols=217 Identities=25% Similarity=0.276 Sum_probs=184.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478899988763 3569999999999999999999999999999999999887 4599999999886
Q ss_pred Ccc----cccceEEEeecCCCCCCCCCHHHHHHHHHHh-hccC---------CCCHHHHHHHHHHHHHHcCCcccccccc
Q 046656 889 KQE----TFTRISGYCEQNDIHSPLVTVYESLLYSAWL-RLRT---------EVDSETRKMFIEEIMELVELKPLRQSLV 954 (1326)
Q Consensus 889 ~~~----~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~l-r~~~---------~~~~~~~~~~v~~~l~~l~l~~~~~~~v 954 (1326)
... ..++.+||++|++.+++.+||+||+.++... +... .....+.++.++++++.++|.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 432 1345699999999888999999999986532 1110 0122334567899999999998888876
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeE
Q 046656 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 955 g~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++
T Consensus 152 ~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 4 59999999999999999999999999999999999999999999999877999999999987 56678999999
Q ss_pred EecCcEEEEEcCC
Q 046656 1035 MKRGGQEIYVGPL 1047 (1326)
Q Consensus 1035 l~~gg~~~~~G~~ 1047 (1326)
|++ |++++.|+.
T Consensus 226 l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 226 MFN-GQIIAEGRG 237 (257)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEeCH
Confidence 985 799998876
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=385.01 Aligned_cols=215 Identities=23% Similarity=0.364 Sum_probs=188.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 588899987762 12358999999999999999999999999999999999987 4699999999886
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ...++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHH
Confidence 43 234577999999999999999999999976543 23455566789999999999999888764 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998754 999999999986 67788999999985 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 230 ~ 230 (355)
T 1z47_A 230 P 230 (355)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=413.24 Aligned_cols=195 Identities=28% Similarity=0.352 Sum_probs=149.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhc-CC---------CCCC---eeEE------EEEEcCccCCccc-----
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GR---------KTGG---YISG------NITISGYPKKQET----- 892 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~---------~~~~---~~~G------~i~i~g~~~~~~~----- 892 (1326)
.|+|||++|++||++||+|+||||||||+++|. |. ..++ ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999964 21 0111 2344 5889987753110
Q ss_pred -----------------ccceEEEeecCCCCC----------------------C-------------------------
Q 046656 893 -----------------FTRISGYCEQNDIHS----------------------P------------------------- 908 (1326)
Q Consensus 893 -----------------~~~~~gyv~Q~~~~~----------------------~------------------------- 908 (1326)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357777743221 0
Q ss_pred -------CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046656 909 -------LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVELVANP 980 (1326)
Q Consensus 909 -------~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p 980 (1326)
.+|+.|++.|... . .. ...+.++|+.++|.. ..++.++ .|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCC
Confidence 3578888776321 1 11 223578999999987 5566553 59999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 981 ---SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 981 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|++++.|+.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 999999999999999999999999999888999999999975 446899999995 46899999985
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=385.60 Aligned_cols=213 Identities=26% Similarity=0.375 Sum_probs=187.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67888887662 3469999999999999999999999999999999999987 45999999998864
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ..++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHH
Confidence 32 23567999999999999999999999986543 23455556789999999999998888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998754 999999999986 67788999999985 799999985
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=385.97 Aligned_cols=213 Identities=26% Similarity=0.341 Sum_probs=185.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECC
Confidence 67888887763 3569999999999999999999999999999999999987 45999999998874
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ..++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 32 23567999999999999999999999975432 22334445679999999999998888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999986 67788999999985 799999986
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=386.26 Aligned_cols=213 Identities=26% Similarity=0.339 Sum_probs=187.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECc
Confidence 67888887763 3569999999999999999999999999999999999987 46999999998753
Q ss_pred c-------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 890 Q-------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 890 ~-------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
. ...++.+|||+|+..+++.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++.++ .|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----EL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cC
Confidence 2 123567999999999999999999999986543 23455556789999999999998888764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998754 999999999986 67788999999985 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
+..|+.
T Consensus 219 ~~~g~~ 224 (372)
T 1g29_1 219 QQVGSP 224 (372)
T ss_dssp EEEECH
T ss_pred EEeCCH
Confidence 999985
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=367.66 Aligned_cols=213 Identities=24% Similarity=0.334 Sum_probs=181.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 378899988763 3569999999999999999999999999999999999887 4599999999886
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCC
Q 046656 889 KQET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVE-LKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 889 ~~~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~vg~~~~~~LS 963 (1326)
.... .++.+||++|++.+++.+||+||+.++.... ...++.++.++++++.++ |.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 4321 2345999999999999999999999864211 122334456888999995 887777765 3699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1043 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~ 1043 (1326)
||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999975 57788999999985 79999
Q ss_pred EcCC
Q 046656 1044 VGPL 1047 (1326)
Q Consensus 1044 ~G~~ 1047 (1326)
.|+.
T Consensus 220 ~g~~ 223 (240)
T 1ji0_A 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred EcCH
Confidence 8874
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=373.34 Aligned_cols=213 Identities=23% Similarity=0.306 Sum_probs=184.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478899988763 3579999999999999999999999999999999999887 4589999999987
Q ss_pred Ccc---cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 046656 889 KQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE 965 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG 965 (1326)
... ..++.+||++|+..+++.+||+||+.++.... .....++.++++++.+++.++.++.++ .||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 532 34567899999998888899999999875432 112234568999999999998888764 59999
Q ss_pred HHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 966 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 966 qrqrl~ia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
|||||+|||||+. +|++|||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999986 56778999999985
Q ss_pred cEEEEEcCCC
Q 046656 1039 GQEIYVGPLG 1048 (1326)
Q Consensus 1039 g~~~~~G~~~ 1048 (1326)
|++++.|+..
T Consensus 224 G~i~~~g~~~ 233 (266)
T 4g1u_C 224 GKLVACGTPE 233 (266)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEEcCHH
Confidence 7999999863
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=385.67 Aligned_cols=213 Identities=26% Similarity=0.373 Sum_probs=186.3
Q ss_pred EEEecccceeccchhhhccccccCceE--eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~--vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
++++|+++.++ ++. +|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEE
Confidence 67888887763 234 9999999999999999999999999999999999987 459999999987
Q ss_pred CCc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046656 888 KKQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961 (1326)
Q Consensus 888 ~~~------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 961 (1326)
+.. ...++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 532 234678999999999999999999999975432 23455566789999999999999888764 5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++..++|++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 999999999986 67788999999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
++..|+.
T Consensus 219 i~~~g~~ 225 (353)
T 1oxx_K 219 LVQVGKP 225 (353)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999985
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=385.52 Aligned_cols=213 Identities=23% Similarity=0.349 Sum_probs=180.8
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 78899988763 3569999999999999999999999999999999999987 45999999998864
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ..++.+|||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.++|.++.++.++ .|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 32 23567999999999999999999999975332 23455566789999999999998888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998755 999999999986 67788999999985 799999985
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-40 Score=380.90 Aligned_cols=211 Identities=25% Similarity=0.354 Sum_probs=181.5
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHI 210 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~ 210 (1326)
++++++++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..++
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 87 (359)
T 2yyz_A 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALY 87 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCC
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccC
Confidence 3344567999999999999999999999999999999999999998 9999999999865443 46799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+++||+||+.|+.+.++.. + .+....++++++.+||++..+.
T Consensus 88 ~~ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r---- 129 (359)
T 2yyz_A 88 PHMTVFENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDR---- 129 (359)
T ss_dssp TTSCHHHHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTS----
T ss_pred CCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcC----
Confidence 9999999999986543210 0 0112346778999999887664
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|
T Consensus 130 -~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl 207 (359)
T 2yyz_A 130 -KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTHDQAEAMTMASRIAVF 207 (359)
T ss_dssp -CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEE
T ss_pred -ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 456799999999999999999999999999999999999999999999986543 456666899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|+++..|+++++.
T Consensus 208 ~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 208 NQGKLVQYGTPDEVY 222 (359)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999999874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=379.75 Aligned_cols=208 Identities=25% Similarity=0.374 Sum_probs=180.2
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 213 (1326)
+++++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 102 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHM 102 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTS
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCC
Confidence 4456999999999999999999999999999999999999998 9999999998865433 46799999999999999
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.|+.+..+... .+....++++++.+||++..+ +.+
T Consensus 103 tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~-----r~~ 143 (355)
T 1z47_A 103 TVYDNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYAN-----RFP 143 (355)
T ss_dssp CHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT-----SCG
T ss_pred CHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhc-----CCc
Confidence 99999999865432110 011234677899999988776 455
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..+||+|++|++|
T Consensus 144 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G 222 (355)
T 1z47_A 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GVTSVFVTHDQEEALEVADRVLVLHEG 222 (355)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999986543 456666899999999999999999999
Q ss_pred eEEEEcChhhHH
Q 046656 374 QIVYQGPCELVL 385 (1326)
Q Consensus 374 ~iv~~G~~~~~~ 385 (1326)
+++..|+++++.
T Consensus 223 ~i~~~g~~~~l~ 234 (355)
T 1z47_A 223 NVEQFGTPEEVY 234 (355)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEEcCHHHHH
Confidence 999999999874
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=380.68 Aligned_cols=212 Identities=26% Similarity=0.400 Sum_probs=182.1
Q ss_pred ccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCC
Q 046656 131 TTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVH 209 (1326)
Q Consensus 131 ~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~ 209 (1326)
+++++++++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..+
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 86 (362)
T 2it1_A 10 VKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWAL 86 (362)
T ss_dssp EEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCC
T ss_pred EEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCccc
Confidence 33445567999999999999999999999999999999999999998 9999999999865443 4679999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++++||+||+.|+.+.++... .+....++++++.+||++..+
T Consensus 87 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~---- 128 (362)
T 2it1_A 87 YPHMTVYKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLN---- 128 (362)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTT----
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhh----
Confidence 999999999999865432110 011234677899999988766
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
+.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++
T Consensus 129 -r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~v 206 (362)
T 2it1_A 129 -RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQAEALAMADRIAV 206 (362)
T ss_dssp -CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred -CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence 4556799999999999999999999999999999999999999999999986543 45566689999999999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|+++..|+++++.
T Consensus 207 l~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 207 IREGEILQVGTPDEVY 222 (362)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=363.24 Aligned_cols=207 Identities=20% Similarity=0.321 Sum_probs=175.4
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCC--CCC---ccceEEEEccCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN--EFV---PQRTAAYISQHDVH 209 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~ 209 (1326)
+++++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+
T Consensus 35 ~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l 111 (263)
T 2olj_A 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111 (263)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC
T ss_pred CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcC
Confidence 3456999999999999999999999999999999999999997 999999998874 111 13569999999989
Q ss_pred CCCCCHHHHHHhhh-hhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 210 IGEMTVRETLAFSA-RCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
++.+||+||+.|+. +..+.. + .+....++.+++.+||++..+.
T Consensus 112 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~-- 155 (263)
T 2olj_A 112 FPHMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGLKDKAHA-- 155 (263)
T ss_dssp CTTSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTS--
T ss_pred CCCCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcC--
Confidence 99999999999964 322210 0 0012235678999999877664
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..+||+|+
T Consensus 156 ---~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~ 230 (263)
T 2olj_A 156 ---YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVL 230 (263)
T ss_dssp ---CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEE
T ss_pred ---ChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEE
Confidence 45579999999999999999999999999999999999999999999998653 5667778999999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++++.|+++++.
T Consensus 231 ~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 231 FMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999998874
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=409.37 Aligned_cols=195 Identities=25% Similarity=0.352 Sum_probs=144.7
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhh-hcCCC-------CC----------------CeeEE-------EEEEcC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV-LAGRK-------TG----------------GYISG-------NITISG 885 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~-L~g~~-------~~----------------~~~~G-------~i~i~g 885 (1326)
+|+|||++|++||++||+|+||||||||++. |+|.. .+ ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999997 76431 11 12467 789998
Q ss_pred ccCCcccc----------------------cceEEEeec----------------------CCCCCC-------------
Q 046656 886 YPKKQETF----------------------TRISGYCEQ----------------------NDIHSP------------- 908 (1326)
Q Consensus 886 ~~~~~~~~----------------------~~~~gyv~Q----------------------~~~~~~------------- 908 (1326)
.++..... .|..||.++ +..+.+
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 77532110 011122221 111111
Q ss_pred -------------------CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHH
Q 046656 909 -------------------LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 909 -------------------~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~vg~~~~~~LSgGqrq 968 (1326)
.+|+.|++.|.. .. ...+++.++|+.++|... .++.+ ..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVGLGYLRLGQPA-----TELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcCCCcccccCCc-----ccCCHHHHH
Confidence 234555544321 11 122357899999999873 35554 369999999
Q ss_pred HHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe-----cCcE
Q 046656 969 RLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQ 1040 (1326)
Q Consensus 969 rl~ia~aL~~~---p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gg~ 1040 (1326)
||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|+++ .+ +.+|++++|. ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999888999999999975 34 7899999995 4689
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 816 Iv~~g~~ 822 (842)
T 2vf7_A 816 LVAQGTP 822 (842)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999975
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=367.61 Aligned_cols=207 Identities=25% Similarity=0.324 Sum_probs=175.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-----CccceEEEEccCC-CCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-----VPQRTAAYISQHD-VHI 210 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~ 210 (1326)
..+|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999997 99999999987421 1235799999985 345
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+||+.|+....+... .+....++++++.+||++..+.
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~---- 139 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDK---- 139 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTS----
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcC----
Confidence 58999999999876533210 1112346778999999887764
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
.+..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+.. +++|++++|+..++.++||+|++|
T Consensus 140 -~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 140 -PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp -BGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEE
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 455799999999999999999999999999999999999999999999986333 566777899999999999999999
Q ss_pred cCCeEEEEcChhhHHH
Q 046656 371 SDGQIVYQGPCELVLD 386 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~~ 386 (1326)
++|+++++|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=365.77 Aligned_cols=206 Identities=28% Similarity=0.348 Sum_probs=178.3
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIG 211 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 211 (1326)
+.+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 4467999999999999999999999999999999999999998 9999999999876543 356999999988888
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
.+||+||+.|+....... +....++++++.+||.+..+..
T Consensus 99 ~~tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~---- 138 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRD---- 138 (266)
T ss_dssp CCBHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSB----
T ss_pred CCCHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCC----
Confidence 999999999975432100 0112356789999998877644
Q ss_pred cccCCChhhhHHHHHHHHhhc------CCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 292 MVRGISGGQKKRLTTGEMMVG------PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
+..|||||||||+|||||+. +|++|||||||+|||+.++.++++.|+++.+ .++.+|+.++|+..++..+||
T Consensus 139 -~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 139 -YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp -GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCS
T ss_pred -cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCC
Confidence 45799999999999999999 9999999999999999999999999999865 356677889999999999999
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|+++++|+++++.
T Consensus 217 ~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 217 RIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEEEETTEEEEEECHHHHC
T ss_pred EEEEEECCEEEEEcCHHHHh
Confidence 99999999999999998873
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=379.19 Aligned_cols=209 Identities=22% Similarity=0.285 Sum_probs=181.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ ++ +|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 46777877652 34 9999999999999999999999999999999999987 46999999998874
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ...++.+|||+|+..+++.+||+||+.|+...+.. +.. ++++++++.++|.++.++.++ .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 3 23456799999999999999999999997654321 112 568999999999999888764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999986 67788999999985 789999975
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=380.19 Aligned_cols=211 Identities=26% Similarity=0.365 Sum_probs=180.8
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC------CCc-cceEEEEc
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE------FVP-QRTAAYIS 204 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~ 204 (1326)
++++.+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.+|||+
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~ 87 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVF 87 (372)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEEC
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEe
Confidence 3344567999999999999999999999999999999999999998 9999999988754 322 46799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|+..+++++||+||+.|+.+..+... .+....++++++.+||++..
T Consensus 88 Q~~~l~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~ 133 (372)
T 1g29_1 88 QSYALYPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELL 133 (372)
T ss_dssp SCCCCCTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGT
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHh
Confidence 99999999999999999865432210 01123467789999998877
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+. .+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..+|
T Consensus 134 ~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~a 207 (372)
T 1g29_1 134 NR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMG 207 (372)
T ss_dssp TC-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHC
T ss_pred cC-----CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhC
Confidence 64 456799999999999999999999999999999999999999999999986543 456666899999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|++|++|+++..|+++++.
T Consensus 208 dri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 208 DRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=380.14 Aligned_cols=209 Identities=24% Similarity=0.357 Sum_probs=174.0
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 212 (1326)
++.+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..++++
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 97 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 97 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------C
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCC
Confidence 34467999999999999999999999999999999999999998 9999999999865443 4679999999999999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.|+.+.++.. + .+....++++++.+||++..+ +.
T Consensus 98 ltv~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~-----r~ 138 (372)
T 1v43_A 98 MTVYENIAFPLKIKKFP----------K------------------------DEIDKRVRWAAELLQIEELLN-----RY 138 (372)
T ss_dssp CCHHHHHHTTCC--CCC----------H------------------------HHHHHHHHHHHHHTTCGGGTT-----SC
T ss_pred CCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhc-----CC
Confidence 99999999976543211 0 011234677899999988776 45
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++
T Consensus 139 ~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~ 217 (372)
T 1v43_A 139 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNR 217 (372)
T ss_dssp TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 56799999999999999999999999999999999999999999999986543 45666689999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 046656 373 GQIVYQGPCELVL 385 (1326)
Q Consensus 373 G~iv~~G~~~~~~ 385 (1326)
|+++..|+++++.
T Consensus 218 G~i~~~g~~~~l~ 230 (372)
T 1v43_A 218 GQLLQIGSPTEVY 230 (372)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999999874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=377.65 Aligned_cols=209 Identities=24% Similarity=0.345 Sum_probs=180.2
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCC
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDV 208 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~ 208 (1326)
++++++.+ +|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..
T Consensus 7 l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~ 82 (348)
T 3d31_A 7 LSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYS 82 (348)
T ss_dssp EEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred EEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcc
Confidence 33444555 999999999999999999999999999999999999998 9999999998865433 467999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+++++||+||+.|+.+..+... . ..++++++.+||++..|.
T Consensus 83 l~~~ltv~enl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~-- 123 (348)
T 3d31_A 83 LFPHMNVKKNLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDR-- 123 (348)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTS--
T ss_pred cCCCCCHHHHHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcC--
Confidence 9999999999999765432110 0 235678999999887764
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|+
T Consensus 124 ---~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~ 199 (348)
T 3d31_A 124 ---NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIA 199 (348)
T ss_dssp ---CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEE
T ss_pred ---ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 456799999999999999999999999999999999999999999999986543 5566678999999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+++..|+++++.
T Consensus 200 vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 200 VVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EESSSCEEEEECHHHHH
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999999884
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=356.58 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=171.2
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQH 206 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 206 (1326)
++.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|+
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 90 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSS
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecC
Confidence 33457999999999999999999999999999999999999987 9999999998865432 1569999999
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
+.+++.+||+||+.++....+.. + .+....++++++.+||++..+.
T Consensus 91 ~~l~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~ 136 (224)
T 2pcj_A 91 HYLIPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGLGDKLSR 136 (224)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTC
T ss_pred cccCCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhC
Confidence 99999999999999976543210 0 0012235678999999887664
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|+.++|+...+ ++||+
T Consensus 137 -----~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~ 208 (224)
T 2pcj_A 137 -----KPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELA-ELTHR 208 (224)
T ss_dssp -----CGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-TTSSE
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-HhCCE
Confidence 45579999999999999999999999999999999999999999999998653 55666678887776 89999
Q ss_pred EEEecCCeEEEEcCh
Q 046656 367 IILLSDGQIVYQGPC 381 (1326)
Q Consensus 367 vilL~~G~iv~~G~~ 381 (1326)
|++|++|+++++|++
T Consensus 209 v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 209 TLEMKDGKVVGEITR 223 (224)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEEeee
Confidence 999999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=362.91 Aligned_cols=216 Identities=26% Similarity=0.279 Sum_probs=174.8
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC--CCCCeeEEEEEEcCcc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYISGNITISGYP 887 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~~~~~G~i~i~g~~ 887 (1326)
++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|. .+ +.+|+|.++|.+
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~ 68 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEE
Confidence 67888887763 35699999999999999999999999999999999997 43 679999999988
Q ss_pred CCccc---c-cceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCC-
Q 046656 888 KKQET---F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVEL-KPLRQSLVGLPGESG- 961 (1326)
Q Consensus 888 ~~~~~---~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l-~~~~~~~vg~~~~~~- 961 (1326)
+.... . ++.++|++|++.+++.+||+|++.+.............+..+.++++++.++| .++.++.++ .
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cC
Confidence 64321 1 23489999999999999999999886532111112233445668899999999 577777653 4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHH-hceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA-FDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++ |+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~ 221 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GR 221 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998767999999999986 35455 599999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 222 i~~~g~~ 228 (250)
T 2d2e_A 222 VVATGGP 228 (250)
T ss_dssp EEEEESH
T ss_pred EEEEeCH
Confidence 9999875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=364.66 Aligned_cols=207 Identities=23% Similarity=0.297 Sum_probs=175.1
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC----------CC------ccc
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE----------FV------PQR 198 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~ 198 (1326)
+.+++|+|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHH
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhc
Confidence 3456999999999999999999999999999999999999987 9999999988751 11 135
Q ss_pred eEEEEccCCCCCCCCCHHHHHHhhh-hhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046656 199 TAAYISQHDVHIGEMTVRETLAFSA-RCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKV 277 (1326)
Q Consensus 199 ~~~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (1326)
.++||+|++.+++.+||+||+.|+. ...+.. + .+....++++++.
T Consensus 94 ~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~ 139 (262)
T 1b0u_A 94 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAK 139 (262)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHH
T ss_pred ceEEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHHHHHHHHH
Confidence 6999999999999999999999864 322110 0 0012235678999
Q ss_pred cCCccc-ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 046656 278 LGLDVC-ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356 (1326)
Q Consensus 278 lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 356 (1326)
+||++. .+. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+. +++|+.++|+
T Consensus 140 ~~L~~~~~~~-----~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd 212 (262)
T 1b0u_A 140 VGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHE 212 (262)
T ss_dssp TTCCHHHHTS-----CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSC
T ss_pred cCCCchhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCC
Confidence 999876 664 45579999999999999999999999999999999999999999999998653 5566678999
Q ss_pred hhhHHhhCCeEEEecCCeEEEEcChhhHH
Q 046656 357 APETYDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 357 ~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
..++..+||+|++|++|++++.|+++++.
T Consensus 213 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 213 MGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999998774
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=359.59 Aligned_cols=208 Identities=21% Similarity=0.302 Sum_probs=177.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ + +|+|||++|++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 46778877662 1 49999999999 9999999999999999999999887 45899999998864
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ...++.+||++|++.+++.+||+||+.|+...+ .....+++++++++.++|.+..++.++ .|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHH
Confidence 3 234567999999999999999999999864321 111224568999999999988887764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998754 999999999976 56788999999986 799998874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=366.55 Aligned_cols=217 Identities=23% Similarity=0.323 Sum_probs=180.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECc
Confidence 67888887763100 001569999999999999999999999999999999999887 46999999998865
Q ss_pred cccccceEEEeecCC-CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCCCCHHH
Q 046656 890 QETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK--PLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~-~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~vg~~~~~~LSgGq 966 (1326)
...+++.+||++|++ ..++.+||+||+.|+.... .+.++.+++++++++.++|. +..++.++ .|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHH
Confidence 333456799999995 4567789999999864322 11112234588999999998 88887764 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999767999999999987 46667999999985 78998887
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 222 ~ 222 (266)
T 2yz2_A 222 R 222 (266)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=378.42 Aligned_cols=210 Identities=21% Similarity=0.272 Sum_probs=179.8
Q ss_pred ccccce--eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC-----CC-ccceEEEEc
Q 046656 133 KKKHLT--ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE-----FV-PQRTAAYIS 204 (1326)
Q Consensus 133 ~~~~~~--iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~ 204 (1326)
+++.++ +|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.+|||+
T Consensus 12 ~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~ 88 (353)
T 1oxx_K 12 VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVF 88 (353)
T ss_dssp EEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEE
T ss_pred EECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEe
Confidence 334455 999999999999999999999999999999999999998 9999999988754 22 246799999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|+..+++++||+||+.|+.+.++... .+....++++++.+||++..
T Consensus 89 Q~~~l~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~ 134 (353)
T 1oxx_K 89 QTWALYPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVL 134 (353)
T ss_dssp TTSCCCTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGT
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHh
Confidence 99999999999999999865432110 01123467789999998877
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+. .+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++
T Consensus 135 ~~-----~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 135 NH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp TS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHC
T ss_pred cC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC
Confidence 64 456799999999999999999999999999999999999999999999986543 456666899999999999
Q ss_pred CeEEEecCCeEEEEcChhhHH
Q 046656 365 DDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~ 385 (1326)
|+|++|++|+++..|+++++.
T Consensus 209 dri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 209 DRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=368.88 Aligned_cols=217 Identities=24% Similarity=0.374 Sum_probs=179.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 588999988773 3569999999999999999999999999999999999887 4589999999876
Q ss_pred C--c---ccccceEEEeecCCCCC--CCCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 046656 889 K--Q---ETFTRISGYCEQNDIHS--PLVTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGES 960 (1326)
Q Consensus 889 ~--~---~~~~~~~gyv~Q~~~~~--~~~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~ 960 (1326)
. . ..+++.+||++|++.+. +.+||+||+.++...... .....++..++++++++.++|.+..++.++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG----- 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence 4 2 22456799999987543 356999999885321100 011122334668999999999988888764
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE--EEEecCCcHHHHHHhceeeEEecC
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTV--VCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|| |++||+++ ++.+.||++++|++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~- 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD- 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 599999999999999999999999999999999999999999999997669999 99999986 46678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 239 G~i~~~g~~ 247 (279)
T 2ihy_A 239 GQSIQQGAV 247 (279)
T ss_dssp TEEEEEEEH
T ss_pred CEEEEECCH
Confidence 799998875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=359.59 Aligned_cols=207 Identities=25% Similarity=0.295 Sum_probs=176.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 213 (1326)
.+++|+|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 456999999999999999999999999999999999999988 999999998875421 235799999999889999
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+||+.|+....+.. . .+....++++++.+||++..+.. +
T Consensus 104 tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~-----~ 144 (256)
T 1vpl_A 104 QGIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDR-----V 144 (256)
T ss_dssp BHHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSB-----G
T ss_pred cHHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhcCC-----h
Confidence 9999999865432210 0 00112356789999998877654 4
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. .+++|+.++|+..++..+||+|++|++|
T Consensus 145 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tiiivtHd~~~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNG 222 (256)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh--CCCEEEEEcCCHHHHHHHCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999999854 3566777899999999999999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
++++.|+++++.+
T Consensus 223 ~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 223 TIVETGTVEELKE 235 (256)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999988754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=355.60 Aligned_cols=207 Identities=21% Similarity=0.251 Sum_probs=171.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEEccCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYISQHDVH 209 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 209 (1326)
+++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999998 9999999998876543 2359999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc-cccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA-DTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~v 288 (1326)
++.+||+||+.++......... .+ .+....++++++.+||.+.. +
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~------------------------~~~~~~~~~~l~~~~l~~~~~~--- 140 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SG------------------------EERRKRALECLKMAELEERFAN--- 140 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CH------------------------HHHHHHHHHHHHHTTCCGGGTT---
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CH------------------------HHHHHHHHHHHHHCCCChhhhh---
Confidence 9999999999997654311000 00 01123356778999997643 4
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.++++.+.. +.+|+.++|+.. ..++||+|+
T Consensus 141 --~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 141 --HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDIN-VARFGERII 216 (235)
T ss_dssp --CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHH-HHTTSSEEE
T ss_pred --CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEcCCHH-HHHhCCEEE
Confidence 4566799999999999999999999999999999999999999999999986533 455666888886 568999999
Q ss_pred EecCCeEEEEcChhhH
Q 046656 369 LLSDGQIVYQGPCELV 384 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~ 384 (1326)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999988764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=362.02 Aligned_cols=216 Identities=25% Similarity=0.337 Sum_probs=174.8
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHI 210 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 210 (1326)
+++++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 94 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccC
Confidence 3456999999999999999999999999999999999999987 9999999998865432 34699999999889
Q ss_pred CCCCHHHHHHhhhhh--ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 211 GEMTVRETLAFSARC--QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~--~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
+.+||+||+.++... .+. + ....+ ..... ...+....++++++.+||++..+..
T Consensus 95 ~~~tv~enl~~~~~~~~~~~---~---~~~~~----~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~- 150 (257)
T 1g6h_A 95 KEMTVLENLLIGEICPGESP---L---NSLFY----KKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRK- 150 (257)
T ss_dssp GGSBHHHHHHGGGTSTTSCH---H---HHHHH----CSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSB-
T ss_pred CCCcHHHHHHHHHhhhccCc---c---ccccc----ccccC-------------CHHHHHHHHHHHHHHcCCchhhCCC-
Confidence 999999999987532 110 0 00000 00000 0001123356789999998777654
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ . +++|+.++|+.+++..+||+|+
T Consensus 151 ----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 151 ----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp ----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEE
T ss_pred ----chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999865 3 5566778999999999999999
Q ss_pred EecCCeEEEEcChhh
Q 046656 369 LLSDGQIVYQGPCEL 383 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~ 383 (1326)
+|++|++++.|++++
T Consensus 225 ~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 225 VMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEETTEEEEEEESHH
T ss_pred EEECCEEEEEeCHHH
Confidence 999999999999888
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=359.60 Aligned_cols=220 Identities=25% Similarity=0.286 Sum_probs=180.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 488999988763 3569999999999999999999999999999999999842226799999999876
Q ss_pred Ccc---cc-cceEEEeecCCCCCCCCCHHHHHHHHHH-hh---ccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 046656 889 KQE---TF-TRISGYCEQNDIHSPLVTVYESLLYSAW-LR---LRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGE 959 (1326)
Q Consensus 889 ~~~---~~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~-lr---~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~ 959 (1326)
... .. ++.+||++|++.+++.+||.|++.+... .+ .....+.++.++.++++++.++|. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 431 11 2348999999999999999999987541 21 111223444456789999999996 56666543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHH-hceeeEEecC
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1038 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~g 1038 (1326)
..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 149999999999999999999999999999999999999999999998767999999999986 34444 899999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 241 G~i~~~g~~ 249 (267)
T 2zu0_C 241 GRIVKSGDF 249 (267)
T ss_dssp TEEEEEECT
T ss_pred CEEEEEcCH
Confidence 799999986
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=356.08 Aligned_cols=206 Identities=23% Similarity=0.337 Sum_probs=172.3
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHI 210 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 210 (1326)
+.+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 93 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCC
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccC
Confidence 3456999999999999999999999999999999999999988 9999999998865432 23599999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-Cccccccccc
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-LDVCADTLVG 289 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg 289 (1326)
+.+||+||+.|+.... .... +....++.+++.++ |++..+.
T Consensus 94 ~~ltv~enl~~~~~~~-~~~~----------------------------------~~~~~~~~~l~~~~~l~~~~~~--- 135 (240)
T 1ji0_A 94 PELTVYENLMMGAYNR-KDKE----------------------------------GIKRDLEWIFSLFPRLKERLKQ--- 135 (240)
T ss_dssp TTSBHHHHHHGGGTTC-CCSS----------------------------------HHHHHHHHHHHHCHHHHTTTTS---
T ss_pred CCCcHHHHHHHhhhcC-CCHH----------------------------------HHHHHHHHHHHHcccHhhHhcC---
Confidence 9999999999864211 0000 01122456788884 8765553
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .+++|+.++|+..++.++||+|++
T Consensus 136 --~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~--~g~tvi~vtHd~~~~~~~~d~v~~ 211 (240)
T 1ji0_A 136 --LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYV 211 (240)
T ss_dssp --BSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEE
T ss_pred --ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHHHHhCCEEEE
Confidence 4567999999999999999999999999999999999999999999999865 355666689999899999999999
Q ss_pred ecCCeEEEEcChhhHH
Q 046656 370 LSDGQIVYQGPCELVL 385 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~~ 385 (1326)
|++|++++.|+++++.
T Consensus 212 l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 212 LETGQIVLEGKASELL 227 (240)
T ss_dssp EETTEEEEEEEHHHHH
T ss_pred EECCEEEEEcCHHHHh
Confidence 9999999999988764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=353.45 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=174.1
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+
T Consensus 5 l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~------ 64 (253)
T 2nq2_C 5 LSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIEV------ 64 (253)
T ss_dssp EEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEEE------
T ss_pred EEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEE------
Confidence 778888877630 2469999999999999999999999999999999999887 45899982
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT-EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
++.+||++|++.+++.+||+||+.++....... .......++.++++++.++|.+..++.++ .|||||||
T Consensus 65 ----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~q 135 (253)
T 2nq2_C 65 ----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQ 135 (253)
T ss_dssp ----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHH
T ss_pred ----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHH
Confidence 356899999998888999999999864321110 01123334568999999999988887764 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |+ ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999999999999999999999999999876 999999999986 56678999999996 57 888875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=366.53 Aligned_cols=210 Identities=26% Similarity=0.350 Sum_probs=175.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||++.|+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 53 ~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i 118 (306)
T 3nh6_A 53 RIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDI 118 (306)
T ss_dssp CEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 689999998874 22469999999999999999999999999999999999887 4699999999987
Q ss_pred Ccc---cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046656 889 KQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPG 958 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~ 958 (1326)
... .+++.+|||+|++.+++ .||+||+.|+.. ... .+.++++++.+++.+.. ++.+|..
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~-----~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 187 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRV-----TAG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER- 187 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTST-----TCC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT-
T ss_pred ccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcc-----cCC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC-
Confidence 542 35678999999998875 599999998632 111 23366777777776543 3334433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|||++||+++ .+ ..+|+|++|++
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~aD~i~vl~~- 263 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TV-VNADQILVIKD- 263 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HH-HTCSEEEEEET-
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HH-HcCCEEEEEEC-
Confidence 347999999999999999999999999999999999999999999999864 799999999986 34 45999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 264 G~iv~~G~~ 272 (306)
T 3nh6_A 264 GCIVERGRH 272 (306)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 799999985
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=350.54 Aligned_cols=201 Identities=21% Similarity=0.316 Sum_probs=171.8
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999988 999999998875432 2467999999999999999999
Q ss_pred HHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCC
Q 046656 218 TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297 (1326)
Q Consensus 218 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 297 (1326)
|+.|+....+. .. ....++++++.+||++..+. .+..||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDR-----KPARLS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTC-----CGGGSC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcC-----ChhhCC
Confidence 99986533210 00 01235678999999877664 455799
Q ss_pred hhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEE
Q 046656 298 GGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVY 377 (1326)
Q Consensus 298 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 377 (1326)
|||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+.. +++|+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986533 4556668899999999999999999999999
Q ss_pred EcChhhHH
Q 046656 378 QGPCELVL 385 (1326)
Q Consensus 378 ~G~~~~~~ 385 (1326)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=353.45 Aligned_cols=193 Identities=21% Similarity=0.341 Sum_probs=168.9
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
+|+|+|++|++||+++|+||||||||||+++|+|..+ +. |+|.++|.+... ..+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 8999999999999999999999999999999999887 46 999999987632 23456799999999888899999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc-------EEEEe
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS-------IIFMD 986 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~-------illLD 986 (1326)
||+.++.. . ... ++.++++++.++|.+..++.++ .||||||||++|||||+.+|+ +||||
T Consensus 92 e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 1 111 3458899999999988887754 599999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|||+|||+.++..+++.|+++.++|+|||++||+++ .+...+|++++|++ |++++.|+.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 217 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR 217 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999777999999999976 56678999999985 789998875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=346.86 Aligned_cols=198 Identities=21% Similarity=0.289 Sum_probs=170.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++|+++.++ + .+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 578899987762 3 69999999999999999999999999999999999887 4599999999876
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ..++.+||++|++.+++.+||+||+.+....+.. .. . ++.++++++.++|.+. ++.+ ..|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 4 3567799999999999999999999987543321 11 1 3457899999999887 6665 369999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...+|+++++.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 999999999999999999999999999999999999998766899999999987 4666788888764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=353.59 Aligned_cols=212 Identities=25% Similarity=0.399 Sum_probs=175.1
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++|+++.++. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 36889999987720 13469999999999999999999999999999999999887 459999999988
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV-------GLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v-------g~~ 957 (1326)
+.. ..+++.+||++|++.+++ .||+||+.|+. .... ++.++++++.+++.+..+... +..
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC-----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 753 224567999999998876 59999998752 1112 234678888888877655432 221
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999985 59999999999863 4 56999999986
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 219 -G~i~~~g~~ 227 (247)
T 2ff7_A 219 -GKIVEQGKH 227 (247)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799998874
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=360.11 Aligned_cols=214 Identities=23% Similarity=0.302 Sum_probs=173.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||++.++.. +.+.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 48899999877420 12469999999999999999999999999999999999887 4589999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHH-----HHHHHHHHHHHc--CCcccccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSET-----RKMFIEEIMELV--ELKPLRQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~-----~~~~v~~~l~~l--~l~~~~~~~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.|+... . ...+. ....++++++.+ ++....+..+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~---- 154 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR---T-PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG---- 154 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS---C-CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc---C-ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc----
Confidence 43 224567999999998877 5999999885321 1 11011 122346677777 6766666554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ..+.||++++|++
T Consensus 155 -~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~ 231 (271)
T 2ixe_A 155 -NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE 231 (271)
T ss_dssp -TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 36999999999999999999999999999999999999999999999864 4899999999975 3346999999986
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 232 -G~i~~~g~~ 240 (271)
T 2ixe_A 232 -GSVCEQGTH 240 (271)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799998875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=359.94 Aligned_cols=208 Identities=26% Similarity=0.388 Sum_probs=167.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|||+.|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+| ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 46999999999999999999999999999999999999998 9999999999876543 46799999998877 56
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMV 293 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 293 (1326)
||+|||.|+....+ . .++....+.++ ....++. +....+|.+|. ..
T Consensus 143 Tv~eNi~~~~~~~~----~---~~~~~~~~~~~------------------------l~~~i~~--lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----N---DEVEAAAQAAG------------------------IHDAIMA--FPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----H---HHHHHHHHHHT------------------------CHHHHHH--STTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC----H---HHHHHHHHHhC------------------------cHHHHHh--ccchhhhHhcC-Cc
Confidence 99999998753211 0 01110000000 0111222 34466788874 56
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+|||||+.+|+||||||||+|||+.+...|.+.|+++.. + .++|+++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~-~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--N-RTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--T-SEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--C-CEEEEEEcChHHHHc-CCEEEEEECC
Confidence 68999999999999999999999999999999999999999999998743 3 455568898887766 9999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
+|++.|+++++..
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-38 Score=352.46 Aligned_cols=205 Identities=25% Similarity=0.372 Sum_probs=172.8
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCC-CCCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHD-VHIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 215 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 56999999999999999999999999999999999999987 999999998875332346799999984 56778999
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc--ccccccccCccc
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD--VCADTLVGDEMV 293 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 293 (1326)
+||+.|+.... .... +....++++++.+||+ +..+. .+
T Consensus 97 ~enl~~~~~~~-~~~~----------------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~ 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPDR----------------------------------DPVPLVKKAMEFVGLDFDSFKDR-----VP 136 (266)
T ss_dssp HHHHHHTTTTT-CTTS----------------------------------CSHHHHHHHHHHTTCCHHHHTTC-----CG
T ss_pred HHHHHHHHHhc-CCHH----------------------------------HHHHHHHHHHHHcCcCCcccccC-----Ch
Confidence 99999864321 1000 0012356778999998 76664 45
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++..+||+|++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999998653 556667899988898999999999999
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=350.50 Aligned_cols=210 Identities=27% Similarity=0.427 Sum_probs=173.3
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++ +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhh
Confidence 56788887662 12459999999999999999999999999999999999887 45899999998764
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccc-------cCCCC
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLV-------GLPGE 959 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v-------g~~~~ 959 (1326)
. ..+++.+||++|++.+++ .||+||+.|+.. .... ++.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998877 599999987521 1112 234788899999987765542 11 23
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ .+ +.+|++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 6999999999975 33 56999999986 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 214 ~i~~~g~~ 221 (243)
T 1mv5_A 214 QITGSGKH 221 (243)
T ss_dssp EECCCSCH
T ss_pred EEEEeCCH
Confidence 88888874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=352.57 Aligned_cols=209 Identities=27% Similarity=0.319 Sum_probs=168.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCC--CCC---ccceEEEEccCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN--EFV---PQRTAAYISQHDVHI 210 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~ 210 (1326)
.+++|+|||+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 456999999999999999999999999999999999999998 999999998875 322 135799999986533
Q ss_pred --CCCCHHHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 211 --GEMTVRETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 211 --~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
+.+||+||+.|+.... +. +.. +. .+....++++++.+||++..+..
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~---~~~--------------~~--------------~~~~~~~~~~l~~~gl~~~~~~~ 158 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGV---YQD--------------ID--------------DEIRNEAHQLLKLVGMSAKAQQY 158 (279)
T ss_dssp SCTTSBHHHHHHTTC--------------------------CC--------------HHHHHHHHHHHHHTTCGGGTTSB
T ss_pred cCCCCCHHHHHHhhhhhcccc---ccC--------------Cc--------------HHHHHHHHHHHHHcCChhHhcCC
Confidence 3569999999864210 00 000 00 01122356789999998877654
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEE-EEEecChhhHHhhCCe
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAV-ISLLQPAPETYDLFDD 366 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~i-i~i~q~~~~~~~~~D~ 366 (1326)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... +.|+. +.++|+..++.++||+
T Consensus 159 -----~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~ 232 (279)
T 2ihy_A 159 -----IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSK 232 (279)
T ss_dssp -----GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCE
T ss_pred -----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCE
Confidence 4579999999999999999999999999999999999999999999998654 44440 6688999899999999
Q ss_pred EEEecCCeEEEEcChhhH
Q 046656 367 IILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~ 384 (1326)
|++|++|++++.|+++++
T Consensus 233 v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 233 ILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEEETTEEEEEEEHHHH
T ss_pred EEEEECCEEEEECCHHHH
Confidence 999999999999998876
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=343.87 Aligned_cols=201 Identities=26% Similarity=0.383 Sum_probs=162.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999988 9999999998865432 357999999988775
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc-------c
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA-------D 285 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------d 285 (1326)
.||+||+.|+... ... ..++.+++.+|+.+.. +
T Consensus 97 ~tv~enl~~~~~~----~~~------------------------------------~~~~~~l~~~~l~~~~~~~~~gl~ 136 (247)
T 2ff7_A 97 RSIIDNISLANPG----MSV------------------------------------EKVIYAAKLAGAHDFISELREGYN 136 (247)
T ss_dssp SBHHHHHTTTCTT----CCH------------------------------------HHHHHHHHHHTCHHHHHTSTTGGG
T ss_pred ccHHHHHhccCCC----CCH------------------------------------HHHHHHHHHhChHHHHHhCcchhh
Confidence 6999999885310 000 0112234444444322 3
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
+.++ +.+..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. . +.+|++++|+...+. .||
T Consensus 137 ~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-g~tviivtH~~~~~~-~~d 211 (247)
T 2ff7_A 137 TIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--K-GRTVIIIAHRLSTVK-NAD 211 (247)
T ss_dssp CBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--T-TSEEEEECSSGGGGT-TSS
T ss_pred hhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--C-CCEEEEEeCCHHHHH-hCC
Confidence 3333 3467899999999999999999999999999999999999999999999973 2 455666788877664 599
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|++++.|+++++.
T Consensus 212 ~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 212 RIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=345.32 Aligned_cols=208 Identities=23% Similarity=0.288 Sum_probs=164.8
Q ss_pred cccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc--cCCCCceeeEEEECCccCCCCCc----cceEEEEccCC
Q 046656 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ--LDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHD 207 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d 207 (1326)
++.+++|+|+|+.+++|++++|+||||||||||+++|+|. ++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 3446799999999999999999999999999999999998 6665 9999999998865432 23489999999
Q ss_pred CCCCCCCHHHHHHhhhhh-ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCC-ccccc
Q 046656 208 VHIGEMTVRETLAFSARC-QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL-DVCAD 285 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~d 285 (1326)
.+++.+||+||+.++... .+.... . .+....++++++.+|| .+..+
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~gl~~~~~~ 137 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVG--------V------------------------AEFWTKVKKALELLDWDESYLS 137 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCC--------H------------------------HHHHHHHHHHHHHHTCCGGGGG
T ss_pred ccccCCCHHHHHHHHHHhhccccCC--------H------------------------HHHHHHHHHHHHHcCCChhHhc
Confidence 999999999999986431 110000 0 0111235678999999 46666
Q ss_pred ccccCccccC-CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-
Q 046656 286 TLVGDEMVRG-ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL- 363 (1326)
Q Consensus 286 t~vg~~~~~~-LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~- 363 (1326)
.. +.. |||||||||+||+||+.+|+++||||||+|||+.++..+++.|+++.+ .+++|+.++|+..++..+
T Consensus 138 ~~-----~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~ 210 (250)
T 2d2e_A 138 RY-----LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQ 210 (250)
T ss_dssp SB-----TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSC
T ss_pred CC-----cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhc
Confidence 44 445 999999999999999999999999999999999999999999998743 356677788988888888
Q ss_pred CCeEEEecCCeEEEEcChhh
Q 046656 364 FDDIILLSDGQIVYQGPCEL 383 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~~~ 383 (1326)
||+|++|++|++++.|+++.
T Consensus 211 ~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 211 PDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CSEEEEEETTEEEEEESHHH
T ss_pred CCEEEEEECCEEEEEeCHHH
Confidence 59999999999999999873
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=343.88 Aligned_cols=206 Identities=18% Similarity=0.207 Sum_probs=171.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++.. ...+.+|+|+|++|+ ||+++|+||||||||||+++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5678888776310 011569999999999 9999999999999999999999987 5 4899999998754
Q ss_pred cccccceEE-EeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHH
Q 046656 890 QETFTRISG-YCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 890 ~~~~~~~~g-yv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGqr 967 (1326)
....++.+| |++|++.+ .+||+||+.+...+. ... ++.++++++.++|. +..++.++ .||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GLD----RDLFLEMLKALKLGEEILRRKLY-----KLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CCC----HHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---chH----HHHHHHHHHHcCCChhHhcCChh-----hCCHHHH
Confidence 211255789 99999877 889999999865432 111 34578999999998 88777764 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhc-eeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D-~v~~l~~gg~~~~~G~ 1046 (1326)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++||+++ ++.+.+| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998743 9999999986 4667899 9999985 79999887
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
.
T Consensus 210 ~ 210 (263)
T 2pjz_A 210 V 210 (263)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=344.99 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=171.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++.. ..+.+|+|||++|++||+++|+||||||||||+++|+|..+ + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47899998877421 11359999999999999999999999999999999999875 3 79999999876
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~ 958 (1326)
.. ..+++.+||++|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+.. ++.++..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998876 599999987421 111 22356778887775543 2222222
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+..||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. + +.+|++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 347999999999999999999999999999999999999999999999864 8999999999873 3 56999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 229 G~i~~~g~~ 237 (260)
T 2ghi_A 229 GKIVEKGTH 237 (260)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 799998875
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=338.47 Aligned_cols=198 Identities=16% Similarity=0.214 Sum_probs=166.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
++++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCH
Confidence 457999999999999999999999999999999999999997 999982 3579999999988889999
Q ss_pred HHHHHhhhhhc-cCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 216 RETLAFSARCQ-GVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 216 ~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
+||+.|+.... +.... +. .+....++++++.+||++..+. .+.
T Consensus 84 ~enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~-----~~~ 127 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKR-----EFT 127 (253)
T ss_dssp HHHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTS-----BGG
T ss_pred HHHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcC-----Chh
Confidence 99999964321 10000 00 0011235678999999877664 455
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|++|+
T Consensus 128 ~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS-QNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT-SCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 79999999999999999999999999999999999999999999998653 25566778999999999999999999999
Q ss_pred EEEEcChhhH
Q 046656 375 IVYQGPCELV 384 (1326)
Q Consensus 375 iv~~G~~~~~ 384 (1326)
++.|+++++
T Consensus 207 -~~~g~~~~~ 215 (253)
T 2nq2_C 207 -FKFGETRNI 215 (253)
T ss_dssp -EEEEEHHHH
T ss_pred -EecCCHHHH
Confidence 999998876
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=344.50 Aligned_cols=209 Identities=20% Similarity=0.356 Sum_probs=166.1
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 56999999999999999999999999999999999999998 9999999998764332 356999999988776 6
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc--CCcccccccccCc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL--GLDVCADTLVGDE 291 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 291 (1326)
||+||+.|+.... .. . .+..+.. ....++.+++.+ ||+...+ +
T Consensus 108 tv~enl~~~~~~~--~~-~---~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~-----~ 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PT-M---EEITAVA------------------------MESGAHDFISGFPQGYDTEVG-----E 152 (271)
T ss_dssp BHHHHHHTTCSSC--CC-H---HHHHHHH------------------------HHHTCHHHHHHSTTGGGSBCC-----G
T ss_pred cHHHHHhhhcccC--Ch-H---HHHHHHH------------------------HHHhHHHHHHhhhcchhhhhc-----C
Confidence 9999999864211 00 0 0000000 001124456777 5654443 4
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... .+++|++++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW-ASRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT-TTSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 56689999999999999999999999999999999999999999999986432 2556666889887765 599999999
Q ss_pred CCeEEEEcChhhHHH
Q 046656 372 DGQIVYQGPCELVLD 386 (1326)
Q Consensus 372 ~G~iv~~G~~~~~~~ 386 (1326)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=341.71 Aligned_cols=221 Identities=24% Similarity=0.295 Sum_probs=172.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc--CCCCceeeEEEECCccCCCCCc----cceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL--DSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~ 209 (1326)
.+++|+|||+.+++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 32 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l 108 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 108 (267)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCC
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCccc
Confidence 456999999999999999999999999999999999984 455 8999999998765432 2348999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLV 288 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 288 (1326)
++.+||+|++.+...... . ..+. +. ....+....++++++.+||+ ...+.
T Consensus 109 ~~~~tv~e~~~~~~~~~~-------------~--~~~~-~~-----------~~~~~~~~~~~~~l~~~gl~~~~~~~-- 159 (267)
T 2zu0_C 109 IPGVSNQFFLQTALNAVR-------------S--YRGQ-ET-----------LDRFDFQDLMEEKIALLKMPEDLLTR-- 159 (267)
T ss_dssp CTTCBHHHHHHHHHHHHH-------------H--GGGC-CC-----------CCHHHHHHHHHHHHHHTTCCTTTTTS--
T ss_pred cccccHHHHHHHHHHhhh-------------h--hhcc-cc-----------CCHHHHHHHHHHHHHHcCCChhHhcC--
Confidence 999999999987532100 0 0000 00 00001123467789999996 44553
Q ss_pred cCcccc-CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh-CCe
Q 046656 289 GDEMVR-GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL-FDD 366 (1326)
Q Consensus 289 g~~~~~-~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~ 366 (1326)
.+. .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. .+++|+.++|+..++..+ ||+
T Consensus 160 ---~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tviivtHd~~~~~~~~~d~ 234 (267)
T 2zu0_C 160 ---SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD--GKRSFIIVTHYQRILDYIKPDY 234 (267)
T ss_dssp ---BTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--SSCEEEEECSSGGGGGTSCCSE
T ss_pred ---CcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEeeCHHHHHhhcCCE
Confidence 343 4999999999999999999999999999999999999999999998743 356677789998888776 899
Q ss_pred EEEecCCeEEEEcChhhHHHHHHhcCCC
Q 046656 367 IILLSDGQIVYQGPCELVLDFFESMGFK 394 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~~F~~lG~~ 394 (1326)
|++|++|++++.|+++++.. .+..||.
T Consensus 235 v~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 235 VHVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 99999999999999988753 4445443
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=341.79 Aligned_cols=202 Identities=22% Similarity=0.320 Sum_probs=165.7
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~- 89 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-
Confidence 456999999999999999999999999999999999999987 999999999875432 2457999999988776
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc------
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT------ 286 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------ 286 (1326)
.||+||+.|+... . .. ...++.+++.+|+.+..+.
T Consensus 90 ~tv~enl~~~~~~-~--~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~ 130 (243)
T 1mv5_A 90 GTIRENLTYGLEG-D--YT------------------------------------DEDLWQVLDLAFARSFVENMPDQLN 130 (243)
T ss_dssp EEHHHHTTSCTTS-C--SC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGG
T ss_pred ccHHHHHhhhccC-C--CC------------------------------------HHHHHHHHHHhChHHHHHhCccchh
Confidence 5999999885311 0 00 0113445677777665443
Q ss_pred -cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 287 -LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 287 -~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
.++ +.+..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++. . +++|+.++|+...+ ..||
T Consensus 131 ~~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-~~tvi~vtH~~~~~-~~~d 205 (243)
T 1mv5_A 131 TEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--K-GRTTLVIAHRLSTI-VDAD 205 (243)
T ss_dssp CEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--T-TSEEEEECCSHHHH-HHCS
T ss_pred chhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCChHHH-HhCC
Confidence 333 4567899999999999999999999999999999999999999999999874 2 45566678887766 4699
Q ss_pred eEEEecCCeEEEEcChhhHH
Q 046656 366 DIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~ 385 (1326)
+|++|++|++++.|+++++.
T Consensus 206 ~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 206 KIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp EEEEEETTEECCCSCHHHHH
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=335.35 Aligned_cols=197 Identities=24% Similarity=0.308 Sum_probs=169.1
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 214 (1326)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999986 3 999999988754332 356999999988889999
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
|+||+.++... .. . ...++++++.+||++..+. .+.
T Consensus 90 v~e~l~~~~~~-~~----------~----------------------------~~~~~~~l~~~~l~~~~~~-----~~~ 125 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT----------R----------------------------TELLNDVAGALALDDKLGR-----STN 125 (249)
T ss_dssp HHHHHHTTCSS-TT----------C----------------------------HHHHHHHHHHTTCGGGTTS-----BGG
T ss_pred HHHHHHHhhcc-CC----------c----------------------------HHHHHHHHHHcCChhHhcC-----Chh
Confidence 99999985211 00 0 0124667899999877664 455
Q ss_pred CCChhhhHHHHHHHHhhcCCc-------cceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 295 GISGGQKKRLTTGEMMVGPAL-------ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~-------illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.|||||||||+||+||+.+|+ +|||||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..+||++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 799999999999999999999 99999999999999999999999998653 556677899999999999999
Q ss_pred EEecCCeEEEEcChhhH
Q 046656 368 ILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~ 384 (1326)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=337.72 Aligned_cols=194 Identities=20% Similarity=0.186 Sum_probs=165.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEE-EEccCCCCCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA-YISQHDVHIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 215 (1326)
+++|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 569999999999 9999999999999999999999999 88 999999998875321245799 99999776 8999
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccccCcccc
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLVGDEMVR 294 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 294 (1326)
+||+.++..... . ....++.+++.+||+ +..+. .+.
T Consensus 91 ~enl~~~~~~~~--~------------------------------------~~~~~~~~l~~~gl~~~~~~~-----~~~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--L------------------------------------DRDLFLEMLKALKLGEEILRR-----KLY 127 (263)
T ss_dssp HHHHHHHHHHTC--C------------------------------------CHHHHHHHHHHTTCCGGGGGS-----BGG
T ss_pred HHHHHHhhhhcc--h------------------------------------HHHHHHHHHHHcCCChhHhcC-----Chh
Confidence 999998643210 0 011246678899998 76654 455
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC-eEEEecCC
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD-DIILLSDG 373 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D-~vilL~~G 373 (1326)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++. . +++.++|+..++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 799999999999999999999999999999999999999999998752 2 66668899889999999 99999999
Q ss_pred eEEEEcChhhHH
Q 046656 374 QIVYQGPCELVL 385 (1326)
Q Consensus 374 ~iv~~G~~~~~~ 385 (1326)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=358.73 Aligned_cols=210 Identities=21% Similarity=0.293 Sum_probs=176.1
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++||++.++. +++.+|+||||+|++||+++|+|||||||||||++|+|..+ .+|+|.++|.++
T Consensus 19 ~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 5899999988741 23569999999999999999999999999999999999874 589999999987
Q ss_pred Ccc---cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 046656 889 KQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGL------PGE 959 (1326)
Q Consensus 889 ~~~---~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~------~~~ 959 (1326)
... .+++.+|||+|+..+++ +||+||+.+.. ... ++.++++++.++|.++.++.... ...
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 542 34578999999999887 69999996421 111 24578999999998877766532 122
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.+|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .|+|+|++|||++ ....+||+++|++ |
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-N 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-T
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-C
Confidence 3499999999999999999999999999999999999999999999864 4899999999975 4566999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 230 ~i~~~g~~ 237 (390)
T 3gd7_A 230 KVRQYDSI 237 (390)
T ss_dssp EEEEESSH
T ss_pred EEEEECCH
Confidence 99999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=331.33 Aligned_cols=200 Identities=20% Similarity=0.333 Sum_probs=160.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 4788999887631 13469999999999999999999999999999999999887 4599999998
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCC
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPGESG 961 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~~~~ 961 (1326)
.+||++|++.+++. ||+||+.|+.. .... .++++++.+++.+..+. .++.+ ...
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 37999999988875 99999987521 1111 23445555555443222 22222 357
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ .+ +.+|++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999974 5554 4899999999975 33 56999999986 78
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998874
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=335.63 Aligned_cols=200 Identities=23% Similarity=0.338 Sum_probs=161.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999863 7999999998754332 357999999988775 6
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc-------CCcccccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL-------GLDVCADT 286 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 286 (1326)
||+||+.|+... .. + .+ ++.+++.+ ++++..||
T Consensus 108 tv~enl~~~~~~----~~-~--~~---------------------------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKLD----AT-D--EE---------------------------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCTT----CC-H--HH---------------------------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCCC----CC-H--HH---------------------------------HHHHHHHhCCHHHHHhccccccc
Confidence 999999985310 00 0 00 11122233 34455666
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+ +++|++++|+...+ ..||+
T Consensus 148 ~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~---~~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK---NRTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT---TSEEEEECSSGGGS-TTCSE
T ss_pred ccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHH-HhCCE
Confidence 665 45678999999999999999999999999999999999999999999998742 45566678887766 46999
Q ss_pred EEEecCCeEEEEcChhhHHH
Q 046656 367 IILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~ 386 (1326)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=359.29 Aligned_cols=201 Identities=23% Similarity=0.248 Sum_probs=163.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|||+.|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|++.+++
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 4569999999999999999999999999999999999986 5 8999999999876544 368999999998886
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC--
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD-- 290 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~-- 290 (1326)
+||+||+.+.... . ...++++++.+||++..+.....
T Consensus 108 ~tv~enl~~~~~~-----~------------------------------------~~~v~~~l~~~~L~~~~~~~p~~l~ 146 (390)
T 3gd7_A 108 GTFRKNLDPNAAH-----S------------------------------------DQEIWKVADEVGLRSVIEQFPGKLD 146 (390)
T ss_dssp EEHHHHHCTTCCS-----C------------------------------------HHHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred cCHHHHhhhcccc-----C------------------------------------HHHHHHHHHHhCCHHHHhhcccccc
Confidence 6999999742210 0 01134567777877655433221
Q ss_pred ----ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 291 ----EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 291 ----~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
+....|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+++++.++|+. +....||+
T Consensus 147 ~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDr 222 (390)
T 3gd7_A 147 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQ 222 (390)
T ss_dssp CEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSE
T ss_pred cccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCE
Confidence 2334599999999999999999999999999999999999999999998752 345666678876 56677999
Q ss_pred EEEecCCeEEEEcChhhHHH
Q 046656 367 IILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~ 386 (1326)
|++|++|++++.|+++++..
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998853
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=330.29 Aligned_cols=199 Identities=23% Similarity=0.397 Sum_probs=157.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++|+++.++. +++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 678899887631 12469999999999999999999999999999999999887 5799999998
Q ss_pred cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCCCC
Q 046656 890 QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPGESGL 962 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~~~~L 962 (1326)
.+||++|++. ++.+||+||+.|+... ..+ ..+++++.+++.+.. ++..+. .+..|
T Consensus 67 ------~i~~v~Q~~~-~~~~tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAW-IQNDSLRENILFGCQL------EEP----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCC-CCSEEHHHHHHTTSCC------CTT----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCc-CCCcCHHHHhhCcccc------CHH----HHHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 2899999976 4678999999875321 111 123334444432211 111222 13479
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK---NTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
|||||||++|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++. + +.+|++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 333 48999999999873 3 57999999986 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 205 ~i~~~g~~ 212 (237)
T 2cbz_A 205 KISEMGSY 212 (237)
T ss_dssp EEEEEECH
T ss_pred EEEEeCCH
Confidence 99998875
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=370.86 Aligned_cols=212 Identities=21% Similarity=0.312 Sum_probs=174.9
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++|+++.++. +.+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEE
Confidence 36899999988742 23469999999999999999999999999999999999887 469999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~ 957 (1326)
+.. ..+++.+|||+|++.+++. ||+||+.++. ...+. +.++++++..++.+. .++.++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR-----EDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC-----SSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC-----CCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 754 2356789999999988864 9999998752 11222 234556666665443 34445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|++||+++ ....+|++++|++
T Consensus 477 -~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 -GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE 552 (587)
T ss_dssp -SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET
T ss_pred -CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC
Confidence 34799999999999999999999999999999999999999999999975 5899999999986 3468999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 553 -G~i~~~g~~ 561 (587)
T 3qf4_A 553 -GKVAGFGTH 561 (587)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999986
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=326.45 Aligned_cols=192 Identities=17% Similarity=0.227 Sum_probs=158.2
Q ss_pred ccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCC
Q 046656 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 133 ~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 212 (1326)
+++. ++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.
T Consensus 19 ~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~ 92 (214)
T 1sgw_A 19 GYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRK 92 (214)
T ss_dssp ESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTT
T ss_pred EeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCC
Confidence 3344 7999999999999999999999999999999999999988 999999998875 235679999999988999
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+||+||+.++....+. .. + ...++++++.+||+.. + +.
T Consensus 93 ~tv~enl~~~~~~~~~-~~----------------------------------~-~~~~~~~l~~~gl~~~-~-----~~ 130 (214)
T 1sgw_A 93 ISVEDYLKAVASLYGV-KV----------------------------------N-KNEIMDALESVEVLDL-K-----KK 130 (214)
T ss_dssp SBHHHHHHHHHHHTTC-CC----------------------------------C-HHHHHHHHHHTTCCCT-T-----SB
T ss_pred CCHHHHHHHHHHhcCC-ch----------------------------------H-HHHHHHHHHHcCCCcC-C-----CC
Confidence 9999999987543221 00 0 1124667899999765 4 44
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..++|+|+++ .
T Consensus 131 ~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~v~~~-~ 207 (214)
T 1sgw_A 131 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE--KGIVIISSREELSYCDVNENLHKY-S 207 (214)
T ss_dssp GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH--HSEEEEEESSCCTTSSEEEEGGGG-B
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEe-C
Confidence 6679999999999999999999999999999999999999999999998643 455666788888888888887644 4
Q ss_pred CeE
Q 046656 373 GQI 375 (1326)
Q Consensus 373 G~i 375 (1326)
|+|
T Consensus 208 ~~~ 210 (214)
T 1sgw_A 208 TKI 210 (214)
T ss_dssp C--
T ss_pred Ccc
Confidence 444
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=370.71 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=175.9
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
..++++|++++++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEE
Confidence 36899999988752 23469999999999999999999999999999999999887 469999999998
Q ss_pred CCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 046656 888 KKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLP 957 (1326)
Q Consensus 888 ~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~ 957 (1326)
+.. ..+++.+|||+|++.+++. ||+||+.++. ...+. +.++++++..++.+.. ++.+|..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC-----CCCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 753 3456789999999988865 9999998752 11222 3366777777765433 3444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 958 ~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+ .+||||||||++|||||+++|++|+|||||||||+.++..+++.++++. +|+|+|+++|+++. .+.+|++++|++
T Consensus 475 g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~ 550 (578)
T 4a82_A 475 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIEN 550 (578)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEET
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC
Confidence 3 4799999999999999999999999999999999999999999999875 47999999999873 356999999985
Q ss_pred CcEEEEEcCC
Q 046656 1038 GGQEIYVGPL 1047 (1326)
Q Consensus 1038 gg~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 551 -G~i~~~g~~ 559 (578)
T 4a82_A 551 -GHIVETGTH 559 (578)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
Confidence 799999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=325.13 Aligned_cols=197 Identities=21% Similarity=0.303 Sum_probs=152.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv 85 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TI 85 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CH
Confidence 356999999999999999999999999999999999999998 99999998 48999999888775 99
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
+||+.|+.... + .......+..+ .+..++. +....++.++ +.+..
T Consensus 86 ~enl~~~~~~~------~--~~~~~~~~~~~------------------------l~~~~~~--~~~~~~~~~~-~~~~~ 130 (229)
T 2pze_A 86 KENIIFGVSYD------E--YRYRSVIKACQ------------------------LEEDISK--FAEKDNIVLG-EGGIT 130 (229)
T ss_dssp HHHHHTTSCCC------H--HHHHHHHHHTT------------------------CHHHHTT--STTGGGSCBC-TTCTT
T ss_pred HHHhhccCCcC------h--HHHHHHHHHhC------------------------cHHHHHh--Cccccccccc-CCCCc
Confidence 99999853210 0 00000000000 0111222 2223345554 34678
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSL-RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.+ ++.. .+++|+.++|+...+. .||+|++|++|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~---~~~tvi~vtH~~~~~~-~~d~v~~l~~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLK-KADKILILHEGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHHH-HCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh---CCCEEEEEcCChHHHH-hCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999864 4432 2456666788877664 599999999999
Q ss_pred EEEEcChhhHH
Q 046656 375 IVYQGPCELVL 385 (1326)
Q Consensus 375 iv~~G~~~~~~ 385 (1326)
+++.|+++++.
T Consensus 207 i~~~g~~~~~~ 217 (229)
T 2pze_A 207 SYFYGTFSELQ 217 (229)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998874
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=368.85 Aligned_cols=212 Identities=24% Similarity=0.327 Sum_probs=177.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEc
Confidence 5899999988741 11469999999999999999999999999999999999887 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR-------QSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.++.. .+.+ ++.++++++.+++.+.. |+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 54 235667999999998887 499999998531 1222 23478888888887644 3444443
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ |+|+|+++|+++. .+.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999865 9999999999873 357999999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b60_A 554 GIIVERGTH 562 (582)
T ss_dssp TEEEEEECH
T ss_pred CEEEEecCH
Confidence 799999985
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=328.64 Aligned_cols=199 Identities=24% Similarity=0.318 Sum_probs=153.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 56999999999999999999999999999999999999987 99999998 4899999976 5689999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc-ccccccccCccccC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD-VCADTLVGDEMVRG 295 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~~ 295 (1326)
||+.|+.... . + ...+..+. ..+++.+++. ...+|.++ +.+..
T Consensus 84 enl~~~~~~~---~--~---~~~~~~~~---------------------------~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE---E--P---YYRSVIQA---------------------------CALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC---T--T---HHHHHHHH---------------------------TTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC---H--H---HHHHHHHH---------------------------HhhHHHHHhcccccccccc-CCCCC
Confidence 9999864211 0 0 00000000 0012223332 12334443 55778
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|||||||||+|||||+.+|++++|||||+|||+.++..+++.+++......+++|+.++|+...+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999885211111245666678887665 57999999999999
Q ss_pred EEEcChhhHHH
Q 046656 376 VYQGPCELVLD 386 (1326)
Q Consensus 376 v~~G~~~~~~~ 386 (1326)
++.|+++++..
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999988753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=369.66 Aligned_cols=212 Identities=25% Similarity=0.337 Sum_probs=177.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++. +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 5899999988741 12469999999999999999999999999999999999887 4589999999886
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.++.. .+.+ ++.++++++.+++.+..+. .+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 43 345678999999998887 499999988531 1122 2347888999988765443 34433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ |+|+|+++|+++ ..+.+|++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 999999999986 3457999999986
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 554 G~i~~~g~~ 562 (582)
T 3b5x_A 554 GEIIERGRH 562 (582)
T ss_pred CEEEEECCH
Confidence 799999985
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=368.82 Aligned_cols=210 Identities=25% Similarity=0.385 Sum_probs=173.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 689999998874 12459999999999999999999999999999999999887 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.++. ...++ +.++++++.+++.+..+. .+|..
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~- 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGN-----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN- 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSS-----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH-
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC-
Confidence 53 345678999999998875 59999998752 11122 235666666666544333 33322
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|++||+++. + +.+|++++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~- 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD- 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-
Confidence 24699999999999999999999999999999999999999999999985 59999999999973 4 56999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 565 G~i~~~g~~ 573 (598)
T 3qf4_B 565 GEIVEMGKH 573 (598)
T ss_dssp SSEEECSCH
T ss_pred CEEEEECCH
Confidence 799999985
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=363.88 Aligned_cols=209 Identities=23% Similarity=0.393 Sum_probs=166.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+... ++.++||+|++.+++.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 429 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc
Confidence 356999999999999999999999999999999999999998 9999999999876543 4579999999887765
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
||+||+.++... ... .++.+..+.+++ +.. .-.+++..||.+|+ .
T Consensus 430 -tv~eni~~~~~~----~~~---~~~~~~~~~~~~------------------------~~~--~~~lp~g~~t~~~~-~ 474 (578)
T 4a82_A 430 -TVKENILLGRPT----ATD---EEVVEAAKMANA------------------------HDF--IMNLPQGYDTEVGE-R 474 (578)
T ss_dssp -BHHHHHGGGCSS----CCH---HHHHHHHHHTTC------------------------HHH--HHTSTTGGGCBCCG-G
T ss_pred -cHHHHHhcCCCC----CCH---HHHHHHHHHhCc------------------------HHH--HHhCcchhhhhhcc-C
Confidence 999999986321 000 111111110000 111 12356678899985 5
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
..+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++. .++ +++.++|+.+.+ ..||+|++|++
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~-t~i~itH~l~~~-~~~d~i~~l~~ 550 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDR-TTLIVAHRLSTI-THADKIVVIEN 550 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTS-EEEEECSSGGGT-TTCSEEEEEET
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCC-EEEEEecCHHHH-HcCCEEEEEEC
Confidence 66899999999999999999999999999999999999999999998863 244 555578887766 55999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+++++|+++++.+
T Consensus 551 G~i~~~g~~~el~~ 564 (578)
T 4a82_A 551 GHIVETGTHRELIA 564 (578)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=362.74 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=167.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 430 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS- 430 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-
Confidence 356999999999999999999999999999999999999998 9999999999876543 467999999988775
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.++.... . ..+..+..+.++ .+..+ -.+++..||.+|. .
T Consensus 431 ~tv~eni~~~~~~~---~----~~~~~~~~~~~~------------------------~~~~i--~~l~~g~~~~~~~-~ 476 (587)
T 3qf4_A 431 GTIKENLKWGREDA---T----DDEIVEAAKIAQ------------------------IHDFI--ISLPEGYDSRVER-G 476 (587)
T ss_dssp EEHHHHHTTTCSSC---C----HHHHHHHHHHTT------------------------CHHHH--HTSSSGGGCEECS-S
T ss_pred ccHHHHHhccCCCC---C----HHHHHHHHHHhC------------------------cHHHH--HhcccchhhHhcC-C
Confidence 59999999864211 0 011111111110 01111 2356677888885 5
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+.+|||||||||+|||||+.+|++++||||||+||+.++..+.+.++++. ++.+++.++|+...+ ..||+|++|++
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~l~~~-~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---KGCTTFIITQKIPTA-LLADKILVLHE 552 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---TTCEEEEEESCHHHH-TTSSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecChHHH-HhCCEEEEEEC
Confidence 66899999999999999999999999999999999999999999999863 345566688887665 58999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+++++|+++++.+
T Consensus 553 G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGFGTHKELLE 566 (587)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=360.56 Aligned_cols=202 Identities=22% Similarity=0.368 Sum_probs=165.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 56999999999999999999999999999999999999998 9999999999876543 357999999988876 5
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-------Ccccccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-------LDVCADT 286 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 286 (1326)
||+||+.++.. . .... .+ ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~---~~---------------------------------~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EYSR---EQ---------------------------------IEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CCCH---HH---------------------------------HHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CCCH---HH---------------------------------HHHHHHHcCCHHHHHhccccccc
Confidence 99999998641 0 0000 00 111222222 3446788
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+|+ ...+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ +++++.++|+...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGT-TTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEeccHHHH-HhCCE
Confidence 8885 4678999999999999999999999999999999999999999999998742 44555577877655 57999
Q ss_pred EEEecCCeEEEEcChhhHHH
Q 046656 367 IILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~~ 386 (1326)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=376.37 Aligned_cols=212 Identities=27% Similarity=0.400 Sum_probs=181.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+.. +++++|+|+|++|+||+++||+||||||||||+++|.|..+ +.+|+|.+||+++
T Consensus 415 ~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i 482 (1321)
T 4f4c_A 415 DITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDV 482 (1321)
T ss_dssp CEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred cEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccc
Confidence 69999999998632 23579999999999999999999999999999999999887 5699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-------LRQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~vg~~~ 958 (1326)
+. ..+++.+|||+|++.++. .|++|||.|+. .+.+ ++.+.++++..++.+ -.|+.+|..|
T Consensus 483 ~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 483 RDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp TTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred hhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccch----HHHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 64 346778999999998875 59999999862 1222 234777888877643 3466777655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
. +||||||||++||||++++|+||+||||||+||++++..+++.|+++. +|+|+|+++|+++ ..+.+|+|++|++
T Consensus 553 ~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~- 627 (1321)
T 4f4c_A 553 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKN- 627 (1321)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEET-
T ss_pred C-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeC-
Confidence 4 799999999999999999999999999999999999999999999876 4899999999987 4678999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 628 G~ive~Gth 636 (1321)
T 4f4c_A 628 GQVVEVGDH 636 (1321)
T ss_dssp TEEEEEECH
T ss_pred CeeeccCCH
Confidence 799999986
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=360.02 Aligned_cols=201 Identities=23% Similarity=0.368 Sum_probs=164.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 213 (1326)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 56999999999999999999999999999999999999998 9999999998865432 467999999988776 5
Q ss_pred CHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcC-------Ccccccc
Q 046656 214 TVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLG-------LDVCADT 286 (1326)
Q Consensus 214 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 286 (1326)
||+||+.++.. . .... .+ ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~---~~---------------------------------~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-G--EYTR---EQ---------------------------------IEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-C--CCCH---HH---------------------------------HHHHHHHCCCHHHHHhCcccccc
Confidence 99999998631 0 0000 00 112222222 3446678
Q ss_pred cccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.+|+ ....||||||||++|||||+.+|++++|||||+|||+.++..+.+.++++.+ +++++.++|+...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK---NKTVLVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC---CCEEEEEecCHHHH-HhCCE
Confidence 8885 4678999999999999999999999999999999999999999999998742 44555577877655 47999
Q ss_pred EEEecCCeEEEEcChhhHH
Q 046656 367 IILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 367 vilL~~G~iv~~G~~~~~~ 385 (1326)
|++|++|++++.|+++++.
T Consensus 548 i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLL 566 (582)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999885
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=359.86 Aligned_cols=209 Identities=25% Similarity=0.374 Sum_probs=166.4
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 442 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS- 442 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999998 9999999999876543 467999999988774
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.++.... .. .++.+..+.++ .+..++ .+++..||.+|+ .
T Consensus 443 ~tv~eni~~~~~~~---~~----~~~~~~~~~~~------------------------~~~~~~--~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 443 TTVKENLKYGNPGA---TD----EEIKEAAKLTH------------------------SDHFIK--HLPEGYETVLTD-N 488 (598)
T ss_dssp SBHHHHHHSSSTTC---CT----THHHHHTTTTT------------------------CHHHHH--TSTTGGGCBCHH-H
T ss_pred ccHHHHHhcCCCCC---CH----HHHHHHHHHhC------------------------CHHHHH--hccccccchhcC-C
Confidence 69999999863210 00 01110000000 011111 355677888884 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
..+|||||||||+|||||+.+|++++||||||+||+.++..+.+.++++. . +.+++.++|+...+. .||+|++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~-~~t~i~itH~l~~~~-~~d~i~~l~~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--E-GKTSIIIAHRLNTIK-NADLIIVLRD 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--T-TSEEEEESCCTTHHH-HCSEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--C-CCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 56899999999999999999999999999999999999999999999874 2 455566788877664 5999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+++++|+++++.+
T Consensus 565 G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 565 GEIVEMGKHDELIQ 578 (598)
T ss_dssp SSEEECSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=322.64 Aligned_cols=195 Identities=22% Similarity=0.369 Sum_probs=148.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.. +.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47788887631 358999999999999999999999999999999999887 6799999988
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCC
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQS-------LVGLPGESG 961 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~vg~~~~~~ 961 (1326)
.+||++|++.+++. ||+||+. +. + ... ..++++++.+++.+..+. .++.. ...
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 159 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcCc-cCc
Confidence 37999999988775 9999997 32 1 111 123455666666543222 22211 347
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++ ..+.||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4543 4899999999975 3456999999985 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|+.
T Consensus 236 i~~~g~~ 242 (290)
T 2bbs_A 236 SYFYGTF 242 (290)
T ss_dssp EEEEECH
T ss_pred EEEeCCH
Confidence 9999875
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=317.41 Aligned_cols=195 Identities=21% Similarity=0.298 Sum_probs=148.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+++ .||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHH
Confidence 45899999999999999999999999999999999999987 99999998 4899999988777 5999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
||+. +... . + .......+..+ .+..++.+ ....++.++ +.+..|
T Consensus 117 enl~-~~~~----~--~--~~~~~~~~~~~------------------------l~~~l~~~--~~~~~~~~~-~~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY----D--E--YRYRSVIKACQ------------------------LEEDISKF--AEKDNIVLG-EGGITL 160 (290)
T ss_dssp HHHH-TTCC----C--H--HHHHHHHHHTT------------------------CHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc----c--h--HHHHHHHHHhC------------------------hHHHHHhc--cccccchhc-CccCcC
Confidence 9998 4211 0 0 00000000000 01112222 223344454 346789
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHH-HHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSL-RQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
||||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++. .+++|++++|+...+ ..||+|++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~---~~~tviivtHd~~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT---TTSEEEEECCCHHHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh---CCCEEEEEecCHHHH-HcCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999864 3432 245666688887766 46999999999999
Q ss_pred EEEcChhhHH
Q 046656 376 VYQGPCELVL 385 (1326)
Q Consensus 376 v~~G~~~~~~ 385 (1326)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=371.96 Aligned_cols=212 Identities=27% Similarity=0.388 Sum_probs=174.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++|+||+++|+.. ++.++|+|||++|+|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 387 ~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~~i 454 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQDI 454 (1284)
T ss_dssp CEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEH
Confidence 68999999988531 12469999999999999999999999999999999999887 4699999999986
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-------LRQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++. ||+||+.|+.. +.+. +.++++++..++.+ -.|+.+|..+
T Consensus 455 ~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 455 RTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp GGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred HhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 53 3456779999999988865 99999998631 2222 23555566555543 2355566544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.+||||||||++|||||+++|+||+||||||+||++++..+++.++++. +|+|+|+++|+++ ....+|+|++|++
T Consensus 525 -~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~~- 599 (1284)
T 3g5u_A 525 -AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFDG- 599 (1284)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECSS-
T ss_pred -CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEEC-
Confidence 4799999999999999999999999999999999999999999998865 5999999999976 3456999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|++++.|+.
T Consensus 600 G~i~~~g~~ 608 (1284)
T 3g5u_A 600 GVIVEQGNH 608 (1284)
T ss_dssp SCCCCEECH
T ss_pred CEEEEECCH
Confidence 799999986
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-30 Score=316.97 Aligned_cols=191 Identities=25% Similarity=0.267 Sum_probs=159.9
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999987 899875 2369999999777788999998
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
+...... ... ....++.+++.+||.+..+. .+..|||
T Consensus 438 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDR-----NVEDLSG 474 (607)
T ss_dssp HHHHHHH-----------HHH---------------------------CHHHHHHTHHHHTCTTTTTS-----BGGGCCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCCchHhcC-----ChhhCCH
Confidence 8653100 000 01234667899999876664 4557999
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC--CeEE
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GQIV 376 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 376 (1326)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999986533 45666689999999999999999986 8889
Q ss_pred EEcChhhHHH
Q 046656 377 YQGPCELVLD 386 (1326)
Q Consensus 377 ~~G~~~~~~~ 386 (1326)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999998864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=311.77 Aligned_cols=191 Identities=24% Similarity=0.257 Sum_probs=158.2
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 567777888999999999999999999999999999987 899875 2369999999777788999888
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
+....... + . ....++.+++.+||.+..+. .+..|||
T Consensus 368 ~~~~~~~~-----~------~---------------------------~~~~~~~~l~~~~l~~~~~~-----~~~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L------N---------------------------SNFYKTELLKPLGIIDLYDR-----EVNELSG 404 (538)
T ss_dssp HHHHHHHH-----H------T---------------------------CHHHHHHTTTTTTCGGGTTS-----BGGGCCH
T ss_pred HHhhhccC-----C------C---------------------------HHHHHHHHHHHcCChhhhcC-----ChhhCCH
Confidence 76421100 0 0 01124567888899766654 4557999
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC--CeEE
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GQIV 376 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 376 (1326)
||||||+||++|+.+|++|+|||||+|||..++..+.+.|++++... +.+|++++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999986433 45566689999999999999999986 8899
Q ss_pred EEcChhhHHH
Q 046656 377 YQGPCELVLD 386 (1326)
Q Consensus 377 ~~G~~~~~~~ 386 (1326)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-29 Score=308.13 Aligned_cols=192 Identities=20% Similarity=0.215 Sum_probs=157.9
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
.|+++|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466677889999999999999999999999999999998 99998765 358999998766678999999
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
+.+..... . . + ....++++++.+||.+..+. .+..|||
T Consensus 351 l~~~~~~~-~-~------------------~-----------------~~~~~~~~l~~~~l~~~~~~-----~~~~LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-S------------------T-----------------SSWFFEEVTKRLNLHRLLES-----NVNDLSG 388 (538)
T ss_dssp HHHHCSST-T-C------------------T-----------------TSHHHHHTTTTTTGGGCTTS-----BGGGCCH
T ss_pred HHHhhhhc-c-c------------------h-----------------hHHHHHHHHHHcCCHHHhcC-----ChhhCCH
Confidence 98732100 0 0 0 00124566788888876664 4557999
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC--CeEE
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD--GQIV 376 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 376 (1326)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998764 356677789999999999999999986 6677
Q ss_pred EEcChhhHH
Q 046656 377 YQGPCELVL 385 (1326)
Q Consensus 377 ~~G~~~~~~ 385 (1326)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777776654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=317.18 Aligned_cols=193 Identities=20% Similarity=0.267 Sum_probs=157.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+...|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 466667777663 3579999999999999999999999999999999995 222 44432
Q ss_pred CcccccceEEEeecCC-CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 046656 889 KQETFTRISGYCEQND-IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLVGLPGESGLSTEQ 966 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~-~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~vg~~~~~~LSgGq 966 (1326)
.. ...++|++|+. ..++.+||.|++.+ .. ... +++++++++.+|+. +..++.++ .|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHH
Confidence 21 12368999874 66788999999976 11 111 34588999999994 66777764 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE-EEc
Q 046656 967 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1045 (1326)
Q Consensus 967 rqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~-~~G 1045 (1326)
|||++|||+|+.+|+||||||||+|||+.++..+.+.|++ .|+|||++|||+. .+...+|++++|++ |+++ |.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999988 5899999999976 57778999999986 6765 788
Q ss_pred CC
Q 046656 1046 PL 1047 (1326)
Q Consensus 1046 ~~ 1047 (1326)
+.
T Consensus 629 ~~ 630 (986)
T 2iw3_A 629 NF 630 (986)
T ss_dssp CH
T ss_pred CH
Confidence 75
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-29 Score=307.40 Aligned_cols=193 Identities=23% Similarity=0.222 Sum_probs=159.0
Q ss_pred ceeecceeEEEeCc-----eEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCC
Q 046656 137 LTILKDVSGIIKPG-----RMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIG 211 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G-----~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 211 (1326)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 779999999999999999999999987 7752 1 2346899999866666
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
..||+|++....+ +. .. ....++.+++.+||.+..+.
T Consensus 427 ~~tv~e~~~~~~~--~~---~~---------------------------------~~~~~~~~l~~l~l~~~~~~----- 463 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQ---FL---------------------------------NPQFQTDVVKPLRIDDIIDQ----- 463 (608)
T ss_dssp CSBHHHHHHHHCS--ST---TT---------------------------------SHHHHHHTHHHHTSTTTSSS-----
T ss_pred CccHHHHHHHHhh--cc---cc---------------------------------cHHHHHHHHHHcCChhhhcC-----
Confidence 7899998754221 00 00 00123567889999877664
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.... +.+|++++|+.+++..+||+|++|+
T Consensus 464 ~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 464 EVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp BSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 455799999999999999999999999999999999999999999999986543 4566678999999999999999998
Q ss_pred C--CeEEEEcChhhHHH
Q 046656 372 D--GQIVYQGPCELVLD 386 (1326)
Q Consensus 372 ~--G~iv~~G~~~~~~~ 386 (1326)
+ |+++..|++++++.
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999999875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-30 Score=319.51 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=114.8
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW 921 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~ 921 (1326)
++.+++|++++|+|+||||||||++.++|...+ .|+ +.+.|++|+.. ..+.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 448999999999999999999999999986432 121 12455566531 12222221
Q ss_pred hhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----H
Q 046656 922 LRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 996 (1326)
Q Consensus 922 lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~-----~ 996 (1326)
+. ..+ +++ +...++..+.+... ..||+||+||+.+|+++..+|++|++| ||+|||.. .
T Consensus 330 -~~--g~~-------~~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SW--GMD-------FEE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TT--SCC-------HHH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -Hc--CCC-------HHH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 11 122 122 22455655555443 359999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCc---------HHHHHHhceeeEEecC
Q 046656 997 AAIVMRTVKNTVETGRTVVCTIHQPS---------IDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 997 ~~~i~~~l~~~~~~g~tvi~~~H~~~---------~~~~~~~D~v~~l~~g 1038 (1326)
+..+.++++.+++.|.|||+++|+.. ..+...+|++++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 99999999999888999999999971 2455678999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-29 Score=317.25 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=134.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHH---------------------hhhcCCCCCC--e---eEEEEEEcCccC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--Y---ISGNITISGYPK 888 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~L~g~~~~~--~---~~G~i~i~g~~~ 888 (1326)
+.+|+||||+|++||++||+||||||||||+ +++.|...++ . ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999997 6666654322 1 145677777654
Q ss_pred CcccccceEEEeecCCCC-------------------CCCCCHHHHHHHHHHhhccCCCCHHHHHH------HHHHHHHH
Q 046656 889 KQETFTRISGYCEQNDIH-------------------SPLVTVYESLLYSAWLRLRTEVDSETRKM------FIEEIMEL 943 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~-------------------~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~------~v~~~l~~ 943 (1326)
... .++.+|+++|...+ ++.+||+||+.+...+..... ....... ...++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 12345555554322 356799999987433221110 0000000 11245888
Q ss_pred cCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 046656 944 VELKPL-RQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQ 1020 (1326)
Q Consensus 944 l~l~~~-~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1020 (1326)
+||.+. .++.++ .|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|+++.++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 998765 566654 599999999999999999998 999999999999999999999999998889999999999
Q ss_pred CcHHHHHHhceeeEEe-----cCcEEEEEcCC
Q 046656 1021 PSIDIFEAFDELFLMK-----RGGQEIYVGPL 1047 (1326)
Q Consensus 1021 ~~~~~~~~~D~v~~l~-----~gg~~~~~G~~ 1047 (1326)
++ ....+|++++|. ++|++++.|+.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCH
Confidence 75 456799999993 36899999986
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-24 Score=274.26 Aligned_cols=109 Identities=24% Similarity=0.272 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCC---ccceEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046656 270 LTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA---LALFMDEISNGLDSSTTFHIVNSLRQNIHILN 346 (1326)
Q Consensus 270 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 346 (1326)
.+.++|+.+||.... . ++.+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 784 ~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~- 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R- 857 (916)
T ss_dssp HHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c-
Confidence 356779999996421 2 2456789999999999999999865 79999999999999999999999999865 3
Q ss_pred CEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhHH
Q 046656 347 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELVL 385 (1326)
Q Consensus 347 ~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 385 (1326)
+.+||+++|+.+.+ ..||+|++| ++|+|+++|+++++.
T Consensus 858 G~TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 858 GNTVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCEEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 55666789998766 459999999 899999999999985
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=275.40 Aligned_cols=107 Identities=24% Similarity=0.279 Sum_probs=91.8
Q ss_pred HHHHHHHcCCcc-cccccccCccccCCChhhhHHHHHHHHhhcCC---ccceEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 046656 271 TDYYLKVLGLDV-CADTLVGDEMVRGISGGQKKRLTTGEMMVGPA---LALFMDEISNGLDSSTTFHIVNSLRQNIHILN 346 (1326)
Q Consensus 271 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~---~illLDEptsgLD~~t~~~i~~~l~~~~~~~~ 346 (1326)
...+|+.+||.. ..+ +.+..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 825 ~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~--~ 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD--N 897 (972)
T ss_dssp HHHHHHHTTCSSSBTT-----CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHcCCCccccc-----CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--C
Confidence 356789999975 344 445679999999999999999764 99999999999999999999999999865 3
Q ss_pred CEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhHH
Q 046656 347 GTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELVL 385 (1326)
Q Consensus 347 ~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 385 (1326)
+.+|++++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 56677789998875 689999999 789999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-24 Score=270.93 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCccc-ccccccCccccCCChhhhHHHHHHHHhhcC---CccceEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 046656 270 LTDYYLKVLGLDVC-ADTLVGDEMVRGISGGQKKRLTTGEMMVGP---ALALFMDEISNGLDSSTTFHIVNSLRQNIHIL 345 (1326)
Q Consensus 270 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~---~~illLDEptsgLD~~t~~~i~~~l~~~~~~~ 345 (1326)
.++.+|+.+||... .+ +.+..|||||||||+||++|+.+ |++|||||||+|||+.+...+.+.|++++.
T Consensus 709 ~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-- 781 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLG-----QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-- 781 (842)
T ss_dssp HHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCccccc-----CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--
Confidence 45778999999763 23 45668999999999999999996 799999999999999999999999999865
Q ss_pred CCEEEEEEecChhhHHhhCCeEEEe------cCCeEEEEcChhhHH
Q 046656 346 NGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPCELVL 385 (1326)
Q Consensus 346 ~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 385 (1326)
.+.+|++++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 782 ~G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 782 AGNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 356677789999888 889999999 799999999999874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-24 Score=260.16 Aligned_cols=204 Identities=17% Similarity=0.159 Sum_probs=141.4
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCC------------------------------------CeeEE
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYISG 879 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~------------------------------------~~~~G 879 (1326)
.+++++++.+++| +++|+|+|||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 9999999999999999999653321 01268
Q ss_pred EEEEcCccCCccc---c-cceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-------------------CCCC-------
Q 046656 880 NITISGYPKKQET---F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-------------------TEVD------- 929 (1326)
Q Consensus 880 ~i~i~g~~~~~~~---~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-------------------~~~~------- 929 (1326)
++.+||.+.+... . ...+++++|++.+... +..+...|.-..... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999999876422 2 2347999998766543 454444332111000 0000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccCCC-
Q 046656 930 -------------------------------SETRKMFIEEIMELVELKPLR----------------QS---LVGLPG- 958 (1326)
Q Consensus 930 -------------------------------~~~~~~~v~~~l~~l~l~~~~----------------~~---~vg~~~- 958 (1326)
.....+.+++.++.+++.+.. +. .....+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000113345556666654310 00 111000
Q ss_pred -----CCC-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhc
Q 046656 959 -----ESG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFD 1030 (1326)
Q Consensus 959 -----~~~-LSgGqrqrl~ia~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D 1030 (1326)
... ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|+|||+|||++ ++...+|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 011 7999999999999999999 9999999999999999999999999997 589999999997 4567899
Q ss_pred eeeEE----ecCcEEEEEc
Q 046656 1031 ELFLM----KRGGQEIYVG 1045 (1326)
Q Consensus 1031 ~v~~l----~~gg~~~~~G 1045 (1326)
++++| .+ |+++...
T Consensus 364 ~i~~l~k~~~~-G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSHV 381 (415)
T ss_dssp EEEEEEEEEET-TEEEEEE
T ss_pred eEEEEEEeccC-CceEEEE
Confidence 99999 75 5666543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-26 Score=277.73 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=142.5
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE-E-EEEcCccCCcccccceEEEeecCCC---CCCCCCHH
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-N-ITISGYPKKQETFTRISGYCEQNDI---HSPLVTVY 913 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gyv~Q~~~---~~~~~Tv~ 913 (1326)
.++|+++++|++++|+||||||||||+++|+|... +.+| + |.+||. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 47999999999999999999999999999999876 4689 8 999982 2456899999874 44567999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCcE----EEEeC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVE--LVANPSI----IFMDE 987 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~a--L~~~p~i----llLDE 987 (1326)
||+ |+...... ... .+.+.++++.+|+.+..+ . ..|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~--~~~---~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSG--ATL---LHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSS--CCS---SCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccC--cch---HHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 65332111 111 123456777788877655 2 3699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc--H---HHHHHhce-----eeEEecCcEEEEEcCC
Q 046656 988 -PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 988 -PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~D~-----v~~l~~gg~~~~~G~~ 1047 (1326)
||++||+. ...+.+.+++ .|.|+|+++|+.+ . ++..++|+ +++|++.|+++ .|+.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~ 333 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDD 333 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCH
Confidence 99999999 5555555554 3789999999976 3 34567899 99998345667 7775
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-26 Score=273.70 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=141.4
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceee-E-EEECCccCCCCCccceEEEEccCCC---CCCCCCH
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG-R-VTYNGHDMNEFVPQRTAAYISQHDV---HIGEMTV 215 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 215 (1326)
.++|+.+++|++++|+||||||||||+|+|+|...|+ +| + |.++|. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4799999999999999999999999999999999876 89 8 999982 3567899999873 4556899
Q ss_pred HHHHHhhhhh-ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 216 RETLAFSARC-QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 216 ~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
+||+ |+... .+. ...+ .++.+++.+||+...+ ..
T Consensus 200 ~eni-~~~~~~~~~-~~~~------------------------------------~~~~ll~~~gl~~~~~-------~~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGA-TLLH------------------------------------NKQPMVKNFGLERINE-------NK 234 (460)
T ss_dssp TCTT-CSCBCBSSC-CSSC------------------------------------CBCCEECCCCSSSGGG-------CH
T ss_pred hhhh-cccccccCc-chHH------------------------------------HHHHHHHHhCCCcccc-------hh
Confidence 9999 76542 110 0000 0122355677766543 45
Q ss_pred CCChhhhHHHHHHHH--hhcCCcc----ceEec-CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChh------hHH
Q 046656 295 GISGGQKKRLTTGEM--MVGPALA----LFMDE-ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAP------ETY 361 (1326)
Q Consensus 295 ~LSGGqkqRvsia~a--l~~~~~i----llLDE-ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~------~~~ 361 (1326)
.|||||||||++|++ |+.+|++ +|||| ||++||+. ...+.+.+++ .+.++|+ ++|+.. ++.
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tvii-Vth~~~~~l~~~~~~ 308 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIML-VLCSETDPLWEKVKK 308 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEE-EECCSSCTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEE-EEccCchhhhHHHHH
Confidence 799999999999999 9999999 99999 99999999 4444444443 3455555 445444 666
Q ss_pred hhCCe-----EEEec-CCeEEEEcChhhHH
Q 046656 362 DLFDD-----IILLS-DGQIVYQGPCELVL 385 (1326)
Q Consensus 362 ~~~D~-----vilL~-~G~iv~~G~~~~~~ 385 (1326)
+++|+ |++|+ +|+++ .|+++++.
T Consensus 309 ~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 309 TFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 89999 99999 99999 99987663
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-23 Score=247.44 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=149.0
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC-----------------------------------Cce
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS-----------------------------------LKV 180 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~ 180 (1326)
+..+|+++++.+.+| +++|+|||||||||||++|.+.+.+. ..-
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 345799999999999 99999999999999999997766421 011
Q ss_pred eeEEEECCccCCCCCc----cceEEEEccCCCCCCCCCHHHHHHhhhhhccC-----CccchhhhHhHHHHHHhCCCCch
Q 046656 181 SGRVTYNGHDMNEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQGV-----GSRYDMLTELARREKEAGIKPDL 251 (1326)
Q Consensus 181 ~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~~~~~~i~pd~ 251 (1326)
+|++.+||.+++.... ...+++++|++.++. .+..+...|--..... ...|....+..+..... .+...
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 6889999988753221 134899999876543 3565555543221100 00000000000000000 00000
Q ss_pred -----------hHHH-----------HHHHhhhhhHHHHHHHHHHHHHcCCccccc----------c---------cccC
Q 046656 252 -----------FIDV-----------FMKAAATEGQEANVLTDYYLKVLGLDVCAD----------T---------LVGD 290 (1326)
Q Consensus 252 -----------~~~~-----------~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d----------t---------~vg~ 290 (1326)
..+. ..+............++..++.++++...- + .+..
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 0000 000011112223345566677777754110 0 1110
Q ss_pred ------ccccC-CChhhhHHHHHHHHhhcCC--ccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHH
Q 046656 291 ------EMVRG-ISGGQKKRLTTGEMMVGPA--LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETY 361 (1326)
Q Consensus 291 ------~~~~~-LSGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 361 (1326)
..++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++. . +.+|++++|.. ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~-~~~vi~itH~~-~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--D-TRQVLVVTHLA-QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--T-TSEEEEECSCH-HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--C-CCEEEEEeCcH-HHH
Confidence 12222 6999999999999999999 9999999999999999999999999985 2 44555578876 667
Q ss_pred hhCCeEEEe----cCCeEEEEc
Q 046656 362 DLFDDIILL----SDGQIVYQG 379 (1326)
Q Consensus 362 ~~~D~vilL----~~G~iv~~G 379 (1326)
+.||++++| ++|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-25 Score=240.16 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=99.3
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
++.+|+|| ++||+++|+||||||||||+++|+|. + +.+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 35689996 89999999999999999999999998 5 34566632111111123456789999975 4
Q ss_pred HHH-HHHHHh--hccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 914 ESL-LYSAWL--RLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 914 E~l-~f~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
||+ .+.... ....... .+.++++++. + + |||||++|||||+.+|++|||||||+
T Consensus 77 enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 555 331100 0000011 1234555543 2 2 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 991 GLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
| ++..+++.|+++ ++|+||| +|||++
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9 888899999988 6689999 999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-22 Score=232.20 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 960 SGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
..||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+++|+++ ..+.+|+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~ 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKL 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEE
Confidence 469999999999999999 799999999999999999999999999999888999999999975 467899999
Q ss_pred EEecCcEEEE
Q 046656 1034 LMKRGGQEIY 1043 (1326)
Q Consensus 1034 ~l~~gg~~~~ 1043 (1326)
+|++ |+++.
T Consensus 356 ~l~~-G~i~~ 364 (365)
T 3qf7_A 356 RITG-GVVVN 364 (365)
T ss_dssp EEET-TEEC-
T ss_pred EEEC-CEEEe
Confidence 9986 67653
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=226.67 Aligned_cols=86 Identities=23% Similarity=0.223 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhcee--e
Q 046656 960 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDEL--F 1033 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v--~ 1033 (1326)
..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||++||++. +.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 469999999999999997 6889999999999999999999999999984 5899999999964 66789986 8
Q ss_pred EEecCcEEEEEcCCC
Q 046656 1034 LMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 1034 ~l~~gg~~~~~G~~~ 1048 (1326)
+|.+|...+.....+
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 888887877777653
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-22 Score=213.96 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=101.0
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCC-CCCHHHHHHH
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSP-LVTVYESLLY 918 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~-~~Tv~E~l~f 918 (1326)
||||++++||+++|+||||||||||++++.+... .+++ . ...|+++|+..... .-++++.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d---~~~g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----D---FCRGLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----H---HHHHHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----H---HHHHHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999764221 1111 0 12366777642110 0011121111
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH---
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 995 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~--- 995 (1326)
.. +.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 65 -----------------~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 65 -----------------IV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 11 122233444444432 236999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 996 -------------AAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 996 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
....+++.|+++.++|.|+|+++|+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558889999888777999999999864
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=218.84 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=73.6
Q ss_pred ccccCCChhhhHHHHHHHHhh------cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 291 EMVRGISGGQKKRLTTGEMMV------GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
..+..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.. . +.+|++++|+... .+.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~-g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-L-NKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-S-SSEEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecchHH-HHhC
Confidence 466789999999999999999 79999999999999999999999999998754 3 5566668888866 7889
Q ss_pred CeEEEecCCeEEE
Q 046656 365 DDIILLSDGQIVY 377 (1326)
Q Consensus 365 D~vilL~~G~iv~ 377 (1326)
|+|++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-23 Score=223.06 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=97.7
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIG 211 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 211 (1326)
+.++++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH----
Confidence 344556789996 89999999999999999999999999 876 677732101111112346799999975
Q ss_pred CCCHHHHH-HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 212 EMTVRETL-AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 212 ~lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+||+ .+..... ..+. ... + ...++.+++. |
T Consensus 76 ----~enl~~~~~~~~---------~~~~------~~~-~-----------------~~~~~~~l~~-g----------- 106 (208)
T 3b85_A 76 ----NEKIDPYLRPLH---------DALR------DMV-E-----------------PEVIPKLMEA-G----------- 106 (208)
T ss_dssp --------CTTTHHHH---------HHHT------TTS-C-----------------TTHHHHHHHT-T-----------
T ss_pred ----HHHHHHHHHHHH---------HHHH------Hhc-c-----------------HHHHHHHHHh-C-----------
Confidence 5666 4421100 0000 000 0 0012333332 2
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET 360 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 360 (1326)
+ ||||||+|||||+.+|++|||||||+| ++..+.+.|+++ . .+++|+ ++|+..++
T Consensus 107 -----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 -----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp -----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred -----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 788888888876 2 356677 78887544
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-23 Score=247.43 Aligned_cols=171 Identities=14% Similarity=0.145 Sum_probs=136.1
Q ss_pred eEeeecceeEEeCCe--------------------EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccccc
Q 046656 835 LVLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFT 894 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~ 894 (1326)
+.+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 358999999999999 999999999999999999999876 35799999886542
Q ss_pred ceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHH
Q 046656 895 RISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE--QRKRLTI 972 (1326)
Q Consensus 895 ~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqrl~i 972 (1326)
+ .+|++|++ .++.+|+.|++.++. . +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 567889988875531 0 12367889999987653322 28999 9999999
Q ss_pred HHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hc----CCEEEEEecCCcH-HHHHHhcee
Q 046656 973 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVKNTV-----ET----GRTVVCTIHQPSI-DIFEAFDEL 1032 (1326)
Q Consensus 973 a~aL~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~~~-----~~----g~tvi~~~H~~~~-~~~~~~D~v 1032 (1326)
|++|+. +|++++|||||+|||+.++..+++.|+++. +. ..+|++++|+.+. ++.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999874 22 2678899998762 266677777
Q ss_pred e
Q 046656 1033 F 1033 (1326)
Q Consensus 1033 ~ 1033 (1326)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-23 Score=227.40 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=119.8
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
..+++| .+|++||+++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|+...++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcC
Confidence 457888 6899999999999999999999999999764 233333333332211 22456899999987777778777
Q ss_pred HHHHHHHhhc---cCCCCHHHHHHHHHHH------HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 046656 915 SLLYSAWLRL---RTEVDSETRKMFIEEI------MELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985 (1326)
Q Consensus 915 ~l~f~~~lr~---~~~~~~~~~~~~v~~~------l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illL 985 (1326)
++.+...... ....+.++.++.+++. ++.+++.+.++...+ .|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHHH
Confidence 7642211111 0112333444445554 455555555554432 466 88999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 986 DEPTSGL----DARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 986 DEPtsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||+|+ |+..+..+++.++++.+ .|.|+|+++|+++ ++...+|++++|.+.|+
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 9999998 78899999999999874 5899999999986 68889999999976553
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-23 Score=231.91 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=116.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 56899999999999999999999999999999999997 5877 356788766554 5888
Q ss_pred H-HHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 217 E-TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 217 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
| |+.|.... . + .....++.+ |++..| +..
T Consensus 171 ~~ni~~~~~~-------~---~--------------------------------~~~~~i~~~-L~~gld-------g~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------T---H--------------------------------ACWRYFDTY-LRNALD-------GYP 200 (305)
T ss_dssp TCSCEEEEEE-------C---H--------------------------------HHHHHHHHT-TTGGGG-------TCC
T ss_pred HHhhccCccc-------c---H--------------------------------HHHHHHHHH-hHccCC-------ccC
Confidence 7 77663110 0 0 011123332 333333 347
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|||||||| |||++.+|+||| ||+||+.+...+.. + +|.. +....+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~~-~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSRV-QTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTTE-EEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCCH-HHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999887752 1 3332 345689999 9999999
Q ss_pred EEEcChhhHHHHHHhc
Q 046656 376 VYQGPCELVLDFFESM 391 (1326)
Q Consensus 376 v~~G~~~~~~~~F~~l 391 (1326)
++.|+++++..+|.++
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999986666543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-22 Score=235.08 Aligned_cols=172 Identities=14% Similarity=0.138 Sum_probs=133.1
Q ss_pred ceeecceeEEEeCce--------------------EEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc
Q 046656 137 LTILKDVSGIIKPGR--------------------MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP 196 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~--------------------~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 196 (1326)
+.+|+|||+.+++|+ +++|+||||||||||+|+|+|..+|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 568999999999999 99999999999999999999999987 899999987643
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHH
Q 046656 197 QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLK 276 (1326)
Q Consensus 197 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (1326)
+ .+|++|++ .++++|++|++.++.. + ..++++++
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~------~-------------------------------------~~~~~~L~ 142 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGST------N-------------------------------------FPPDTYLE 142 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGGS------S-------------------------------------CCHHHHHH
T ss_pred e--eEEecccc-ccCCeeehHhhcccch------H-------------------------------------HHHHHHHH
Confidence 1 27899985 5778899988755310 0 01345677
Q ss_pred HcCCcccccccccCccccCCChh--hhHHHHHHHHhhc----------CCccceEecCCCCCCHHHHHHHHHHHHHHHH-
Q 046656 277 VLGLDVCADTLVGDEMVRGISGG--QKKRLTTGEMMVG----------PALALFMDEISNGLDSSTTFHIVNSLRQNIH- 343 (1326)
Q Consensus 277 ~lgL~~~~dt~vg~~~~~~LSGG--qkqRvsia~al~~----------~~~illLDEptsgLD~~t~~~i~~~l~~~~~- 343 (1326)
.++|.+... ... |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~~------~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF------FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE------EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC------eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 888775422 122 9999 9999999999999 9999999999999999999999999998752
Q ss_pred ---hc---CCEEEEEEecChhh--HHhhCCeEE
Q 046656 344 ---IL---NGTAVISLLQPAPE--TYDLFDDII 368 (1326)
Q Consensus 344 ---~~---~~t~ii~i~q~~~~--~~~~~D~vi 368 (1326)
.. ..++++..+|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23555555665554 777777764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-20 Score=199.67 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=100.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~ 926 (1326)
.++|+||||||||||+++|+|... |.++|.+... ...++.+||++|+. ++.+++ + +.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~--- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF--- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc---
Confidence 589999999999999999999753 2233332211 12345689999975 222322 1 0000
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHH
Q 046656 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 999 (1326)
Q Consensus 927 ~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~a-----L~~~p~illLDE--PtsgLD~~~~~~ 999 (1326)
.. -.+..+..+ ..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 64 -~~----------------~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 64 -FT----------------SKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -CC----------------CSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -CC----------------ccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 002233333 3599999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEec---CCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 1000 VMRTVKNTVETGRTVVCTIH---QPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9888875 4777888886 543 45566777 3567665443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-20 Score=211.64 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=70.4
Q ss_pred ccccCCChhhhHHHHHHHHhh----cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 291 EMVRGISGGQKKRLTTGEMMV----GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
..+..|||||||||+||++|+ .+|++++|||||++||+..+..+.+.++++. . +++++.++|. .++.+.+|+
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~-~~~vi~~tH~-~~~~~~~d~ 290 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--K-HTQFIVITHN-KIVMEAADL 290 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--T-TSEEEEECCC-TTGGGGCSE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--C-CCeEEEEECC-HHHHhhCce
Confidence 345689999999999999997 6899999999999999999999999999873 2 4455667777 467889998
Q ss_pred E--EEecCCeE-EEEcChhh
Q 046656 367 I--ILLSDGQI-VYQGPCEL 383 (1326)
Q Consensus 367 v--ilL~~G~i-v~~G~~~~ 383 (1326)
+ ++|.+|+. +.....++
T Consensus 291 ~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEEESSSCEEEEECCC--
T ss_pred EEEEEEeCCEEEEEEEEcch
Confidence 7 78887754 44444444
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-20 Score=194.66 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=55.9
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSS----------------TTFHIVNSLRQNIHILNGTAVISLLQPAP 358 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~----------------t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 358 (1326)
..||||||||+||+++..+|++++|||||++||+. ...++.+.++++... +.+++.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~--g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE--GFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH--TCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc--CCcEEEEeCCHH
Confidence 46999999999999999999999999999999999 558888888877553 455666888887
Q ss_pred hHHh
Q 046656 359 ETYD 362 (1326)
Q Consensus 359 ~~~~ 362 (1326)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-20 Score=197.26 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=101.6
Q ss_pred EEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCCcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 231 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 231 (1326)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 23344321 1111001245789999974 222222 10 00
Q ss_pred chhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHH--
Q 046656 232 YDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEM-- 309 (1326)
Q Consensus 232 ~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~a-- 309 (1326)
+.. .+..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~--~~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFT--SKKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCC--CSSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCC--ccccc-cccccCcCHHHHHHHHHHhhcc
Confidence 000 00111 23456799999999999996
Q ss_pred ---hhcCCccceEec--CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEe--cChhhHHhhCCeEEEecCCeEEE
Q 046656 310 ---MVGPALALFMDE--ISNGLDSSTTFHIVNSLRQNIHILNGTAVISLL--QPAPETYDLFDDIILLSDGQIVY 377 (1326)
Q Consensus 310 ---l~~~~~illLDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~--q~~~~~~~~~D~vilL~~G~iv~ 377 (1326)
++.+|++++||| ||++||+.....+.+.+++ .+.++++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999888865 2455677664 688888888887 5667664
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-22 Score=229.92 Aligned_cols=167 Identities=13% Similarity=0.166 Sum_probs=122.4
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++||++.++ +.+|+|+|++|++|++++|+||||||||||+++|+|.. +|+|.
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------- 155 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE-------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE-------
Confidence 67788887663 24899999999999999999999999999999999976 46663
Q ss_pred cccccceEEEeecCCCCCCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QETFTRISGYCEQNDIHSPLVTVYE-SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~~~~~~~gyv~Q~~~~~~~~Tv~E-~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
+|++|++.++. .|++| |+.|.. +.+. .+++.++.+ |.+..+ | ..|||||||
T Consensus 156 --------~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQ 207 (305)
T 2v9p_A 156 --------SFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKH 207 (305)
T ss_dssp --------CGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSS
T ss_pred --------EEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHH
Confidence 45677766554 46776 765531 1111 245556653 333333 2 469999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
| ||||+++|+||| ||+||+.++..|.. .+|+++ ..+.+|++ +|++ |++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~- 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD- 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH-
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH-
Confidence 9 999999999999 99999999888752 189876 35779999 9985 799998875
Q ss_pred CChhhHHHHHh
Q 046656 1049 SNSSDLISYLQ 1059 (1326)
Q Consensus 1049 ~~~~~~~~~f~ 1059 (1326)
+++..+|.
T Consensus 262 ---~el~~~y~ 269 (305)
T 2v9p_A 262 ---ADWKSFFV 269 (305)
T ss_dssp ---HHHHHHHH
T ss_pred ---HHHHHHHH
Confidence 44544444
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-20 Score=211.86 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=119.5
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CC
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TF--TRISGYCEQNDI-HS 907 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~ 907 (1326)
++++|+.+++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 467899999999999999999999999999999765 3479999999876431 12 235899999988 88
Q ss_pred CCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEE
Q 046656 908 PLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFM 985 (1326)
Q Consensus 908 ~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illL 985 (1326)
+..|++|++.+... + ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~---~~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T---TCS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c---CCc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 1 111 134566777766666553 488 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecC
Q 046656 986 DEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQ 1020 (1326)
Q Consensus 986 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1020 (1326)
| ||+|||+..+. +++. +.|.|+|++||.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKL 256 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECC
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCC
Confidence 9 99999987552 3444 348999999994
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-20 Score=211.75 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=96.9
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVD 929 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~ 929 (1326)
.++|+||||||||||+|+|+|... +.+|+|.++|.+......++.+||++|++.+.+.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999876 4589999999887555556789999999999999999999988653221 111
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046656 930 SETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009 (1326)
Q Consensus 930 ~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1009 (1326)
. +.+.+.++ .+..+...+ .||||||||++|||+++. ++||||||.|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12333332 334444443 599999999999999875 999999999999886 345555555
Q ss_pred cCCEEEEEecCC
Q 046656 1010 TGRTVVCTIHQP 1021 (1326)
Q Consensus 1010 ~g~tvi~~~H~~ 1021 (1326)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999964
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-19 Score=207.82 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=104.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.-.. ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999998764 489999998642110 1122222221
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+ |||+||++||++|..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 356677776543458999999987 56789999999876
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=195.37 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=75.3
Q ss_pred Ccccc-CCChhhhHHHHHHHHhh---------cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 046656 290 DEMVR-GISGGQKKRLTTGEMMV---------GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE 359 (1326)
Q Consensus 290 ~~~~~-~LSGGqkqRvsia~al~---------~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 359 (1326)
+..++ .+|||||||++||++|+ ++|+||||||||++||+..+..+++.++++ . .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc
Confidence 44566 69999999999999999 899999999999999999999999999874 2 567777774 33
Q ss_pred HHhhCCeEEEecCCeEEEEcChhhH
Q 046656 360 TYDLFDDIILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 360 ~~~~~D~vilL~~G~iv~~G~~~~~ 384 (1326)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-19 Score=205.63 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=126.1
Q ss_pred ecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---------ccceEEEEccCCC-C
Q 046656 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---------PQRTAAYISQHDV-H 209 (1326)
Q Consensus 140 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~ 209 (1326)
++++|+.+++|++++|+||||||||||++.|+|.++|. +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999876 899999998865321 1235899999987 8
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+|++.++... + ++ ..+++.+|+.+..+.
T Consensus 167 ~~~~~v~e~l~~~~~~-~----~d--------------------------------------~~lldt~gl~~~~~~--- 200 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYS--- 200 (302)
T ss_dssp CHHHHHHHHHHHHHHT-T----CS--------------------------------------EEEECCCCCSSCCHH---
T ss_pred CHHHHHHHHHHHHHHc-C----Cc--------------------------------------chHHhcCCCCcchhH---
Confidence 8899999999875321 1 00 001334566554443
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCc--cceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hh
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPAL--ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP---------AP 358 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~ 358 (1326)
.+..|| |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.+ ++.++|. ..
T Consensus 201 --~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t-~iiiThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 201 --LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGIT-GLILTKLDGSARGGCVVS 267 (302)
T ss_dssp --HHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCC-EEEEECCSSCSCTHHHHH
T ss_pred --HHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCC-EEEEeCCCCCCccChhee
Confidence 344689 999999999999999 99999 99999997542 3333223444 4446662 22
Q ss_pred hHHhhCCeEEEecCCeE
Q 046656 359 ETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 359 ~~~~~~D~vilL~~G~i 375 (1326)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 33455678888888864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-21 Score=214.03 Aligned_cols=178 Identities=11% Similarity=-0.007 Sum_probs=112.1
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc----ccccceEEEeecCCCCCCCCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ----ETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
.-|+||||+|++|++++|+||||||||||+++|+|.. + |+|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 3699999999999999999999999999999999976 2 77888 665321 123456799999865544332
Q ss_pred H-HHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCcEEE
Q 046656 912 V-YESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTI-----AVELVANPSIIF 984 (1326)
Q Consensus 912 v-~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~i-----a~aL~~~p~ill 984 (1326)
. .+++.+ ..+..+ ...+ ++.++++++..++. ..+ ..||||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 111111 000100 0111 12366677654331 111 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------cCCEEEEEecCCcHHHHHHhceeeE
Q 046656 985 MDEPTSGLDARAAAIVMRTVKNTVE-------TGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 985 LDEPtsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
|||||+++|..+...|.+.+++..+ .+.+.|++.|++. +.+...|+++.
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii~ 206 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYLL 206 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHHH
Confidence 9999999999999999888877643 3456666677654 45555555543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-19 Score=202.28 Aligned_cols=147 Identities=13% Similarity=0.173 Sum_probs=88.5
Q ss_pred EEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCCcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSR 231 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 231 (1326)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++.....++.++|++|++.+++.+||.||+.|+....... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-H
Confidence 47899999999999999999999887 8999999988755444578999999999999999999999875432110 0
Q ss_pred chhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhh
Q 046656 232 YDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMV 311 (1326)
Q Consensus 232 ~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~ 311 (1326)
++. +..+ +. ....+ .....|||||||||++||+++
T Consensus 80 ~~~------------------i~~~------------------~~----~~~~~-----~~~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WEP------------------IEKY------------------IN----EQYEK-----FLKEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SHH------------------HHHH------------------HH----HHHHH-----HHHHHSCTTCCSSCCCCSCCE
T ss_pred HHH------------------HHHH------------------HH----HHHHh-----hhHHhcCcccchhhhhheeee
Confidence 000 0000 00 01111 122359999999999999987
Q ss_pred cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 046656 312 GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPA 357 (1326)
Q Consensus 312 ~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 357 (1326)
. +++||||+.|||+.. .+.++.+.. . .++|++ .+..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~V-i~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPV-IAKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEE-ETTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEE-Eecc
Confidence 5 999999999999976 334444432 2 455554 4443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-19 Score=207.07 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=120.2
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCC-CCC
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TF--TRISGYCEQNDI-HSP 908 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~-~~~ 908 (1326)
+.+|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788899999999999999999999999999765 3479999999876431 12 245899999988 888
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFMD 986 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illLD 986 (1326)
..|++|++.++.. + ..+ ..+++.+|+.+..+..++ +|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~---~~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E---GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T---TCS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C---CCH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987532 1 111 134566777766665553 488 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecC
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQ 1020 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1020 (1326)
||+|||+.++. +++.+ .|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999987653 34443 48999999994
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=190.59 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=68.4
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 960 SGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 960 ~~LSgGqrq------rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.+.|.|||++||++ ++.+.+|+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEEE
Confidence 469999999 67788888889999999999999999999999999999877789999999995 4678899999
Q ss_pred EEec
Q 046656 1034 LMKR 1037 (1326)
Q Consensus 1034 ~l~~ 1037 (1326)
+|..
T Consensus 325 ~l~~ 328 (339)
T 3qkt_A 325 RISL 328 (339)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9863
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-21 Score=209.01 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=104.7
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc----cceEEEEccCCCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP----QRTAAYISQHDVHIGEM 213 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 213 (1326)
.-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.....+ ++.++|++|++..++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4699999999999999999999999999999999987 4 77888 776543222 35688999986555433
Q ss_pred CH-HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 214 TV-RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 214 TV-~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
+. .+++.+. ... ...|.... ..++++++... ...+.
T Consensus 84 ~~~~~~l~~~-~~~--~~~~g~~~--------------------------------~~i~~~l~~~~-----~~il~--- 120 (218)
T 1z6g_A 84 LKNEDFLEYD-NYA--NNFYGTLK--------------------------------SEYDKAKEQNK-----ICLFE--- 120 (218)
T ss_dssp HHTTCEEEEE-EET--TEEEEEEH--------------------------------HHHHHHHHTTC-----EEEEE---
T ss_pred hhccchhhhh-hcc--cccCCCcH--------------------------------HHHHHHHhCCC-----cEEEE---
Confidence 21 1111110 000 00010000 01222333221 11111
Q ss_pred ccCCChhhhHHHHH-----HHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 293 VRGISGGQKKRLTT-----GEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 293 ~~~LSGGqkqRvsi-----a~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.+.... .+ +.| ...||.|
T Consensus 121 -~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~i 188 (218)
T 1z6g_A 121 -MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNLS 188 (218)
T ss_dssp -ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSEE
T ss_pred -ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCEE
Confidence 3699999999999 88999999999999999999999999999888775432 11 122 2456777
Q ss_pred EEecC
Q 046656 368 ILLSD 372 (1326)
Q Consensus 368 ilL~~ 372 (1326)
+++++
T Consensus 189 iv~~~ 193 (218)
T 1z6g_A 189 IINDD 193 (218)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 66654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-19 Score=214.59 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=136.0
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc---cCCc--------ccccceEEEeecC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY---PKKQ--------ETFTRISGYCEQN 903 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~gyv~Q~ 903 (1326)
..+|+++ +.|.+|++++|+||||||||||+++|+|...+ ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4599999 99999999999999999999999999998764 5899999997 3321 2245779999995
Q ss_pred -CCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 046656 904 -DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 982 (1326)
Q Consensus 904 -~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~i 982 (1326)
+...+.+|+.+++.+.+....... + ....+.|.. ..||+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~-------~---------~v~~~ld~l------~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRG-------Q---------HVLLIMDSL------TRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTT-------C---------EEEEEEECH------HHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC-------C---------CHHHHHHhH------HHHHHHH-HHHHHH---hCCCcc
Confidence 455677899999987654321100 0 011112222 3599999 999999 888988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---c-CC-----EEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 983 IFMDEPTSGLDARAAAIVMRTVKNTVE---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 983 llLDEPtsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|+|||+.+...+.+.++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|+.
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999865 3 64 9999999987 467899999985 799987763
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-19 Score=215.31 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=139.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCc---cCCCC--------CccceEEEEc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH---DMNEF--------VPQRTAAYIS 204 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~--------~~~~~~~yv~ 204 (1326)
...+|+++ +.+.+|++++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++||+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 46699999 999999999999999999999999999999987 899999998 45432 1246799999
Q ss_pred cC-CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccc
Q 046656 205 QH-DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVC 283 (1326)
Q Consensus 205 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 283 (1326)
|+ +..++.+||.+|+.+.++.... .. .+ ....
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~----~~-----------------------------v~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG----QH-----------------------------VLLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT----CE-----------------------------EEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC----CC-----------------------------HHHH
Confidence 95 5667788999999886543110 00 00 0000
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHh--cCCE-----EEEEEecC
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI--LNGT-----AVISLLQP 356 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~--~~~t-----~ii~i~q~ 356 (1326)
.| .+..+|||| |||+|| +.+|++ |+|||+.+...+.+.+.++.+. .++. +|++.+|+
T Consensus 253 ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 11 134599999 999999 788887 9999999999999999886442 2253 66767788
Q ss_pred hhhHHhhCCeEEEecCCeEEEEcChhhH
Q 046656 357 APETYDLFDDIILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 357 ~~~~~~~~D~vilL~~G~iv~~G~~~~~ 384 (1326)
.. ...+|++++|.+|+++..|+..++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 76 678999999999999999988765
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-20 Score=201.33 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=111.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
.++|+| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457788 68999999999999999999999999999852 23333333322211 1235689999997778888888
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHH------HHHcCCcccccccccC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYY------LKVLGLDVCADTLVGD 290 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 290 (1326)
|++.+.....+....|... +.+ ....+++. ++.+|+....+
T Consensus 83 ~~l~~~~~~~~n~~~~g~~----~~~------------------------~~~~~~~~~~~~~~l~~~gl~~~~~----- 129 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTL----AQP------------------------VRAAAATGVPVLIEVDLAGARAIKK----- 129 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEE----HHH------------------------HHHHHHHTCCEEEECCHHHHHHHHH-----
T ss_pred CCceeehhhcCchhhcCCc----HHH------------------------HHHHHHcCCeEEEEeCHHHHHHHHH-----
Confidence 7764322111000001000 000 00011111 22233332222
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCC----CHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGL----DSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgL----D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
..++.|| +|+.+|++++|||||+|+ |+..+..+.+.++++.+.. +.+++.++|+.+++..+||+
T Consensus 130 ~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 130 TMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQG-DFDKVVVNRRLESACAELVS 197 (207)
T ss_dssp HCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGG-GSSEEEECSSHHHHHHHHHH
T ss_pred hcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhc-cCcEEEECCCHHHHHHHHHH
Confidence 2233466 899999999999999998 7889999999999886533 45566689999999999999
Q ss_pred EEEec
Q 046656 367 IILLS 371 (1326)
Q Consensus 367 vilL~ 371 (1326)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-18 Score=201.28 Aligned_cols=173 Identities=15% Similarity=0.154 Sum_probs=126.4
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---------ccceEEEEccCCC-CC
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---------PQRTAAYISQHDV-HI 210 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 210 (1326)
+.+|+.+++|++++|+||||||||||++.|+|.+++. +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999876 899999998864321 1246899999987 88
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+.+||+|++.++... + ++ ..+++.+|+.+..+.
T Consensus 225 p~~tv~e~l~~~~~~-~----~d--------------------------------------~~lldt~Gl~~~~~~---- 257 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYS---- 257 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CS--------------------------------------EEEEECCCCSSCCHH----
T ss_pred hhhhHHHHHHHHHhC-C----CH--------------------------------------HHHHHhcCCChhhhh----
Confidence 899999999885321 0 00 001234555544433
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCc--cceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC---------hhh
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPAL--ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP---------APE 359 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~--illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~~ 359 (1326)
.+..|| |||++||+++..+|+ +|+|| ||+|||+.... +.+....+.+ +++++|. ...
T Consensus 258 -~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t-~iiiThlD~~~~gG~~lsi 325 (359)
T 2og2_A 258 -LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGIT-GLILTKLDGSARGGCVVSV 325 (359)
T ss_dssp -HHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCC-EEEEESCTTCSCTHHHHHH
T ss_pred -HHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCe-EEEEecCcccccccHHHHH
Confidence 344689 999999999999999 99999 99999997653 2332223444 4446662 223
Q ss_pred HHhhCCeEEEecCCeE
Q 046656 360 TYDLFDDIILLSDGQI 375 (1326)
Q Consensus 360 ~~~~~D~vilL~~G~i 375 (1326)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 3455677888877763
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-17 Score=190.28 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhce
Q 046656 961 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998763 799999994 3 2 7899
Q ss_pred eeEEecCcEEEEEcCCC
Q 046656 1032 LFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 1032 v~~l~~gg~~~~~G~~~ 1048 (1326)
+++|++ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999985 7999988864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-18 Score=195.57 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=116.0
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE-EEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-NITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
.+|+++++.+++|++++|+||||||||||++.|+|...+ .+| .|.+.+.........+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 479999999999999999999999999999999996542 235 56443333222222222233333221 12333
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC---
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 990 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq-rqrl~ia~aL~~~p~illLDEPts--- 990 (1326)
++.... + +.++..+.++++++..++. +.+. ...+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 443221 1 1122223344444322221 1111 12489999 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhc-CCEEEEEecCCc-H--------------------HHHHHhceeeEEecC
Q 046656 991 G---LDA-RAAAIVMRTVKNTVET-GRTVVCTIHQPS-I--------------------DIFEAFDELFLMKRG 1038 (1326)
Q Consensus 991 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~D~v~~l~~g 1038 (1326)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...+|++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6677899999998754 999999999952 1 466789999999975
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-20 Score=211.31 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=112.8
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~ 924 (1326)
+++|+++||+||||||||||+++|+|...+ . +|. +.++|++|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 899999999999999999999999997653 1 121 357999999998888 99999865221
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 046656 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004 (1326)
Q Consensus 925 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 1004 (1326)
.+.+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 11122222345677888887 44444443 2599999999999999999999999999999998521 112
Q ss_pred HHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 1005 KNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 1005 ~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
.++. + .+|++.|+.+.......+|.+.+.++
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 2222 3 34666676554444456777766543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-17 Score=201.56 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=69.9
Q ss_pred CCC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 960 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 960 ~~L-SgGqrqrl~ia~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
..| |||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||++||++. +...+|++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 356 999999999999999999 99999999999999999999999999987 899999999975 556799999997
Q ss_pred cC
Q 046656 1037 RG 1038 (1326)
Q Consensus 1037 ~g 1038 (1326)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-18 Score=198.46 Aligned_cols=128 Identities=10% Similarity=0.023 Sum_probs=95.9
Q ss_pred ceeEE-EeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 046656 142 DVSGI-IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 142 ~vs~~-i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
|+|.. +++|++++|+||||||||||+++|+|.++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 45543 7899999999999999999999999999874 332 368999999998888 9999986
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
+... .+....++ .....+.++.++ ....+. .+..+||||
T Consensus 143 ~~~~-~g~~~~~d----------------------------------~~~~~~~L~~l~-~~~~~~-----~~~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPESYN----------------------------------RRALMRFVTSVK-SGSDYA-----CAPVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGGBC----------------------------------HHHHHHHHHHHH-TTCSCE-----EEEEEETTT
T ss_pred HHHh-cCCChHHH----------------------------------HHHHHHHHHHhC-CCcccC-----CcccCChhh
Confidence 5321 11110000 012344566666 333333 344799999
Q ss_pred hHHHHHHHHhhcCCccceEecCCCCCCH
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNGLDS 328 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsgLD~ 328 (1326)
|||+++|++++.+|+|+|||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=177.67 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=67.7
Q ss_pred ccccCCChhhhH------HHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 291 EMVRGISGGQKK------RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 291 ~~~~~LSGGqkq------Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
..+..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++.. .+ .+|++++|+ +++.+.|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~-~~vi~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KI-PQVILVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GS-SEEEEEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cC-CEEEEEECh-HHHHHhC
Confidence 456789999999 67788889999999999999999999999999999998754 23 455557787 5788999
Q ss_pred CeEEEec--CCe
Q 046656 365 DDIILLS--DGQ 374 (1326)
Q Consensus 365 D~vilL~--~G~ 374 (1326)
|+|++|. +|.
T Consensus 321 d~~~~l~~~~g~ 332 (339)
T 3qkt_A 321 DHVIRISLENGS 332 (339)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEecCCc
Confidence 9999985 453
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-17 Score=193.37 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=100.3
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+ +.. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------ccc------
Confidence 789999999999999999999999999999999999987 8999999853 110 000
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
.+ .. +++ + .+ |
T Consensus 215 ----~~-----~~----------------------------------------------i~~-------~-----~g--g 225 (330)
T 2pt7_A 215 ----HK-----NY----------------------------------------------TQL-------F-----FG--G 225 (330)
T ss_dssp ----CS-----SE----------------------------------------------EEE-------E-----CB--T
T ss_pred ----ch-----hE----------------------------------------------EEE-------E-----eC--C
Confidence 00 00 000 0 01 8
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
||+||++||++|..+|++++|||||+. ++.+.|+.+. .+++++++++|... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3456666653 24444444556554 7888999999988863
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-16 Score=192.16 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=67.4
Q ss_pred cccCC-ChhhhHHHHHHHHhhcCC--ccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 292 MVRGI-SGGQKKRLTTGEMMVGPA--LALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 292 ~~~~L-SGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|++++. +.+|++++|... +...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~---~~~vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---TRQVLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH---HSEEEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC---CCEEEEEecCHH-HHHhCCEEE
Confidence 35567 999999999999999999 99999999999999999999999999864 345666788854 556799999
Q ss_pred EecCC
Q 046656 369 LLSDG 373 (1326)
Q Consensus 369 lL~~G 373 (1326)
+|.+|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-16 Score=157.46 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 960 SGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia------~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
..||||||||++|| ++|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.+|+++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii 133 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVI 133 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEE
Confidence 46999999999886 899999999999999999999999999999999877799999999997 3567899999
Q ss_pred EEe
Q 046656 1034 LMK 1036 (1326)
Q Consensus 1034 ~l~ 1036 (1326)
+|+
T Consensus 134 ~l~ 136 (148)
T 1f2t_B 134 RIS 136 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 994
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-16 Score=184.08 Aligned_cols=185 Identities=14% Similarity=0.056 Sum_probs=110.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceee-EEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG-RVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
..+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.+.+.+.......+.+.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999998765 46 56544322211000011111111100 011
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
.+++..+ . ....+....++.+++..++. + .+....
T Consensus 95 ~~~l~~~--------------~------------------------~~~~~~~~~~~~~l~~~~l~------i-~~~~~~ 129 (296)
T 1cr0_A 95 SDSLKRE--------------I------------------------IENGKFDQWFDELFGNDTFH------L-YDSFAE 129 (296)
T ss_dssp CHHHHHH--------------H------------------------HHHTHHHHHHHHHHSSSCEE------E-ECCCCS
T ss_pred ccccccC--------------C------------------------CCHHHHHHHHHHHhccCCEE------E-ECCCCC
Confidence 1111110 0 00011112233333222221 1 112235
Q ss_pred CChhh-hHHHHHHHHhhcCCccceEecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCEEEEEEecCh--h-------
Q 046656 296 ISGGQ-KKRLTTGEMMVGPALALFMDEISN---G---LDS-STTFHIVNSLRQNIHILNGTAVISLLQPA--P------- 358 (1326)
Q Consensus 296 LSGGq-kqRvsia~al~~~~~illLDEpts---g---LD~-~t~~~i~~~l~~~~~~~~~t~ii~i~q~~--~------- 358 (1326)
+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.+ |+.++|.. .
T Consensus 130 ~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~-vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 130 AETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVV-LVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp CCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCE-EEEEEECC----------
T ss_pred CCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe-EEEEEecCcccccccccc
Confidence 88898 67776 999999999999999999 5 455 66788999999988755544 55566663 3
Q ss_pred -------------hHHhhCCeEEEecCCeE
Q 046656 359 -------------ETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 359 -------------~~~~~~D~vilL~~G~i 375 (1326)
.+...||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-16 Score=178.23 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=97.5
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCee-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-SGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++... ++...++++|.
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 789999 89999999999999999999999999765 34 79999998764311 11111122110
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
.+++.. ..| |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 112211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+...+ ++. ++.|.+|++++|+.+ ....+||++.|..
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 86544 333 356999999999976 5678999999864
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-17 Score=210.57 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=112.3
Q ss_pred eEeeecceeEEeC-------CeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEE-EeecCCCC
Q 046656 835 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISG-YCEQNDIH 906 (1326)
Q Consensus 835 ~~vL~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-yv~Q~~~~ 906 (1326)
..+++|+++.+++ |++++|+|||||||||||+++ |... + ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~-----------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V-----------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H-----------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H-----------------HhheeEEeccCcC-
Confidence 4699999999987 999999999999999999999 8653 1 12244 9999753
Q ss_pred CCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 046656 907 SPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986 (1326)
Q Consensus 907 ~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLD 986 (1326)
.+||.|++.. + +|+.+.... +.+.+|+|+++ +++|++++.+|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 4555555421 1 111111111 11347777665 99999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE--EEcC
Q 046656 987 EPTSGLDARA-AAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI--YVGP 1046 (1326)
Q Consensus 987 EPtsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~--~~G~ 1046 (1326)
|||+|+|+.. ...++..|+.+.++ |+++|++||+++ .+...+|++.+++ |++. +.|+
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~ 936 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENE 936 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC----
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecC
Confidence 9999999987 46678899998876 999999999975 3445689988875 6777 4454
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-17 Score=183.77 Aligned_cols=155 Identities=8% Similarity=0.003 Sum_probs=97.9
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4467999999999999999999999999999999999854 222222 2355689999985 6677899
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 046656 913 YESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 992 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL 992 (1326)
.|++.+........+ +.....+.+.+.++.+ .+..+..+ ..||+||+||+.+ ++++.+|++++||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876432211111 1111122244445543 23333333 3599999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 046656 993 DARAAAIVMRTVKNTVETGRTVVCTIHQ 1020 (1326)
Q Consensus 993 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1020 (1326)
|.. +.++ .+.||++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 864 2222 37899999996
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=196.92 Aligned_cols=149 Identities=16% Similarity=0.094 Sum_probs=107.1
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhc--------CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCC
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYISGNITISGYPKKQETFTRISGYCEQNDI 905 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~ 905 (1326)
.+.+++|+++.+++|++++|+|||||||||||++++ |..-+ ..+.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--ccccc---------------chHH---HH
Confidence 346999999999999999999999999999999994 32211 11110 1100 00
Q ss_pred CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEE
Q 046656 906 HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVEL--VANPSII 983 (1326)
Q Consensus 906 ~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL--~~~p~il 983 (1326)
++..+++.+ .+ ..++|++++++..+|++| +.+|+++
T Consensus 708 ----------------------------------i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 001111111 11 125888888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 984 FMDEPTSGLDARAAAIV-MRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 984 lLDEPtsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||||||+|+|+.....+ +..++.+.+ .|+|+|++||+. ++.+.+|++..+.+ |++.+.++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~ 808 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE 808 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence 99999999999988777 667777775 499999999995 46788999999986 788887764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-17 Score=189.07 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=121.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc----------ccccceEEEeecCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ----------ETFTRISGYCEQND 904 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~gyv~Q~~ 904 (1326)
..+|+++ +.|.+||+++|+|+||||||||+++|+|...+ ..|.|.+.|.+... ..+.+.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4599999 99999999999999999999999999998764 47999998864211 11345577777754
Q ss_pred CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 046656 905 IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK--PLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 982 (1326)
Q Consensus 905 ~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~i 982 (1326)
. .+.+.+.-... ...+.+.....+-. .+.|. ...||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~~------------~~~~ae~~~~~~~~vl~~ld~------~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 136 R-----PALERMKAAFT------------ATTIAEYFRDQGKNVLLMMDS------VTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp S-----CHHHHHHHHHH------------HHHHHHHHHTTTCEEEEEEET------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred C-----CHHHHHHHHHH------------HHHHHHHHHhccccHHHHHhh------HHHHHHHH-HHHHHH---cCCCCc
Confidence 2 22222211000 00011111110100 00121 23599999 899999 688887
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh--cCC-----EEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 983 IFMDEPTSGLDARAAAIVMRTVKNTVE--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 983 llLDEPtsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|+|||+.....+.++++++.+ .|. ||++++||.+ ...+|++++|.+ |+++..|++
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999864 477 9999999987 356999999985 799988764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-16 Score=177.02 Aligned_cols=177 Identities=15% Similarity=0.052 Sum_probs=102.2
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 214 (1326)
+.+++|+|+|+.+++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3566999999999999999999999999999999999976 222232 1246789999985 677899
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
+.|++.+.......... .. .+. ......++.+ .+..+ ....
T Consensus 75 ~~~~~~~~~~~~~~~~~----~~-------------~~~---------------~~~~~~L~~l--~~~~~-----~~~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----DA-------------FDN---------------DLMHRTLKNI--VEGKT-----VEVP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----GG-------------BCH---------------HHHHHHHHHH--HTTCC-----EEEC
T ss_pred HhHhhhhhccCCCCCCc----cc-------------ccH---------------HHHHHHHHHH--HCCCC-----eecc
Confidence 99999875432211100 00 000 0011122222 22333 2345
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHh-hCCeEEEecCC
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD-LFDDIILLSDG 373 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~-~~D~vilL~~G 373 (1326)
.+|+||+||+.+ ++++.+|+++++|||....|.. +.++ . +.+|+..+|+...+.+ +++++ .+|
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~-~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---F-HLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---C-SEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---c-CeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 799999999987 5788899999999998888753 2221 2 4455555665444433 34444 556
Q ss_pred eEEEEcChhhHHH
Q 046656 374 QIVYQGPCELVLD 386 (1326)
Q Consensus 374 ~iv~~G~~~~~~~ 386 (1326)
+ +.+++.+
T Consensus 180 ~-----~~e~~~~ 187 (245)
T 2jeo_A 180 R-----DLEQILT 187 (245)
T ss_dssp ------CHHHHHH
T ss_pred C-----CHHHHHH
Confidence 4 5666654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-16 Score=171.91 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=94.5
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCC-----eeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-----YISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~-----~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
+-+++|++++|+||||||||||+++|+|..... ...|.+++++..... .+.+++++|...+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 579999999999999999999999999843211 134577777653210 1122333333222211 2222221
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH-HHHHHHHHHHHhh-------CCcEEEEeCCC
Q 046656 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE-QRKRLTIAVELVA-------NPSIIFMDEPT 989 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG-qrqrl~ia~aL~~-------~p~illLDEPt 989 (1326)
+. ...+.+ +++.+..+.+++. +|++|++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 012333 3444566666665 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-cCCEEEEEecCCcH---HHHHHhceeeEEecC
Q 046656 990 SGLDAR-------A-----AAIVMRTVKNTVE-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 1038 (1326)
Q Consensus 990 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~D~v~~l~~g 1038 (1326)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|++++|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999983 2 2367777777764 49999999995431 256678999999874
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-15 Score=193.76 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=70.1
Q ss_pred cCCChhhhHHHHHHHHh--hcCCccceEecCCCCCCHHHHHHH-HHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 294 RGISGGQKKRLTTGEMM--VGPALALFMDEISNGLDSSTTFHI-VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al--~~~~~illLDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ +..++.+.... +.+++.++|. .+..+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~-g~~vl~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKI-GAFCMFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTT-CCEEEEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEcCc-HHHHHHhccccee
Confidence 46899888888888888 899999999999999999999888 55556654423 4555557777 5677899999999
Q ss_pred cCCeEEEEcChhhH
Q 046656 371 SDGQIVYQGPCELV 384 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~ 384 (1326)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988877654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-16 Score=185.88 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=125.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC----------CccceEEEEcc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF----------VPQRTAAYISQ 205 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q 205 (1326)
...+|+++ +.+.+|++++|+||||||||||+++|+|..+++ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999987 89999988652111 11345777777
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
.+. ...+.+.-... .. ...+ .....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~-------------~~-----------------------------~~ae-~~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFT-------------AT-----------------------------TIAE-YFRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHH-------------HH-----------------------------HHHH-HHHTTT----CE
T ss_pred CCC-----CHHHHHHHHHH-------------HH-----------------------------HHHH-HHHhcc----cc
Confidence 532 22222211000 00 0000 011111 11
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCE-----EEEEEecChhhH
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGT-----AVISLLQPAPET 360 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t-----~ii~i~q~~~~~ 360 (1326)
..+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.+.+.....+++ +|++.+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 110002355699999 899999 577776 99999999999999998864312355 6676778876
Q ss_pred HhhCCeEEEecCCeEEEEcChhhH
Q 046656 361 YDLFDDIILLSDGQIVYQGPCELV 384 (1326)
Q Consensus 361 ~~~~D~vilL~~G~iv~~G~~~~~ 384 (1326)
..+||++++|.+|+++.+|+..++
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 577999999999999999987765
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-16 Score=203.47 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=98.3
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
++.+++||++.+++|++++|+|||||||||||+++++..... .. |...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 356999999999999999999999999999999998632100 00 1000000 0011111 1111111111
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD 993 (1326)
+ ..... .+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d----------------------------------~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 D----------------------------------NIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred H----------------------------------HHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 1 11111 13589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-cCCEEEEEecCCcHHHHHHhcee
Q 046656 994 ARAAAIVM-RTVKNTVE-TGRTVVCTIHQPSIDIFEAFDEL 1032 (1326)
Q Consensus 994 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v 1032 (1326)
+.....+. ..++.+.+ .|+|||++||++. +.+++|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99888887 67777765 5999999999964 55667765
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-15 Score=183.63 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=111.1
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhh
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSA 223 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 223 (1326)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .+++++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 5689999999999999999999999999987653 32 12455666531 12222210
Q ss_pred hhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHH
Q 046656 224 RCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKR 303 (1326)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR 303 (1326)
+ . +. + .+. +...|+....+ ..+..|||||+||
T Consensus 330 ~---~-----------------g~--~--------------------~~~-~~~~g~~~~~~-----~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S---W-----------------GM--D--------------------FEE-MERQNLLKIVC-----AYPESAGLEDHLQ 361 (525)
T ss_dssp T---T-----------------SC--C--------------------HHH-HHHTTSEEECC-----CCGGGSCHHHHHH
T ss_pred H---c-----------------CC--C--------------------HHH-HHhCCCEEEEE-----eccccCCHHHHHH
Confidence 0 0 00 0 001 12344444333 3456799999999
Q ss_pred HHHHHHhhcCCccceEecCCCCCCHH-----HHHHHHHHHHHHHHhcCCEEEEEEecCh----------hhHHhhCCeEE
Q 046656 304 LTTGEMMVGPALALFMDEISNGLDSS-----TTFHIVNSLRQNIHILNGTAVISLLQPA----------PETYDLFDDII 368 (1326)
Q Consensus 304 vsia~al~~~~~illLDEptsgLD~~-----t~~~i~~~l~~~~~~~~~t~ii~i~q~~----------~~~~~~~D~vi 368 (1326)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. . +.+++.++|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~-g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-E-EITGLFTNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-T-TCEEEEEEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-C-CCEEEEEECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 89999998888754 3 44555566665 66778999999
Q ss_pred EecCCe
Q 046656 369 LLSDGQ 374 (1326)
Q Consensus 369 lL~~G~ 374 (1326)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-15 Score=193.08 Aligned_cols=133 Identities=20% Similarity=0.146 Sum_probs=97.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+++|+|+. |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHHH
Confidence 5699999998 999999999999999999999996420 1123221 1 1 1234677766 334445544
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---C
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 989 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL--~~~p~illLDEP---t 989 (1326)
++. .++|+|+++++.+++++ +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 331 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhcCCEEEEEecCCcHHHHHHh
Q 046656 990 SGLDARAA-AIVMRTVKNTVETGRTVVCTIHQPSIDIFEAF 1029 (1326)
Q Consensus 990 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1029 (1326)
++||..+. ..+.+.|++ .|+|+|++||+. ++.+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 99998875 467777765 589999999985 344443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-16 Score=182.89 Aligned_cols=157 Identities=15% Similarity=0.063 Sum_probs=84.9
Q ss_pred CceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC-CCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCC
Q 046656 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~T 911 (1326)
+++.++++++++| +|+|+||||||||++.|+|. .. +.+| |.++|.+.......+.+++++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 3467999999988 99999999999999999996 44 3467 8888876543222345789999888888889
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 990 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts- 990 (1326)
++|+..++.... . .+.....++.+. +..+..+ +++|||||||+.+||+++ +|++||||+
T Consensus 80 v~Dt~g~~~~~~-~----~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAIN-C----RDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcC-c----HHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 999887753321 0 000011112221 1223333 359999999999998875 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCc
Q 046656 991 GLDARAAAIVMRTVKNTVET-GRTVVCTIHQPS 1022 (1326)
Q Consensus 991 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1022 (1326)
|||+... +.++++.+. +.++|++.||..
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 5999873 555655443 788999999863
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-15 Score=165.35 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=93.4
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCC----ceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSL----KVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~----~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
+-+++|++++|+||||||||||++.|+|...+.. .-.|.+.+++.+.. ..+.++++.|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654410 01346666664310 11234444444333322 4444433
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
+.. ..++++
T Consensus 96 ~~~-----------------------------------------------------------------------~~~~~~ 104 (231)
T 4a74_A 96 VAR-----------------------------------------------------------------------AFNSNH 104 (231)
T ss_dssp EEE-----------------------------------------------------------------------CCSHHH
T ss_pred EEe-----------------------------------------------------------------------cCChHH
Confidence 311 122222
Q ss_pred -hHHHHHHHHhh-------cCCccceEecCCCCCCHH-------H-----HHHHHHHHHHHHHhcCCEEEEEEecChhh-
Q 046656 301 -KKRLTTGEMMV-------GPALALFMDEISNGLDSS-------T-----TFHIVNSLRQNIHILNGTAVISLLQPAPE- 359 (1326)
Q Consensus 301 -kqRvsia~al~-------~~~~illLDEptsgLD~~-------t-----~~~i~~~l~~~~~~~~~t~ii~i~q~~~~- 359 (1326)
++++..++.++ .+|+++++||||+++|+. . ..++++.|+++++.. +.+|+.++|...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~-g~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHC-CCeEEEEeecccCc
Confidence 22233333333 489999999999999983 1 236788888876654 4556667884444
Q ss_pred ---HHhhCCeEEEecCCe
Q 046656 360 ---TYDLFDDIILLSDGQ 374 (1326)
Q Consensus 360 ---~~~~~D~vilL~~G~ 374 (1326)
+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 888999999998753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-15 Score=173.88 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=102.6
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cc--cceEEEeecCCCCCCCCCHHHHHH
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TF--TRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
+|++++|+||||||||||++.|+|...+ .+|+|.++|.+.... .+ ++.++|++|+....|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999999998763 479999999876321 11 245899999998888889999987
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHH
Q 046656 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 995 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPtsgLD~~ 995 (1326)
+... + ..+ ..+++..|+.+..+.. ++..++||++|||+++.+|+ +|.|| |+++.
T Consensus 179 ~~~~-~---~~d--------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~--- 234 (304)
T 1rj9_A 179 AMKA-R---GYD--------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ--- 234 (304)
T ss_dssp HHHH-H---TCS--------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT---
T ss_pred HHHh-C---CCC--------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH---
Confidence 6421 1 000 0122223332222211 45566999999999999999 44555 45444
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCC
Q 046656 996 AAAIVMRTVKNTVET-GRTVVCTIHQP 1021 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~-g~tvi~~~H~~ 1021 (1326)
.+++.++++.+. |.|+|++||+.
T Consensus 235 ---~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 235 ---NGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECTT
T ss_pred ---HHHHHHHHHHHHcCCcEEEEECCc
Confidence 455666666544 89999999974
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=144.43 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=69.8
Q ss_pred CccccCCChhhhHHHHHH------HHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 290 DEMVRGISGGQKKRLTTG------EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia------~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.. . +.+|+.++|+. +..+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-K-IPQVILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-G-SSEEEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-c-CCEEEEEEChH-HHHHh
Confidence 456778999999999876 899999999999999999999999999999998754 2 44555677776 67889
Q ss_pred CCeEEEe--cCCeE
Q 046656 364 FDDIILL--SDGQI 375 (1326)
Q Consensus 364 ~D~vilL--~~G~i 375 (1326)
||++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-17 Score=176.32 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=111.3
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC--CCCCHHHHHHHHHHh
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS--PLVTVYESLLYSAWL 922 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~~Tv~E~l~f~~~l 922 (1326)
.++|+++||+|+||||||||+++|+|...+ .++|++|++.+. ..+|+++++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999996531 368999988776 5678988876531
Q ss_pred hccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------
Q 046656 923 RLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 991 (1326)
Q Consensus 923 r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGq----rqrl~ia~aL~~~p~illLDEPtsg------- 991 (1326)
..+...+ .+.+.++++.+++.+..+... ..+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAFD----LALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGBC----HHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhhh----HHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1111111 234677788888776555432 3588886 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhcCCEEEEEecCC
Q 046656 992 LDARAAAIVMRTVKNT-VETGRTVVCTIHQP 1021 (1326)
Q Consensus 992 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1021 (1326)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-15 Score=175.43 Aligned_cols=162 Identities=10% Similarity=0.108 Sum_probs=80.4
Q ss_pred cccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc-cCCCCceeeEEEECCccCCCCCccceEEEEccCCC
Q 046656 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ-LDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDV 208 (1326)
Q Consensus 130 ~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~ 208 (1326)
++++++++.+++++++.| +|+||||+|||||++.|+|. +.+. +| |.++|.++......+.++|++|.+.
T Consensus 4 l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 4 LPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp --------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---
T ss_pred CcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCC
Confidence 344556678999999998 99999999999999999997 6665 78 8888876543222356799999888
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
....+||.||..++..... ..+++ .+.+++.+. .
T Consensus 74 ~~~~ltv~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~---- 107 (301)
T 2qnr_A 74 VKLRLTVVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------F---- 107 (301)
T ss_dssp CCEEEEEEEEC------------CT-----------------------------------THHHHHHHH------H----
T ss_pred cccCcchhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------H----
Confidence 7888999999887542210 00000 001111110 1
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCC-CCHHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNG-LDSSTTFHIVNSLRQNIHILNGTAVISLLQPA 357 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsg-LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 357 (1326)
+...+++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ..+.+++...|+.
T Consensus 108 -~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 108 -ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp -HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred -HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 1334579999999999988875 9999999985 999863 44555432 2245555556654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-15 Score=178.00 Aligned_cols=164 Identities=18% Similarity=0.107 Sum_probs=99.5
Q ss_pred eeecc-eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCee----EEE-EEEcCccCCcccccceEEEeecCCCCCCCC
Q 046656 837 LLNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----SGN-ITISGYPKKQETFTRISGYCEQNDIHSPLV 910 (1326)
Q Consensus 837 vL~~v-s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~----~G~-i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~ 910 (1326)
.|+++ .+.+++|++++|+||||||||||++.|++.....+. .|. |+|++.+.. .++.+++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 35554 588999999999999999999999999986421112 367 888886531 12234555554332221
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCcEE
Q 046656 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV-------ANPSII 983 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~-------~~p~il 983 (1326)
++.||+.+. +. .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 222222110 00 02567888888888888 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEc
Q 046656 984 FMDEPTSGLDARA------------AAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1045 (1326)
Q Consensus 984 lLDEPtsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G 1045 (1326)
++||||+++|+.. ...+++.|+++++ .|+|||+++|... +....++...... ||+++.++
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~ 308 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHS 308 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------------CCCCCTT
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccC-CcceEeec
Confidence 9999999999852 3456666777664 4899999999864 3333344444454 45555443
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-15 Score=195.94 Aligned_cols=159 Identities=15% Similarity=0.107 Sum_probs=111.3
Q ss_pred ceeecceeEEEeC-------ceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEE-EEccCCC
Q 046656 137 LTILKDVSGIIKP-------GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA-YISQHDV 208 (1326)
Q Consensus 137 ~~iL~~vs~~i~~-------G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~ 208 (1326)
..+++|+++.+++ |++++|+|||||||||||+++ |.+.+ ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 98752 11344 8999753
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
.+||.|+|.. + +|+.+..+
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555421 0 01100000
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHH-HHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTF-HIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~-~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.....+|++++ ++++|++++.+|+++|||||++|+|+.... .++..++.+.+. .+.+++.++|..+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~-~g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET-IKCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT-SCCEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHhCCcc
Confidence 11224677666 499999999999999999999999998854 467777777543 2456666889998888899999
Q ss_pred EEecCCeEE--EEcChh
Q 046656 368 ILLSDGQIV--YQGPCE 382 (1326)
Q Consensus 368 ilL~~G~iv--~~G~~~ 382 (1326)
.++ +|++. +.|+++
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 556544
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-14 Score=186.60 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=105.1
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+++|+++. ++|++++|+|||||||||||++|+|....+ . .|...... ...++++.| ++..+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 999999999999999999999999853110 0 12111111 123555554 333444444
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
++..+ .+.+|+|+++ +..+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 43210 0236777654 4455556899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 995 RAAAIV-MRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 995 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
.....+ +..++.+.+ .|+|+|++||++. +.+.+|++..+.+ |++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEEEEEc
Confidence 766664 778888877 4999999999975 4568898877775 57666543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-15 Score=165.22 Aligned_cols=133 Identities=15% Similarity=0.211 Sum_probs=94.2
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
++|+|+| +++|++++|+|||||||||||++|+|.++|. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 8999999999999999999999999998752 279999998764311 11111111110
Q ss_pred HHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCC
Q 046656 218 TLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297 (1326)
Q Consensus 218 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 297 (1326)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011210 112
Q ss_pred hhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 298 GGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 298 GGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
|++||++|..+|+++++|||| |+.+...+++ . +. . +.+|++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~-g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-T-GHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-T-TCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-c-CCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988765543 2 22 2 445566667654 6788999988864
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.2e-14 Score=158.92 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=102.7
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhh
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 923 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr 923 (1326)
.+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 488999999999999999999999998432 2444 23443211 2346677665421 01111111 111
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHHH---H
Q 046656 924 LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 998 (1326)
Q Consensus 924 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts--gLD~~~~---~ 998 (1326)
.+... ...+++++.+.+.+..+..+ ..||+||++++ ++++.+|++|++||||+ ++|.... .
T Consensus 92 --~~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 --AHLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp --TTSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --hhcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 12222 22566788888877665543 35999998865 68889999999999999 9997443 7
Q ss_pred HHHHHHHHHH-hcCCEEEEEecCCc
Q 046656 999 IVMRTVKNTV-ETGRTVVCTIHQPS 1022 (1326)
Q Consensus 999 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1022 (1326)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-16 Score=167.85 Aligned_cols=159 Identities=23% Similarity=0.250 Sum_probs=104.3
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhhhccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 228 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 228 (1326)
|++++|+||||||||||++.|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999987 5 78 888887664332 246789999963 111 1111 01000
Q ss_pred CccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHH-HH
Q 046656 229 GSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT-TG 307 (1326)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs-ia 307 (1326)
.++ +...+..+| +....+|||||+++. ++
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~-~~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVG-QYVVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESS-SSEECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccc-eEEEcchHHHHHHHHHHh
Confidence 000 000112344 234569999999984 44
Q ss_pred H---HhhcCCccceEec--CCCCCCHHHHHHHHHHHHHHHHhcCCEEEE---EEecChhhHHhhCCeEEEecCCeEEEEc
Q 046656 308 E---MMVGPALALFMDE--ISNGLDSSTTFHIVNSLRQNIHILNGTAVI---SLLQPAPETYDLFDDIILLSDGQIVYQG 379 (1326)
Q Consensus 308 ~---al~~~~~illLDE--ptsgLD~~t~~~i~~~l~~~~~~~~~t~ii---~i~q~~~~~~~~~D~vilL~~G~iv~~G 379 (1326)
+ |+..+|++++||| |+..+|......+.+.+.+ ..++|+ .++|..+ ..+.|+|..+.+|+++.-.
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-----~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-----PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-----SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-----CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5789999999999 8988998765555554442 234443 3336553 3567888888899987643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-15 Score=165.46 Aligned_cols=141 Identities=15% Similarity=0.133 Sum_probs=101.6
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCC--CCCCHHHHHHhhhh
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHI--GEMTVRETLAFSAR 224 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 224 (1326)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 478999999999999999999999998753 478999988766 56899998766321
Q ss_pred hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh----
Q 046656 225 CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ---- 300 (1326)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 300 (1326)
.. ...+ .......++.+++.+..+. ....+|+||
T Consensus 61 ~~---~~~~----------------------------------~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---DAFD----------------------------------LALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPR 98 (211)
T ss_dssp SG---GGBC----------------------------------HHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSS
T ss_pred Ch---hhhh----------------------------------HHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCC
Confidence 10 0000 0112334566666554432 345689996
Q ss_pred hHHHHHHHHhhcCCccceEecCCCC-------CCHHHHHHHHHHHHHHHHhcCCEEEE
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNG-------LDSSTTFHIVNSLRQNIHILNGTAVI 351 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsg-------LD~~t~~~i~~~l~~~~~~~~~t~ii 351 (1326)
+||++++++++.+|+++++||||++ ||+.....+.+.+++.....+.+++.
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~ 156 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEG 156 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHH
Confidence 4788999999999999999999999 99999999999887754333444443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=169.45 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=89.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESL 916 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l 916 (1326)
+|+++ .+.+|++++|+||||||||||+++|+|...+. ..|.|...+.+... ......+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~-------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRD-------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTT--------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccc--------
Confidence 45554 57899999999999999999999999976421 13555443333221 11122234444321111
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~ 996 (1326)
.++..+ +||++|..+|++|++|||| |.++
T Consensus 182 --------------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 182 --------------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp --------------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 122222 9999999999999999999 7666
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 997 AAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 997 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
... +.+.+++|.|||+|+|+.+. . +.+||++.|..|
T Consensus 211 ~~~----~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 211 IRL----ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHH----HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHH----HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 444 34446679999999999873 3 789999999643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-15 Score=174.36 Aligned_cols=168 Identities=19% Similarity=0.183 Sum_probs=100.2
Q ss_pred eeecce-eEEEeCceEEEEecCCCCChhHHHHHHhccc--CCC-CceeeE-EEECCccCCCCCccceEEEEccCCCCCCC
Q 046656 138 TILKDV-SGIIKPGRMTLLLGPPSSGKTTLLLALAGQL--DSS-LKVSGR-VTYNGHDMNEFVPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 138 ~iL~~v-s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 212 (1326)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+ ....|+ |.+++.+. + .++.+++++|...+.+.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 346665 6899999999999999999999999999987 443 011367 88888653 1 13456667776544433
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
++.||+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555555432110
Q ss_pred ccCCChhhhHHHHHHHHhh-------cCCccceEecCCCCCCHHH------------HHHHHHHHHHHHHhcCCEEEEEE
Q 046656 293 VRGISGGQKKRLTTGEMMV-------GPALALFMDEISNGLDSST------------TFHIVNSLRQNIHILNGTAVISL 353 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~-------~~~~illLDEptsgLD~~t------------~~~i~~~l~~~~~~~~~t~ii~i 353 (1326)
-|++|++++.++++++ .+|+++++||||+++|+.. ..++++.|+++++.. +++++.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~-~~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLY-DIAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHc-CcEEEEE
Confidence 0223333333333333 7899999999999999852 356666777776644 5556667
Q ss_pred ecChhhHHhhCCeEEEecCCeEEEEcC
Q 046656 354 LQPAPETYDLFDDIILLSDGQIVYQGP 380 (1326)
Q Consensus 354 ~q~~~~~~~~~D~vilL~~G~iv~~G~ 380 (1326)
+|...+....+++......|+++.++.
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 777665555566667777787766554
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-14 Score=184.91 Aligned_cols=132 Identities=15% Similarity=0.127 Sum_probs=95.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC-CCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD-SSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. . ..+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p--a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P--AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e--hhccceeeHHH---hhccCCH
Confidence 4678999998 99999999999999999999999863 33 45431 1 11345677766 3445555
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55442 14
Q ss_pred CChhhhHHHHHHHHh--hcCCccceEecC---CCCCCHHHH-HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 296 ISGGQKKRLTTGEMM--VGPALALFMDEI---SNGLDSSTT-FHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 296 LSGGqkqRvsia~al--~~~~~illLDEp---tsgLD~~t~-~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ . +.+++.++|..+. .+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~-g~~vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----R-RAYTLFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----H-TCEEEEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----C-CCEEEEEeCCHHH-HHhh
Confidence 799999999999999 999999999999 999998875 578887765 2 3445556777543 4454
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-14 Score=159.77 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=106.1
Q ss_pred Eeeeccee-EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccc---eEEEeecCCCCCCCCC
Q 046656 836 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTR---ISGYCEQNDIHSPLVT 911 (1326)
Q Consensus 836 ~vL~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gyv~Q~~~~~~~~T 911 (1326)
..|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+.......+ ..++.+|+.... .+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 46888885 899999999999999999999999997543 12345554433221111000 011111110000 000
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCC
Q 046656 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPS--IIFMDEPT 989 (1326)
Q Consensus 912 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~--illLDEPt 989 (1326)
. ++.....++ .... ....|.++.++...+.....+|+ +|++||||
T Consensus 87 ------------~------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 87 ------------I------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ------------E------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ------------E------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 000000000 0000 12359999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-cCCEEEEEecCCc-------HHHHHHhceeeEEecC
Q 046656 990 SGL--DARAAAIVMRTVKNTVE-TGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 990 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~D~v~~l~~g 1038 (1326)
+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...+|++++|.+.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 887 99888999999999864 5999999999972 1367789999999863
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=163.29 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=64.6
Q ss_pred ccCCChhhhHHHHHHHHhh----cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 293 VRGISGGQKKRLTTGEMMV----GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
+..||||||||++||++|+ .+|++++||||+++||+..+..+.+.+++... .++.+++++|. .+..+.||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEE
Confidence 3459999999999999999 68999999999999999999999999988642 24556667777 56778999999
Q ss_pred Eec
Q 046656 369 LLS 371 (1326)
Q Consensus 369 lL~ 371 (1326)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-14 Score=180.61 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=98.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
..+++|+|+.+++|++++|+|||||||||||+++++..-.. ..| . +.+... +.++..+.++..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~----~vpa~~-~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------S----YVPAEE-ATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------C----CBSSSE-EEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------c----cccchh-hhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998753210 011 0 001110 1111111111111111
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
+++. .....+
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 1110 123468
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE-ecCCe
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIV-NSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL-LSDGQ 374 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~-~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil-L~~G~ 374 (1326)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+.. +.+++.++|+. +..+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~-g~tvl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDV-KSLTLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTT-CCEEEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc-CCeEEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999998 8899999999999999999999987 5666664433 45556677775 45566665421 34444
Q ss_pred EEE
Q 046656 375 IVY 377 (1326)
Q Consensus 375 iv~ 377 (1326)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-16 Score=165.19 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=102.8
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~ 926 (1326)
|++++|+||||||||||+++|+|... .+| |.++|++..+ ...++.+||++|+. .... +++ +.+. .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~--~ 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG--L 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC--C
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc--c
Confidence 78999999999999999999999764 257 8888876643 23567789999975 1111 111 0000 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHH
Q 046656 927 EVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 999 (1326)
Q Consensus 927 ~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl-~ia~---aL~~~p~illLDE--PtsgLD~~~~~~ 999 (1326)
. ..+ ..+..+|..+ ..+|+|||+++ ++++ |+..+|++||||| ||..+|......
T Consensus 67 ~------------------~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 E------------------PPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp C------------------CCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred c------------------CCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0 000 0111333322 25899999988 4454 5789999999999 899999876555
Q ss_pred HHHHHHHHHhcCCEEEE----EecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 1000 VMRTVKNTVETGRTVVC----TIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
+.++++ ...++|+ ++|+.+ ....|++..+. +|+++...+
T Consensus 128 l~~~l~----~~~~~ilgti~vsh~~~---~~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTLS----TPGTIILGTIPVPKGKP---LALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHHH----CSSCCEEEECCCCCSSC---CTTHHHHHTTC-CSEEEECCS
T ss_pred HHHHHh----CCCcEEEEEeecCCCCc---hHHHHHHeecC-CcEEEEeCh
Confidence 555444 4445553 239864 23568887776 478777554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-14 Score=165.38 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=100.8
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---------cceEEEEccCCCCCCCCCHHHHH
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---------QRTAAYISQHDVHIGEMTVRETL 219 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 219 (1326)
+|++++|+||||||||||++.|+|.++|+ +|+|.++|.++..... ++.++|++|++...|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999987 8999999988753321 24589999998888889999999
Q ss_pred HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChh
Q 046656 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG 299 (1326)
Q Consensus 220 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 299 (1326)
.++... +. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~~----d~--------------------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY----DL--------------------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-TC----SE--------------------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-CC----CE--------------------------------------EEecCCCCCCchH--------HHHHHH
Confidence 864311 00 00 0011122221111 124555
Q ss_pred hhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 046656 300 QKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356 (1326)
Q Consensus 300 qkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 356 (1326)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.+. ++++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~-iivTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTG-VIVTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSE-EEEECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcE-EEEECC
Confidence 68999999999999994444 4555555566666666554334444 446665
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-15 Score=185.66 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=109.9
Q ss_pred EEEecCCCCChhHHHHHHhcccCC-CCceeeEEEECCccCC------CCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLDS-SLKVSGRVTYNGHDMN------EFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 225 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 225 (1326)
++|+|||||||||||++|+|...| + +|.|+++|.++. ....++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 5 899999998852 112356799999999999999999999875432
Q ss_pred ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHH
Q 046656 226 QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT 305 (1326)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 305 (1326)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 11000 0011 11222
Q ss_pred HHHHhhcCCccceEecC------CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChh----hHHhh--------CCeE
Q 046656 306 TGEMMVGPALALFMDEI------SNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAP----ETYDL--------FDDI 367 (1326)
Q Consensus 306 ia~al~~~~~illLDEp------tsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~----~~~~~--------~D~v 367 (1326)
++......|+++++||| |+|||+....++.+.++++.....+.+++.++|+.+ ++..+ ...|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22223357999999999 999999999999999998755445666677777654 22222 2457
Q ss_pred EEecCCeEEEEcChhhHHH
Q 046656 368 ILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~~ 386 (1326)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8888888887777655443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-14 Score=177.66 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=92.9
Q ss_pred EEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC------cccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc
Q 046656 851 TALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK------QETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~ 924 (1326)
+||+|+||||||||+++|+|...+ ..+|.|+++|.++. ...+++.+||++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998653 14899999998741 13466789999999999999999999987532211
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHH
Q 046656 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP------TSGLDARAAA 998 (1326)
Q Consensus 925 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP------tsgLD~~~~~ 998 (1326)
... .+ +| ++++.++.+...+|+++++||| |+|||+....
T Consensus 127 ~~~----------------~~----------------~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG----------------MG----------------IS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS----------------SC----------------CC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc----------------cc----------------cc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 00 11 0111122222348999999999 9999999999
Q ss_pred HHHHHHHHHHhc--CCEEEEEecCCc
Q 046656 999 IVMRTVKNTVET--GRTVVCTIHQPS 1022 (1326)
Q Consensus 999 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1022 (1326)
.+.++++++..+ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 677888999875
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.6e-13 Score=146.70 Aligned_cols=78 Identities=13% Similarity=0.012 Sum_probs=63.2
Q ss_pred CCChhhhHHHHHHHHhhcCCc--cceEecCCCCC--CHHHHHHHHHHHHHHHHhcCCEEEEEEecCh--------hhHHh
Q 046656 295 GISGGQKKRLTTGEMMVGPAL--ALFMDEISNGL--DSSTTFHIVNSLRQNIHILNGTAVISLLQPA--------PETYD 362 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~--illLDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~--------~~~~~ 362 (1326)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+++.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888777778999 99999999888 9999999999999987643 56666678877 55888
Q ss_pred hCCeEEEecCC
Q 046656 363 LFDDIILLSDG 373 (1326)
Q Consensus 363 ~~D~vilL~~G 373 (1326)
+||+|++|+..
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-13 Score=148.90 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=94.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC---CCeeEEEEEEcCc
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYISGNITISGY 886 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---~~~~~G~i~i~g~ 886 (1326)
++++|+++.+. ..++++ +.+++|+.++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 56778877663 136777 7899999999999999999999999999751 0133455433211
Q ss_pred cC--CcccccceEEEeecCCCCCCCC---CHHHHHHHHHH-hhc--------cCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 046656 887 PK--KQETFTRISGYCEQNDIHSPLV---TVYESLLYSAW-LRL--------RTEVDSETRKMFIEEIMELVELKPLR-Q 951 (1326)
Q Consensus 887 ~~--~~~~~~~~~gyv~Q~~~~~~~~---Tv~E~l~f~~~-lr~--------~~~~~~~~~~~~v~~~l~~l~l~~~~-~ 951 (1326)
-. ....+....|+.... .+.. ..+..+..... .+. .........+..+.+.++..++..+. .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 00 000000111211100 0000 01111111110 000 00000011122345566666665321 2
Q ss_pred ccccCCCCCCCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 046656 952 SLVGLPGESGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT 1013 (1326)
Q Consensus 952 ~~vg~~~~~~LSgGqrqr-l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t 1013 (1326)
..+ ..+|+||||| +..+++++.+|+++++|||||++|......+++.|.++..+|.|
T Consensus 145 nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 222 2489999999 89999999999999999999999999999999999988765544
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-14 Score=171.40 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=94.4
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.+.++|+++.+. ++.+++|++|+| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 367788876652 245899999988 999999999999999999976421112222222211
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
....+.+++++|++...+.+|+.|++.++.... .... ...+.+.+ +. .++.+.+|
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~~--------~~~~~l~q 125 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------DS--------KFEDYLNA 125 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------HH--------HHHHHTTT
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------HH--------HHHHHHHH
Confidence 112346799999988888899999987754321 0000 11111111 11 25667788
Q ss_pred HHHHHHHHhhCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 969 RLTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 969 rl~ia~aL~~~p~---illLDEPt-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
|++|||+++.+|+ +|++|||| .|||+... +.++.+. .+.+||+++|..+
T Consensus 126 r~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 126 ESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp SCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9999999999999 99999999 69998763 3344444 3788888888543
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=135.76 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 960 SGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|+. ...+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEE
Confidence 4699999999999999974 4699999999999999999999999998864 57899999985 467889999865
Q ss_pred e--cCcEEEEEcC
Q 046656 1036 K--RGGQEIYVGP 1046 (1326)
Q Consensus 1036 ~--~gg~~~~~G~ 1046 (1326)
. +|...++..+
T Consensus 140 ~~~~g~s~~~~~~ 152 (173)
T 3kta_B 140 SMRDGVSKVVSLS 152 (173)
T ss_dssp EEETTEEEEEECC
T ss_pred EecCCEEEEEEEE
Confidence 3 4433344333
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-13 Score=173.88 Aligned_cols=156 Identities=12% Similarity=0.031 Sum_probs=100.9
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
..+++|+++. ++|++++|+|||||||||||++|+|..... . . |..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q-~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y-I------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T-T------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h-c------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999974211 0 1 211111 1134555555 34455555
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
|++..+ ...+
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 554321 1135
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHH-HHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHI-VNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|+|+++ ++.+...+.+|+++|||||++|+|+.....+ +..++.+.+.. +.+++.++|..+ ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444456889999999999999999877775 56666665422 455555777764 4568888877788887
Q ss_pred EEEc
Q 046656 376 VYQG 379 (1326)
Q Consensus 376 v~~G 379 (1326)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=147.37 Aligned_cols=153 Identities=13% Similarity=0.144 Sum_probs=98.5
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 225 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 225 (1326)
-+++|++++|+||||||||||++.+++.+. .|++ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999999764 3554 3344321 1345788876543 1 1111 000
Q ss_pred ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHH
Q 046656 226 QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT 305 (1326)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 305 (1326)
...+ ...+ ....+.+++.+++.+..+ ..+..+|+||++++
T Consensus 88 ~~~g-----------------~~~~-----------------~~~~~~~~~~l~l~~~~~-----~~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALG-----------------AHLS-----------------AEERQAVADGLLIQPLIG-----SLPNIMAPEWFDGL- 127 (279)
T ss_dssp HHHH-----------------TTSC-----------------HHHHHHHHHHEEECCCTT-----SCCCTTSHHHHHHH-
T ss_pred HHHH-----------------hhcC-----------------hhhhhhccCceEEeecCC-----CCcccCCHHHHHHH-
Confidence 0000 0000 011244567777765543 34567999998876
Q ss_pred HHHHhhcCCccceEecCCC--CCCHHHH---HHHHHHHHHHHHhcCCEEEEEEecChhh
Q 046656 306 TGEMMVGPALALFMDEISN--GLDSSTT---FHIVNSLRQNIHILNGTAVISLLQPAPE 359 (1326)
Q Consensus 306 ia~al~~~~~illLDEpts--gLD~~t~---~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 359 (1326)
++++.+|+++++||||+ ++|.... .++++.|+++++..+ ++|+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g-~tvi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcC-CEEEEEecCCCc
Confidence 57788999999999999 9998544 788888888876544 455557776644
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-14 Score=152.39 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=85.6
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH----HHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV----YESLLY 918 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv----~E~l~f 918 (1326)
-..++|++++|+||||||||||+++|+|..++....|.|.+++.+... ..++.++|++|++..++.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 356899999999999999999999999976532368999999876543 223457899987543333332 121111
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~ 998 (1326)
.+ ... +.| +++ +.+++..++++||| ||+.++.
T Consensus 90 ~~-------------------------------~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 FG-------------------------------NYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp TT-------------------------------EEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred Hh-------------------------------ccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 00 000 112 111 34455668999999 9999999
Q ss_pred HHHHHHHHHHhcCCEEEEEecCCc
Q 046656 999 IVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 999 ~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
.+.+.+. ++.||++++|+++
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9998876 5899999999865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-13 Score=162.63 Aligned_cols=175 Identities=16% Similarity=0.140 Sum_probs=111.2
Q ss_pred eEeeecceeEEeCCeE--EEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCH
Q 046656 835 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTV 912 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv 912 (1326)
.+ |+++|+++++|++ +||+|+||||||||+++|+|..- .|.- +... .....++.++|++|++.+++.+||
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCccccccch
Confidence 34 9999999999999 99999999999999999999742 2211 1110 111224578999999888888999
Q ss_pred HHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHc-CCc----cccccc----cc--CCCCCCCCHHHHHHHHHHHHHhhC
Q 046656 913 YESLLYSAWLRLRTEVD--SETRKMFIEEIMELV-ELK----PLRQSL----VG--LPGESGLSTEQRKRLTIAVELVAN 979 (1326)
Q Consensus 913 ~E~l~f~~~lr~~~~~~--~~~~~~~v~~~l~~l-~l~----~~~~~~----vg--~~~~~~LSgGqrqrl~ia~aL~~~ 979 (1326)
.|++.|+.......... .+......++.|+.. ++. ...|.. +. .+...+|+..+ +.|+++|..+
T Consensus 100 ~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~ 176 (427)
T 2qag_B 100 VSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSK 176 (427)
T ss_dssp EEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSC
T ss_pred hhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhC
Confidence 99987653211000000 001123344555554 433 112222 11 12223577776 7899999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEecC
Q 046656 980 PSIIFMDEPTSGLDARAAAIVMRTVKN-TVETGRTVVCTIHQ 1020 (1326)
Q Consensus 980 p~illLDEPtsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1020 (1326)
++||++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 177 ~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 177 VNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999888888888887 76779999988764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=142.12 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=98.5
Q ss_pred eeecce-eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
.|+++. +.+++|++++|+|+||||||||++.|++ ..+ .+.++++... . .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCH-HH
Confidence 566666 4799999999999999999999999998 221 2333443221 1 011 11
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHHHHHHhhC-CcEEEEeCCCCCC
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 992 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgG--qrqrl~ia~aL~~~-p~illLDEPtsgL 992 (1326)
+.- ..+ ....+. +++++.+.+ . ..+++ +++++..+++++.+ |+++++||||+.+
T Consensus 62 ~~~--~~~-~~~~~~-------~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAE-TRGLNP-------EEALSRFIL--------F-----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHH-TTTCCH-------HHHHHHEEE--------E-----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHH-hcCCCh-------HHHhhcEEE--------E-----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 000 011111 122222211 1 13333 46789999999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhc-CCEEEEEecCCc------------HHHHHHhceeeEEecC
Q 046656 993 DARA--------AAIVMRTVKNTVET-GRTVVCTIHQPS------------IDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 993 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~------------~~~~~~~D~v~~l~~g 1038 (1326)
|+.. ...+++.|++++++ |+|||+++|... ..+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9732 24466667887654 999999999754 1356779999999864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-13 Score=156.42 Aligned_cols=131 Identities=19% Similarity=0.266 Sum_probs=97.6
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCee-EEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-SGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
+|++++ +++|++++|+||||||||||+++|+|... +. +|+|.+.|.+... ..++.++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 677776 79999999999999999999999999764 33 6899777655532 2345567887741
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+++.. ..+ +.+|+++|..+|++|++|||+ |..
T Consensus 191 ----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 11110 125 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 996 AAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 996 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
+.. .+++. +..|.+|++|+|+.+ ..+.+||++.|..
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 258 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTSC
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHhcC
Confidence 643 33443 356899999999965 6678899988753
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-13 Score=159.87 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=89.1
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCC
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDV 208 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~ 208 (1326)
+++.+++.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++.
T Consensus 16 ~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~ 85 (418)
T 2qag_C 16 NLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGG 85 (418)
T ss_dssp CCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC-----
T ss_pred ecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCC
Confidence 4445556677999999998 99999999999999999999764311 2222222111 111246899999888
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
.++.+||.||+.|+...... ..+ ..+.+++ +
T Consensus 86 ~~~~Ltv~Dt~g~~~~~~~~-~~~-----------------------------------~~i~~~i-~------------ 116 (418)
T 2qag_C 86 VQLLLTIVDTPGFGDAVDNS-NCW-----------------------------------QPVIDYI-D------------ 116 (418)
T ss_dssp -CEEEEEEECC------------C-----------------------------------HHHHHHH-H------------
T ss_pred cccceeeeechhhhhhccch-hhH-----------------------------------HHHHHHH-H------------
Confidence 88889999999875431100 000 0001111 0
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCc---cceEecCC-CCCCHHHHHHHHHHHHHHHHhcCCEEEEEEec
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPAL---ALFMDEIS-NGLDSSTTFHIVNSLRQNIHILNGTAVISLLQ 355 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~---illLDEpt-sgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q 355 (1326)
..++++.++|++||++++.+|+ ++++|||| .|||+... .+ ++.+. .+.++|+++++
T Consensus 117 -----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~---lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 117 -----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EF---MKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp -----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HH---HHHHT--TTSEEEEEEES
T ss_pred -----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HH---HHHHh--ccCcEEEEEEc
Confidence 1356677889999999999999 99999999 69998763 33 33332 23455554443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-13 Score=148.54 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=97.9
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH----HHHHH
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV----RETLA 220 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 220 (1326)
-..++|++++|+||||||||||+++|+|..+|+ ...|.|.+.+.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 457899999999999999999999999998763 3589999998765432 23467899997554444333 22221
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
+.. + +.|-.
T Consensus 89 ~~~------------------------------------------------------------------~-----~yg~~ 97 (219)
T 1s96_A 89 VFG------------------------------------------------------------------N-----YYGTS 97 (219)
T ss_dssp ETT------------------------------------------------------------------E-----EEEEE
T ss_pred HHh------------------------------------------------------------------c-----cCCCC
Confidence 110 0 01111
Q ss_pred hHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcC
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 380 (1326)
+++ .+.++..++++||| ||+.++.++.+.+. .+.+|+.++|+..++.+ |+ +.+| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 221 23334446999999 99999999988765 35677777888776655 43 7777 678
Q ss_pred hhhHHHHH
Q 046656 381 CELVLDFF 388 (1326)
Q Consensus 381 ~~~~~~~F 388 (1326)
.+++...+
T Consensus 155 ~e~i~~rl 162 (219)
T 1s96_A 155 EEVIAKRM 162 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-13 Score=155.23 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=43.6
Q ss_pred HHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCC
Q 046656 305 TTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDG 373 (1326)
Q Consensus 305 sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 373 (1326)
+||++|..+|+++++|||+ |..+...+.+ .+. . +.++++++|..+.. +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~-G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-T-GHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-T-TCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-c-CCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 7666444333 333 3 44466677776655 889999998665
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-14 Score=153.68 Aligned_cols=141 Identities=13% Similarity=0.020 Sum_probs=89.3
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHHHHh
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWL 922 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~l 922 (1326)
.+++|++++|+|+||||||||+++|+|.. ..|.|.++|.+.... ...+.++|++|+.. +..|+.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 36799999999999999999999999973 258899998654211 11234577777543 456888988765432
Q ss_pred hccCCCCHHHHHHHHHHHHHHcCCcccc--cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 046656 923 RLRTEVDSETRKMFIEEIMELVELKPLR--QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1000 (1326)
Q Consensus 923 r~~~~~~~~~~~~~v~~~l~~l~l~~~~--~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i 1000 (1326)
....... ..++.+++..++..+. +..+ ..+|+|++||++++|++.++|+++ +|+.....+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~-----~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTALARPL-----HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTTCSCE-----EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhcCCCe-----EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 1100000 0001111111111111 1111 248999999999999999999876 688777777
Q ss_pred HHHHHHHH
Q 046656 1001 MRTVKNTV 1008 (1326)
Q Consensus 1001 ~~~l~~~~ 1008 (1326)
.+.++.+.
T Consensus 141 ~~~~~~l~ 148 (191)
T 1zp6_A 141 HSQFADLG 148 (191)
T ss_dssp HHHTTCCG
T ss_pred HHHHhccC
Confidence 77665543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.1e-15 Score=156.53 Aligned_cols=167 Identities=15% Similarity=0.152 Sum_probs=107.9
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTE 927 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~ 927 (1326)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...|+++|.....+..++++++.+.+......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA- 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc-
Confidence 689999999999999999999972 257889988654221 13467777654444567888877643221100
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccC---CCCCCC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHH
Q 046656 928 VDSETRKMFIEEIMELVELKPLRQSLVGL---PGESGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARA 996 (1326)
Q Consensus 928 ~~~~~~~~~v~~~l~~l~l~~~~~~~vg~---~~~~~L--SgGqrqrl~ia~------aL~~~p~illLDEPtsgLD~~~ 996 (1326)
+...+.+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+..
T Consensus 73 -----------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 73 -----------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp -----------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred -----------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 000001110000 000123 778877887777 8899998888884 899988
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecC-CcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 997 AAIVMRTVKNTVETGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 997 ~~~i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
... ++.++.+.+.+.+||.++|+ ++ ++.+.+|+|+ +.|+++..|+..
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 877 88888776567899999998 76 5778899998 468999988764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-12 Score=153.62 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=99.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEee-cCCCCCCCCCHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFTRISGYCE-QNDIHSPLVTVYE 914 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~-Q~~~~~~~~Tv~E 914 (1326)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|...-. ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998764 48999999854211 12456678887 54321
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~ 994 (1326)
+++++..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012223356667777778899999999985
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 995 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 995 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
..+.+.|+.+.....|++.++|..+ ....+||+..|..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2345666666544457899999975 56788999999875
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-13 Score=140.51 Aligned_cols=79 Identities=19% Similarity=0.074 Sum_probs=66.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
.+.+++++|+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv 91 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSC
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCc
Confidence 456899999999999999999999999999999999999 76 899999998874221111 2899997777 8999
Q ss_pred HHHHHh
Q 046656 216 RETLAF 221 (1326)
Q Consensus 216 ~E~l~f 221 (1326)
.|++.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=129.50 Aligned_cols=89 Identities=21% Similarity=0.262 Sum_probs=68.3
Q ss_pred cccCCChhhhHHHHHHHHhh----cCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 292 MVRGISGGQKKRLTTGEMMV----GPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~----~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.++++.. +++ +++++|+. .+.+.+|++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~~-~~~~~ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLRD-VMMANADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSCH-HHHTTCSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEecH-HHHHhCCEE
Confidence 45679999999999999996 56799999999999999999999999998743 344 44456654 577899999
Q ss_pred EEe--cCCeE-EEEcChhhH
Q 046656 368 ILL--SDGQI-VYQGPCELV 384 (1326)
Q Consensus 368 ilL--~~G~i-v~~G~~~~~ 384 (1326)
+.+ .+|.. +...+.++.
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEEETTEEEEEECCHHHH
T ss_pred EEEEecCCEEEEEEEEcHHH
Confidence 866 46643 233444433
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-14 Score=153.03 Aligned_cols=169 Identities=11% Similarity=0.065 Sum_probs=107.5
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhccCC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVG 229 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 229 (1326)
|++++|+||||||||||++.|++. . +|.+.++|.++... ...++++|.+...+..|+++++.+.++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999983 2 68899998665332 23467777654445568888887654321000
Q ss_pred ccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC---ccccCC--ChhhhHHH
Q 046656 230 SRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD---EMVRGI--SGGQKKRL 304 (1326)
Q Consensus 230 ~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkqRv 304 (1326)
+-....+...+. +..+.+ |+|+++|+
T Consensus 73 -------------------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 73 -------------------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp -------------------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred -------------------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 000000000000 011224 89999998
Q ss_pred HHHH------HhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC-hhhHHhhCCeEEEecCCeEEE
Q 046656 305 TTGE------MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP-APETYDLFDDIILLSDGQIVY 377 (1326)
Q Consensus 305 sia~------al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~-~~~~~~~~D~vilL~~G~iv~ 377 (1326)
.++. ++..+++...+|+ +||+..... ++.++.+.. .+.+++..+|. .+++.+.+|+|+ ++|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~--~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI--DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC--CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC--CccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8777 8888988888884 899988777 777776532 23445555666 778999999998 9999999
Q ss_pred EcChhhH
Q 046656 378 QGPCELV 384 (1326)
Q Consensus 378 ~G~~~~~ 384 (1326)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-14 Score=171.99 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=96.1
Q ss_pred eecceeEEEeC--ceEEEEecCCCCChhHHHHHHhcccCCCCcee----eEEEEC----CccCCCCCcc--ceEEEEccC
Q 046656 139 ILKDVSGIIKP--GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVS----GRVTYN----GHDMNEFVPQ--RTAAYISQH 206 (1326)
Q Consensus 139 iL~~vs~~i~~--G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~----G~~~~~~~~~--~~~~yv~Q~ 206 (1326)
+.+.|+..+++ |+.++|+||||||||||+++|+|.++++ + |++.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45789999999 9999999999999999999999999886 6 666553 2211 00000 112222221
Q ss_pred CCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc
Q 046656 207 DVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT 286 (1326)
Q Consensus 207 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 286 (1326)
.. ....|++||+.|. + ....+
T Consensus 233 ~~-~~~~t~~~nl~~~--------------------------------------------------------~-~~~~~- 253 (365)
T 1lw7_A 233 YI-DYAVRHSHKIAFI--------------------------------------------------------D-TDFIT- 253 (365)
T ss_dssp HH-HHHHHHCSSEEEE--------------------------------------------------------S-SCHHH-
T ss_pred HH-HHHHhccCCEEEE--------------------------------------------------------e-CCchH-
Confidence 10 0001111111110 0 00000
Q ss_pred cccCccccCCChhhhHHHHHHHHhh-cCCccceEec---CC------CCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecC
Q 046656 287 LVGDEMVRGISGGQKKRLTTGEMMV-GPALALFMDE---IS------NGLDSSTTFHIVNSLRQNIHILNGTAVISLLQP 356 (1326)
Q Consensus 287 ~vg~~~~~~LSGGqkqRvsia~al~-~~~~illLDE---pt------sgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~ 356 (1326)
.....+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.+ ++.+.|+
T Consensus 254 ----~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~-ililde~ 328 (365)
T 1lw7_A 254 ----TQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVP-YIEIESP 328 (365)
T ss_dssp ----HHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCC-CEEEECS
T ss_pred ----HHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCC-EEEeCCC
Confidence 112235677788888887765 5899999999 65 5899999999999998875433344 4445666
Q ss_pred hhhHHhhCCeEEEec
Q 046656 357 APETYDLFDDIILLS 371 (1326)
Q Consensus 357 ~~~~~~~~D~vilL~ 371 (1326)
. +..+++|.+.+++
T Consensus 329 ~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 S-YLDRYNQVKAVIE 342 (365)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHH
Confidence 3 5556666665554
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-14 Score=168.99 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=98.9
Q ss_pred eeecceeEEeC--CeEEEEeccCCCChhhHHhhhcCCCCCCeeE----EEEEEc----CccCC--cccccceEEEeecCC
Q 046656 837 LLNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIS----GNITIS----GYPKK--QETFTRISGYCEQND 904 (1326)
Q Consensus 837 vL~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~----G~i~i~----g~~~~--~~~~~~~~gyv~Q~~ 904 (1326)
+.+.|++.|++ |++++|+|+||||||||+++|+|... +.. |+|.++ |.+.. ...+ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 35679999999 99999999999999999999999876 345 666553 21110 0001 1122222211
Q ss_pred CCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCCcEE
Q 046656 905 IHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV-ANPSII 983 (1326)
Q Consensus 905 ~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~-~~p~il 983 (1326)
..+ ..|+.||+.|. + .+..+..+ ..+|+|++|+..+++++. .+|+++
T Consensus 234 ~~~-~~t~~~nl~~~-------------------------~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDY-AVRHSHKIAFI-------------------------D-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHH-HHHHCSSEEEE-------------------------S-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHH-HHhccCCEEEE-------------------------e-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 000 01111111000 0 00001111 125677788888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 984 FMDE---PT------SGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 984 lLDE---Pt------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
|||| |+ +++|...+..+.+.|+++.+ .|.+||+++|. + +....+|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 68999999999999988754 48999999975 3 4556677777665
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.5e-15 Score=171.16 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=100.6
Q ss_pred eEEEEeccCCCChhhHHhhhcCCCCC------CeeEEEEEEcCccCCcc------------------cccceEEEe---e
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRKTG------GYISGNITISGYPKKQE------------------TFTRISGYC---E 901 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gyv---~ 901 (1326)
++++|+|+||||||||++.|.|...+ .+..|+|.|||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999987521 13579999999775321 233445666 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hh-hccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 046656 902 QNDIHSPLVTVYESLLYSA--WL-RLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVA 978 (1326)
Q Consensus 902 Q~~~~~~~~Tv~E~l~f~~--~l-r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~ 978 (1326)
|+....+..++.|+..++. .+ +.....+...+...++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 7665556677777664421 00 00000000000011222333344444444332 489999999998899999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 046656 979 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPS 1022 (1326)
Q Consensus 979 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1022 (1326)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67788888864 5899999999764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-12 Score=134.92 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=87.9
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEccCCCCCCCCCHHHHHHhhhh
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYISQHDVHIGEMTVRETLAFSAR 224 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 224 (1326)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +++||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 33 799999997653221 1234678887643 46789999877543
Q ss_pred hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHH
Q 046656 225 CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRL 304 (1326)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv 304 (1326)
....+..... + +.+++.++++..... +..+..+|+|++||+
T Consensus 78 ~~~~~~~~~~------------------~------------------~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYAKEGYFVI------------------L------------------DGVVRPDWLPAFTAL---ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHHHTSCEEE------------------E------------------CSCCCTTTTHHHHTT---CSCEEEEEEECCHHH
T ss_pred HHhccCCeEE------------------E------------------eccCcHHHHHHHHhc---CCCeEEEEecCCHHH
Confidence 2100000000 0 000000011111100 112346999999999
Q ss_pred HHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHH
Q 046656 305 TTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLR 339 (1326)
Q Consensus 305 sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~ 339 (1326)
.++|++..+|+++ +|+.....+.+.++
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 9999999999876 57776666655544
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.9e-11 Score=128.80 Aligned_cols=77 Identities=13% Similarity=-0.020 Sum_probs=56.7
Q ss_pred CChhh--hHHHHHHHHhhcC-CccceEecCCCCCCHHH--------HHHHHHHHHHHHHhcCCEEEEEEecChh------
Q 046656 296 ISGGQ--KKRLTTGEMMVGP-ALALFMDEISNGLDSST--------TFHIVNSLRQNIHILNGTAVISLLQPAP------ 358 (1326)
Q Consensus 296 LSGGq--kqRvsia~al~~~-~~illLDEptsgLD~~t--------~~~i~~~l~~~~~~~~~t~ii~i~q~~~------ 358 (1326)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.+++ .++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi-~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVI-VINQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEE-EEECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEE-EEeeEEEcCCCCc
Confidence 45554 5678888899875 99999999999999732 35566678887765555544 5666543
Q ss_pred -------hHHhhCCeEEEecCC
Q 046656 359 -------ETYDLFDDIILLSDG 373 (1326)
Q Consensus 359 -------~~~~~~D~vilL~~G 373 (1326)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 467889999999754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.17 E-value=9.7e-13 Score=142.46 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=52.0
Q ss_pred HHHHcCCcccccccccCccccCCChhhhHH-HHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHH
Q 046656 274 YLKVLGLDVCADTLVGDEMVRGISGGQKKR-LTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIH 343 (1326)
Q Consensus 274 ~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR-vsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 343 (1326)
.++..++... .+++ +...+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.+...
T Consensus 132 ~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 4455565532 1232 234589999999 8899999999999999999999999999999999988653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.1e-14 Score=155.92 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=97.8
Q ss_pred CCeEEEEeccCCCChhhHHhhhc---CCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHh-
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWL- 922 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~l- 922 (1326)
++++++|+|+||||||||+++|+ |... +..|+|.++|.+... ...+.+++++|+..+.+..++.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9765 557888877754321 1223345567777778888999998764310
Q ss_pred -h---ccCCCCHHHHHHHHHHHHHH--cC------------CcccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCcEE
Q 046656 923 -R---LRTEVDSETRKMFIEEIMEL--VE------------LKPLRQSLVGLPGESGLSTEQRKRLTIAVEL-VANPSII 983 (1326)
Q Consensus 923 -r---~~~~~~~~~~~~~v~~~l~~--l~------------l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL-~~~p~il 983 (1326)
. .....+... ..++.+.+. ++ +..+.++.+ ..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCccc
Confidence 0 000111111 112222211 12 112222322 24888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhcC
Q 046656 984 FMD----EPTSGLDARAAAIVMRTVKNTVETG 1011 (1326)
Q Consensus 984 lLD----EPtsgLD~~~~~~i~~~l~~~~~~g 1011 (1326)
+|| |||++||..+...+.+.++++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999876653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.8e-12 Score=147.54 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=52.6
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-ccceEEEEc-cCC
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-PQRTAAYIS-QHD 207 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~d 207 (1326)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|..--... .++.++|++ |++
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC---
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcc
Confidence 449999999999999999999999999999999999987 899999985311111 345678888 543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=8e-11 Score=139.27 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=67.3
Q ss_pred CCCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhcee
Q 046656 960 SGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDEL 1032 (1326)
Q Consensus 960 ~~LSgGqrqrl------~ia~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1032 (1326)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 46999999988 567889999 99999999999999999999999999864 3579999999975 56789999
Q ss_pred eEEecCc
Q 046656 1033 FLMKRGG 1039 (1326)
Q Consensus 1033 ~~l~~gg 1039 (1326)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998544
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-11 Score=133.92 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=85.1
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCC--CCC---CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTG---GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
+-+++|++++|+||||||||||++.|++. ..+ +...|.+++++.... ...+...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 56999999999999999999999999983 321 112567777664310 0000000
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH-HHHHHHHHh--hCCcEEEEeCCCCCCCH
Q 046656 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSGLDA 994 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq-rl~ia~aL~--~~p~illLDEPtsgLD~ 994 (1326)
....+ .... +++++.+.+ . ...+..+.. .+.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVAY-------A-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEEE-------E-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHc----CCCH-------HHHhhCeEE-------E-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00000 1111 112221100 0 124555433 233344444 47999999999999997
Q ss_pred H-------H-----HHHHHHHHHHHHh-cCCEEEEEecCCcHHHH-------------------HHhceeeEEecC
Q 046656 995 R-------A-----AAIVMRTVKNTVE-TGRTVVCTIHQPSIDIF-------------------EAFDELFLMKRG 1038 (1326)
Q Consensus 995 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~-------------------~~~D~v~~l~~g 1038 (1326)
. + ...+++.|+++++ .|+|||+++|... +.. ..+|.+++|.++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 3445666666654 4999999999643 221 168999999864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.15 E-value=9.8e-13 Score=146.63 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=96.1
Q ss_pred CceEEEEecCCCCChhHHHHHHh---cccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALA---GQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC 225 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 225 (1326)
++++++|+||||||||||+++|+ |...++ .|+|.++|.+... ...+.+.++.|+..+++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 988765 7888887754321 0123345567777778888999999874321
Q ss_pred --------ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCC
Q 046656 226 --------QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGIS 297 (1326)
Q Consensus 226 --------~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 297 (1326)
.+..... .+. .....-..++..+ +.+ .. .+..+ +. +.++.+..||
T Consensus 102 ~~~~~~il~g~~~~~---~~~--~~l~~~~~~~~vi--~L~---~~-------~~~~l-----~r-----~~~r~~~~lS 154 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL---GQA--EALDKICEVDLVI--SLN---IP-------FETLK-----DR-----LSRRWIHPPS 154 (246)
T ss_dssp CTTSCEEEESCCCSH---HHH--HHHHTTCCCCEEE--EEE---CC-------HHHHH-----HH-----HHTEEEETTT
T ss_pred cCCCeEEEECCCCCH---HHH--HHHHhhcCCCEEE--EEE---CC-------HHHHH-----HH-----HHcCCCcCCC
Confidence 1110000 000 0000000011000 000 00 00000 01 1123455699
Q ss_pred hhhhHHHHHHHHh-hcCCccceEe----cCCCCCCHHHHHHHHHHHHHHHH
Q 046656 298 GGQKKRLTTGEMM-VGPALALFMD----EISNGLDSSTTFHIVNSLRQNIH 343 (1326)
Q Consensus 298 GGqkqRvsia~al-~~~~~illLD----EptsgLD~~t~~~i~~~l~~~~~ 343 (1326)
| || +++ +.+|++++|| |||+|||..+...+.+.++++..
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9 66 677 9999999999 99999999999999999887644
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-12 Score=148.83 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=104.4
Q ss_pred cccceeecceeEEEeCceE--EEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCC
Q 046656 134 KKHLTILKDVSGIIKPGRM--TLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIG 211 (1326)
Q Consensus 134 ~~~~~iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 211 (1326)
++..+ |+++|+.+++|++ ++|+||||||||||+++|+|..- .|...... .....++.++|++|++.+++
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~---~~~~~~~~i~~v~Q~~~l~~ 95 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHT---QPGVQLQSNTYDLQESNVRL 95 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C---CSSCEEEEEEEEEEC--CEE
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCC---CccceEeeEEEEeecCcccc
Confidence 34455 9999999999999 99999999999999999999841 23211100 01112357899999988888
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc-CCcc----cccc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL-GLDV----CADT 286 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt 286 (1326)
.+||.||+.|+..... ..+... +. .......+.+|... ++.. ..|+
T Consensus 96 ~ltv~D~~~~g~~~~~---------~~~~~~----------i~----------~~i~~q~~~~L~e~~~i~r~l~~~~d~ 146 (427)
T 2qag_B 96 KLTIVSTVGFGDQINK---------EDSYKP----------IV----------EFIDAQFEAYLQEELKIRRVLHTYHDS 146 (427)
T ss_dssp EEEEEEEECCCC-CCH---------HHHSHH----------HH----------HHHHHHHHHHHHHC--CCCCCCCSCC-
T ss_pred ccchhhhhhhhhcccc---------chhhhH----------HH----------HHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 9999999987643110 000000 00 00111223334433 4431 1222
Q ss_pred c----cc--CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Q 046656 287 L----VG--DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVIS 352 (1326)
Q Consensus 287 ~----vg--~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~ 352 (1326)
. +. .+...+|+-.+ +.++++|..+++|+++|||+..|.+.....+.+.+++.... .+..|+.
T Consensus 147 rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~ 214 (427)
T 2qag_B 147 RIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQ 214 (427)
T ss_dssp -CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCC
T ss_pred cccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEe
Confidence 2 11 11123566666 78999999999999999999999998888888888863222 3444443
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.13 E-value=5e-13 Score=139.75 Aligned_cols=112 Identities=20% Similarity=0.126 Sum_probs=70.9
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------cc-ceEE----EEccCCCCCCCCCHHHHH
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQ-RTAA----YISQHDVHIGEMTVRETL 219 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 219 (1326)
++++|+|+||||||||++.|+|.+++.....|.|.++|.++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875333699999998854432 12 2455 788876544 000
Q ss_pred HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChh
Q 046656 220 AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGG 299 (1326)
Q Consensus 220 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 299 (1326)
+ . .+. .+ ..+.+++. .|+ ..||.+++ +||||
T Consensus 77 -------~--~-----~~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-----EEE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-----HHH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-----hhh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 00 01222333 023 56899986 59999
Q ss_pred hhHHHHHHHHhhcCCccc
Q 046656 300 QKKRLTTGEMMVGPALAL 317 (1326)
Q Consensus 300 qkqRvsia~al~~~~~il 317 (1326)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999874
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.13 E-value=9.6e-12 Score=144.31 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=85.1
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEc-CccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS-GYPKKQETFTRISGYCEQNDIHSPLVTVYESL 916 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l 916 (1326)
+++++.. .+|++++|+|+||||||||+|+|+|.... +.+|+|.++ |.+.. ....+.+++++|+..+++..+++|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 3344442 37999999999999999999999997651 347999887 76543 2345678999999888888888883
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVEL 976 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL 976 (1326)
. + ...+.++..+.+.++++.+++.++.+.... ++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 134555556678889999999888877653 599 999999999875
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.1e-12 Score=151.05 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=98.3
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
-+++++++++|+.++|+|+|||||||||++|+|... .+.+++... ....+|++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999642 234443321 2234566665431 1111111110
Q ss_pred HHHHhhccCCCCHHHHH--HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 918 YSAWLRLRTEVDSETRK--MFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 918 f~~~lr~~~~~~~~~~~--~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+.........+.....+ ++++.++..+++. +..+ ..||+|++|++.+|++|+.+|.||++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~-----~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPL-----KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHH-----HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCH-----HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000011111000 0111222222332 1121 35999999999999999999999999 999987
Q ss_pred HHHHHHHHHHHH-HhcCCEEEEEecCCcHHHHHHhceee
Q 046656 996 AAAIVMRTVKNT-VETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 996 ~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
.+ ..++.+++. .+.|.+++.+|..-...+.++++.+.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 76 444444444 34577776655332334666666554
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-11 Score=147.92 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=101.9
Q ss_pred eecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------c--ccceEEEeecCCCCCC
Q 046656 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------T--FTRISGYCEQNDIHSP 908 (1326)
Q Consensus 838 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~gyv~Q~~~~~~ 908 (1326)
-+++|+++++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 358899999999999999999999999999999765 3468999987664321 1 2456899999988888
Q ss_pred CCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCC-cEEEEe
Q 046656 909 LVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV-ANP-SIIFMD 986 (1326)
Q Consensus 909 ~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~-~~p-~illLD 986 (1326)
..|+++++.+... + +.+ .+ +++..|+.+... .+-..-+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~-~---~~D------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-R---NID------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-T---TCS------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-c---CCC------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999987532 1 110 00 111122211110 12223457888888764 456 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEec
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIH 1019 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1019 (1326)
.||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 589886654 22344332 3889999999
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-11 Score=145.59 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=92.2
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
+|++++ +++|++++|+|||||||||||++|+|.+++. -+|+|.+.|.++. ...+..++||+|...
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~---------- 191 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV---------- 191 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec----------
Confidence 677776 7899999999999999999999999998752 1699977776553 233445677777410
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
|++ ...+
T Consensus 192 ------------------------------------------------------------g~~-----------~~~~-- 198 (372)
T 2ewv_A 192 ------------------------------------------------------------GED-----------TKSF-- 198 (372)
T ss_dssp ------------------------------------------------------------TTT-----------BSCS--
T ss_pred ------------------------------------------------------------CCC-----------HHHH--
Confidence 010 0123
Q ss_pred hhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 299 GQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 299 GqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
+.+|+++|..+|+++++|||+ |..+.... ++. +. . +..+++.+|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~~---l~~-~~-~-g~~vi~t~H~~-~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AE-T-GHLVFGTLHTN-TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHHH---HHH-HT-T-TCEEEECCCCC-SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHHH---HHH-Hh-c-CCEEEEEECcc-hHHHHHHHHHHhc
Confidence 468999999999999999999 77664443 333 22 2 44556666664 4778888887664
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-12 Score=130.38 Aligned_cols=78 Identities=22% Similarity=0.093 Sum_probs=64.9
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+.+++++|+++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .+++|+..++ .+||.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999977 4 4799999998764221111 3789988777 899999
Q ss_pred HHHH
Q 046656 915 SLLY 918 (1326)
Q Consensus 915 ~l~f 918 (1326)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.08 E-value=7.5e-11 Score=130.61 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=27.4
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999999999994
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.2e-13 Score=139.04 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=83.4
Q ss_pred eEEEEeccCCCChhhHHhhhcCCCCC-CeeEEEEEEcCccCCc------cccc-ceEE----EeecCCCCCCCCCHHHHH
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITISGYPKKQ------ETFT-RISG----YCEQNDIHSPLVTVYESL 916 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~------~~~~-~~~g----yv~Q~~~~~~~~Tv~E~l 916 (1326)
++++|+|+||||||||++.|+|...+ +...|.|.++|.++.. ..++ +.+| +++|+..++ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i---- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I---- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E----
Confidence 57999999999999999999997642 2337999999987321 2333 3466 788865543 0
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE-------EEeCC
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMEL-VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSII-------FMDEP 988 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~-l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~il-------lLDEP 988 (1326)
+. ...+ ....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 75 ------~~---~~~~-~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RR---VSEE-EGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EE---CCHH-HHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ec---CChh-hhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 10 0111 11134555555 43 24666664 59999999999999999998762 23454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhcCC
Q 046656 989 TSG---LDARAAAIVMRTVKNTVETGR 1012 (1326)
Q Consensus 989 tsg---LD~~~~~~i~~~l~~~~~~g~ 1012 (1326)
..+ +|......+.+.+.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 233344556666665555543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-11 Score=126.32 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=42.0
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcH
Q 046656 977 VANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSI 1023 (1326)
Q Consensus 977 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 1023 (1326)
+.+|++|+||||++ ++|+..+..+.+.+....++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999887789999999998753
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-11 Score=139.54 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=83.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhh--
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARC-- 225 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~-- 225 (1326)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++ .++++++.++..-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 46889999999999999999999999864 22 0 1234566699988775 4889999876311
Q ss_pred ----ccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccc------cccCccccC
Q 046656 226 ----QGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADT------LVGDEMVRG 295 (1326)
Q Consensus 226 ----~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~~~ 295 (1326)
++....++ .+ .....++.+.- ..+| .+ ......
T Consensus 92 l~~~~g~p~a~d-------------------~~---------------~l~~~l~~l~~--g~~t~~~~~v~~-p~y~~~ 134 (290)
T 1odf_A 92 LLQGRGLPGTHD-------------------MK---------------LLQEVLNTIFN--NNEHPDQDTVVL-PKYDKS 134 (290)
T ss_dssp GGSSSCSTTSBC-------------------HH---------------HHHHHHHHHTC--------CCEEEE-CCEETT
T ss_pred hhhhccCcchhH-------------------HH---------------HHHHHHHHhhc--cCccccCcceee-ccCccc
Confidence 11111111 00 11223344322 2111 11 134467
Q ss_pred CChhhhHHHHHH--HHhhcCCccceEecCCCCCCHHH
Q 046656 296 ISGGQKKRLTTG--EMMVGPALALFMDEISNGLDSST 330 (1326)
Q Consensus 296 LSGGqkqRvsia--~al~~~~~illLDEptsgLD~~t 330 (1326)
+||||+||+++| +++ +|+|+|+||+++++|+..
T Consensus 135 ~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 135 QFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 999999999997 555 899999999999999853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.7e-11 Score=120.51 Aligned_cols=44 Identities=9% Similarity=0.173 Sum_probs=36.7
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE-EEEEecCC
Q 046656 977 VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRT-VVCTIHQP 1021 (1326)
Q Consensus 977 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1021 (1326)
+.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6655588899999988877888 88899964
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-11 Score=141.84 Aligned_cols=122 Identities=19% Similarity=0.126 Sum_probs=79.7
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC-CCCceeeEEEEC-CccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD-SSLKVSGRVTYN-GHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35666664 4799999999999999999999999998 76 8999987 755432 2345789999998888999999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
|+ +. .+. ...+ .....+++++.+|+....|. ...++
T Consensus 280 e~---~l--~~l----------~~~e------------------------~~~~~~e~l~~~gl~~f~~~-----~~~~l 315 (358)
T 2rcn_A 280 EF---GL--WHL----------EPEQ------------------------ITQGFVEFHDYLGHCKYRDC-----KHDAD 315 (358)
T ss_dssp TC---CC--CCC----------CHHH------------------------HHHTSGGGGGGTTCSSSTTC-----CSSSC
T ss_pred Hh---hh--cCC----------CHHH------------------------HHHHHHHHHHHcCCchhcCC-----CcccC
Confidence 83 21 110 0000 01112345677787665553 45579
Q ss_pred ChhhhHHHHHHHHh
Q 046656 297 SGGQKKRLTTGEMM 310 (1326)
Q Consensus 297 SGGqkqRvsia~al 310 (1326)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999764
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-11 Score=142.34 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=95.2
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccce--EEEeecCCCCCCCCCHHHH
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TFTRI--SGYCEQNDIHSPLVTVYES 915 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gyv~Q~~~~~~~~Tv~E~ 915 (1326)
.++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+.+. +.+++|.....|..||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999765 3478999999876321 11223 4599999888899999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 046656 916 LLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 995 (1326)
Q Consensus 916 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~ 995 (1326)
+.++.... .+. -+++..|+.+..+. =.++.-.|++++..++.+++||.+| |.
T Consensus 204 l~~~~~~~--~d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t-~~--- 255 (328)
T 3e70_C 204 IQHAKARG--IDV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALA-GN--- 255 (328)
T ss_dssp HHHHHHHT--CSE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGG-TT---
T ss_pred HHHHHhcc--chh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHH-HH---
Confidence 98653210 000 01111222221111 1223334889999888888999555 43
Q ss_pred HHHHHHHHHHHHH-hcCCEEEEEecC
Q 046656 996 AAAIVMRTVKNTV-ETGRTVVCTIHQ 1020 (1326)
Q Consensus 996 ~~~~i~~~l~~~~-~~g~tvi~~~H~ 1020 (1326)
.+++.++.+. ..+.|+|++||.
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCc
Confidence 3445555554 348999999994
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=138.48 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 961 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
.||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+.|.++|+|||++ ...+.+|+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 59999999999999999 58999999999999999999999999999865588999999985 4677899999997
Q ss_pred c
Q 046656 1037 R 1037 (1326)
Q Consensus 1037 ~ 1037 (1326)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-11 Score=143.20 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=68.9
Q ss_pred ecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC------C---ccceEEEEccCCCCC
Q 046656 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF------V---PQRTAAYISQHDVHI 210 (1326)
Q Consensus 140 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 210 (1326)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999876 89999987765321 0 135689999998878
Q ss_pred CCCCHHHHHHhhh
Q 046656 211 GEMTVRETLAFSA 223 (1326)
Q Consensus 211 ~~lTV~E~l~f~~ 223 (1326)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999864
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-12 Score=151.53 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=109.2
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCC-------CccceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEF-------VPQRTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~ 208 (1326)
...+|+++|+.+++|++++|+||||||||||+++|+|.+.|. +|+|.+.|.+.... ..++.++|++|++.
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 346899999999999999999999999999999999999876 89999999776432 12456899999877
Q ss_pred CCCCC------------CHHHHHHhhhhhc--------cCCccchhhhHhHHHHHHhCC-----CCchhHHHHHHHhhhh
Q 046656 209 HIGEM------------TVRETLAFSARCQ--------GVGSRYDMLTELARREKEAGI-----KPDLFIDVFMKAAATE 263 (1326)
Q Consensus 209 ~~~~l------------TV~E~l~f~~~~~--------~~~~~~~~~~~~~~~~~~~~i-----~pd~~~~~~~~~~~~~ 263 (1326)
.++.. +++|.+.. .... .+|-... +. ..+..+++ .+.. .+..
T Consensus 118 ~~~~~~~~~~~l~G~tr~~~e~~~~-~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~-~~~~------- 184 (337)
T 2qm8_A 118 AFIRPSPSSGTLGGVAAKTRETMLL-CEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGA-GDEL------- 184 (337)
T ss_dssp EEEECCCCCSSHHHHHHHHHHHHHH-HHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC------------
T ss_pred cccccCcccccccchHHHHHHHHHH-HhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCC-cccH-------
Confidence 76532 23333311 0000 0110000 00 00011110 0000 0000
Q ss_pred hHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhc------CCccceEecCCCCCCHHHHHHHHHH
Q 046656 264 GQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVG------PALALFMDEISNGLDSSTTFHIVNS 337 (1326)
Q Consensus 264 ~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~------~~~illLDEptsgLD~~t~~~i~~~ 337 (1326)
+..+.....+...+.+. ..|. .....+|+|++|++..+.+++. .|++++ +|++|......+++.
T Consensus 185 -~~i~~~i~~~~~ivvlN-K~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 185 -QGIKKGIFELADMIAVN-KADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp ---CCTTHHHHCSEEEEE-CCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred -HHHHHHHhccccEEEEE-chhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 00000011111222221 1121 1124579999999999998887 577776 999999999999999
Q ss_pred HHHHH
Q 046656 338 LRQNI 342 (1326)
Q Consensus 338 l~~~~ 342 (1326)
+.+..
T Consensus 255 I~~~~ 259 (337)
T 2qm8_A 255 IEDHR 259 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-12 Score=152.31 Aligned_cols=165 Identities=13% Similarity=0.131 Sum_probs=105.0
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc-------cccceEEEeecCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE-------TFTRISGYCEQNDIHS 907 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~~~~~ 907 (1326)
+.+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 358999999999999999999999999999999999764 3468899988765321 2345689999987776
Q ss_pred CCC------------CHHHHHHHHH-------------------HhhccC-------CCC-HHHHHHHHHHHHHHcCCc-
Q 046656 908 PLV------------TVYESLLYSA-------------------WLRLRT-------EVD-SETRKMFIEEIMELVELK- 947 (1326)
Q Consensus 908 ~~~------------Tv~E~l~f~~-------------------~lr~~~-------~~~-~~~~~~~v~~~l~~l~l~- 947 (1326)
+.. +++|.+...- .+.... +.. ..........+++...+-
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 432 2333331100 000000 000 000000000111221111
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046656 948 -PLRQSLVGLPGESGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009 (1326)
Q Consensus 948 -~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1009 (1326)
+..|.. ....+|+|++|++..+++++. +|++++ ||++|......+++.|.+...
T Consensus 200 lNK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 112211 012479999999999999987 688887 999999999999999987653
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=7.6e-13 Score=153.12 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=95.9
Q ss_pred ceEEEEecCCCCChhHHHHHHhccc--------CCCCceeeEEEECCccCCCCCc------------------cceEEEE
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQL--------DSSLKVSGRVTYNGHDMNEFVP------------------QRTAAYI 203 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 203 (1326)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 444 8999999987654311 1234555
Q ss_pred ---ccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCC
Q 046656 204 ---SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGL 280 (1326)
Q Consensus 204 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 280 (1326)
+|+..++++.+|.||..++... .....+..... .......+.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~---------------------~~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEV---------------------LCQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHH---------------------HHHHEEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCcc---------------------ccCeEEECCEEEEEEH
Confidence 4655445566666666543110 00000000000 0000000111222233
Q ss_pred cccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH
Q 046656 281 DVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET 360 (1326)
Q Consensus 281 ~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 360 (1326)
.+..+.. ..+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+|+.++|...+.
T Consensus 133 ~~~~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~---~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 133 VHADEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN---ARAPVYTVTHGDIDL 192 (318)
T ss_dssp TTHHHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC---SSSCEEECCSSCCCG
T ss_pred HHHHHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC---CCCeEEEecccCCCH
Confidence 3322221 158999999998888888999887 998 67777777753 345555566654344
Q ss_pred HhhCC
Q 046656 361 YDLFD 365 (1326)
Q Consensus 361 ~~~~D 365 (1326)
..++|
T Consensus 193 ~~l~~ 197 (318)
T 1nij_A 193 GLLFN 197 (318)
T ss_dssp GGGSC
T ss_pred HHHhC
Confidence 33443
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.8e-11 Score=137.80 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=62.1
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---------cceEEEEccCCCCCCCCCHHH
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---------QRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.|++|...+.|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4689999999999999999999999999887 8999999988653321 123569999988889999999
Q ss_pred HHHhhh
Q 046656 218 TLAFSA 223 (1326)
Q Consensus 218 ~l~f~~ 223 (1326)
++.++.
T Consensus 203 ~l~~~~ 208 (328)
T 3e70_C 203 AIQHAK 208 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-11 Score=137.80 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=83.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHH---h
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAW---L 922 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~---l 922 (1326)
+++.+++|.|++|||||||.+.|.+.... .| .. ++.+.+|+|++.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------CC------CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46889999999999999999999986542 11 10 2345566999988764 78888877521 1
Q ss_pred hccCCCCHHHHHHHHHHHHHHcCCcc--c--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCCCHHH
Q 046656 923 RLRTEVDSETRKMFIEEIMELVELKP--L--RQSLVGLPGESGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDARA 996 (1326)
Q Consensus 923 r~~~~~~~~~~~~~v~~~l~~l~l~~--~--~~~~vg~~~~~~LSgGqrqrl~ia--~aL~~~p~illLDEPtsgLD~~~ 996 (1326)
....+.+.....+...+.++.+...- . ....+. .....+||||+||+.+| +++ +|+|||+|||++++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 11001111111233455666654320 0 000011 01246899999999997 555 999999999999999853
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-13 Score=165.50 Aligned_cols=177 Identities=11% Similarity=0.015 Sum_probs=105.0
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC-------
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS------- 907 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~------- 907 (1326)
..+++++++.+++|+.++|+||||||||||+++|+|..++ .+|.|.++|.+.-.......+++..|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3478999999999999999999999999999999998764 4799999986521111123445555443311
Q ss_pred ---------------CCCCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHHcCCcc---------cccccccCCCCCCC
Q 046656 908 ---------------PLVTVYESLLYSAWLRLRTE-VDSETRKMFIEEIMELVELKP---------LRQSLVGLPGESGL 962 (1326)
Q Consensus 908 ---------------~~~Tv~E~l~f~~~lr~~~~-~~~~~~~~~v~~~l~~l~l~~---------~~~~~vg~~~~~~L 962 (1326)
..++..|++.+...+..... ...-+ ...+.++++.+...+ ..+..+.. ...+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~H-a~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~--~~~~ 401 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLH-AGDINQMVYRLESEPLKVPRSMLQFLDIALVQ--TMWV 401 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEE-CSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEE--EEEE
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccc-cCCHHHHHHHHHhcccccHHHHHhhccEEEEE--EEEE
Confidence 23444444332221110000 00000 001233334333211 01110000 1247
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE--EecCCcHHHHHHh
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVC--TIHQPSIDIFEAF 1029 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~ 1029 (1326)
|+|||||.+++. + | |+|||+.+...+++.|.++...|+|+++ ++|+.+ ++...+
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 999999887752 1 7 9999998887777777776666889885 899765 444444
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-11 Score=147.78 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=90.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-------cceEEEE----
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-------QRTAAYI---- 203 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv---- 203 (1326)
....+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++....+ .+.+++.
T Consensus 154 ~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~ 228 (418)
T 1p9r_A 154 HNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARG 228 (418)
T ss_dssp HHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHH
T ss_pred HHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHH
Confidence 345578888 4 4899999999999999999999999999886 8999999887642111 1233444
Q ss_pred -----ccCCCC--CCC----CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHH
Q 046656 204 -----SQHDVH--IGE----MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTD 272 (1326)
Q Consensus 204 -----~Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~ 272 (1326)
.|++.. +++ .|+++++.++..-+..-... . .+ ......+
T Consensus 229 lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tl------h---------~~---------------~~~~~i~ 278 (418)
T 1p9r_A 229 LRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTL------H---------TN---------------TAVGAVT 278 (418)
T ss_dssp HHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEE------C---------CS---------------SSHHHHH
T ss_pred HHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCccccc------c---------hh---------------hHHHHHH
Confidence 377554 344 58888887753211000000 0 00 0000112
Q ss_pred HHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccce
Q 046656 273 YYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318 (1326)
Q Consensus 273 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~ill 318 (1326)
.|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 279 -rL~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 279 -RLRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp -HHHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred -HHHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 25566776432 234699999999 9999999999865
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=128.59 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCccc-------ccccccC----ccccCCChhhhHHH------HHHHHhhcC-CccceEecCCCCCCHHHH
Q 046656 270 LTDYYLKVLGLDVC-------ADTLVGD----EMVRGISGGQKKRL------TTGEMMVGP-ALALFMDEISNGLDSSTT 331 (1326)
Q Consensus 270 ~~~~~l~~lgL~~~-------~dt~vg~----~~~~~LSGGqkqRv------sia~al~~~-~~illLDEptsgLD~~t~ 331 (1326)
.++.+++.+++.+. .+..+.+ ..+..+|||||||+ ++|+++..+ |++++|||||+|||+..+
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34556777777651 1122222 34568999999988 557889999 999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEec
Q 046656 332 FHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLS 371 (1326)
Q Consensus 332 ~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 371 (1326)
..+.+.|+++. .+++ |++++|.. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~--~~~~-vi~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVK--SIPQ-MIIITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCC--SCSE-EEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhc--cCCe-EEEEEChH-HHHhhCCEEEEEE
Confidence 99999998853 2345 45566765 4788999999996
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-11 Score=145.34 Aligned_cols=170 Identities=15% Similarity=0.125 Sum_probs=100.0
Q ss_pred ecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHH
Q 046656 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETL 219 (1326)
Q Consensus 140 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 219 (1326)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+... ..+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~--p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLS--PNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSC--CEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceec--ceeeEEEecCc--ceEEEEecc
Confidence 379999999999999999999999999999999743 23444433322 24566666531 112222221
Q ss_pred Hh---hhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 220 AF---SARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 220 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
-+ .....+.+. ...+.. ..++.++..+++. ++....+
T Consensus 214 Gli~~a~~~~~L~~------~fl~~~--------------------------era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------EFLRHI--------------------------ARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------HHHHHH--------------------------TSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------HHHHHH--------------------------HHHHhhhEEeCCc--------cCCHHHH
Confidence 11 000000000 000000 0011122223332 2345579
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
|+||+||+.++++|...|.++++ +++|...+ ..++.+++.....+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999776 55555555444334455554444445555555544
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-10 Score=133.27 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=87.4
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhh--cCCCCC---CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTG---GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLL 917 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L--~g~~~~---~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~ 917 (1326)
+-|++|++++|+||||||||||++.| .+..+. +...+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 56999999999999999999999954 454431 1224567777653210 0 0010
Q ss_pred -HHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH-HHHHHHHHHHHHh--hCCcEEEEeCCCCCCC
Q 046656 918 -YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 993 (1326)
Q Consensus 918 -f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSg-Gqrqrl~ia~aL~--~~p~illLDEPtsgLD 993 (1326)
....+ .+.. +++++.+- +.. ..+. .+.+.+.-+.+++ .+|+++++||||+.+|
T Consensus 231 ~~a~~~----gl~~-------~~vleni~--------~~~----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRF----GLDP-------DDALNNVA--------YAR----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHT----TCCH-------HHHHHTEE--------EEE----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHc----CCCh-------HhHhhcEE--------Eec----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 00000 1111 11222111 110 1222 2344444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHHhc-CCEEEEEecCCc------------------HHHHHHhceeeEEecC
Q 046656 994 ARAA------------AIVMRTVKNTVET-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 994 ~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~D~v~~l~~g 1038 (1326)
.... ..+++.|++++++ |+|||+|+|..+ ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 6533 5678888888754 999999999721 1234557888888764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-11 Score=136.09 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=80.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEE---cCccCCcc--ccc-ceEEEeecCCCCC-----CCCCHH
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI---SGYPKKQE--TFT-RISGYCEQNDIHS-----PLVTVY 913 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gyv~Q~~~~~-----~~~Tv~ 913 (1326)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|.+.... ... +.+||++|.+.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3468999999999999999999999 765 45899999 88765432 112 2479999998653 67899
Q ss_pred HHH--HHHH----HhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 046656 914 ESL--LYSA----WLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESGLSTEQRKRLTIAVE 975 (1326)
Q Consensus 914 E~l--~f~~----~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~LSgGqrqrl~ia~a 975 (1326)
|++ .|.. .++........+....++++++.++|.+ ..+.... .|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 888 4541 0111111111222345889999999986 5666553 489988999999874
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.89 E-value=8.1e-10 Score=129.72 Aligned_cols=163 Identities=15% Similarity=0.020 Sum_probs=85.3
Q ss_pred EEEeccCCCChhhHHhhhcC-CCCCCeeEEEEEEcCccCCcc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAG-RKTGGYISGNITISGYPKKQE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEV 928 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~ 928 (1326)
+.|.||||+|||||+++|++ ... +..|.+.++|.+.... ...+.+++++|.+.+..... + ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCc
Confidence 89999999999999999999 443 2468898888654321 12345678887654311100 0 0000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046656 929 DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008 (1326)
Q Consensus 929 ~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1008 (1326)
... .+.+.++.+....-.+... .||| +..+|+++++|||++ ||..++..+.+++.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1333333332111011111 2565 788999999999999 99999999999998754
Q ss_pred hcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCCCChhhHHHHHh
Q 046656 1009 ETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGSNSSDLISYLQ 1059 (1326)
Q Consensus 1009 ~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~~~~~~~~~~f~ 1059 (1326)
.++++|+++|+++.-.-...+| ...+.+.++. .+++.++..
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~--~~~~~~~l~ 203 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPS--DSEISTILS 203 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCC--HHHHHHHHH
T ss_pred -CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcC--HHHHHHHHH
Confidence 4789999999986311122233 2556666654 245555555
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-10 Score=131.01 Aligned_cols=123 Identities=12% Similarity=0.093 Sum_probs=77.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE---CCccCCCCCcc---ceEEEEccCCCCC-----CCCCHH
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY---NGHDMNEFVPQ---RTAAYISQHDVHI-----GEMTVR 216 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~---~~~~yv~Q~d~~~-----~~lTV~ 216 (1326)
.+|++++|+||||||||||+|+|+ ..++. +|+|.+ +|.+.+..... +.+||++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 88887 899999 89876543211 2579999987543 68899
Q ss_pred HHH--HhhhhhccCCccchhhhHh-HHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc-cccccccCcc
Q 046656 217 ETL--AFSARCQGVGSRYDMLTEL-ARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV-CADTLVGDEM 292 (1326)
Q Consensus 217 E~l--~f~~~~~~~~~~~~~~~~~-~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~ 292 (1326)
|++ .|+. .. +. |+- . +-.+. .+....++++++.+||+. ..+ ..
T Consensus 238 e~l~~~f~~-~~----------~~~c~~-~--~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~-----~~ 284 (302)
T 2yv5_A 238 REVRNYFRE-FL----------RYQCKY-P--DCTHT--------------NEPGCAVKEAVKNGEISCERYK-----SY 284 (302)
T ss_dssp GGGGGGCGG-GH----------HHHHHS-T--TCCSS--------------SCTTCHHHHHHHTTSSCHHHHH-----HH
T ss_pred HHHHHHHHH-HH----------HccCCC-C--CCCCC--------------CCCCCHHHHHHHcCCCCHHHHH-----HH
Confidence 888 4531 00 00 000 0 00000 001123567788899975 444 34
Q ss_pred ccCCChhhhHHHHHHH
Q 046656 293 VRGISGGQKKRLTTGE 308 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~ 308 (1326)
++.|||.++|++.|||
T Consensus 285 ~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 285 LKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5579998899999886
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-12 Score=151.17 Aligned_cols=136 Identities=15% Similarity=0.040 Sum_probs=90.7
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-------ccccceEEEee------
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-------ETFTRISGYCE------ 901 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~------ 901 (1326)
..+|+++ + .++|++++|+|||||||||||++|+|...+ .+|+|.+.|.++.. ....+.+|+.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4478888 5 489999999999999999999999997653 37899998876532 11223345544
Q ss_pred ---cCCCCC--CC----CCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHH
Q 046656 902 ---QNDIHS--PL----VTVYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLT 971 (1326)
Q Consensus 902 ---Q~~~~~--~~----~Tv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ 971 (1326)
|++... .. .|+.+++.++..-... .........+ +.+.|..+++.+.. .. ..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~-----~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS-----SSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH-----HHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH-----HHHHHHHHHH--
Confidence 776542 33 5889988775321100 0000000111 22356778887643 22 3599999999
Q ss_pred HHHHHhhCCcEEE
Q 046656 972 IAVELVANPSIIF 984 (1326)
Q Consensus 972 ia~aL~~~p~ill 984 (1326)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999876
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-11 Score=148.80 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=64.5
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHH
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRE 217 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 217 (1326)
.+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|++.|.+--.......++++.|........|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3567888899999999999999999999999999999987 8999999865222112345677777654334568888
Q ss_pred HHHhhhh
Q 046656 218 TLAFSAR 224 (1326)
Q Consensus 218 ~l~f~~~ 224 (1326)
.+.-+.+
T Consensus 325 ~l~~~LR 331 (511)
T 2oap_1 325 LLRAALR 331 (511)
T ss_dssp HHHTTGG
T ss_pred HHHHhhc
Confidence 8776555
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-11 Score=139.47 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=95.7
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCC-CCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHD-VHIG 211 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~ 211 (1326)
...+++++++.+++| ++|.||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|+. ...|
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 345899999999999 999999999999999999999763 789999987643221 23466777753 3445
Q ss_pred CCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCc
Q 046656 212 EMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDE 291 (1326)
Q Consensus 212 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 291 (1326)
.+++.|++.+....++. ... + .+.... +.
T Consensus 105 ~i~~~Deid~~~~~r~~--------------~~~--------------------------~------~~~~~~-----~~ 133 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSD--------------RET--------------------------G------ASVRVV-----NQ 133 (274)
T ss_dssp EEEEEETCTTTCC-------------------------------------------------------CTTHH-----HH
T ss_pred CeEeeehhhhhhcccCC--------------Ccc--------------------------h------HHHHHH-----HH
Confidence 55666665542211000 000 0 000001 12
Q ss_pred cccCCChhhhHHHHHHHHhhcCCccceEecCCC------------CCCHHHHHHHHHHH
Q 046656 292 MVRGISGGQKKRLTTGEMMVGPALALFMDEISN------------GLDSSTTFHIVNSL 338 (1326)
Q Consensus 292 ~~~~LSGGqkqRvsia~al~~~~~illLDEpts------------gLD~~t~~~i~~~l 338 (1326)
....|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 134 ~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 134 LLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 33469999999999999999999985 98864 23677777776644
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.2e-10 Score=117.53 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=35.5
Q ss_pred hcCCccceEecCCC-CCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhh
Q 046656 311 VGPALALFMDEISN-GLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE 359 (1326)
Q Consensus 311 ~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 359 (1326)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34889999999986 9999999988888877543 355666655555433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-11 Score=145.75 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=113.6
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcc------------cCCCCceeeEEEECCccCCC----CCccceE---EEEccC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQ------------LDSSLKVSGRVTYNGHDMNE----FVPQRTA---AYISQH 206 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~------------~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 206 (1326)
.+++|..++|+|+||+|||||+++|+|. ..|+ .|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999993 2344 8999999843311 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 207 DVHIGEMTVRETL--AFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 207 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
+-+....+..|.+ .|-+.++.. +.++..++..
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~--- 126 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF--- 126 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC---
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc---
Confidence 7777666665544 332221110 0001111111
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCC--ccceEecCCCCCCHHHHHHHHHHHHHH-HHhcCCEEEEEEecChhhHH
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPA--LALFMDEISNGLDSSTTFHIVNSLRQN-IHILNGTAVISLLQPAPETY 361 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~--~illLDEptsgLD~~t~~~i~~~l~~~-~~~~~~t~ii~i~q~~~~~~ 361 (1326)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. ++++++ .|...++.
T Consensus 127 ----~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~--~g~ti~--sh~~~~~~ 186 (392)
T 1ni3_A 127 ----DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR--GANTLE--MKAKKEEQ 186 (392)
T ss_dssp ----CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SSCSSS--HHHHHHHH
T ss_pred ----ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh--cCCccc--cccHHHHH
Confidence 123334467653 88 999999999999999999988888875 32 344443 78888999
Q ss_pred hhCCeEE-EecCC-eEEEEcChh
Q 046656 362 DLFDDII-LLSDG-QIVYQGPCE 382 (1326)
Q Consensus 362 ~~~D~vi-lL~~G-~iv~~G~~~ 382 (1326)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 888777654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-12 Score=138.67 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHH-HhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 306 TGE-MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 306 ia~-al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 7889999999999999999999999999888765421 1223 1 1 57899988875
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-09 Score=126.01 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=42.8
Q ss_pred cCCccceEecCCCCCCHHHH------------HHHHHHHHHHHHhcCCEEEEEEecCh-------------------hhH
Q 046656 312 GPALALFMDEISNGLDSSTT------------FHIVNSLRQNIHILNGTAVISLLQPA-------------------PET 360 (1326)
Q Consensus 312 ~~~~illLDEptsgLD~~t~------------~~i~~~l~~~~~~~~~t~ii~i~q~~-------------------~~~ 360 (1326)
.+|+++++|||++.+|+... .++++.|+++++..+.++ ++++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitV-Ilv~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAV-VVTNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEE-EEEEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEE-EEEEeecccCCccccccCCCccCCchhHH
Confidence 47999999999999996533 567888888887655554 4456651 224
Q ss_pred HhhCCeEEEecCCe
Q 046656 361 YDLFDDIILLSDGQ 374 (1326)
Q Consensus 361 ~~~~D~vilL~~G~ 374 (1326)
.+.+|.++.|+.|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999997653
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-11 Score=131.13 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=78.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCC-CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhh
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 923 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr 923 (1326)
.++|++++|+||||||||||+++|+|...+ |...|.|.+||....... .+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccccCC
Confidence 578999999999999999999999997642 123566666665432211 11110000000
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 046656 924 LRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIA-VELVANPSIIFMDEPTSGLDARAAAIVMR 1002 (1326)
Q Consensus 924 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia-~aL~~~p~illLDEPtsgLD~~~~~~i~~ 1002 (1326)
.+...+.. ...+.+..+...+..+..... ...++|+||+||++++ ++++.++.++++|||.. .
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~ 142 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R 142 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H
Confidence 00011111 122223322111111111111 1235799999999987 77777777777787731 1
Q ss_pred HHHHHHhcCCEEEEEecCCcHHHHHHhce
Q 046656 1003 TVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 1003 ~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
.+++. --.++++.+.....+.....|
T Consensus 143 ~l~~~---~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 143 DLTAI---WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGT---CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHh---cCEEEEEeCCHHHHHHHHHHH
Confidence 12222 236777877755444455555
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=8.4e-12 Score=146.91 Aligned_cols=170 Identities=10% Similarity=0.080 Sum_probs=112.8
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCC----------CCCeeEEEEEEcCccCCc----ccccceE---EEeecCCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYISGNITISGYPKKQ----ETFTRIS---GYCEQNDIH 906 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~~---gyv~Q~~~~ 906 (1326)
.+++|+.++|+|+||||||||+|+|+|.. +..+..|.+.++|..... ...++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 46789999999999999999999999932 113568999998843210 0011222 466677766
Q ss_pred CCCCCHHHHH--HHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--cE
Q 046656 907 SPLVTVYESL--LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP--SI 982 (1326)
Q Consensus 907 ~~~~Tv~E~l--~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p--~i 982 (1326)
.+..+..|.+ .|.+.++.. +.++..++..+ +..+ ..++++ .+| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~~i-----~~v~~~------------~dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DAEI-----IHVEGD------------VDPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TTCS-----SCCSSS------------SCHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--ccee-----eeeccc------------cCcchhh
Confidence 6666665554 343333210 11111111111 1111 124443 289 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCCcHHHHHHhceee-EEecCc-EEEEEcCCC
Q 046656 983 IFMDEPTSGLDARAAAIVMRTVKNT-VETGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-QEIYVGPLG 1048 (1326)
Q Consensus 983 llLDEPtsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~D~v~-~l~~gg-~~~~~G~~~ 1048 (1326)
+++|||+.++|+......++.+++. .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999988 66677864 99865 6788899999 8875 6 777777663
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-10 Score=125.19 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=28.2
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-10 Score=130.05 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=59.5
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC--CCCceeeEEEE---CCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD--SSLKVSGRVTY---NGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFS 222 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 222 (1326)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ..++.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999987 76 899999 8876432 123456788 777777889999999886
Q ss_pred hhh
Q 046656 223 ARC 225 (1326)
Q Consensus 223 ~~~ 225 (1326)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-08 Score=103.18 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.4
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45666 8999999999999999999999998864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-10 Score=133.77 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=73.0
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEE-------------------eCCeEEEEeccCCCChhhHHhhhcC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i-------------------~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
++++||++.+. ++++++++.+ ++|+++||+|+||||||||+++|+|
T Consensus 38 i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 38 LSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56677765542 3778888877 8999999999999999999999999
Q ss_pred CCCCCeeEEEEEE---cCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhh
Q 046656 871 RKTGGYISGNITI---SGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLR 923 (1326)
Q Consensus 871 ~~~~~~~~G~i~i---~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr 923 (1326)
.....+.+|+|.+ ||...... .++.+|++ |...+.+.+|+.+++.+...++
T Consensus 103 ~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 6541123789999 88775432 23456888 7777778889999988765543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-09 Score=124.57 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=66.4
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEE---cCccCCcc-cccce-EEEeecCCCCCC----CCCHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI---SGYPKKQE-TFTRI-SGYCEQNDIHSP----LVTVY 913 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gyv~Q~~~~~~----~~Tv~ 913 (1326)
+.+.+|++++|+|+||+|||||+|+|+|... +.+|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999866 45899998 77654321 12222 699999987655 6789
Q ss_pred HHHH--HHHH------hhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 914 ESLL--YSAW------LRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 914 E~l~--f~~~------lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
|++. |... ++........+....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 111111111122345889999999976443222 136777766
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-09 Score=122.75 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=51.1
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE---CCccCCCCCc---cceEEEEccCCC-----------
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY---NGHDMNEFVP---QRTAAYISQHDV----------- 208 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 208 (1326)
.+.+|++++|+|||||||||||++|+|...|. +|+|.+ +|.+++.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999987 999999 8987754321 135799999864
Q ss_pred -----CCCCCCHHHHHHhh
Q 046656 209 -----HIGEMTVRETLAFS 222 (1326)
Q Consensus 209 -----~~~~lTV~E~l~f~ 222 (1326)
++|++|+ ||+.|+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5888899 888875
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-10 Score=134.30 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=95.0
Q ss_pred cceeecceeEEEeCc-------eEEEEecCCCCChhHHHHHHhcccCCCC-ceeeEEEECCccCCCC---CccceEEEEc
Q 046656 136 HLTILKDVSGIIKPG-------RMTLLLGPPSSGKTTLLLALAGQLDSSL-KVSGRVTYNGHDMNEF---VPQRTAAYIS 204 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G-------~~~~ilGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~ 204 (1326)
...++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 345777888888776 8899999999999999999999984221 1366666655443211 1235689999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|.+.+.+ ++.|++.......+. +.. .... .....++..+..++|.. +
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~----~i~--~~~~------------------------~~~~~i~~~l~~~~li~-a 156 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQI----DIM--IGKG------------------------PSAKSIRIDIQPFTLVG-A 156 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-E
T ss_pred chhhcCH--HHHHHHHHHHHhccc----cee--eccC------------------------cccccccccCCCeEEEE-e
Confidence 9876554 788888543221110 000 0000 00011222233344433 4
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHIL 345 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~ 345 (1326)
++. +..||+|+|||+.++ .+||+.+..++.+.|++.+...
T Consensus 157 t~~-----~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 157 TTR-----SGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp ESC-----GGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred cCC-----cccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 433 346999999998544 7888888889999998876543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-08 Score=117.93 Aligned_cols=135 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred EEEecCCCCChhHHHHHHhc-ccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHHhhhhhccCCc
Q 046656 153 TLLLGPPSSGKTTLLLALAG-QLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGS 230 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 230 (1326)
++|.||||+|||||+++|+| ...+. .|++.++|.+...... ...++|++|.+.+..+.+ ..+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS----------DMGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh----------hcCCcc
Confidence 89999999999999999999 56665 7999999876543221 346778888654211100 000000
Q ss_pred cchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHh
Q 046656 231 RYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMM 310 (1326)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al 310 (1326)
+ . ......+.+.+..++.. .. .+|| +
T Consensus 106 ~-----~----------------------------~~~~~i~~~~~~~~~~~---------~~-~ls~-----------l 131 (354)
T 1sxj_E 106 R-----I----------------------------VIQELLKEVAQMEQVDF---------QD-SKDG-----------L 131 (354)
T ss_dssp H-----H----------------------------HHHHHHHHHTTTTC-------------------------------
T ss_pred h-----H----------------------------HHHHHHHHHHHhccccc---------cc-cccc-----------c
Confidence 0 0 00000111111111110 01 3566 7
Q ss_pred hcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChh
Q 046656 311 VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAP 358 (1326)
Q Consensus 311 ~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 358 (1326)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 78999999999999 99999999999888742 3566666666543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-11 Score=133.49 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=41.9
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEe
Q 046656 972 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 972 ia~-aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1036 (1326)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+. +..+|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677888888889999999999999999998876543 2345621 4589988775
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-09 Score=117.98 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=43.6
Q ss_pred hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hcCCEEEEEecCCcHH-------HHHHhceeeEEec
Q 046656 978 ANPSIIFMDEPTSGL--DARAAAIVMRTVKNTV-ETGRTVVCTIHQPSID-------IFEAFDELFLMKR 1037 (1326)
Q Consensus 978 ~~p~illLDEPtsgL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~D~v~~l~~ 1037 (1326)
.+|+++++|+|++.+ |+.....++..+.+++ +.|+|||+++|..... +.+.+|.++.|.+
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 5544445555555554 5699999999986521 4567899999975
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-08 Score=123.12 Aligned_cols=179 Identities=13% Similarity=0.133 Sum_probs=107.5
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE-EEEEcCccCCccccc-ceEEEeecCCCCCCCCCHH
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-NITISGYPKKQETFT-RISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+.+...+..... |..+.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 368888888999999999999999999999999874321 112 233322221111100 00000000 000
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCC
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 991 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPtsg 991 (1326)
+ .++. ..+...+ ..++.+.++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~------~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 Q------NLRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp H------HHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred H------HHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 0 0111 1223222 23455566665544332111 1258999987 5667776 67999999999987
Q ss_pred CCH--------HHHHHHHHHHHHHHhc-CCEEEEEec---------C--CcH-------HHHHHhceeeEEecCc
Q 046656 992 LDA--------RAAAIVMRTVKNTVET-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 992 LD~--------~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~D~v~~l~~gg 1039 (1326)
.+. .....+.+.|++++++ |++||+++| + |.. .+...+|.|++|.++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 742 3346677888888754 999999999 2 431 3566799999998753
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-09 Score=124.93 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=64.7
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEE---cCccCCccc--c-cceEEEeecCCC-------------
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI---SGYPKKQET--F-TRISGYCEQNDI------------- 905 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~gyv~Q~~~------------- 905 (1326)
+.+|++++|+||||||||||+++|+|... +.+|+|.+ +|.+..... . .+.+||++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 45689999999999999999999999876 45899999 887654211 1 135799999874
Q ss_pred ---CCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 046656 906 ---HSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-PLRQSLV 954 (1326)
Q Consensus 906 ---~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v 954 (1326)
++|.+|+ ||+.|.. .+. ..+....++++|+.++|. +..+...
T Consensus 244 ~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4788888 8888752 111 112234588999999995 5555543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-10 Score=132.83 Aligned_cols=150 Identities=17% Similarity=0.082 Sum_probs=92.6
Q ss_pred eEeeecceeEEeCC-------eEEEEeccCCCChhhHHhhhcCCCCC--CeeEEEEEEcCccCCc---ccccceEEEeec
Q 046656 835 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYISGNITISGYPKKQ---ETFTRISGYCEQ 902 (1326)
Q Consensus 835 ~~vL~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q 902 (1326)
..+++++++.+++| +.++|.||||+|||||+++|+|.... .+.+|.+..++.+... ...++.++++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34788888888876 88999999999999999999996521 1345665555443211 111346889998
Q ss_pred CCCCCCCCCHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 046656 903 NDIHSPLVTVYESLLYSAWLRLRTEV--DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANP 980 (1326)
Q Consensus 903 ~~~~~~~~Tv~E~l~f~~~lr~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p 980 (1326)
.+.+.+ ++.|++....... ..+. ......+.+++.++.+++.. +++.. ..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce-------
Confidence 776655 7888875432211 1000 01111223444444455543 33333 35999999998655
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046656 981 SIIFMDEPTSGLDARAAAIVMRTVKNTVE 1009 (1326)
Q Consensus 981 ~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1009 (1326)
.+||+.+...+.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888888899999988764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-09 Score=118.16 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=44.2
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE---CCccCCCCCcc-ce-EEEEccCCCCCC----CCCH
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY---NGHDMNEFVPQ-RT-AAYISQHDVHIG----EMTV 215 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~~-~~-~~yv~Q~d~~~~----~lTV 215 (1326)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+..... +. .+|+.|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 446689999999999999999999999999876 899998 88766533211 22 699999986654 6899
Q ss_pred HHHHH
Q 046656 216 RETLA 220 (1326)
Q Consensus 216 ~E~l~ 220 (1326)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8884
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-11 Score=136.37 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=86.9
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCC-CCCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQND-IHSPLV 910 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~-~~~~~~ 910 (1326)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.+.... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 45899999999999 99999999999999999999764 26899999765322 1234567777764 445566
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 911 TVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
++.|++.+.+..+. .. ... .+....+... ..|||||+||+.|++++..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666643221110 00 000 1222233333 248999999999999999999975 88864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-08 Score=114.05 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=75.0
Q ss_pred ceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHH
Q 046656 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSA 920 (1326)
Q Consensus 841 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~ 920 (1326)
+++..++|++++|+|+|||||||++..|++... ...|+|.+.+.+.... + ..|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~------~-------------a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA------A-------------AIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH------H-------------HHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH------H-------------HHHH-----
Confidence 455567899999999999999999999999654 2245676655432100 0 0111
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 046656 921 WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 997 (1326)
Q Consensus 921 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl---~ia~aL~~~p~illLDEPtsgLD~~~~ 997 (1326)
.....+.+++..+ ...|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 2233444555321 13688999999 89999999999999999974 2334
Q ss_pred HHHHHHHHHH
Q 046656 998 AIVMRTVKNT 1007 (1326)
Q Consensus 998 ~~i~~~l~~~ 1007 (1326)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=107.42 Aligned_cols=127 Identities=18% Similarity=0.092 Sum_probs=84.4
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHH
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLY 918 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f 918 (1326)
+++++. +|++++++|+||+||||+...|++... ...|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------AR-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------HH-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------HH-HHH--
Confidence 678887 999999999999999999999999654 23567777665432100 00 000
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHH
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 997 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP-tsgLD~~~~ 997 (1326)
..+.+..++.-+.. + .+-...+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01223344432211 0 12345566788999988899999999999 999998888
Q ss_pred HHHHHHHHHHHhcCCEEEEE
Q 046656 998 AIVMRTVKNTVETGRTVVCT 1017 (1326)
Q Consensus 998 ~~i~~~l~~~~~~g~tvi~~ 1017 (1326)
..+.+..+... ...+++++
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~ 218 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVL 218 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEE
Confidence 77777766543 23344433
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-08 Score=120.26 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=49.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 193 (1326)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4579999999999 999999999999999999999999988 8999999987754
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-10 Score=127.38 Aligned_cols=38 Identities=32% Similarity=0.253 Sum_probs=22.9
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhc-CCCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKT 873 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~-g~~~ 873 (1326)
+..+++|+++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999 9754
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-07 Score=108.85 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=77.8
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhh
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFS 222 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 222 (1326)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45556899999999999999999999999998765 677776553311 00 000111
Q ss_pred hhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhH
Q 046656 223 ARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302 (1326)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 302 (1326)
..+++.+|++. ....|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE----------ECCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE----------EecCCccCHH
Confidence 11233445542 2246899999
Q ss_pred HH---HHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHH
Q 046656 303 RL---TTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNI 342 (1326)
Q Consensus 303 Rv---sia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~ 342 (1326)
++ ++++++..+++++++|+|.. ......+++.|+++.
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 99 89999999999999999974 344556666666543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-07 Score=107.75 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhcCCEEEEEecCCcH-----
Q 046656 968 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVKNT----VETGRTVVCTIHQPSI----- 1023 (1326)
Q Consensus 968 qrl~ia~aL~~~--p~illLDEPtsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1023 (1326)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 1222344444444 3559999999996431
Q ss_pred ----------HHHHHhceeeEEecCcEEEEEcC
Q 046656 1024 ----------DIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 1024 ----------~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
.+...+|.++.+.+ ++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14456788888876 34444443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-07 Score=106.25 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=86.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHHhhhhhcc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQG 227 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 227 (1326)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998653 35 24566666532 3455555543221
Q ss_pred CCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhhhHHHHHH
Q 046656 228 VGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG 307 (1326)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia 307 (1326)
..|++... ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~~----------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLEV----------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCCB----------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeEe----------cCC-HHHHHHHHH
Confidence 11222100 012 233355565
Q ss_pred HHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEE-EecChhhHHhhCCeEEEecCCeEEEE
Q 046656 308 EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHI--LNGTAVIS-LLQPAPETYDLFDDIILLSDGQIVYQ 378 (1326)
Q Consensus 308 ~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~--~~~t~ii~-i~q~~~~~~~~~D~vilL~~G~iv~~ 378 (1326)
+ +.+++++|+| |+|+|+.....+.+ +.+.... ...++++. .+|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 99999876544433 3333210 11223332 36666777777887766677777753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-07 Score=99.62 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=42.6
Q ss_pred cCCccceEecCCCCC--CHHHHHHHHHHHHHHHHhcCCEEEEEEecChhh--------HHhhCCeEEEecC
Q 046656 312 GPALALFMDEISNGL--DSSTTFHIVNSLRQNIHILNGTAVISLLQPAPE--------TYDLFDDIILLSD 372 (1326)
Q Consensus 312 ~~~~illLDEptsgL--D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~--------~~~~~D~vilL~~ 372 (1326)
.+|+++++|+|++.+ |.....+++..+.+.++..+ .+++.++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTG-CTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTT-CEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCC-CeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 478999999999988 66556677777777766554 445556665544 4678899999964
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.6e-10 Score=126.06 Aligned_cols=77 Identities=25% Similarity=0.355 Sum_probs=55.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHD-VHIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 212 (1326)
..+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|+. ...+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 45799999999999 99999999999999999999875 6889998866432111 12345556552 23455
Q ss_pred CCHHHHHH
Q 046656 213 MTVRETLA 220 (1326)
Q Consensus 213 lTV~E~l~ 220 (1326)
+++.|++.
T Consensus 135 i~~iDeid 142 (278)
T 1iy2_A 135 IVFIDEID 142 (278)
T ss_dssp EEEEETHH
T ss_pred EEehhhhH
Confidence 56666663
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-08 Score=127.80 Aligned_cols=161 Identities=18% Similarity=0.232 Sum_probs=99.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCC-------
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHD------- 207 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d------- 207 (1326)
+...++++++..+++|+.++|+||||+|||||+++|+|.+++. ..|.+.+++.+.+... ..++|++|..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEK 120 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHH
Confidence 3455789999999999999999999999999999999999875 2488999887766543 3588887742
Q ss_pred ---------------CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHH
Q 046656 208 ---------------VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTD 272 (1326)
Q Consensus 208 ---------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~ 272 (1326)
+.+..+++.+|+.... +... +.+.+.. .. .
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~~--------------------~~~~v~~-------~~-------~ 165 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGRT--------------------KAPFIDA-------TG-------A 165 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECC-TTCS--------------------SCCEEEC-------TT-------C
T ss_pred HHHhhccchhhhhhcccccccccccceeecc-ccCC--------------------CCCEEEc-------CC-------C
Confidence 1112222222221100 0000 0000000 00 0
Q ss_pred HHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHH
Q 046656 273 YYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQ 340 (1326)
Q Consensus 273 ~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~ 340 (1326)
...+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 166 ~~~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 166 HAGALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CHHhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 0112222211111 1124699999999999999999999999999988 898887777777654
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=9.9e-10 Score=122.78 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=54.1
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCC-CCCCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHD-VHIGE 212 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 212 (1326)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 45799999999999 99999999999999999999875 6889988865432111 12344555542 23444
Q ss_pred CCHHHHH
Q 046656 213 MTVRETL 219 (1326)
Q Consensus 213 lTV~E~l 219 (1326)
+++.|++
T Consensus 111 i~~~Dei 117 (254)
T 1ixz_A 111 IVFIDEI 117 (254)
T ss_dssp EEEEETH
T ss_pred EEEehhh
Confidence 5555555
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4e-07 Score=103.70 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=82.5
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~ 925 (1326)
++|++++++|+||+||||++..|++.... ..| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47899999999999999999999986531 123 12455555442 234455543321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 046656 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVK 1005 (1326)
Q Consensus 926 ~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~ 1005 (1326)
+..++... . ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11222110 0 1232 23344555 45999999999 99999876655554433
Q ss_pred HHH---hcCCEEEE-EecCCcHHHHHHhceeeEEecCcEEE
Q 046656 1006 NTV---ETGRTVVC-TIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 1006 ~~~---~~g~tvi~-~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
-+. ..+.++++ ++|... ++.+.+|++-.+..+|.++
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEE
Confidence 322 12333444 378754 6777788777776654443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.6e-08 Score=104.96 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNT 1007 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~ 1007 (1326)
+...+|++++.+|+++++| ||++|..+...+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999888753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-08 Score=107.06 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=48.6
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHHHH
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
|+.+++|++++|+||||||||||+++|+|.++ .+.++|....... .++.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56678999999999999999999999999863 2445554433221 1345789999877666666666554
Q ss_pred h
Q 046656 221 F 221 (1326)
Q Consensus 221 f 221 (1326)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.9e-08 Score=117.45 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=46.4
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
.+|+|+|++|++ ++++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 479999999999 9999999999999999999999876 45899999998764
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-08 Score=124.03 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=91.9
Q ss_pred ceeEEeCCeEEEEeccCCCChhhHHhhhcC--CCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCC-CC-CCHHHHH
Q 046656 841 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHS-PL-VTVYESL 916 (1326)
Q Consensus 841 vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~-~~-~Tv~E~l 916 (1326)
+++.+.++..+.|.|.|||||||+++.|.. .... ..|++.+.+.+.+...+.. | ..-+.+. +- ..+.+..
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~el~~---~-~~lPhl~~~Vvtd~~~a~ 233 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLELSV---Y-EGIPHLLTEVVTDMKDAA 233 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSGGGG---G-TTCTTBSSSCBCSHHHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhhhhh---h-ccCCcccceeecCHHHHH
Confidence 567778899999999999999999999875 2221 1244555444433222211 0 0001111 00 1122222
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHcCCccccccc--ccCCCCCCCCHHHHHHH----------HHHHHHhhCCc-EE
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSL--VGLPGESGLSTEQRKRL----------TIAVELVANPS-II 983 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~--vg~~~~~~LSgGqrqrl----------~ia~aL~~~p~-il 983 (1326)
..-.++ ..+.+++ .++++..|+.++.+.. +. ..+|+||+|+. ++++++...|. ++
T Consensus 234 ~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 234 NALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 111111 1222333 3678888887654321 11 13677776642 35566677898 78
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh----cCCEEEEEecCCc
Q 046656 984 FMDEPTSGLDARAAAIVMRTVKNTVE----TGRTVVCTIHQPS 1022 (1326)
Q Consensus 984 lLDEPtsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1022 (1326)
++||++.-+|.. ...+.+.+.++++ .|.++|++||+|+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 3445555555543 2779999999997
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-07 Score=111.60 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=105.7
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
...|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~~ 245 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSAQ 245 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCHH
Confidence 45789999899999999999999999999999999876431 22 124454432 3333
Q ss_pred HHHHhh-hhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 217 ETLAFS-ARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 217 E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
+...-. +...+... .++ . .+...+.+ . ..+...++.++.... .+-+ ..+
T Consensus 246 ~l~~r~~~~~~~~~~-----~~l----~-~g~l~~~~--------------~-~~~~~a~~~l~~~~l---~i~d--~~~ 295 (454)
T 2r6a_A 246 QLVMRMLCAEGNINA-----QNL----R-TGKLTPED--------------W-GKLTMAMGSLSNAGI---YIDD--TPS 295 (454)
T ss_dssp HHHHHHHHHHHTCCH-----HHH----H-TSCCCHHH--------------H-HHHHHHHHHHHSSCE---EEEC--CTT
T ss_pred HHHHHHHHHHcCCCH-----HHH----h-cCCCCHHH--------------H-HHHHHHHHHHhcCCE---EEEC--CCC
Confidence 222110 00001100 000 0 00000000 0 011222333332221 1111 236
Q ss_pred CChhhhHHHHHHHHhh--cCCccceEecCCCCCCH--------HHHHHHHHHHHHHHHhcCCEEEEEEec----------
Q 046656 296 ISGGQKKRLTTGEMMV--GPALALFMDEISNGLDS--------STTFHIVNSLRQNIHILNGTAVISLLQ---------- 355 (1326)
Q Consensus 296 LSGGqkqRvsia~al~--~~~~illLDEptsgLD~--------~t~~~i~~~l~~~~~~~~~t~ii~i~q---------- 355 (1326)
+|++|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++..+.+ |+.++|
T Consensus 296 ~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~-vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 296 IRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVP-VIALSQLSRSVEQRQD 372 (454)
T ss_dssp CCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCC-EEEEECCCTTSTTC--
T ss_pred CCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCe-EEEEecCCcccccCCC
Confidence 8999987 4556665 68999999999998743 23367788888888766544 555666
Q ss_pred --Ch-------hhHHhhCCeEEEecCCeE
Q 046656 356 --PA-------PETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 356 --~~-------~~~~~~~D~vilL~~G~i 375 (1326)
|. ..+...+|.|++|..++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-07 Score=100.31 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=36.5
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHH
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQN 341 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~ 341 (1326)
|..-..+++.+|++++.+|+++++| ||++|.....++++.+.+.
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4333345678999999999999999 9999999999999988753
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=9.6e-08 Score=115.72 Aligned_cols=167 Identities=11% Similarity=0.031 Sum_probs=88.9
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhc-c-cCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCC--CHHHH
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAG-Q-LDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEM--TVRET 218 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G-~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~ 218 (1326)
+++.+..+..++|.|++||||||+|++|.. . ...+ .|+|.+.+.+..... .+.-..+|++ +|.++
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCS
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhh--------hhhhccCCcccceeecC
Confidence 677888899999999999999999999876 2 2322 466665554432110 0100112221 22222
Q ss_pred HHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCCh
Q 046656 219 LAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISG 298 (1326)
Q Consensus 219 l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 298 (1326)
...+.+... ....+ .+.+ ...++..|+.+..+.. ......+||
T Consensus 229 ~~~a~~~L~-----~~~~E-----------------------------merR-~~ll~~~Gv~~i~~yn--~~~~~~~s~ 271 (512)
T 2ius_A 229 MKDAANALR-----WCVNE-----------------------------MERR-YKLMSALGVRNLAGYN--EKIAEADRM 271 (512)
T ss_dssp HHHHHHHHH-----HHHHH-----------------------------HHHH-HHHHHHTTCSSHHHHH--HHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHH-----------------------------HHHH-HHHHHHcCCccHHHHH--HHHHHHhhc
Confidence 221111000 00011 1111 2346667766543210 001124799
Q ss_pred hhhHHH----------HHHHHhhcCCc-cceEecCCCCCCHHHHHHHHHHHHHHHHhcC--CEEEEEEecChh
Q 046656 299 GQKKRL----------TTGEMMVGPAL-ALFMDEISNGLDSSTTFHIVNSLRQNIHILN--GTAVISLLQPAP 358 (1326)
Q Consensus 299 GqkqRv----------sia~al~~~~~-illLDEptsgLD~~t~~~i~~~l~~~~~~~~--~t~ii~i~q~~~ 358 (1326)
||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++..+ |..++..+|...
T Consensus 272 G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 272 MRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp TCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 998863 24555667787 89999999988843 3445555555544322 455555666544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-06 Score=98.34 Aligned_cols=117 Identities=19% Similarity=0.105 Sum_probs=79.0
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHHHHHH
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... . + ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-~------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-A------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-H------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-h------------HH-HHHH
Confidence 678887 99999999999999999999999998765 6888877654311 0 0 00 0000
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
.+.+..|++.... +. +-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~~----~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---MD----GESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---CT----TCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---CC----CCCHHH
Confidence 0112234432210 00 122334
Q ss_pred hHHHHHHHHhhcCCccceEecC-CCCCCHHHHHHHHHHHHH
Q 046656 301 KKRLTTGEMMVGPALALFMDEI-SNGLDSSTTFHIVNSLRQ 340 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEp-tsgLD~~t~~~i~~~l~~ 340 (1326)
.+|.+++++...+++++++||| +.++|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688999988889999999999 999998877777766554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-08 Score=126.80 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=98.3
Q ss_pred ceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHH
Q 046656 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 834 ~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
...+++++++.+++|+.+.|+||||+|||||+++|++..... ..|.+.+++.+... ....++|+++.... .+.
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~----~~~ 118 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGR----RIV 118 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHH----HHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHH----HHH
Confidence 345889999999999999999999999999999999976532 34888888876543 23457888764210 011
Q ss_pred HHHHHHHHhhccCCCCHHHHHHH-------------------------HHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMF-------------------------IEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~-------------------------v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
|...-.+.... ... ..+... ....-+.+|..+..... ..++|+|++|
T Consensus 119 e~~~~~~~~~~--~~r-~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~~ 190 (604)
T 3k1j_A 119 EKYREKAKSQE--SVK-SSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQ-----SGGLGTPAHE 190 (604)
T ss_dssp HHHHHHHHHHT--CC------------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---------CCCCGGG
T ss_pred HHHHHhhccch--hhh-hhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhh-----cCCccccccc
Confidence 11111110000 000 000000 00011112211111111 1358999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKN 1006 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 1006 (1326)
++..++....++.+|||||... |++.....+.+.|.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999999988 899888888888774
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-09 Score=124.20 Aligned_cols=124 Identities=16% Similarity=0.183 Sum_probs=80.3
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDI-HSPLV 910 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~~ 910 (1326)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+.... ...+.+++++|... ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 35789999999999 89999999999999999998654 57888887653211 11234566777643 45667
Q ss_pred CHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 046656 911 TVYESLLYSAWLRLRT-EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSI 982 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~i 982 (1326)
++.|++...+..+... .....+..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 7777774322111100 0011112222333221 3789999999999999998875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.25 E-value=5e-08 Score=104.85 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=40.4
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCCCCC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDIHSP 908 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~~~~ 908 (1326)
|+++++|++++|+||||||||||+++|+|..+ .+.+++...... ..++.++|++|+...++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHH
Confidence 46678999999999999999999999999753 345555433211 12345688888654433
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.23 E-value=8e-07 Score=103.22 Aligned_cols=41 Identities=32% Similarity=0.410 Sum_probs=33.3
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEE-EECC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRV-TYNG 188 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G 188 (1326)
+-+++|+++.|.||||||||||+..+++...+. .|.| .+++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~ 97 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDA 97 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 468999999999999999999999999987543 4554 4444
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-09 Score=121.18 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=81.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCC-CCCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDI-HSPLV 910 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~-~~~~~ 910 (1326)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999 89999999999999999998654 57788887653211 11233566677642 45667
Q ss_pred CHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 046656 911 TVYESLLYSAWLRLRT-EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP 988 (1326)
Q Consensus 911 Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP 988 (1326)
++.|++...+..+... .....+..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7777774322111100 0011122222333322 3788999999999999999886 4543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.21 E-value=1e-06 Score=102.74 Aligned_cols=31 Identities=39% Similarity=0.562 Sum_probs=27.5
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+-+++|+++.|.||||||||||+..++....
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999988887653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-07 Score=97.73 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046656 970 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008 (1326)
Q Consensus 970 l~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1008 (1326)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 34589999999999999 99999999998888887653
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.11 E-value=7e-07 Score=98.03 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=23.3
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHh-cccCC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALA-GQLDS 176 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~-G~~~~ 176 (1326)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35689999999999999999999999999999999 98753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-07 Score=103.21 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=40.4
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-----------ccceEEEEccC
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV-----------PQRTAAYISQH 206 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 206 (1326)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 799999999999999999999999987 899999998762211 13457888874
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.03 E-value=5e-06 Score=100.43 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCCc
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVKNTV----ETGRTVVCTIHQPS 1022 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEP----------tsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1022 (1326)
+++++|-.++++....|.|||+||+ ++|.|......+.+++..+- ..+..||.+||+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6788888899999999999999999 44677776666667776652 34778999999975
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.8e-06 Score=98.47 Aligned_cols=157 Identities=15% Similarity=0.067 Sum_probs=86.7
Q ss_pred EEEEecCCCCChhHHHHHHhcccCCC-------C-ceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH---HHHH
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDSS-------L-KVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR---ETLA 220 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~~-------~-~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~---E~l~ 220 (1326)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. .....|++.|.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 48999999999999999999986411 0 24789999885432 123455555422 11221 1221
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
........-.-++. + .|+.. ..+....+..+++.+++.+..--.|+|. ..-+|+|+
T Consensus 254 ~~~~aD~il~VvD~----s--------~~~~~-----------~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~ 309 (364)
T 2qtf_A 254 EAKYSDALILVIDS----T--------FSENL-----------LIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDL 309 (364)
T ss_dssp GGGGSSEEEEEEET----T--------SCHHH-----------HHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCH
T ss_pred HHHhCCEEEEEEEC----C--------CCcch-----------HHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchH
Confidence 11000000000000 0 00000 0011122455677777765543444543 33478888
Q ss_pred hHHHHHH----HHh-hcCCccceEecCCCCCCHHHHHHHHHHHHHHHH
Q 046656 301 KKRLTTG----EMM-VGPALALFMDEISNGLDSSTTFHIVNSLRQNIH 343 (1326)
Q Consensus 301 kqRvsia----~al-~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~ 343 (1326)
++|+.++ +.+ ..++++ +|+|++|......+.+.+.+...
T Consensus 310 ~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 310 YKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8988877 554 333343 89999999999999998887644
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.6e-06 Score=98.95 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=27.1
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+-+++|+++.|.||+|+|||||+..+++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999999998753
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.3e-06 Score=100.32 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=85.3
Q ss_pred CeE-EEEeccCCCChhhHHhhhcCCCCC---------CeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH---
Q 046656 848 GVL-TALMGVSGAGKTTLMDVLAGRKTG---------GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE--- 914 (1326)
Q Consensus 848 Ge~-~al~G~nGaGKSTLl~~L~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E--- 914 (1326)
|-. ++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+. ..+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lve~f~~ 250 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIVDAFFV 250 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHHHHHHH
Confidence 444 999999999999999999996431 14578999988543 12233465544221 11111
Q ss_pred HHHHHH--H--hh-cc-CCCC--HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCc
Q 046656 915 SLLYSA--W--LR-LR-TEVD--SETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIA----VEL-VANPS 981 (1326)
Q Consensus 915 ~l~f~~--~--lr-~~-~~~~--~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia----~aL-~~~p~ 981 (1326)
.+.... . +. .. .+.. ..+..+.+.++++.+++.+..--.++.. ..-+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 111000 0 00 00 1111 1222334567788877654431111110 123677788888877 555 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 046656 982 IIFMDEPTSGLDARAAAIVMRTVKNTVE 1009 (1326)
Q Consensus 982 illLDEPtsgLD~~~~~~i~~~l~~~~~ 1009 (1326)
+ +|+|++|......+.+.|.+...
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999888654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.97 E-value=4e-07 Score=97.69 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=49.4
Q ss_pred eEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEccCCCCCCCCCHHHHHHh
Q 046656 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQHDVHIGEMTVRETLAF 221 (1326)
Q Consensus 144 s~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 221 (1326)
....++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|++...+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556789999999999999999999999975 77888887654211 11245788887555555566666654
Q ss_pred h
Q 046656 222 S 222 (1326)
Q Consensus 222 ~ 222 (1326)
.
T Consensus 96 ~ 96 (200)
T 4eun_A 96 A 96 (200)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.4e-07 Score=96.61 Aligned_cols=56 Identities=25% Similarity=0.181 Sum_probs=37.6
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccc--ccceEEEeecC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET--FTRISGYCEQN 903 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~--~~~~~gyv~Q~ 903 (1326)
....++|++++|+|+||||||||+++|++.. |.+.++|.+..... .+...|+++|+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 3556789999999999999999999999854 67888886653211 11234666664
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.9e-07 Score=100.35 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=39.3
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-----------ccccceEEEeecC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-----------ETFTRISGYCEQN 903 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q~ 903 (1326)
++++.+ ++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999998763 47899998876521 1124567888874
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.86 E-value=8.5e-06 Score=93.93 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=80.9
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESL 916 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l 916 (1326)
-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC---------CeEEEEeC------CCCHHHHH
Confidence 5667777799999999999999999999988875321 0 11 11233221 12322211
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 046656 917 LYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 996 (1326)
Q Consensus 917 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~ 996 (1326)
.++......+++..+.+ | .||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111122222222222 2 499999999999999999999999999875533
Q ss_pred HHHHHHHHHHHHhc--CCEEEEEec
Q 046656 997 AAIVMRTVKNTVET--GRTVVCTIH 1019 (1326)
Q Consensus 997 ~~~i~~~l~~~~~~--g~tvi~~~H 1019 (1326)
.|...++++.++ |..+|++-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 455566666543 677777743
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=6.9e-06 Score=105.66 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEE-ecCCcHHHHHHhceeeEE
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCT-IHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~D~v~~l 1035 (1326)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.+.....++|+++ ||++. .+.+.+++.-++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 379999999999999999999999999996 999877766666666554445677775 88764 566677654333
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.82 E-value=3.4e-05 Score=93.17 Aligned_cols=34 Identities=38% Similarity=0.668 Sum_probs=30.0
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 567788888877 8899999999999999999975
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.2e-05 Score=85.85 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHH
Q 046656 303 RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNI 342 (1326)
Q Consensus 303 Rvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~ 342 (1326)
....|++++.+|++.++| ||++|.....++++.+.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999 99999999999998887643
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.4e-07 Score=108.85 Aligned_cols=49 Identities=37% Similarity=0.569 Sum_probs=43.0
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 193 (1326)
.+++++++.+++| ++|.||||+|||||+++|+|... .|.+.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4689999999999 99999999999999999999875 6789999876543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.78 E-value=9.4e-06 Score=85.28 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=33.1
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCC
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS 177 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~ 177 (1326)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7889999999 99999999999999999999987654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.8e-05 Score=89.95 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe--cCCc
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVKNTVETGRTVVCTI--HQPS 1022 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLD-EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1022 (1326)
.+|++++|++. +.+...++-++++| +|++|+|......+.+.+.+... +..+|++. ||..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 47999998876 55555677788999 99999999988888777776543 77888888 7653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.72 E-value=5.8e-06 Score=95.07 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=61.0
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC---------c---cceEEEE-cc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV---------P---QRTAAYI-SQ 205 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~---~~~~~yv-~Q 205 (1326)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998765 789998877653211 1 3457888 77
Q ss_pred CCCCCCCCCHHHHHHhh
Q 046656 206 HDVHIGEMTVRETLAFS 222 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~ 222 (1326)
.....|..++++++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555667776653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=86.51 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=28.0
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSS 177 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~ 177 (1326)
.+++|++++|+||||||||||++.|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998554
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.8e-05 Score=84.66 Aligned_cols=40 Identities=25% Similarity=0.066 Sum_probs=25.6
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
...+++|||+.+++|++++|+|||||||||+.+.|++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999999998763
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.61 E-value=5.3e-06 Score=92.36 Aligned_cols=62 Identities=19% Similarity=0.073 Sum_probs=45.8
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHh---cccCCCCceeeEEE--------ECCccCCCCC----ccceEEEE
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALA---GQLDSSLKVSGRVT--------YNGHDMNEFV----PQRTAAYI 203 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 203 (1326)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.+. .+|.++.+.. ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887666 89998 8888774321 12457788
Q ss_pred ccC
Q 046656 204 SQH 206 (1326)
Q Consensus 204 ~Q~ 206 (1326)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 775
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.1e-05 Score=85.15 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=30.9
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.-|+++.+-+++|+++.|.|++|+|||||...++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35777777899999999999999999999888874
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.4e-06 Score=90.36 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=42.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEE--EECCccC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRV--TYNGHDM 191 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~ 191 (1326)
..+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchh
Confidence 3445667777778999999999999999999999999986 2 5776 7777554
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.7e-05 Score=85.14 Aligned_cols=139 Identities=18% Similarity=0.203 Sum_probs=87.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
...-|+.+.+-+.+|+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34568888888999999999999999999999999876431 11 13455432 3443
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
.+... |+ ... ..+ +.+.+..+ | .
T Consensus 87 ~ql~~---Rl-------------ls~--~~~-------------------------------v~~~~l~~---g-----~ 109 (338)
T 4a1f_A 87 EQLAL---RA-------------LSD--LTS-------------------------------INMHDLES---G-----R 109 (338)
T ss_dssp HHHHH---HH-------------HHH--HHC-------------------------------CCHHHHHH---T-----C
T ss_pred HHHHH---HH-------------HHH--hhC-------------------------------CCHHHHhc---C-----C
Confidence 33221 00 000 000 00000000 1 4
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
||+++++|++.|...+.++++++.|+|...+ .+|...++++....++..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 9999999999998888888999999986442 3566666666544324444443 77777754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.4e-06 Score=92.58 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=35.4
Q ss_pred eEEEecc-cceeccchhhhccccccCceEeeecceeEEeC---CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 809 SLTFDDV-TYSADMPKEMKLKGVHEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 809 ~l~~~~v-~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++++|+ ++.++ +...+|+|+|+.|++ |++++|+|++||||||+.++|++..
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4778888 77652 124599999999999 9999999999999999999999754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.54 E-value=4.5e-05 Score=98.16 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=57.2
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCC-CCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISN-GLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 44589999999999999999999999999996 9998877777776665421 22455556688877777888753
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.53 E-value=2.8e-05 Score=83.20 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.4
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
++++|++++|+|+||||||||+++|++...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999999764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=2.9e-05 Score=98.30 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=72.0
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCCCCCCCCHHHHHHHH
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDIHSPLVTVYESLLYS 919 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~ 919 (1326)
+.+++|..++|+|++|+|||||++.|++........|+| .+|...... ..++.+++..|...+... ++
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------- 74 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------- 74 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE-------
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE-------
Confidence 457789999999999999999999999643211234666 455433211 112223333332111100 00
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 046656 920 AWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 999 (1326)
Q Consensus 920 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~ 999 (1326)
...+.|+ ||...++ .......-..+.-++++| |+.|+|+.+...
T Consensus 75 --------------------------~~nliDT----pG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~ 118 (665)
T 2dy1_A 75 --------------------------RVFLLDA----PGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERA 118 (665)
T ss_dssp --------------------------EEEEEEC----CCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH
T ss_pred --------------------------EEEEEeC----CCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHH
Confidence 0011221 2211222 112222335677889999 999999887743
Q ss_pred HHHHHHHHHhcCCEEEEEecCCcH
Q 046656 1000 VMRTVKNTVETGRTVVCTIHQPSI 1023 (1326)
Q Consensus 1000 i~~~l~~~~~~g~tvi~~~H~~~~ 1023 (1326)
+ +.+.+.+.++|+++|..+.
T Consensus 119 ~----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 W----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H----HHHHHTTCCEEEEEECGGG
T ss_pred H----HHHHHccCCEEEEecCCch
Confidence 2 3333458889999997653
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.51 E-value=7.5e-06 Score=90.69 Aligned_cols=41 Identities=39% Similarity=0.479 Sum_probs=36.7
Q ss_pred ccceeecceeEEEeC---ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 135 KHLTILKDVSGIIKP---GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~---G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
...++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345699999999999 99999999999999999999999764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=3.9e-05 Score=80.57 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=30.9
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEEC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYN 187 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 187 (1326)
.+|++++|+||||||||||++.|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 368999999999999999999999987642 35666543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.45 E-value=1.9e-05 Score=90.74 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=41.0
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
+++++++.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3478999999999999999999999999999999654 2357888877664
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.5e-05 Score=80.87 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.2
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+++++.+.+| +++|+|+||||||||+++|.+..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999 99999999999999999998754
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.5e-07 Score=107.73 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=80.3
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCccc---ccceEEEeecCCC-CCCCCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET---FTRISGYCEQNDI-HSPLVT 911 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~---~~~~~gyv~Q~~~-~~~~~T 911 (1326)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+..... ..+.+..++|... ..|.++
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4788999999999 89999999999999999998653 467888886643211 1123445565543 344455
Q ss_pred HHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 046656 912 VYESLLYSAWLRLR-TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 990 (1326)
Q Consensus 912 v~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPts 990 (1326)
+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 55555321111110 00112233333444443 2677777888888888888887 788765
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.38 E-value=1.5e-05 Score=88.65 Aligned_cols=57 Identities=23% Similarity=0.133 Sum_probs=44.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhc---CCCCCCeeEEEEE--------EcCccCCc----ccccceEEEeecCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYISGNIT--------ISGYPKKQ----ETFTRISGYCEQND 904 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gyv~Q~~ 904 (1326)
++|++++|+|||||||||++++|+ |... +.+|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8755 5678888 88876632 13445678888754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00027 Score=80.61 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=82.7
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEE-cCccCCcccccceEEEeecCCCCCC-CCCHHHHHHHHHHhhcc
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI-SGYPKKQETFTRISGYCEQNDIHSP-LVTVYESLLYSAWLRLR 925 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i-~g~~~~~~~~~~~~gyv~Q~~~~~~-~~Tv~E~l~f~~~lr~~ 925 (1326)
+..++|+|++|+|||||++.|.|... .+ .+.+ ..+..+..|++.+++..+. .-|+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~--------~i~s~~~--~tTr~~~~gi~~~~~~~i~~iDTp------------- 64 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI--------SITSRKA--QTTRHRIVGIHTEGAYQAIYVDTP------------- 64 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE--------EECCCCS--SCCSSCEEEEEEETTEEEEEESSS-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc--------cccCCCC--CcceeeEEEEEEECCeeEEEEECc-------------
Confidence 34899999999999999999998642 11 1222 1223455677777643211 0011
Q ss_pred CCCCHHHHHHHHHHHHHHcCCc--cccccccc-CCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-HHH
Q 046656 926 TEVDSETRKMFIEEIMELVELK--PLRQSLVG-LPGESGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAI 999 (1326)
Q Consensus 926 ~~~~~~~~~~~v~~~l~~l~l~--~~~~~~vg-~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPtsgLD~~~-~~~ 999 (1326)
....+.. ....+.+...-.. ...|..+= ..... +|.|++ .+++.+. ..|.++++ +.+|... ...
T Consensus 65 -G~~~~~~-~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 65 -GLHMEEK-RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp -SCCHHHH-HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred -CCCccch-hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 0110000 0011111000000 01111110 01123 899987 4566666 67999998 7899876 566
Q ss_pred HHHHHHHHHhc-CC--EEEEEecCCcHHHHHHhceeeE
Q 046656 1000 VMRTVKNTVET-GR--TVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 1000 i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
+.+.++++.+. |. .+.+++|+-. .+.+++|.+.-
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~~ 171 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVRK 171 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHHH
Confidence 77888877653 43 5666777654 46667776653
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00025 Score=83.08 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEec
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETG-RTVVCTIH 1019 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1019 (1326)
.+..++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| ++|++.++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764334445433 34455666655445 57777766
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.35 E-value=6.9e-05 Score=79.97 Aligned_cols=38 Identities=29% Similarity=0.150 Sum_probs=24.4
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
...++|||+.+++|++++|+|++||||||+.+.|++..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00035 Score=82.29 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=35.2
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCCc
Q 046656 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE---TGRTVVCTIHQPS 1022 (1326)
Q Consensus 978 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1022 (1326)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888777766554 5788999999874
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=4.8e-05 Score=83.29 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=35.5
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccC
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 191 (1326)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.|.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445579999999999999999999999997 47788887654
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=2.8e-05 Score=83.45 Aligned_cols=70 Identities=6% Similarity=0.044 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHH-HHHHhceeeEEe
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSID-IFEAFDELFLMK 1036 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~D~v~~l~ 1036 (1326)
+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.++.. .+.++|+.+|..... +...||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678888889988888887643322 3345555555555444332 356888888865321 245578777775
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=4.5e-05 Score=83.51 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=34.3
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
++..++|++++|.|+||||||||+++|+|. .|+|.+++.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344578999999999999999999999986 36688887664
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.27 E-value=4.4e-05 Score=89.51 Aligned_cols=44 Identities=36% Similarity=0.338 Sum_probs=39.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY 186 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 186 (1326)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999964 577654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=3.8e-05 Score=90.14 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.6
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
..+|+++++.++ .++|+|++|||||||+++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00015 Score=78.05 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=27.3
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00012 Score=76.86 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG 885 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g 885 (1326)
+|++++|+||||||||||++.|++.... ...|.|....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~tt 41 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHTT 41 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeeccC
Confidence 6899999999999999999999986542 1345555443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.18 E-value=8.4e-05 Score=79.48 Aligned_cols=41 Identities=27% Similarity=0.121 Sum_probs=34.4
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
.++|++++|+|+||||||||++.|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 5689999999999999999999999998654 6777665543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00078 Score=77.32 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=33.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
...-|+++.+-+++|+++.|.|+||+|||||+..++...
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345688888889999999999999999999998888653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00014 Score=77.25 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=26.5
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999875
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00033 Score=74.95 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=38.0
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH--HhhCCeEEEec
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET--YDLFDDIILLS 371 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~--~~~~D~vilL~ 371 (1326)
+.|+.+|..+++.+..+|+.+.++ .+.+++.....+.+.++.. .++.+|+ -.+...+. ...||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~-~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLF-VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEE-ECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEE-EechhhhcCcHhhCCEEEEEE
Confidence 678999999999988888765444 3345666655555544331 2344443 34444343 56788877763
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0017 Score=73.50 Aligned_cols=60 Identities=27% Similarity=0.297 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----cCCEEEEEecCCc
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVKNTVE----TGRTVVCTIHQPS 1022 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1022 (1326)
+++++.|..++.+...+|.+||+||+.+-++.. ....++..+..... .+..||+++++|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 457777777888888899999999998776532 22233333333211 2356788898764
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0013 Score=76.27 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=28.7
Q ss_pred eecce-eEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 838 LNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 838 L~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
|+.+- +-+++|+++.|.|++|+|||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 57999999999999999999999988863
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00015 Score=75.42 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=30.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
.+|++++|+|||||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999974 566676643
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0015 Score=75.25 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=28.6
Q ss_pred eeecce-eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 837 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 837 vL~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 344443 5799999999999999999999998875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00028 Score=75.61 Aligned_cols=30 Identities=30% Similarity=0.190 Sum_probs=27.3
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++|++++|+|+||||||||++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999999999763
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.06 E-value=5.3e-05 Score=86.77 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=31.8
Q ss_pred ceeecceeEEEeCce------EEEEecCCCCChhHHHHHHhcccCC
Q 046656 137 LTILKDVSGIIKPGR------MTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~------~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
...|++++..+..++ +++|+||||||||||+++|.+.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345566666655554 9999999999999999999999863
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=76.60 Aligned_cols=57 Identities=9% Similarity=0.174 Sum_probs=42.2
Q ss_pred cCCChhhhHHHHHHHHhhcCCccceEe-cCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Q 046656 294 RGISGGQKKRLTTGEMMVGPALALFMD-EISNGLDSSTTFHIVNSLRQNIHILNGTAVISL 353 (1326)
Q Consensus 294 ~~LSGGqkqRvsia~al~~~~~illLD-EptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i 353 (1326)
..+|+||+|++. +.+...++-++++| ++.+|+|......+++.+..... +.+++++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 358999998876 55556778889999 99999999988888877776432 34554443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.003 Score=71.49 Aligned_cols=27 Identities=44% Similarity=0.691 Sum_probs=24.3
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++.-++|.||||+|||||++++++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999975
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=9.1e-05 Score=79.09 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=39.6
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEE--EEcCccC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNI--TISGYPK 888 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i--~i~g~~~ 888 (1326)
...++.++..++|++++|+|+||||||||.++|++... ..|.+ .++|.+.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 35566777778999999999999999999999998653 23555 7877554
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0032 Score=73.04 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=30.0
Q ss_pred eeccee-EEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 139 ILKDVS-GIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 139 iL~~vs-~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 57999999999999999999999999886
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0024 Score=73.57 Aligned_cols=36 Identities=33% Similarity=0.368 Sum_probs=30.5
Q ss_pred eeccee-EEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 139 ILKDVS-GIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 139 iL~~vs-~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 455543 679999999999999999999999998764
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00011 Score=86.18 Aligned_cols=37 Identities=22% Similarity=0.089 Sum_probs=34.7
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+|+++++.+++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4899999999999999999999999999999999853
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00028 Score=75.85 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.0
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00012 Score=92.72 Aligned_cols=47 Identities=32% Similarity=0.273 Sum_probs=34.9
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 193 (1326)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|....+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 457789999999999999999999999876431 236777 56655443
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0014 Score=78.96 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=92.0
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCC--CCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~--~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
-|+.+.+-+++|+++.|.|++|+|||||..-++.... .+ ..-+.++.. ++..+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE-----------------------~~~~~ 243 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLE-----------------------MPAAQ 243 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESS-----------------------SCHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECC-----------------------CCHHH
Confidence 4666667799999999999999999999988875321 01 001122211 12111
Q ss_pred HHH-H-HHHhhcc------CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEE
Q 046656 915 SLL-Y-SAWLRLR------TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV--ANPSIIF 984 (1326)
Q Consensus 915 ~l~-f-~~~lr~~------~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~--~~p~ill 984 (1326)
-.. + +.....+ ..++..+ ..++.+.++.+.-.++. +-. ..++|..+- .+.++.+. .+|++++
T Consensus 244 l~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIv 315 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLII 315 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEE
Confidence 110 0 0000000 1122222 22333444443222211 111 124777765 34556665 4799999
Q ss_pred EeCCCCCCCH----------HHHHHHHHHHHHHHhc-CCEEEEEecC-----------CcH-------HHHHHhceeeEE
Q 046656 985 MDEPTSGLDA----------RAAAIVMRTVKNTVET-GRTVVCTIHQ-----------PSI-------DIFEAFDELFLM 1035 (1326)
Q Consensus 985 LDEPtsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~-----------~~~-------~~~~~~D~v~~l 1035 (1326)
+|..+.=.+. .....+.+.|+.++++ |++||+++|- |.. .+...+|.+++|
T Consensus 316 ID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L 395 (444)
T 2q6t_A 316 IDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFI 395 (444)
T ss_dssp EECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEE
T ss_pred EcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEE
Confidence 9998754322 1224677778887754 9999999983 210 234567888888
Q ss_pred ec
Q 046656 1036 KR 1037 (1326)
Q Consensus 1036 ~~ 1037 (1326)
.+
T Consensus 396 ~r 397 (444)
T 2q6t_A 396 YR 397 (444)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00019 Score=88.16 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=35.9
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceee-EEE-ECCcc
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG-RVT-YNGHD 190 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 190 (1326)
.+++|++++|+|+||||||||+++|+|.+.+. +| ++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999875 55 674 77743
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0045 Score=72.70 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=25.0
Q ss_pred Cce--EEEEecCCCCChhHHHHHHhcccCC
Q 046656 149 PGR--MTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 149 ~G~--~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445 8999999999999999999998865
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00039 Score=71.95 Aligned_cols=27 Identities=41% Similarity=0.562 Sum_probs=24.6
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00061 Score=69.11 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=25.4
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhc
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G 172 (1326)
++.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566665 999999999999999999974
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0006 Score=73.01 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=26.6
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+++|++++|+|++||||||+.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00027 Score=73.40 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=29.7
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 468999999999999999999999753 456676644
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00055 Score=82.37 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=48.4
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeE-EecCcEEEEEcCCC
Q 046656 978 ANPSIIFMDEPTSGLDA-RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL-MKRGGQEIYVGPLG 1048 (1326)
Q Consensus 978 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~-l~~gg~~~~~G~~~ 1048 (1326)
.+|++||+||+..-.+. .++..+..++..+.+.|+.||+++|.+..++....+++.- +. .|.++..+++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCC
Confidence 38999999999887664 6777888999888878999999999864322112222222 22 35777777764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00058 Score=69.27 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.8
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhc
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 869 (1326)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 334455565 89999999999999999986
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0017 Score=77.27 Aligned_cols=26 Identities=38% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++.+++++|++|+||||++..|++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999754
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00024 Score=75.98 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=31.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
.++|++++|+|+||||||||++.|++... ...|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 57899999999999999999999998653 124566665443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00011 Score=84.20 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=33.9
Q ss_pred CceEeeecceeEEeCCe------EEEEeccCCCChhhHHhhhcCCCC
Q 046656 833 DKLVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 833 ~~~~vL~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
+....|++++..+..++ ++||+||||||||||+++|.+...
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34457778887777776 999999999999999999998653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00061 Score=72.24 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.2
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
.+|++++|+||||||||||++.|++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999998643
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0005 Score=80.74 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.8
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999753
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00022 Score=82.93 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=40.4
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG 188 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 188 (1326)
..+++++++..++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 35778888888999999999999999999999999988654 55555433
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00046 Score=79.62 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=42.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeee--------------cceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~--------------~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+.|+|+++.++. .+..|+ |+.+.+.+|+.++|+|++|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4678888776642 234677 89999999999999999999999999999874
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00058 Score=79.54 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=33.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 191 (1326)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999987665 67777665443
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=74.49 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.8
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788899999999999999999999754
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0007 Score=81.43 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=39.2
Q ss_pred cCCccceEecCCCCCCH-HHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE-ecCCeEEEEcCh
Q 046656 312 GPALALFMDEISNGLDS-STTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL-LSDGQIVYQGPC 381 (1326)
Q Consensus 312 ~~~~illLDEptsgLD~-~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil-L~~G~iv~~G~~ 381 (1326)
.++++|++||+..-.+. .+...+++.+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 37899999999887764 567778887776533 3445555444344332222222222 344555544443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0048 Score=73.33 Aligned_cols=35 Identities=29% Similarity=0.190 Sum_probs=29.3
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY 186 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 186 (1326)
++.+++++||+||||||++..|++.+.+. .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68999999999999999999999988654 455544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0011 Score=72.27 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=27.8
Q ss_pred ecceeEEEe---CceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 140 LKDVSGIIK---PGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 140 L~~vs~~i~---~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 677777776 8999999999999999999999998863
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00038 Score=85.99 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=40.0
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECC
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG 188 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 188 (1326)
..+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 34667777777 89999999999999999999999998764 67776655
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00042 Score=85.20 Aligned_cols=42 Identities=38% Similarity=0.532 Sum_probs=33.8
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE-EEE-EcCcc
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG-NIT-ISGYP 887 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G-~i~-i~g~~ 887 (1326)
.+++|++++|+|+||||||||+++|+|+..+ ..| ++. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4689999999999999999999999997642 244 564 77754
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0028 Score=65.49 Aligned_cols=27 Identities=37% Similarity=0.687 Sum_probs=23.3
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0083 Score=68.21 Aligned_cols=28 Identities=43% Similarity=0.508 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568999999999999999999998754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.001 Score=68.73 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00094 Score=69.67 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=30.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceee--EEEECCc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG--RVTYNGH 189 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~ 189 (1326)
++|++++|+|++||||||+++.|++.+.+ .| .+.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECCh
Confidence 47999999999999999999999998743 24 4555553
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0022 Score=76.11 Aligned_cols=46 Identities=24% Similarity=0.099 Sum_probs=36.6
Q ss_pred ecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 839 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 839 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
+++++. +|++++++|+||+||||++..|++.... ..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 577777 8999999999999999999999986542 246777766553
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.012 Score=64.26 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhce
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~ 1031 (1326)
+.|.-.+.. ...+.+-+++++||+-. ++|......+++.+.+....-+++++++--+.....+.|+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655553 33578899999999966 67776664444444443333356666655444344445543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00036 Score=81.68 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=36.9
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 214 (1326)
..+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....++
T Consensus 28 ~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~ 98 (361)
T 2qag_A 28 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLT 98 (361)
T ss_dssp HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEE
T ss_pred CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceE
Confidence 3455788888876 999999999999999998874432 3444333322211100112344444433333456
Q ss_pred HHHHHHh
Q 046656 215 VRETLAF 221 (1326)
Q Consensus 215 V~E~l~f 221 (1326)
+.++.-+
T Consensus 99 i~DTpG~ 105 (361)
T 2qag_A 99 VVDTPGY 105 (361)
T ss_dssp EEC----
T ss_pred EEEeccc
Confidence 6666555
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0037 Score=64.61 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=23.5
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999974
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.00098 Score=71.66 Aligned_cols=40 Identities=30% Similarity=0.353 Sum_probs=33.5
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCCCceee--EEEECCc
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG--RVTYNGH 189 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~ 189 (1326)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 5678999999999999999999999998643 56 6777653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0034 Score=75.47 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=39.3
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCC------C---CceeeEEEECCccCCCCC---ccceEEEEccCCCCCCCCCHHHH
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDS------S---LKVSGRVTYNGHDMNEFV---PQRTAAYISQHDVHIGEMTVRET 218 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~------~---~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~ 218 (1326)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|.++.-.+ .++...+.+|....+..++..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47899999999999999999998531 0 023789999997642211 12233344343333444444455
Q ss_pred HHh
Q 046656 219 LAF 221 (1326)
Q Consensus 219 l~f 221 (1326)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0018 Score=75.80 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=25.6
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999998743
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.052 Score=63.01 Aligned_cols=30 Identities=43% Similarity=0.614 Sum_probs=26.9
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999999888764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=67.76 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=25.0
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+.++.+.+| +++|+|||||||||++.+|.-.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 445556665 9999999999999999998643
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.00048 Score=80.01 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=34.6
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+++++++.+++|.+++|+|++|||||||++.|++..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999854
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0038 Score=65.62 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999988887 7799999999999999999973
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0024 Score=68.30 Aligned_cols=29 Identities=28% Similarity=0.675 Sum_probs=23.7
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhc
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 869 (1326)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 334555665 99999999999999999985
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0054 Score=73.63 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=29.1
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4666666689999999999999999999887775
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0044 Score=74.51 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=30.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCCC----------CCeeEEEEEEcCcc
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKT----------GGYISGNITISGYP 887 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~----------~~~~~G~i~i~g~~ 887 (1326)
.++|+|+||+|||||++.|+|... .++..|.+.++|.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 689999999999999999999642 11346888898874
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.025 Score=61.77 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=28.4
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCEEEEEec
Q 046656 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE--TGRTVVCTIH 1019 (1326)
Q Consensus 978 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1019 (1326)
.+|+++++..+.+.++......+...++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999998888888665555544443321 1358888888
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.00062 Score=79.64 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=32.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+.+++++..+. ++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~-------------~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVH-------------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHH-------------THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhC-------------CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 356677765432 244778888866 999999999999999998853
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.018 Score=62.77 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.3
Q ss_pred EEEEecCCCCChhHHHHHHhcccCC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5789999999999999999997653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0024 Score=68.16 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.4
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999999998874
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0043 Score=65.21 Aligned_cols=34 Identities=38% Similarity=0.463 Sum_probs=21.0
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999988887 5689999999999999999984
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0075 Score=67.73 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.8
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3556679999999999999999999754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0032 Score=65.48 Aligned_cols=40 Identities=28% Similarity=0.239 Sum_probs=30.4
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865432224777776644
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0026 Score=68.93 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=27.8
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEE
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTY 186 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 186 (1326)
+.+++|+|||||||||+.+.|++.+.-..--+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999976311011566654
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.024 Score=65.87 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.4
Q ss_pred eecce--eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 838 LNGVS--GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 838 L~~vs--~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 3589999999999999999999988875
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0031 Score=66.10 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=26.6
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999986
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0015 Score=76.11 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
+++.+++|+|++|||||||++.|+|... +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeec
Confidence 4688999999999999999999998543 124566665544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0033 Score=68.54 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=26.3
Q ss_pred eeecceeEEe---CCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 837 LLNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 837 vL~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
-|.++++++. +|.+++|.|++||||||+++.|+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566667666 899999999999999999999998654
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0017 Score=80.27 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=39.8
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
.+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 4677888887 899999999999999999999998764 346888777643
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0028 Score=66.49 Aligned_cols=30 Identities=43% Similarity=0.571 Sum_probs=26.9
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.++|.++.|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999998764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0023 Score=67.89 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=30.4
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888875 689999999999999999874
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.011 Score=63.86 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCcHHHHHHhceeeEEe
Q 046656 979 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIH---------QPSIDIFEAFDELFLMK 1036 (1326)
Q Consensus 979 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~D~v~~l~ 1036 (1326)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| .++.++.+.+|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 6543 45566777767999999999 56678888899998875
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0028 Score=70.24 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=32.2
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|-.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 456788999999999999999999999874 2456666643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0035 Score=74.34 Aligned_cols=45 Identities=24% Similarity=0.128 Sum_probs=38.5
Q ss_pred cceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 141 KDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 141 ~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 577777 89999999999999999999999998765 6778776644
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.003 Score=66.97 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.6
Q ss_pred EeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 836 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788888888887 5789999999999999999874
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0023 Score=69.96 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHhhcCCccceEecCCC-CCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCe
Q 046656 298 GGQKKRLTTGEMMVGPALALFMDEISN-GLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366 (1326)
Q Consensus 298 GGqkqRvsia~al~~~~~illLDEpts-gLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 366 (1326)
.|.-.+.. .....+-+++++||.-. ++|.......++.+..... ...+++++.+.+.+...++|++
T Consensus 163 pg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 163 VGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 34444442 33578889999999966 6877666555555544321 1235556666666666666654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.025 Score=63.31 Aligned_cols=29 Identities=45% Similarity=0.705 Sum_probs=24.9
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++++.-++|.||||+|||||+++++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34566799999999999999999999763
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0077 Score=63.86 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~ 926 (1326)
+...+.|.||+|+|||||+++|+.... .....+.+ .+..+.+.-........
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~ 104 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLI--------------------------VYVPELFRELKHSLQDQ 104 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEE--------------------------EEHHHHHHHHHHC---C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEE--------------------------EEhHHHHHHHHHHhccc
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC--CCCCCHHHHHHHHHHH
Q 046656 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEP--TSGLDARAAAIVMRTV 1004 (1326)
Q Consensus 927 ~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEP--tsgLD~~~~~~i~~~l 1004 (1326)
. ..+.++.+ .++++|++||+ ...-|......+...+
T Consensus 105 ~---------~~~~~~~~---------------------------------~~~~~lilDei~~~~~~~~~~~~ll~~~l 142 (202)
T 2w58_A 105 T---------MNEKLDYI---------------------------------KKVPVLMLDDLGAEAMSSWVRDDVFGPIL 142 (202)
T ss_dssp C---------CHHHHHHH---------------------------------HHSSEEEEEEECCC---CCGGGTTHHHHH
T ss_pred h---------HHHHHHHh---------------------------------cCCCEEEEcCCCCCcCCHHHHHHHHHHHH
Q ss_pred HHHHhcCCEEEEEecCCcHHHHHHh
Q 046656 1005 KNTVETGRTVVCTIHQPSIDIFEAF 1029 (1326)
Q Consensus 1005 ~~~~~~g~tvi~~~H~~~~~~~~~~ 1029 (1326)
......+..+|++|+.+..++...+
T Consensus 143 ~~~~~~~~~~i~tsn~~~~~l~~~~ 167 (202)
T 2w58_A 143 QYRMFENLPTFFTSNFDMQQLAHHL 167 (202)
T ss_dssp HHHHHTTCCEEEEESSCHHHHHHHS
T ss_pred HHHHhCCCCEEEEcCCCHHHHHHHH
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.055 Score=61.93 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhc--------------CCCCCCee-EEEEEEcCccCCcccccceEEEeecCCCCCCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLA--------------GRKTGGYI-SGNITISGYPKKQETFTRISGYCEQNDIHSPL 909 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~--------------g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 909 (1326)
+++|+++.|.|++|+|||||...++ |...++.. ..-++++....-.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~------------------- 155 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR------------------- 155 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC-------------------
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC-------------------
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc--------cccccccCCCCCCCCHHHHHHHHHHHHHhhC--
Q 046656 910 VTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP--------LRQSLVGLPGESGLSTEQRKRLTIAVELVAN-- 979 (1326)
Q Consensus 910 ~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--------~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~-- 979 (1326)
.+++.+.++.+++.. +.+.. =+..+.+.+..++.++.+
T Consensus 156 ------------------------~~~l~~~~~~~g~~~~~~~~~l~~~~~~--------~~~~~~~~l~~l~~~~~~~~ 203 (322)
T 2i1q_A 156 ------------------------PERIMQMAEHAGIDGQTVLDNTFVARAY--------NSDMQMLFAEKIEDLIQEGN 203 (322)
T ss_dssp ------------------------HHHHHHHHHHHTCCHHHHHHTEEEEECS--------SHHHHHHHHHTHHHHHHTTC
T ss_pred ------------------------HHHHHHHHHHcCCCHHHHhcCEEEEeCC--------CHHHHHHHHHHHHHHHhhcc
Q ss_pred -CcEEEEeCCCCCCCH------------HHHHHHHHHHHHHHhc-CCEEEEEec
Q 046656 980 -PSIIFMDEPTSGLDA------------RAAAIVMRTVKNTVET-GRTVVCTIH 1019 (1326)
Q Consensus 980 -p~illLDEPtsgLD~------------~~~~~i~~~l~~~~~~-g~tvi~~~H 1019 (1326)
++++++|.-+.-... .....+++.|++++++ |++||++.|
T Consensus 204 ~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 204 NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp EEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0015 Score=75.05 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=32.2
Q ss_pred eecceeEEEeCceE--EEEecCCCCChhHHHHHHhcccC
Q 046656 139 ILKDVSGIIKPGRM--TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 139 iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++++++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56777777788887 99999999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0026 Score=72.14 Aligned_cols=46 Identities=26% Similarity=0.159 Sum_probs=37.1
Q ss_pred cc-eeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 141 KD-VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 141 ~~-vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777766 9999999999999999999999998654 5667665433
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.005 Score=64.07 Aligned_cols=27 Identities=41% Similarity=0.417 Sum_probs=24.2
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++|++++|+|++||||||+.+.|++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999854
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0054 Score=71.87 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=26.0
Q ss_pred eeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 143 vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3345677888999999999999999999997
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.012 Score=60.21 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0052 Score=66.46 Aligned_cols=56 Identities=21% Similarity=0.075 Sum_probs=37.4
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCCC-CeeEEEEEE--------cCccCCc----ccccceEEEeecC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYISGNITI--------SGYPKKQ----ETFTRISGYCEQN 903 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~~-~~~~G~i~i--------~g~~~~~----~~~~~~~gyv~Q~ 903 (1326)
+.+++|+|++||||||+.+.|++.... .+..|++.. +|.+... ..+++.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 468999999999999999999975321 134566665 5554431 1233456777765
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.042 Score=63.94 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999998643
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0097 Score=68.29 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=34.2
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 046656 977 VANPSIIFMDEPTS-GLDARAAAIVMRTVKNTVETGRTVVCTIHQP 1021 (1326)
Q Consensus 977 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1021 (1326)
..++.+||+||+-. .-|..++..+...+....+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344777888888888777777788877754
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0054 Score=65.38 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999999998754
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0075 Score=66.70 Aligned_cols=45 Identities=38% Similarity=0.645 Sum_probs=30.2
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCcc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHD 190 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 190 (1326)
.++++++..++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 355666666665 8899999999999999999987522 35566543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.035 Score=66.65 Aligned_cols=38 Identities=26% Similarity=0.554 Sum_probs=33.2
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
..-|+.+.+-+++|+++.|.|+||+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777789999999999999999999999888764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.015 Score=60.47 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0071 Score=63.30 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.0
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0075 Score=64.10 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHhc
Q 046656 152 MTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G 172 (1326)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0092 Score=62.24 Aligned_cols=27 Identities=41% Similarity=0.679 Sum_probs=23.8
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0074 Score=68.64 Aligned_cols=65 Identities=9% Similarity=0.008 Sum_probs=38.6
Q ss_pred CChhhhHHHHHHHHhh--cCCccceEecCCCCCCHHH-HHHHHHHHHHHHHhcCC-EEEEEEecChhhHHhhCCeE
Q 046656 296 ISGGQKKRLTTGEMMV--GPALALFMDEISNGLDSST-TFHIVNSLRQNIHILNG-TAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 296 LSGGqkqRvsia~al~--~~~~illLDEptsgLD~~t-~~~i~~~l~~~~~~~~~-t~ii~i~q~~~~~~~~~D~v 367 (1326)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++....+. .++.+..+....+.+++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 888886 4566666 68889888 7888766 55666777766543332 23332333333444444443
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.026 Score=65.91 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.1
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998643
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0064 Score=64.61 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCChhHHHHHHhccc
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0093 Score=61.72 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0084 Score=65.03 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~ 926 (1326)
++..+.|.||+|+|||||++.++.... .....+.+-....-.....+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------------------------- 99 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASISTALL----------------------------- 99 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGSCGGGG-----------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHHHHHHH-----------------------------
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH--HHHHHHHH
Q 046656 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA--AAIVMRTV 1004 (1326)
Q Consensus 927 ~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~--~~~i~~~l 1004 (1326)
..+.+|.+|++|| ...++... ...+.+.+
T Consensus 100 ------------------------------------------------~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l 130 (242)
T 3bos_A 100 ------------------------------------------------EGLEQFDLICIDD-VDAVAGHPLWEEAIFDLY 130 (242)
T ss_dssp ------------------------------------------------TTGGGSSEEEEET-GGGGTTCHHHHHHHHHHH
T ss_pred ------------------------------------------------HhccCCCEEEEec-cccccCCHHHHHHHHHHH
Q ss_pred HHHHhcCCE-EEEEecCC
Q 046656 1005 KNTVETGRT-VVCTIHQP 1021 (1326)
Q Consensus 1005 ~~~~~~g~t-vi~~~H~~ 1021 (1326)
....+.+.. +|++++.+
T Consensus 131 ~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 131 NRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp HHHHHHCSCEEEEEESSC
T ss_pred HHHHHcCCCeEEEEcCCC
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0026 Score=73.67 Aligned_cols=41 Identities=29% Similarity=0.633 Sum_probs=35.4
Q ss_pred cceeecceeEEEeCceE--EEEecCCCCChhHHHHHHhcccCC
Q 046656 136 HLTILKDVSGIIKPGRM--TLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~--~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
...+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34577778888888988 999999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0086 Score=61.43 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0092 Score=69.95 Aligned_cols=44 Identities=18% Similarity=0.383 Sum_probs=32.9
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCCCC---------CCeeEEEEEEcCc
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYISGNITISGY 886 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~---------~~~~~G~i~i~g~ 886 (1326)
+.++.|..++|+|++|+|||||++.|+|... .++..|.+.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567888999999999999999999999621 1245677777663
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0042 Score=66.64 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=30.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEE--EEEEcC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISG--NITISG 885 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G--~i~i~g 885 (1326)
+++|.+++|+|++||||||+.+.|++... +..| .+.++|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 56899999999999999999999998653 1235 566664
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.15 Score=62.25 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=28.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
-|+.+.+-+++|+++.|.|++|+|||||..-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3555555689999999999999999999877764
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.012 Score=66.32 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNG 188 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 188 (1326)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 3578999999999999999999998763 24455554
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=61.25 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.0079 Score=69.48 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=31.7
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.033 Score=60.11 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEe---------cChhhHHhhCCeEEEec
Q 046656 313 PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLL---------QPAPETYDLFDDIILLS 371 (1326)
Q Consensus 313 ~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~---------q~~~~~~~~~D~vilL~ 371 (1326)
+++++++||.-. |+.. +++.++.++. .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999964 6643 4555566655 3455555443 45678889999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=59.86 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0093 Score=63.33 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.13 Score=59.89 Aligned_cols=27 Identities=41% Similarity=0.632 Sum_probs=23.7
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355678999999999999999999875
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.0039 Score=71.71 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=33.2
Q ss_pred EeeecceeEEeCCeE--EEEeccCCCChhhHHhhhcCCC
Q 046656 836 VLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 836 ~vL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+++++++.+++|+. ++|+|++||||||+.++|++..
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 378888888999988 9999999999999999999853
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=66.28 Aligned_cols=30 Identities=37% Similarity=0.605 Sum_probs=26.9
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.++++.-++|.||||+|||||.++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 357888999999999999999999999864
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.013 Score=60.82 Aligned_cols=38 Identities=34% Similarity=0.326 Sum_probs=28.5
Q ss_pred eEEEEeccCCCChhhHHhhhcCCCC-CCeeEEEEEEcCc
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRKT-GGYISGNITISGY 886 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g~ 886 (1326)
.+++|+|+||||||||++.|.+... .+...|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999998532 1233567776654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.012 Score=64.05 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=22.0
Q ss_pred eEEEEecCCCCChhHHHHHHhccc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.014 Score=61.15 Aligned_cols=27 Identities=41% Similarity=0.573 Sum_probs=24.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998765
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.16 Score=58.14 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=23.6
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..|..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3455678899999999999999999754
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.014 Score=64.64 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.4
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.014 Score=63.78 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=25.0
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.-++|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999865
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.017 Score=60.27 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.015 Score=60.75 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.6
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
...+|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999999754
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.077 Score=63.57 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=32.5
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
..-|+.+.+-+.+|+++.|.|+||+|||||+.-++...
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44577777779999999999999999999998887653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.33 E-value=0.0056 Score=69.40 Aligned_cols=46 Identities=26% Similarity=0.160 Sum_probs=34.7
Q ss_pred ec-ceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 839 NG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 839 ~~-vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
++ +++..+ |++++++|++|+||||++..|++... ...|++.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 45 777766 99999999999999999999998643 123556655443
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=60.63 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.6
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.02 Score=59.62 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.02 Score=60.81 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.1
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999988753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.02 Score=59.53 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.022 Score=59.24 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhHHHHHHhccc
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999999865
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.022 Score=58.28 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=18.3
Q ss_pred EEEEecCCCCChhHHHHHH
Q 046656 152 MTLLLGPPSSGKTTLLLAL 170 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L 170 (1326)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.015 Score=61.58 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.0
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+++|+|++||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998753
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.074 Score=62.02 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.5
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998763
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.025 Score=58.38 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred eEEEEecCCCCChhHHHHHHhc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G 172 (1326)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.091 Score=57.76 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~ 924 (1326)
+++..-+.|.||+|+|||||.+.++.... .--+.+++.+.....
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~~~-------------------------------- 79 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVEVI-------------------------------- 79 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSSSS--------------------------------
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHhhc--------------------------------
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC-----------C
Q 046656 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL-----------D 993 (1326)
Q Consensus 925 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgL-----------D 993 (1326)
.-.+..+.+-.+..+.-..|.+||+||.-.=. +
T Consensus 80 ------------------------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~ 123 (262)
T 2qz4_A 80 ------------------------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123 (262)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------
T ss_pred ------------------------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc
Q ss_pred HHHHHHHHHHHHHHHh----cCCEEEEEecCCc---HHHHH--HhceeeEEe
Q 046656 994 ARAAAIVMRTVKNTVE----TGRTVVCTIHQPS---IDIFE--AFDELFLMK 1036 (1326)
Q Consensus 994 ~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~~~--~~D~v~~l~ 1036 (1326)
......+.+++..+.. .+..+|.+++.+. ..+.. .||+.+.+.
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.02 Score=59.57 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999985
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.019 Score=60.26 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.3
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987764
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.021 Score=60.37 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.9
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999999764
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.02 Score=59.20 Aligned_cols=24 Identities=46% Similarity=0.535 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+.|+|+|||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.0094 Score=65.92 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=33.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCc
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGY 886 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~ 886 (1326)
++++.+ ..+++.++.|+|++||||||+.+.|+..... +.+.+++-
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecH
Confidence 334443 4677899999999999999999999975431 34566664
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.022 Score=58.64 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.1
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999998753
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.023 Score=58.99 Aligned_cols=26 Identities=42% Similarity=0.367 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCChhHHHHHHhccc
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56788999999999999999999664
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.46 Score=55.16 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhc
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRL 924 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~ 924 (1326)
+++|+++.|.|++|+|||||...++... ......+.|+.-+....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~------------------~~~g~~vlyi~~E~s~~----------------- 115 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA------------------QKAGGTCAFIDAEHALD----------------- 115 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH------------------HHTTCCEEEEESSCCCC-----------------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH------------------HHCCCeEEEEECCCChh-----------------
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCC----------
Q 046656 925 RTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL---------- 992 (1326)
Q Consensus 925 ~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~--~~p~illLDEPtsgL---------- 992 (1326)
....+.+++..-.-..... -+. .+.+.+++.++ .+++++++|..++=.
T Consensus 116 -------------~~~a~~~g~d~~~l~i~~~-----~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 116 -------------PVYARALGVNTDELLVSQP-----DNG--EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp -------------HHHHHHTTCCGGGCEEECC-----SSH--HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-----
T ss_pred -------------HHHHHHcCCCHHHceeecC-----CcH--HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhcCCEEEEEec
Q 046656 993 DA---RAAAIVMRTVKNT----VETGRTVVCTIH 1019 (1326)
Q Consensus 993 D~---~~~~~i~~~l~~~----~~~g~tvi~~~H 1019 (1326)
|. ..++.+.+.++++ .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.029 Score=59.76 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.4
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998765
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.027 Score=59.09 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.0
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.0069 Score=70.08 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=33.5
Q ss_pred eEeeecceeEEeCCeE--EEEeccCCCChhhHHhhhcCCC
Q 046656 835 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+++.++..++.|++ +.+.||+|+||||+++++++..
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3477888888899988 9999999999999999999854
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.031 Score=59.95 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.9
Q ss_pred CceEEEEecCCCCChhHHHHHHhc
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G 172 (1326)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.03 Score=57.81 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.026 Score=61.59 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.9
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999964
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.029 Score=57.38 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1326 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-16 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-23 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-18 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-20 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-18 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-16 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-20 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-17 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-23 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-18 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-14 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 9e-05 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 4e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.001 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.001 | |
| d1v5wa_ | 258 | c.37.1.11 (A:) Meiotic recombination protein DMC1/ | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.002 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 0.003 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 116 bits (292), Expect = 1e-29
Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
Query: 829 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISG 885
+ E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 886 YPKKQETFTRIS--GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMEL 943
+ T R G+ Q PL+T E++ + R + E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 944 VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
EL+ + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEE--RFANHKPNQ--LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1004 VKNTV-ETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+K E G+TVV H I++ + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 83.7 bits (207), Expect = 2e-18
Identities = 44/256 (17%), Positives = 91/256 (35%), Gaps = 47/256 (18%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
++ + LK+V+ IK G ++GP SGK+T+L + + G V +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKT 69
Query: 192 NEFVPQRTA-------AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKE 244
N+ ++ Q I +T E + + G ++ E+
Sbjct: 70 NDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG-------AMSGEER- 121
Query: 245 AGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRL 304
+ A E + L + + + +SGGQ++R+
Sbjct: 122 -------------RKRALECLKMAELEERFA--------------NHKPNQLSGGQQQRV 154
Query: 305 TTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364
+ + D+ + LDS T I+ L++ ++ +G V+ ++
Sbjct: 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARFG 212
Query: 365 DDIILLSDGQIVYQGP 380
+ II L DG++ +
Sbjct: 213 ERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 110 bits (277), Expect = 1e-27
Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 23/228 (10%)
Query: 821 MPKEM--KLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG 874
M ++ +++ +H + + G+ G + L+G +GAGKTT + +AG R
Sbjct: 1 MVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60
Query: 875 GYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRK 934
G I N + P +TVYE+L+ A+ R D E K
Sbjct: 61 GKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIK 116
Query: 935 MFIEEIMEL-VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 993
+E I L LK + L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 117 RDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA 171
Query: 994 ARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
+ V ++ + G T++ + A ++++ G
Sbjct: 172 PILVSEVFEVIQKINQEGTTILLVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 78.0 bits (192), Expect = 2e-16
Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 42/258 (16%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLD-SSLKVSGRVTYNG 188
L + +K + + G++ L+G +GKTT L A+AG + K+
Sbjct: 12 LHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT 71
Query: 189 HDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIK 248
+ + + A + + E+TV E L A + + R +
Sbjct: 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE------GIKRDLEWI--- 122
Query: 249 PDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE 308
+ L L G +SGG+++ L G
Sbjct: 123 -------------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGR 152
Query: 309 MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368
++ L MDE S GL + +++ GT ++ + Q A +
Sbjct: 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGY 210
Query: 369 LLSDGQIVYQGPCELVLD 386
+L GQIV +G +LD
Sbjct: 211 VLETGQIVLEGKASELLD 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (277), Expect = 1e-27
Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 14/224 (6%)
Query: 826 KLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNI 881
+ + + + + L+GVS + G +T ++G +G+GK+TL++V+ G + G +
Sbjct: 6 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 65
Query: 882 TISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFI---- 937
+ E + Q +TV E+LL + ++S K +I
Sbjct: 66 KDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 125
Query: 938 ---EEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 994
E+ +++E L GE LS Q K + I L+ NP +I MDEP +G+
Sbjct: 126 EMVEKAFKILEFLKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 183
Query: 995 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
A + V G T + H+ + D L++M G
Sbjct: 184 GLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 99.7 bits (248), Expect = 1e-23
Identities = 56/261 (21%), Positives = 93/261 (35%), Gaps = 35/261 (13%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
+ L VS + G +TL++GP SGK+TL+ + G L + GRV +
Sbjct: 10 IVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENK 66
Query: 190 DMNEFVP----QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEA 245
D+ P Q + EMTV E L C G + + ++E
Sbjct: 67 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 126
Query: 246 GIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT 305
M A + L+ L L D G+ +SGGQ K +
Sbjct: 127 -----------MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLVE 160
Query: 306 TGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365
G ++ + MDE G+ I N + + G + + + D
Sbjct: 161 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYID 218
Query: 366 DIILLSDGQIVYQGPCELVLD 386
+ ++ +GQI+ +G E +
Sbjct: 219 HLYVMFNGQIIAEGRGEEEIK 239
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 110 bits (276), Expect = 2e-27
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 25/224 (11%)
Query: 824 EMKLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISG 879
E+KL+ + + +N ++ + G L+G SG GKTT + ++AG T G
Sbjct: 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EG 61
Query: 880 NITISGYPKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIE 938
I R Q+ P +TVYE++ + ++ + + +
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVR 118
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
EL++++ L + LS QR+R+ +A +V P ++ MDEP S LDA+
Sbjct: 119 WAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 173
Query: 999 IVMRTVKN-TVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
+ +K + T + H D EA D + +M RG
Sbjct: 174 AMRAEIKKLQQKLKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 103 bits (258), Expect = 5e-25
Identities = 57/277 (20%), Positives = 103/277 (37%), Gaps = 52/277 (18%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
LT + + T + ++ IK G +LLGP GKTT L +AG + + GR+ +
Sbjct: 12 LTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDR 68
Query: 190 DMNEFVP-QRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIK 248
D+ P R + + Q MTV E +AF + + E+ +R + A
Sbjct: 69 DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD-----EIDKRVRWA--- 120
Query: 249 PDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE 308
++L ++ + +SGGQ++R+
Sbjct: 121 --------------------------AELLQIEELL-----NRYPAQLSGGQRQRVAVAR 149
Query: 309 MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368
+V L MDE + LD+ + +++ + I + E + D I
Sbjct: 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIA 208
Query: 369 LLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405
+++ GQ++ G V + P VA F+
Sbjct: 209 VMNRGQLLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 105 bits (264), Expect = 1e-25
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFT 894
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 895 RIS-----------GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMEL 943
Q+ +TV E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 944 VELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1003
V + Q P LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGK--YPVH--LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1004 VKNTVETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
++ E G+T+V H ++ A + + +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 82.6 bits (204), Expect = 9e-18
Identities = 52/284 (18%), Positives = 103/284 (36%), Gaps = 36/284 (12%)
Query: 125 NSIHI--LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSG 182
N +H+ L + +LK VS + G + ++G SGK+T L + S G
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EG 57
Query: 183 RVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARRE 242
+ NG ++N + D + + R V +++ + + E
Sbjct: 58 AIIVNGQNINL---------VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 108
Query: 243 KEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKK 302
++ ++ +A YL +G+D A + +SGGQ++
Sbjct: 109 N--------VMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQ 156
Query: 303 RLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYD 362
R++ + L DE ++ LD ++ ++Q G ++ +
Sbjct: 157 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFARH 214
Query: 363 LFDDIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQ 406
+ +I L G+I +G E V F P+ + FL+
Sbjct: 215 VSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 103 bits (257), Expect = 1e-24
Identities = 37/201 (18%), Positives = 80/201 (39%), Gaps = 19/201 (9%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
+C Q P T+ E++++ E ++ + ++ + +++G
Sbjct: 100 SFCSQFSWIMP-GTIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCT 1017
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1018 IHQPSIDIFEAFDELFLMKRG 1038
+ D++ ++ +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.7 bits (225), Expect = 2e-20
Identities = 53/281 (18%), Positives = 94/281 (33%), Gaps = 60/281 (21%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
+LK+++ I+ G M + G SGKT+LL+ + G+L++S G + ++G F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVS--FCSQ- 104
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
I T++E + F K ++ D+
Sbjct: 105 --------FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQQDI------- 141
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
+T++G+ V +SGGQ+ R++ + A
Sbjct: 142 -------------------TKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYL 181
Query: 319 MDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
+D LD T + S + N T ++ + E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFY 238
Query: 379 G-PCEL-------VLDFFESMGFKCPERKSVADFLQEVTSR 411
G EL F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (255), Expect = 1e-24
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 26/234 (11%)
Query: 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869
L F +VT++ ++ L ++ G AL+G SG+GK+T+ ++
Sbjct: 14 LEFRNVTFTYP-----------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 870 GRKTGGYISGNITISGYPKKQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926
G+I + G+ ++ + QN R
Sbjct: 63 RFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG--LSTEQRKRLTIAVELVANPSIIF 984
+++ R + M+ + L + GE+G LS QR+R+ IA L+ + I+
Sbjct: 121 QIEEAAR---MAYAMDFINKMD--NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 175
Query: 985 MDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+DE TS LD + + + + RT + H+ S E DE+ +++ G
Sbjct: 176 LDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 82.6 bits (204), Expect = 7e-18
Identities = 53/250 (21%), Positives = 103/250 (41%), Gaps = 42/250 (16%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
L++++ I G+ L+G SGK+T+ + D G + +GHD+ E+
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 85
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
R + +VH+ TV +A Y E +R + E +
Sbjct: 86 SLRNQVALVSQNVHLFNDTVANNIA-----------YARTEEYSREQIEEAAR------- 127
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
A A + + +D DT++G E +SGGQ++R+ ++ +
Sbjct: 128 --MAYAMD------------FINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSP 172
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
L +DE ++ LD+ + I +L + + + ++ T + D+I+++ DG I
Sbjct: 173 ILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVEDGII 228
Query: 376 VYQGPCELVL 385
V +G +L
Sbjct: 229 VERGTHSELL 238
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (251), Expect = 1e-24
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRIS 897
L ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 898 GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLP 957
+ + I ++V + L A L + K I + +E VE+ L++ L
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKKL---- 123
Query: 958 GESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVC 1016
LS +R+ +A L+ N I +D+P +D + V++++ + E G ++
Sbjct: 124 --GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1017 TIHQPSI 1023
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.5 bits (188), Expect = 3e-16
Identities = 33/215 (15%), Positives = 74/215 (34%), Gaps = 48/215 (22%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 198 RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
++ + + +++V + L A GV + + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 258 KAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALAL 317
L+ + + + +S G +R+ ++ A
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 318 FMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVIS 352
+D+ +D + ++ S+ + I G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (252), Expect = 2e-24
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 833 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQET 892
K +L G+S G + L+G +GAGKTT + +++ SG +T+ G +E
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEP 70
Query: 893 --FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLR 950
++ Y + + E L + A S + +E E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 951 QSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET 1010
+ V S S ++L IA L+ NP + +DEPTSGLD A V + +K +
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1011 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 90.4 bits (224), Expect = 1e-20
Identities = 57/282 (20%), Positives = 99/282 (35%), Gaps = 54/282 (19%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
L + ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G
Sbjct: 8 LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGK 64
Query: 190 DMNEFVPQ--RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGI 247
++ E + + +Y+ + M E L F A S
Sbjct: 65 NVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS---------------- 108
Query: 248 KPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTG 307
E + + ++ GL + V S G ++L
Sbjct: 109 ------------------EIEEMVERATEIAGLGEKI-----KDRVSTYSKGMVRKLLIA 145
Query: 308 EMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367
++ +DE ++GLD + L+Q T ++S E L D I
Sbjct: 146 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSHNM-LEVEFLCDRI 203
Query: 368 ILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFLQEVT 409
L+ +G IV G E + + + +++ + +EV
Sbjct: 204 ALIHNGTIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 100 bits (251), Expect = 3e-24
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 14/215 (6%)
Query: 829 GVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISG 885
+ LN VS G + ++G SGAGK+TL+ + R T G + ++
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
Query: 886 YPKKQET-FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV 944
+ + T R G Q+ TV+ ++ L + + + R + E++ LV
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLV 128
Query: 945 ELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1004
L S P LS Q++R+ IA L +NP ++ DE TS LD ++ +
Sbjct: 129 GLGDKHDSY---PSN--LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 1005 KNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
K+ G T++ H+ + + D + ++ G
Sbjct: 184 KDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 90.3 bits (224), Expect = 1e-20
Identities = 51/279 (18%), Positives = 95/279 (34%), Gaps = 57/279 (20%)
Query: 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDM 191
+ + L +VS + G++ ++G +GK+TL+ + + G V +G ++
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQEL 69
Query: 192 NEFVPQRTA------AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEA 245
I QH + TV +A E+ RR E
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRVTEL 124
Query: 246 GIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLT 305
L ++GL D +SGGQK+R+
Sbjct: 125 -----------------------------LSLVGLGDKH-----DSYPSNLSGGQKQRVA 150
Query: 306 TGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365
+ L DE ++ LD +TT I+ L ++I+ G ++ + + D
Sbjct: 151 IARALASNPKVLLCDEATSALDPATTRSILE-LLKDINRRLGLTILLITHEMDVVKRICD 209
Query: 366 DIILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADF 404
+ ++S+G+++ Q V F P+ F
Sbjct: 210 CVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 98.5 bits (245), Expect = 2e-23
Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 29/224 (12%)
Query: 825 MKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITIS 884
M+L+ V E L +SG R G + L+G +GAGK+TL+ +AG +G G+I +
Sbjct: 4 MQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 58
Query: 885 GYPKKQETFTRIS---GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIM 941
G P + + T+++ Y Q V+ L + RTE+ ++
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL--------NDVA 110
Query: 942 ELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDA 994
+ L LS + +R+ +A ++ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 995 RAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
+ + + + + G +V + H + +L+K G
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (197), Expect = 4e-17
Identities = 49/259 (18%), Positives = 80/259 (30%), Gaps = 60/259 (23%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
T L +SG ++ G + L+GP +GK+TLL +AG G + + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 68
Query: 198 RTA---AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFID 254
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 255 VFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPA 314
+ L + L LD +SGG+ +R+ +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 315 LA-------LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367
L +DE N LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 368 ILLSDGQIVYQGPCELVLD 386
LL G+++ G E VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 98.3 bits (245), Expect = 3e-23
Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 25/240 (10%)
Query: 803 LPFEPYSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 862
+ + + D V++ + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 863 TLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCE--QNDIHSPLVTVYESLLYSA 920
TL++++ SG I I G+ K + Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 921 WLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG--LSTEQRKRLTIAVELVA 978
EV + + + P Q GE G LS Q++RL+IA +
Sbjct: 117 PTATDEEVVEAAKMA---NAHDFIMNLP--QGYDTEVGERGVKLSGGQKQRLSIARIFLN 171
Query: 979 NPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
NP I+ +DE TS LD + +I+ + + RT + H+ S D++ +++ G
Sbjct: 172 NPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 95.6 bits (238), Expect = 2e-22
Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR 198
ILKD++ I+ G +G GK+TL+ + D + SG++ +GH++ +F+
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 89
Query: 199 TAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVF 256
I Q D + TV+E + G E+ K A
Sbjct: 90 LRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------ 136
Query: 257 MKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALA 316
++ L DT VG E +SGGQK+RL+ + +
Sbjct: 137 --------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPI 175
Query: 317 LFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIV 376
L +DE ++ LD + I +L + + ++ T D I+++ +G IV
Sbjct: 176 LILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIENGHIV 231
Query: 377 YQGPCELVLD 386
G ++
Sbjct: 232 ETGTHRELIA 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 97.3 bits (242), Expect = 5e-23
Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 23/231 (9%)
Query: 811 TFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870
TF ++ + D V+L+ ++ + + G + ++G SG+GK+TL ++
Sbjct: 3 TFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 871 RKTGGYISGNITISGYP---KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTE 927
+G + I G+ R G Q D ++ +++ +
Sbjct: 52 FYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGMS 105
Query: 928 VDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987
V+ + + + + + +GLS QR+R+ IA LV NP I+ DE
Sbjct: 106 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDE 165
Query: 988 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
TS LD + ++MR + + GRTV+ H+ S + D + +M++G
Sbjct: 166 ATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (203), Expect = 8e-18
Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 45/251 (17%)
Query: 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ- 197
IL +++ IK G + ++G SGK+TL + +G+V +GHD+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 198 --RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
R + Q D + ++ + ++ + + ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGAH------- 119
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
+ L +T+VG++ +SGGQ++R+ +V
Sbjct: 120 -------------------DFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPK 159
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
L DE ++ LD + I+ ++ + I G VI + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 376 VYQGPCELVLD 386
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.8 bits (233), Expect = 1e-21
Identities = 44/256 (17%), Positives = 101/256 (39%), Gaps = 42/256 (16%)
Query: 134 KKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNE 193
+ + +L+ ++ ++PG +T L+GP SGK+T+ L + G++ +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 194 FVPQ---RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPD 250
+ + R A + Q + + +++E +A+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLT-------------------------- 113
Query: 251 LFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMM 310
K E A V + + + GL DT V E +SGGQ++ + +
Sbjct: 114 ------QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD-EAGSQLSGGQRQAVALARAL 166
Query: 311 VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370
+ L +D+ ++ LD+++ + L ++ + + ++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 371 SDGQIVYQGPCELVLD 386
G I G + +++
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.4 bits (232), Expect = 2e-21
Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 21/234 (8%)
Query: 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 868
+ F DV+++ ++ + L G++ RPG +TAL+G +G+GK+T+ +L
Sbjct: 11 LVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 869 AGRKTGGYISGNITISGYP---KKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR 925
G + + G P + R Q ++ E++ Y L +
Sbjct: 61 QNLYQ--PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAY--GLTQK 115
Query: 926 TEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 985
++ T + P S LS QR+ + +A L+ P ++ +
Sbjct: 116 PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 175
Query: 986 DEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
D+ TS LDA + V + + + E R+V+ S + E D + ++ G
Sbjct: 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGG 227
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 90.8 bits (225), Expect = 7e-21
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 21/220 (9%)
Query: 826 KLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITI 883
+L+ V + ++V+ ++ G +G SG GK+TL+ ++AG +T SG++ I
Sbjct: 2 QLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI 59
Query: 884 SGYPKKQETFTRIS-GYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIME 942
G Q+ P ++V E++ + L E + ++ E
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAE 116
Query: 943 LVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1002
+++L L LS QR+R+ I LVA PS+ +DEP S LDA +
Sbjct: 117 VLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171
Query: 1003 TVKNTV-ETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
+ GRT++ H D EA D++ ++ G
Sbjct: 172 EISRLHKRLGRTMIYVTH----DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.5 bits (206), Expect = 2e-18
Identities = 54/277 (19%), Positives = 97/277 (35%), Gaps = 52/277 (18%)
Query: 130 LTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189
+T + + KD++ I G + +GP GK+TLL +AG + SG +
Sbjct: 6 VTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEK 62
Query: 190 DMNEFVPQRTA-AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIK 248
MN+ P + Q ++V E ++F + G + +R +
Sbjct: 63 RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-----VINQRVNQV--- 114
Query: 249 PDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGE 308
+VL L D +SGGQ++R+ G
Sbjct: 115 --------------------------AEVLQLAHLLDRKPKA-----LSGGQRQRVAIGR 143
Query: 309 MMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368
+V +DE + LD++ + +H G +I + E L D I+
Sbjct: 144 TLVAEPSVFLLDEPLSNLDAALRVQMRI-EISRLHKRLGRTMIYVTHDQVEAMTLADKIV 202
Query: 369 LLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405
+L G++ G + + P + VA F+
Sbjct: 203 VLDAGRVAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.6 bits (217), Expect = 1e-19
Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 23/232 (9%)
Query: 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869
L+ V ++ ++D +L +S +P + A G SG GK+T+ +L
Sbjct: 2 LSARHVDFA------------YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
Query: 870 G--RKTGGYIS-GNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRT 926
+ T G I+ I + + G+ Q+ T+ E+L Y
Sbjct: 50 RFYQPTAGEITIDGQPIDNISLEN--WRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTD 106
Query: 927 EVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMD 986
E + + VE P + + +S QR+RL IA + NP I+ +D
Sbjct: 107 EDLWQVLD--LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD 164
Query: 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
E T+ LD+ + ++V + + + ++ GRT + H+ S D+++ +++G
Sbjct: 165 EATASLDSESESMVQKALDSLMK-GRTTLVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.0 bits (205), Expect = 5e-18
Identities = 51/251 (20%), Positives = 85/251 (33%), Gaps = 42/251 (16%)
Query: 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ 197
IL+D+S +P + GP GK+T+ L + +G +T +G ++ +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 198 RTAAYIS--QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
+ I D I T+RE L + + +LA PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
+T VG E ISGGQ++RL +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
L +DE + LDS + + +L ++ G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 376 VYQGPCELVLD 386
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 23/224 (10%)
Query: 826 KLKGVHE--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNI 881
+L V + ++ + +S + G L+G SG GKTT + ++AG + G I
Sbjct: 5 RLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64
Query: 882 TISGYPKKQE---TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIE 938
+ P+K R Q+ P +TVY+++ + LR +V + +
Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVR 121
Query: 939 EIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998
E+ EL+ L L P E LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 122 EVAELLGLTELLNR---KPRE--LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 999 IVMRTVKNTV-ETGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1038
+ +K + G T + H D EA D + +M RG
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 73.0 bits (179), Expect = 1e-14
Identities = 52/270 (19%), Positives = 95/270 (35%), Gaps = 44/270 (16%)
Query: 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV 195
+T ++++S +K G +LLGP GKTT L +AG + S G++ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVA--- 68
Query: 196 PQRTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDV 255
++ D I + L + L ++ R+E + +
Sbjct: 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV-------- 120
Query: 256 FMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPAL 315
++LGL + R +SGGQ++R+ G +V
Sbjct: 121 ----------------REVAELLGLTELLN-----RKPRELSGGQRQRVALGRAIVRKPQ 159
Query: 316 ALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375
MDE + LD+ + L++ L T + E + D I +++ G +
Sbjct: 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVL 218
Query: 376 VYQGPCELVLDFFESMGFKCPERKSVADFL 405
G + V + P VA F+
Sbjct: 219 QQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.4 bits (208), Expect = 2e-18
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 14/210 (6%)
Query: 834 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYISGNITISGYPKKQE 891
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 892 T--FTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL 949
R G Q P +T +E++ + ++ E + +EE+ +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 950 RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV- 1008
P E LS Q++R+ +A LV +PS++ +DEP S LDAR VK
Sbjct: 134 LNH---FPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1009 ETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038
G T++ H P+ DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 77.8 bits (191), Expect = 2e-16
Identities = 51/279 (18%), Positives = 98/279 (35%), Gaps = 57/279 (20%)
Query: 133 KKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMN 192
KK + L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 193 EFVPQ------RTAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAG 246
R + Q +T E +AF + R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------IRKR--- 120
Query: 247 IKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTT 306
+ K+L + + R +SG Q++R+
Sbjct: 121 ------------------------VEEVAKILDIHHVLNH-----FPRELSGAQQQRVAL 151
Query: 307 GEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDD 366
+V L +DE + LD+ +++ L T ++ PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 367 IILLSDGQIVYQGPCELVLDFFESMGFKCPERKSVADFL 405
+ +L G++V G E D +++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 81.3 bits (200), Expect = 1e-17
Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 55/267 (20%)
Query: 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQR- 198
L ++S ++ G ++LGP +GKT L +AG SGR+ +G D+ + P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 199 TAAYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMK 258
A++ Q+ M V++ L F R + + +R +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT------------- 111
Query: 259 AAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALF 318
+ L ++ D +SGG+++R+ +V L
Sbjct: 112 ----------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 319 MDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 378
+DE + LD T + + +H N V+ + E + D I ++ DG+++
Sbjct: 151 LDEPLSALDPRTQENARE-MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 379 GPCELVLDFFESMGFKCPERKSVADFL 405
G E + F+ P VA F+
Sbjct: 210 GKPEEI--------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.9 bits (181), Expect = 4e-15
Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 16/203 (7%)
Query: 838 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISG-YPKKQETFTRI 896
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 897 SGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGL 956
+ QN P + V ++L + ++ + + +++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 957 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVV 1015
P LS +++R+ +A LV NP I+ +DEP S LD R + + TV+
Sbjct: 125 PLT--LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1016 CTIHQPSIDIFEAFDELFLMKRG 1038
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.9 bits (168), Expect = 3e-13
Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 56/265 (21%)
Query: 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTA- 200
+V +LLGP +GK+ L +AG + G V NG D+ P+R
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 201 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAA 260
++ Q ++V +A+ R R + E+A + A +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------------ 120
Query: 261 ATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMD 320
D +SGG+++R+ +V L +D
Sbjct: 121 -----------------------------DRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 321 EISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380
E + +D T ++ LR + + E L D++ ++ +G+IV +G
Sbjct: 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGK 210
Query: 381 CELVLDFFESMGFKCPERKSVADFL 405
+ + + VA+FL
Sbjct: 211 LKELFS---------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.1 bits (166), Expect = 4e-13
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 847 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIS-GNITISGYPKKQETFTRISGYCEQN 903
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 904 DIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963
P ++VY ++ Y V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLS 128
Query: 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV-ETGRTVVCTIHQPS 1022
+R+R+ +A LV P ++ +DEP S +D + ++M ++ E ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1023 IDIFEAFDELFLMKRG 1038
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 46.5 bits (109), Expect = 4e-06
Identities = 17/187 (9%), Positives = 31/187 (16%), Gaps = 35/187 (18%)
Query: 852 ALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVT 911
+ G G GKTTL+ + R + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIF-- 59
Query: 912 VYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLT 971
+ + F
Sbjct: 60 ----SSKFFTSKKLVGSYGVNVQYFE------------------------ELAIPILERA 91
Query: 972 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDE 1031
+I +DE + + VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1032 LFLMKRG 1038
+ +
Sbjct: 149 IRRLPGA 155
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 154 LLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEM 213
++ G P GKTTL+ + +L + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 214 TVRETLAFSARCQGVGSRYDML 235
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 42.3 bits (98), Expect = 9e-05
Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 3/137 (2%)
Query: 157 GPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216
+GKTTLL L L + R H ++ + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLK 276
+ A ++ + + + ++ F + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 277 VLGLDVCADTLVGDEMV 293
L +D + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 2/116 (1%)
Query: 144 SGIIKPGRMTLLLGPPSSGKTTLLL--ALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA 201
G I+ G +T + G +GKT + A+ QL F P+R A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
++ + ++ A + + + + A + D ++
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 132
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 0.001
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 143 VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL-------DSSLKVSGRVTYNGHDM-NEF 194
+ ++ G + L+ P +GK+ L L LA Q+ + +G V Y +
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 81
Query: 195 VPQRTAAYISQHDVH 209
+ R A +
Sbjct: 82 IHHRLHALGAHLSAE 96
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.7 bits (91), Expect = 0.001
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 4/117 (3%)
Query: 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVS---GRVTYNGHDMNEFVPQRTA 200
G ++ G +T L G +GK+ L LA L + G+ Y + F P R
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG-TFRPVRLV 86
Query: 201 AYISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFM 257
+ + + + A + D ++ + + I D + ++
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.001
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 144 SGIIKPGRMTLLLGPPSSGKTTLLL--ALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAA 201
G I+ +T G +GKT L + QL + G N F P R
Sbjct: 31 GGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 90
Query: 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKA 259
+ +V + AR + ++L +A + E L I + A
Sbjct: 91 IADRFNVDHDAVLDNV---LYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 145
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.002
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 918 YSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELV 977
+A L + E + + L K + G + L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 978 ANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033
+DE + LD + ++ + + +FE D L
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 39.3 bits (90), Expect = 0.002
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYI 203
G ++ +T G SGKT ++ L V Q A YI
Sbjct: 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL---QNPEFLFYDEEAVSKGEVAQPKAVYI 84
Query: 204 S 204
Sbjct: 85 D 85
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 38.4 bits (88), Expect = 0.003
Identities = 14/146 (9%), Positives = 24/146 (16%), Gaps = 6/146 (4%)
Query: 144 SGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYI 203
G + L G +GKT L+ E +
Sbjct: 20 GGGFFKDSIILATGATGTGKTLLVSRFVENA------CANKERAILFAYEESRAQLLRNA 73
Query: 204 SQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATE 263
+ EM + L D L + + + A
Sbjct: 74 YSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVS 133
Query: 264 GQEANVLTDYYLKVLGLDVCADTLVG 289
+
Sbjct: 134 NNAFRQFVIGVTGYAKQEEITGLFTN 159
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1326 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.6 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.3 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.23 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.84 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.79 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.54 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.34 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.29 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.0 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.86 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.36 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.22 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.15 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.06 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.86 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.44 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.39 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.37 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.35 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.27 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.17 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.09 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.05 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.05 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.96 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.84 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.84 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.81 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.75 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.72 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.72 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.63 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.61 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.59 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.59 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.58 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.53 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.49 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.38 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.3 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.29 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.16 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.13 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.12 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.01 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.93 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.89 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.85 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.81 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.79 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.79 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.73 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.73 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.71 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.71 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.7 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.66 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.64 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.58 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.56 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.55 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.52 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.51 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.48 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.47 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.42 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.39 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.38 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.29 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.26 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.26 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.25 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.18 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.17 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.14 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.14 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.11 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.07 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.04 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.97 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.95 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.94 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.92 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.92 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.9 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.86 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.83 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.76 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.76 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.75 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.75 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.69 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.62 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.6 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.59 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.59 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.58 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.56 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.54 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.49 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.44 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.42 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.39 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.39 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.39 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.37 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.36 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.35 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.34 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.34 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.3 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.28 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.27 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.27 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.27 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.26 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.25 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.23 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.19 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.13 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.11 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.1 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.98 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.87 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.85 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.84 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.83 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.82 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.78 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.78 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.71 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.68 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.66 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.55 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.54 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.46 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.4 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.35 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.34 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.32 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.17 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.15 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.07 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.07 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.04 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.97 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.97 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.93 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.69 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.66 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.63 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.63 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.56 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.47 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.45 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.42 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.36 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.33 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.21 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.14 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.03 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.02 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.02 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.0 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.98 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 90.95 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.89 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.75 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.75 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.7 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.64 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.58 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.56 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.5 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.46 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.44 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.39 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.34 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.33 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.31 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.23 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.23 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.15 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.14 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.13 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.13 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.1 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.09 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.08 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.05 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.03 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.03 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.02 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 89.98 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.93 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.79 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 89.76 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.71 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.66 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.63 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.57 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.54 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.46 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.44 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.43 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.4 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.39 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.35 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.33 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.29 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.21 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.19 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.14 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.13 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.1 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.1 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.09 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.04 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.01 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.94 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 88.89 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.87 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.85 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.85 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 88.81 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.81 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 88.77 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.72 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.72 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.63 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.61 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.58 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.55 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.42 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.4 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.4 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.39 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.37 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.36 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.36 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.34 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.29 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.29 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.21 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 88.2 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.15 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.14 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.14 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.12 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.09 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.09 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.05 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.01 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.01 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.98 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.93 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.88 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.87 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.86 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.78 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.73 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 87.67 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.67 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.65 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.62 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.43 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.41 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.4 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.36 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 87.35 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.35 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 87.32 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 87.22 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 87.21 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.16 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.08 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.05 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.02 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 86.97 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.95 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.91 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 86.9 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 86.86 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.86 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 86.83 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.81 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.77 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.76 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.72 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.65 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.65 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 86.61 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 86.56 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 86.49 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.45 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.41 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.39 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.34 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.29 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 86.26 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.22 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 86.15 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.14 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.98 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 85.9 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.83 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 85.74 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.65 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.63 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 85.52 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.5 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.49 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.42 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 85.42 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.41 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.37 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.22 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.18 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 85.17 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.17 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.09 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.77 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.73 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.62 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.59 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.56 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.54 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 84.44 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.4 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.19 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 84.16 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.1 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 84.07 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.74 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.69 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 83.65 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.6 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.54 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 83.54 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 83.42 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.37 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.25 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.24 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.22 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.2 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 83.17 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.15 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.95 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.93 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 82.85 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 82.74 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.71 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 82.3 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.17 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.12 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.97 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.88 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 81.77 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.75 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 81.64 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 81.52 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.43 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.42 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.21 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.18 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.13 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.77 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.62 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 80.37 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-47 Score=410.16 Aligned_cols=213 Identities=25% Similarity=0.373 Sum_probs=154.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
|+++||+++|+ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 46788887763 4679999999999999999999999999999999999987 46999999999875
Q ss_pred cc-cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 QE-TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~~-~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. ..+|.+|||+|++.+++.+||+||+.|+..++ ..++++.+++++++++.++|.+..|+.+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChh-----hCCHHHHH
Confidence 42 34577999999999999999999999987655 34456667789999999999999988864 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|++|||||||+|||+.++..|++.|+++.+ .|+|||++|||+. ++.++|||+++|++ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999999999999864 5999999999986 68888999999985 799999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.2e-47 Score=409.09 Aligned_cols=214 Identities=23% Similarity=0.353 Sum_probs=186.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+++|++++|+ ++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceec
Confidence 478899988773 4679999999999999999999999999999999999987 4699999999987
Q ss_pred Cc-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 889 KQ-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 889 ~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
.. ...+|.+|||+|++.+++.+||+||+.|.+.++ ..++++.+++++++++.++|.+..|+.+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 54 334567999999999999999999999977554 4677888889999999999999998876 46999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1046 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~ 1046 (1326)
|||+|||||+.+|+||+|||||+|||+.++..|++.|+++.++ |+|||++|||+. ++.++|||+++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999755 999999999986 68889999999996 79999998
Q ss_pred C
Q 046656 1047 L 1047 (1326)
Q Consensus 1047 ~ 1047 (1326)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.9e-46 Score=405.63 Aligned_cols=214 Identities=26% Similarity=0.338 Sum_probs=192.2
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+++||+++++ +..+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEe
Confidence 478899988773 4679999999999999999999999999999999999987 4699999999876
Q ss_pred Ccc-------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 046656 889 KQE-------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESG 961 (1326)
Q Consensus 889 ~~~-------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~ 961 (1326)
... ..+|.+|||+|++.++|.+||+||+.|+..++ ..+.++.+++++++++.++|.+..++.++ .
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----E 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----G
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----h
Confidence 321 12567999999999999999999999988765 45677888899999999999999888864 5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
||||||||++|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++|||++ ++...|||+++|++ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 67888999999995 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
+++.|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEEcCH
Confidence 9999985
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9.9e-47 Score=408.45 Aligned_cols=211 Identities=24% Similarity=0.354 Sum_probs=179.9
Q ss_pred cccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCC
Q 046656 132 TKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHI 210 (1326)
Q Consensus 132 ~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~ 210 (1326)
++++++++|+|||+.+++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++....+ +|.+|||+|++.++
T Consensus 14 k~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 90 (239)
T d1v43a3 14 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVW 90 (239)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC-----
T ss_pred EEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhc
Confidence 3445678999999999999999999999999999999999999998 9999999999876554 46799999999999
Q ss_pred CCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccC
Q 046656 211 GEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGD 290 (1326)
Q Consensus 211 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 290 (1326)
+++||+||+.|++++++... .+.+.+++++++.+||++..|
T Consensus 91 ~~ltv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~----- 131 (239)
T d1v43a3 91 PHMTVYENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLN----- 131 (239)
T ss_dssp -CCCHHHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT-----
T ss_pred ccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhc-----
Confidence 99999999999887654321 123345788999999998766
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEe
Q 046656 291 EMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILL 370 (1326)
Q Consensus 291 ~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 370 (1326)
+.+..|||||||||+|||||+.+|++|+|||||+|||+.++.++++.++++.+.. +++++.++|+.+++.++||||++|
T Consensus 132 ~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm 210 (239)
T d1v43a3 132 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVM 210 (239)
T ss_dssp SCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEE
T ss_pred CChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 5567899999999999999999999999999999999999999999999987644 566777899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 046656 371 SDGQIVYQGPCELVL 385 (1326)
Q Consensus 371 ~~G~iv~~G~~~~~~ 385 (1326)
++|+|+++|+++++.
T Consensus 211 ~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 211 NRGQLLQIGSPTEVY 225 (239)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999999984
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.7e-46 Score=406.82 Aligned_cols=216 Identities=26% Similarity=0.383 Sum_probs=192.6
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+++||++.|+. +...+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEe
Confidence 4788999988742 34679999999999999999999999999999999999887 4699999999876
Q ss_pred Cc------ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 046656 889 KQ------ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 889 ~~------~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~L 962 (1326)
.. ...+|.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.++|.+..|+.++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChh-----hC
Confidence 32 223567999999999999999999999986543 46778888899999999999999988875 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1041 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~ 1041 (1326)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.++|||+++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999654 999999999986 68889999999996 799
Q ss_pred EEEcCC
Q 046656 1042 IYVGPL 1047 (1326)
Q Consensus 1042 ~~~G~~ 1047 (1326)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEEcCH
Confidence 999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-47 Score=409.80 Aligned_cols=215 Identities=24% Similarity=0.355 Sum_probs=155.3
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCC
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHD 207 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d 207 (1326)
+++++++++++|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++.+..+ +|.+|||+|++
T Consensus 5 nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~ 81 (232)
T d2awna2 5 NVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSY 81 (232)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSC
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeecccc
Confidence 4455667788999999999999999999999999999999999999998 9999999999976654 46799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+++.+||+||+.|+..+++... .+.+.+++++++.+||++..|.
T Consensus 82 ~l~~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~- 126 (232)
T d2awna2 82 ALYPHLSVAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDR- 126 (232)
T ss_dssp CC-------------------------------------------------------CHHHHHHHHHHHHC---------
T ss_pred ccccchhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhCCChhhhhC-
Confidence 99999999999999877654311 1223457888999999987774
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.+..|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++.+.. +++++.++|+..++..+||||
T Consensus 127 ----~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a~~~~dri 201 (232)
T d2awna2 127 ----KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKI 201 (232)
T ss_dssp -----------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEE
T ss_pred ----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 456799999999999999999999999999999999999999999999987654 566777899999999999999
Q ss_pred EEecCCeEEEEcChhhHHH
Q 046656 368 ILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~~ 386 (1326)
++|++|+++++|+++++.+
T Consensus 202 ~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 202 VVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEEeCHHHHHh
Confidence 9999999999999999853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-46 Score=404.36 Aligned_cols=218 Identities=23% Similarity=0.290 Sum_probs=191.6
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
|+++||+++|+.. ....++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 5788998777532 123468999999999999999999999999999999999987 46999999999864
Q ss_pred cc------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 046656 890 QE------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLS 963 (1326)
Q Consensus 890 ~~------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LS 963 (1326)
.. .+++.+|||+|++.+++.+||+||+.|+..++ ..++++.+++++++|+.+||.+..|+.++ .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 31 23467999999999999999999999987654 34566777889999999999999888764 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 964 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 964 gGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
|||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++|||+. ++..+|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 67788999999996 7999
Q ss_pred EEcCCC
Q 046656 1043 YVGPLG 1048 (1326)
Q Consensus 1043 ~~G~~~ 1048 (1326)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
Confidence 999874
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.8e-46 Score=399.45 Aligned_cols=219 Identities=25% Similarity=0.384 Sum_probs=190.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
|+++||+++|+.. .....+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 5788998877532 123458999999999999999999999999999999999887 46999999999875
Q ss_pred ccc------c-cceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCC
Q 046656 890 QET------F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-LRQSLVGLPGESG 961 (1326)
Q Consensus 890 ~~~------~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~vg~~~~~~ 961 (1326)
... + ++.+|||+|++.++|.+||+||+.++..++.....+.+++.+++.++|+.++|.+ ..+..+. .
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~-----~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----Q 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----G
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChh-----h
Confidence 421 1 3469999999999999999999999887776666778888888999999999976 4666653 5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcE
Q 046656 962 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1040 (1326)
Q Consensus 962 LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~ 1040 (1326)
|||||||||+|||||+.+|+||||||||||||+.++..|++.|+++.++ |+|||++|||++ +.++|||+++|++ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999975 4578999999986 79
Q ss_pred EEEEcCC
Q 046656 1041 EIYVGPL 1047 (1326)
Q Consensus 1041 ~~~~G~~ 1047 (1326)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9998864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.1e-46 Score=404.45 Aligned_cols=214 Identities=26% Similarity=0.346 Sum_probs=187.5
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------c-cceEE
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------P-QRTAA 201 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~-~~~~~ 201 (1326)
++++.++++++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... + ++.+|
T Consensus 8 nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig 84 (240)
T d1g2912 8 DVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIA 84 (240)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEE
T ss_pred eEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccce
Confidence 3445556778999999999999999999999999999999999999998 999999998875332 1 36799
Q ss_pred EEccCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCc
Q 046656 202 YISQHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLD 281 (1326)
Q Consensus 202 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 281 (1326)
||+|++.+++.+||+||+.|+.+.++... .+.+.+++++++.+||+
T Consensus 85 ~v~Q~~~L~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~ 130 (240)
T d1g2912 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLT 130 (240)
T ss_dssp EECSCCCCCTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCG
T ss_pred ecccchhhcchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCh
Confidence 99999999999999999999987764321 12334578899999999
Q ss_pred ccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHH
Q 046656 282 VCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETY 361 (1326)
Q Consensus 282 ~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 361 (1326)
+..| +.++.|||||||||+|||||+.+|++|||||||+|||+.++.++++.++++.+.. +++|+.++|+.+++.
T Consensus 131 ~~~~-----~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~ 204 (240)
T d1g2912 131 ELLN-----RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAM 204 (240)
T ss_dssp GGTT-----CCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHH
T ss_pred hHhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc-CCEEEEEcCCHHHHH
Confidence 8776 4566799999999999999999999999999999999999999999999986644 667777999999999
Q ss_pred hhCCeEEEecCCeEEEEcChhhHH
Q 046656 362 DLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 362 ~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
++||||++|++|++++.|+++++.
T Consensus 205 ~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 205 TMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=6.6e-46 Score=399.40 Aligned_cols=210 Identities=24% Similarity=0.343 Sum_probs=184.7
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc-ceEEEEccCC
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-RTAAYISQHD 207 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d 207 (1326)
++++++++ .+|+||||.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.+..++ +.+|||+|++
T Consensus 6 nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~ 81 (229)
T d3d31a2 6 SLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (229)
T ss_dssp EEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeecccc
Confidence 34455544 4899999999999999999999999999999999999998 99999999999876554 5799999999
Q ss_pred CCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccc
Q 046656 208 VHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTL 287 (1326)
Q Consensus 208 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 287 (1326)
.+++.+||+||+.|+.+.++... ..+++++++.+||++..|.
T Consensus 82 ~l~~~~tV~enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~- 123 (229)
T d3d31a2 82 SLFPHMNVKKNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDR- 123 (229)
T ss_dssp CCCTTSCHHHHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTS-
T ss_pred ccCccccHHHHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhC-
Confidence 99999999999999887654321 1135667889999987764
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.+..|||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+. .+.+|+.++|+..++.++||||
T Consensus 124 ----~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv 198 (229)
T d3d31a2 124 ----NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRI 198 (229)
T ss_dssp ----CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEE
T ss_pred ----ChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhCCEE
Confidence 45679999999999999999999999999999999999999999999998664 4667777999999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|+++++|+++++.
T Consensus 199 ~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 199 AVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp EEESSSCEEEEECHHHHH
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999999984
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.6e-46 Score=402.66 Aligned_cols=208 Identities=21% Similarity=0.279 Sum_probs=183.0
Q ss_pred ccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC------ccceEEEEccCCC
Q 046656 135 KHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------PQRTAAYISQHDV 208 (1326)
Q Consensus 135 ~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~ 208 (1326)
++..+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .+|.+|||+|++.
T Consensus 16 g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~ 92 (242)
T d1oxxk2 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92 (242)
T ss_dssp GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSC
T ss_pred CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEecccc
Confidence 3567999999999999999999999999999999999999998 999999999875321 1457999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLV 288 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 288 (1326)
++|++||+||+.|+++..+... .+.+.+++++++.+||++.+|
T Consensus 93 L~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~--- 135 (242)
T d1oxxk2 93 LYPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLN--- 135 (242)
T ss_dssp CCTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTT---
T ss_pred ccccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhh---
Confidence 9999999999999987654321 123345788999999988776
Q ss_pred cCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 289 GDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 289 g~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
.++..|||||||||+|||||+.+|++|||||||+|||+.++.++++.++++.+.. +.+++.++|+..++.++||||+
T Consensus 136 --~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~ 212 (242)
T d1oxxk2 136 --HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVG 212 (242)
T ss_dssp --SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEE
T ss_pred --CChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHHhCCEEE
Confidence 4556799999999999999999999999999999999999999999999986654 5667779999999999999999
Q ss_pred EecCCeEEEEcChhhHH
Q 046656 369 LLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 369 lL~~G~iv~~G~~~~~~ 385 (1326)
+|++|+|++.|+++++.
T Consensus 213 vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 213 VLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-45 Score=397.59 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=185.7
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
|+++||+++|+ . .+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEecc
Confidence 56788888763 1 38999999999999999999999999999999999987 46999999999885
Q ss_pred c-ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 890 Q-ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 890 ~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
. ...+|.+|||+|++.++|.+||+||+.|+..++... . +++++++++.+++.++.|+.++ .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhcccc---H---HHHHHHHHHHhcchhhHhCChh-----hCCHHHhc
Confidence 4 234567999999999999999999999988766432 2 2458999999999999988864 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVE-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|.|||++||++. ++.+.|||+++|++ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999865 4999999999986 68889999999986 799999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-45 Score=396.19 Aligned_cols=206 Identities=22% Similarity=0.324 Sum_probs=183.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc------cceEEEEccCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP------QRTAAYISQHDVH 209 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 209 (1326)
..++|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l 93 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCC
T ss_pred eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhcccccccccccc
Confidence 456999999999999999999999999999999999999998 9999999999876543 2579999999999
Q ss_pred CCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccccccc
Q 046656 210 IGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVG 289 (1326)
Q Consensus 210 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 289 (1326)
++.+||+||+.|+.+..+... .+...+++++|+.+||++.+|
T Consensus 94 ~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~---- 135 (240)
T d3dhwc1 94 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHD---- 135 (240)
T ss_dssp CTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTS----
T ss_pred CCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhh----
Confidence 999999999999887765321 112345678899999998766
Q ss_pred CccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEE
Q 046656 290 DEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIIL 369 (1326)
Q Consensus 290 ~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 369 (1326)
..++.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++++.++|+..++..+||||++
T Consensus 136 -~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~v 213 (240)
T d3dhwc1 136 -SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 213 (240)
T ss_dssp -SCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEEE
T ss_pred -CChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 4566899999999999999999999999999999999999999999999987644 56677799999999999999999
Q ss_pred ecCCeEEEEcChhhH
Q 046656 370 LSDGQIVYQGPCELV 384 (1326)
Q Consensus 370 L~~G~iv~~G~~~~~ 384 (1326)
|++|+|++.|+++++
T Consensus 214 l~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 214 ISNGELIEQDTVSEV 228 (240)
T ss_dssp EETTEEEEEEETTTT
T ss_pred EECCEEEEECCHHHH
Confidence 999999999999988
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.4e-44 Score=390.95 Aligned_cols=213 Identities=24% Similarity=0.318 Sum_probs=191.9
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
|+++|+++++ +++++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|+++.
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecc
Confidence 6788888776 35789999999999999999999999999999999999987 46999999999864
Q ss_pred c--ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 046656 890 Q--ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQR 967 (1326)
Q Consensus 890 ~--~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqr 967 (1326)
. ...++.+|||||++.+++.+|+.||+.|.+.++. .+..+.++.++++++.++|.+..+..++ .||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred cChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHH
Confidence 3 2346789999999999999999999999877653 3566667789999999999999888875 5999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
||++|||||+++|+||||||||+|||+.++..++++|++++++|+|||++||+++ ++...|||+++|++ |++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999999999999999999999988999999999987 68888999999995 799999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-43 Score=389.63 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=187.2
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++||+++++ +..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEec
Confidence 67888887763 4679999999999999999999999999999999999887 46999999998864
Q ss_pred cc----------------cccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-ccc
Q 046656 890 QE----------------TFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-RQS 952 (1326)
Q Consensus 890 ~~----------------~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~ 952 (1326)
.. ..++.+|||+|++.+++.+||.||+.++.... ...+..+.++++.++++.++|.+. .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 21 23467999999999999999999999864322 234667778889999999999874 455
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhcee
Q 046656 953 LVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDEL 1032 (1326)
Q Consensus 953 ~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v 1032 (1326)
.++ .|||||||||+|||||+.+|+||||||||+|||+.++..|++.|++++++|+|||++|||+. ++..+||||
T Consensus 146 ~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Ccc-----cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEE
Confidence 443 59999999999999999999999999999999999999999999999988999999999986 678889999
Q ss_pred eEEecCcEEEEEcCC
Q 046656 1033 FLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1033 ~~l~~gg~~~~~G~~ 1047 (1326)
++|++ |++++.|++
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEEcCH
Confidence 99986 799999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.3e-43 Score=388.22 Aligned_cols=214 Identities=24% Similarity=0.349 Sum_probs=185.3
Q ss_pred ceEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCcc
Q 046656 808 YSLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYP 887 (1326)
Q Consensus 808 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~ 887 (1326)
.-++++||+++|+ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred eEEEEeeEEEEEC-------------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccc
Confidence 4678999988773 4679999999999999999999999999999999999987 469999999998
Q ss_pred CCccc---c-cceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCC
Q 046656 888 KKQET---F-TRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELV-ELKPLRQSLVGLPGESGL 962 (1326)
Q Consensus 888 ~~~~~---~-~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~vg~~~~~~L 962 (1326)
+.... . +..++|+||+..+++.+||+||+.+.+..+. ..+..++.++++++.+ ++.+..++.++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchh-----hC
Confidence 75422 1 2348999999999999999999988764432 2233445577777776 68888887764 59
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEE
Q 046656 963 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1042 (1326)
Q Consensus 963 SgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~ 1042 (1326)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.|||+++|++ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999988999999999986 68899999999996 7999
Q ss_pred EEcCC
Q 046656 1043 YVGPL 1047 (1326)
Q Consensus 1043 ~~G~~ 1047 (1326)
+.|+.
T Consensus 219 ~~g~~ 223 (240)
T d1ji0a_ 219 LEGKA 223 (240)
T ss_dssp EEEEH
T ss_pred EEcCH
Confidence 99986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.2e-43 Score=381.02 Aligned_cols=205 Identities=22% Similarity=0.295 Sum_probs=174.4
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc-------ceEEEEccCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ-------RTAAYISQHDV 208 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~d~ 208 (1326)
...+|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....+ +.+|||+|++.
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~ 93 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecchh
Confidence 456899999999999999999999999999999999999998 99999999998766432 35999999999
Q ss_pred CCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcc-ccccc
Q 046656 209 HIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDV-CADTL 287 (1326)
Q Consensus 209 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 287 (1326)
++|.+||+||+.|+...+..+.. + ..+....+.++|+.+||.+ .++
T Consensus 94 l~~~~tv~eni~~~~~~~~~~~~-~------------------------------~~~~~~~~~~~l~~~~L~~~~~~-- 140 (230)
T d1l2ta_ 94 LIPLLTALENVELPLIFKYRGAM-S------------------------------GEERRKRALECLKMAELEERFAN-- 140 (230)
T ss_dssp CCTTSCHHHHHHHHHHTCCSSCC-C------------------------------HHHHHHHHHHHHHHTTCCGGGTT--
T ss_pred hCcCccHHHHHhHHHHHhccCCC-C------------------------------HHHHHHHHHHHHHhhchhhhhhc--
Confidence 99999999999998876533211 0 0112234567789999975 344
Q ss_pred ccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 288 VGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 288 vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.++..|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+. .+++++.++|+.+++ ++||||
T Consensus 141 ---~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a-~~~drv 215 (230)
T d1l2ta_ 141 ---HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVA-RFGERI 215 (230)
T ss_dssp ---CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHHH-TTSSEE
T ss_pred ---CChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEECCCHHHH-HhCCEE
Confidence 456689999999999999999999999999999999999999999999998764 466677788998655 899999
Q ss_pred EEecCCeEEEEcCh
Q 046656 368 ILLSDGQIVYQGPC 381 (1326)
Q Consensus 368 ilL~~G~iv~~G~~ 381 (1326)
++|++|+|+++|+.
T Consensus 216 ~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 216 IYLKDGEVEREEKL 229 (230)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEEECCEEEEeccC
Confidence 99999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-43 Score=391.79 Aligned_cols=218 Identities=25% Similarity=0.272 Sum_probs=189.0
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
-++++||+.++ ++.++|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEE-------------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEec
Confidence 36788888776 34679999999999999999999999999999999999987 4599999999987
Q ss_pred Cccc----ccceEEEeecCCCCCCCCCHHHHHHHHHHhhc----------cCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 046656 889 KQET----FTRISGYCEQNDIHSPLVTVYESLLYSAWLRL----------RTEVDSETRKMFIEEIMELVELKPLRQSLV 954 (1326)
Q Consensus 889 ~~~~----~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~----------~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v 954 (1326)
.... .++.++|+||++.+++.+||+||+.++...+. ......++..+++.++++.+++.+..|+.+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 5422 23348999999999999999999998643221 112234455567899999999999998887
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeE
Q 046656 955 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 955 g~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
+ .|||||||||+|||||+.+|++|||||||+|||+.++..|++.|++++++|+|||+++|+++ ++.+.||||++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred h-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEE
Confidence 5 59999999999999999999999999999999999999999999999888999999999998 68899999999
Q ss_pred EecCcEEEEEcCCC
Q 046656 1035 MKRGGQEIYVGPLG 1048 (1326)
Q Consensus 1035 l~~gg~~~~~G~~~ 1048 (1326)
|++ |++++.|+.+
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EeC-CEEEEEecHH
Confidence 996 7999999863
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.5e-43 Score=379.55 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=174.7
Q ss_pred ceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc-cceEEEEccCCCCCCCCCHHHHHH
Q 046656 142 DVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP-QRTAAYISQHDVHIGEMTVRETLA 220 (1326)
Q Consensus 142 ~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 220 (1326)
|||+.++ ||+++|+||||||||||+++|+|+++|+ +|+|.+||.++....+ +|.+|||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999998 9999999999977655 467999999999999999999999
Q ss_pred hhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCCChhh
Q 046656 221 FSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGISGGQ 300 (1326)
Q Consensus 221 f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 300 (1326)
|+.+.. . + .+.+.+++++++.+||++..| +.+..|||||
T Consensus 93 ~~l~~~--~----------~------------------------~~~~~~v~~~l~~~gl~~~~~-----~~~~~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------R------------------------VERDRRVREMAEKLGIAHLLD-----RKPARLSGGE 131 (240)
T ss_dssp TTCTTS--C----------H------------------------HHHHHHHHHHHHTTTCTTTTT-----CCGGGSCHHH
T ss_pred hhhccc--C----------H------------------------HHHHHHHHHHHHhcCcHhhhh-----CChhhCCHHH
Confidence 975321 0 0 112335688899999988776 4566899999
Q ss_pred hHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeEEEEcC
Q 046656 301 KKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 380 (1326)
Q Consensus 301 kqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 380 (1326)
||||+|||||+.+|++|+|||||+|||+.++..+++.++++.+.. +++++.++|+..++.++||||++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~-g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999987654 5566678999999999999999999999999999
Q ss_pred hhhHHH
Q 046656 381 CELVLD 386 (1326)
Q Consensus 381 ~~~~~~ 386 (1326)
++++..
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999853
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-42 Score=378.44 Aligned_cols=216 Identities=25% Similarity=0.273 Sum_probs=187.9
Q ss_pred hhcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC--ccceEEEEcc
Q 046656 128 HILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV--PQRTAAYISQ 205 (1326)
Q Consensus 128 ~~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q 205 (1326)
++++++++++++|+|||+.+++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.+.. .++.++||||
T Consensus 6 ~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq 82 (238)
T d1vpla_ 6 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPE 82 (238)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeee
Confidence 35566778889999999999999999999999999999999999999998 999999999876432 2467999999
Q ss_pred CCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCccccc
Q 046656 206 HDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCAD 285 (1326)
Q Consensus 206 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 285 (1326)
++.+++++||+||+.|.+.+.+.. ..+....++.+++.+||.+..+
T Consensus 83 ~~~~~~~ltv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~ 128 (238)
T d1vpla_ 83 EAGAYRNMQGIEYLRFVAGFYASS----------------------------------SSEIEEMVERATEIAGLGEKIK 128 (238)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCC----------------------------------HHHHHHHHHHHHHHHCCGGGGG
T ss_pred ccccCCCccHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHhCCCHHHHh
Confidence 999999999999999987654321 0112334677899999988877
Q ss_pred ccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCC
Q 046656 286 TLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFD 365 (1326)
Q Consensus 286 t~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 365 (1326)
.. ++.|||||||||+||+||+++|++|||||||+|||+.++.++++.+++++. . +++|+.++|+.+++..+||
T Consensus 129 ~~-----~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~-g~tii~~tH~l~~~~~~~d 201 (238)
T d1vpla_ 129 DR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCD 201 (238)
T ss_dssp SB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCS
T ss_pred hh-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCC
Confidence 55 446999999999999999999999999999999999999999999999865 3 5677778999999999999
Q ss_pred eEEEecCCeEEEEcChhhHHHH
Q 046656 366 DIILLSDGQIVYQGPCELVLDF 387 (1326)
Q Consensus 366 ~vilL~~G~iv~~G~~~~~~~~ 387 (1326)
||++|++|+++++|+++++.+.
T Consensus 202 rv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 202 RIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp EEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.6e-43 Score=384.82 Aligned_cols=214 Identities=23% Similarity=0.294 Sum_probs=181.5
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCC-------------
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFV------------- 195 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------------- 195 (1326)
+++++++..++|+||||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....
T Consensus 7 nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~ 83 (258)
T d1b0ua_ 7 DLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQ 83 (258)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHH
T ss_pred EEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhH
Confidence 3445556778999999999999999999999999999999999999998 999999999875332
Q ss_pred ---ccceEEEEccCCCCCCCCCHHHHHHhhhh-hccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHH
Q 046656 196 ---PQRTAAYISQHDVHIGEMTVRETLAFSAR-CQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLT 271 (1326)
Q Consensus 196 ---~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~ 271 (1326)
.++.+|||+|++.+++.+||+||+.|+.. ..+.. + .+....+
T Consensus 84 ~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------~------------------------~~~~~~~ 129 (258)
T d1b0ua_ 84 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERA 129 (258)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHH
T ss_pred HHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCC----------H------------------------HHHHHHH
Confidence 12569999999999999999999998743 22110 0 1122346
Q ss_pred HHHHHHcCCcccccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Q 046656 272 DYYLKVLGLDVCADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVI 351 (1326)
Q Consensus 272 ~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii 351 (1326)
.++++.+||.+..+ ++++..|||||||||+|||+|+.+|++|||||||+|||+.++.+|++.|+++.+ . +++|+
T Consensus 130 ~~~l~~~~l~~~~~----~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~-g~til 203 (258)
T d1b0ua_ 130 LKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMV 203 (258)
T ss_dssp HHHHHHTTCCHHHH----TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEE
T ss_pred HHHHHHcCCchhhh----ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-c-CCceE
Confidence 77899999976432 345668999999999999999999999999999999999999999999999865 3 56677
Q ss_pred EEecChhhHHhhCCeEEEecCCeEEEEcChhhHH
Q 046656 352 SLLQPAPETYDLFDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 352 ~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
.++|+.+++..+||||++|++|+|+++|+++++.
T Consensus 204 ~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 204 VVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp EECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 7999999999999999999999999999999985
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7e-43 Score=377.23 Aligned_cols=193 Identities=23% Similarity=0.372 Sum_probs=174.1
Q ss_pred cceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCc-ccccceEEEeecCCCCCCCCCHHHHHHH
Q 046656 840 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQ-ETFTRISGYCEQNDIHSPLVTVYESLLY 918 (1326)
Q Consensus 840 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f 918 (1326)
||||++. ||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...+|.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 68999999999999999999999987 469999999998754 2345789999999999999999999998
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 046656 919 SAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 998 (1326)
Q Consensus 919 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~ 998 (1326)
+. + ..++.+++++++++++.++|.+..++.+. .|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCChh-----hCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 34567778889999999999999988874 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 999 IVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 999 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
.+++.|+++.++ |.|||++||+++ ++.+.|||+++|++ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 999999999755 999999999986 68889999999985 799999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.6e-42 Score=379.35 Aligned_cols=212 Identities=23% Similarity=0.315 Sum_probs=177.8
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc----ceEEEEc
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ----RTAAYIS 204 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 204 (1326)
++++.++.+++|+||||.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....++ ..++|++
T Consensus 11 ~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~ 87 (240)
T d1ji0a_ 11 SLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVP 87 (240)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEEC
T ss_pred eEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccC
Confidence 3445566778999999999999999999999999999999999999998 99999999998765432 3489999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHc-CCccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVL-GLDVC 283 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~ 283 (1326)
|+..+++.+||+||+.+++....... . .....+.+++.+ +|++.
T Consensus 88 q~~~l~~~ltv~en~~~~~~~~~~~~------~-----------------------------~~~~~~~~~~~~~~l~~~ 132 (240)
T d1ji0a_ 88 EGRRIFPELTVYENLMMGAYNRKDKE------G-----------------------------IKRDLEWIFSLFPRLKER 132 (240)
T ss_dssp SSCCCCTTSBHHHHHHGGGTTCCCSS------H-----------------------------HHHHHHHHHHHCHHHHTT
T ss_pred cccccCCcccHHHHHHHHHHhcCCHH------H-----------------------------HHHHHHHHHHHhhChHHH
Confidence 99999999999999998765432110 0 011123344444 56666
Q ss_pred ccccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 284 ADTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 284 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
.+.. +..|||||||||+|||||+.+|++|+|||||+|||+.++.++++.++++++ . +++|+.++|+.+++.++
T Consensus 133 ~~~~-----~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~~tH~l~~~~~~ 205 (240)
T d1ji0a_ 133 LKQL-----GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKV 205 (240)
T ss_dssp TTSB-----SSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHH
T ss_pred HhCc-----hhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHh
Confidence 6644 456999999999999999999999999999999999999999999999865 3 56777789999999999
Q ss_pred CCeEEEecCCeEEEEcChhhHH
Q 046656 364 FDDIILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 364 ~D~vilL~~G~iv~~G~~~~~~ 385 (1326)
||||++|++|++++.|+++++.
T Consensus 206 ~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 206 AHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999885
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-42 Score=381.73 Aligned_cols=227 Identities=24% Similarity=0.319 Sum_probs=187.3
Q ss_pred hcccccccceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc----ceEEEEc
Q 046656 129 ILTTKKKHLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ----RTAAYIS 204 (1326)
Q Consensus 129 ~~~~~~~~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~ 204 (1326)
+++++++.+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++
T Consensus 9 nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~ 85 (254)
T d1g6ha_ 9 NIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTF 85 (254)
T ss_dssp EEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECC
T ss_pred EEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccC
Confidence 3445566788999999999999999999999999999999999999998 99999999998766543 3499999
Q ss_pred cCCCCCCCCCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccc
Q 046656 205 QHDVHIGEMTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCA 284 (1326)
Q Consensus 205 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 284 (1326)
|++.+++++||+||+.++....+.... ... ......+ ...+....++.+++.+|+++..
T Consensus 86 Q~~~~~~~ltv~enl~~~~~~~~~~~~-------~~~-~~~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~ 144 (254)
T d1g6ha_ 86 QTPQPLKEMTVLENLLIGEICPGESPL-------NSL-FYKKWIP-------------KEEEMVEKAFKILEFLKLSHLY 144 (254)
T ss_dssp CCCGGGGGSBHHHHHHGGGTSTTSCHH-------HHH-HHCSSCC-------------CCHHHHHHHHHHHHHTTCGGGT
T ss_pred CccccCCCCeeeeeeeehhhhccccch-------hhh-hhhcccc-------------cHHHHHHHHHHHHHhcCcchhc
Confidence 999999999999999998655432110 000 0000001 1112234567789999999887
Q ss_pred cccccCccccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhC
Q 046656 285 DTLVGDEMVRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLF 364 (1326)
Q Consensus 285 dt~vg~~~~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 364 (1326)
|..++ .|||||||||+|||||+.+|++|||||||+|||+.++.+|++.++++.. .+++|+.++|+.+++.++|
T Consensus 145 ~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~ 217 (254)
T d1g6ha_ 145 DRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYI 217 (254)
T ss_dssp TSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGC
T ss_pred cCchh-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhC
Confidence 76554 6999999999999999999999999999999999999999999999854 4677788999999999999
Q ss_pred CeEEEecCCeEEEEcChhhHHH
Q 046656 365 DDIILLSDGQIVYQGPCELVLD 386 (1326)
Q Consensus 365 D~vilL~~G~iv~~G~~~~~~~ 386 (1326)
|||++|++|+++++|+++|+.+
T Consensus 218 Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 218 DHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp SEEEEEETTEEEEEEESHHHHH
T ss_pred CEEEEEeCCEEEEEecHHHHhh
Confidence 9999999999999999988643
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-42 Score=375.65 Aligned_cols=211 Identities=26% Similarity=0.412 Sum_probs=174.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+|+||+|+|+. +.+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.+||+++
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CeEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEe
Confidence 3789999998842 34579999999999999999999999999999999999887 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELK-------PLRQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~vg~~~ 958 (1326)
.. ..+++.+|||+|++.+++ .||+||+.|+. ...+.+ .++++++..++. .-.++.++..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHH----HHHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred cccchhhhhceEEEEecccccCC-ccccccccccC-----ccccHH----HHHHHHHHHhhHHHHHhhhcchhhhcCCC-
Confidence 54 346778999999987764 69999998742 122322 244455554443 2334555543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+..|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|+|++||+++ ..+.||+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 899999999986 3477999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999996
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9e-43 Score=381.92 Aligned_cols=210 Identities=27% Similarity=0.421 Sum_probs=173.7
Q ss_pred EEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCC
Q 046656 810 LTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKK 889 (1326)
Q Consensus 810 l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~ 889 (1326)
++++||+|+|+ +.+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 68999999885 23469999999999999999999999999999999999987 45899999999875
Q ss_pred c---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCC
Q 046656 890 Q---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKP-------LRQSLVGLPGE 959 (1326)
Q Consensus 890 ~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~vg~~~~ 959 (1326)
. ..+++.+|||+|++.+++. |++||+.++.. ...+.+ .++++++..++.+ ..++.+|.. +
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccchh----hHHHHHHHHHhhhhhccCcccccccccCC-C
Confidence 4 4567889999999988875 99999976421 122222 2445555555433 334455543 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 960 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.+||||||||++|||||+++|+|||||||||+||+.++..|++.|+++. +|+|||++||+++ ..+.||+|++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 4799999999999999999999999999999999999999999999986 4899999999975 4467999999995 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
++++.|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
Confidence 99999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-41 Score=369.15 Aligned_cols=209 Identities=25% Similarity=0.375 Sum_probs=168.8
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+.+|+|||+.|++||.++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+| +
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-N 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-T
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-C
Confidence 456999999999999999999999999999999999999998 9999999999987654 46899999998765 6
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+|||.|+..... . .++....+.+++ .. ..-.+....+|.+|. .
T Consensus 91 ~Ti~eNi~~~~~~~~----~---~~~~~~~~~~~~------------------------~~--~i~~~~~~~~t~i~~-~ 136 (241)
T d2pmka1 91 RSIIDNISLANPGMS----V---EKVIYAAKLAGA------------------------HD--FISELREGYNTIVGE-Q 136 (241)
T ss_dssp SBHHHHHCTTSTTCC----H---HHHHHHHHHHTC------------------------HH--HHTTSTTGGGSBCST-T
T ss_pred ccccccccccCcccc----H---HHHHHHHHHHhh------------------------HH--HHHhhhcchhhhcCC-C
Confidence 799999998642110 0 111111111000 01 122356677888885 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+|||||+.+|+||+||||||+||+.++.+|++.|+++.+ +.|+|+++|.... ...||+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~-~~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK---GRTVIIIAHRLST-VKNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT---TSEEEEECSSGGG-GTTSSEEEEEET
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC---CCEEEEEECCHHH-HHhCCEEEEEEC
Confidence 578999999999999999999999999999999999999999999998743 4556668888754 578999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+|+++|++++++.
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-41 Score=372.15 Aligned_cols=216 Identities=24% Similarity=0.330 Sum_probs=173.8
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+|+||+|+|+.. .++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEec
Confidence 59999999998532 23569999999999999999999999999999999999987 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHH-----HHHHHHHHcCCcccccccccCCCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKM-----FIEEIMELVELKPLRQSLVGLPGES 960 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~-----~v~~~l~~l~l~~~~~~~vg~~~~~ 960 (1326)
.. ..+++.++||+|++.+++ .||+||+.|+.. .........+ ...+.++ ++.+-.++.++. .+.
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhc----ccchHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCc
Confidence 54 345678999999998875 699999988532 1122222111 1112222 333334555553 235
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEecCc
Q 046656 961 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1039 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gg 1039 (1326)
.||||||||++|||||+++|+||+||||||+||+.++..|++.|+++.++ |+|||++||+++ ..+.||||++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998654 899999999975 4577999999985 7
Q ss_pred EEEEEcCC
Q 046656 1040 QEIYVGPL 1047 (1326)
Q Consensus 1040 ~~~~~G~~ 1047 (1326)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-41 Score=374.01 Aligned_cols=211 Identities=25% Similarity=0.382 Sum_probs=177.3
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+|+||+|+|+. ..+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 16 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 82 (255)
T d2hyda1 16 RIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 82 (255)
T ss_dssp CEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCEEc
Confidence 6999999998852 23569999999999999999999999999999999999887 4699999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
.. ..+++.++||+|++.+++ .||+|||.|+. ..... +.++++++..++.+. .++.++..
T Consensus 83 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~- 151 (255)
T d2hyda1 83 KDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER- 151 (255)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG-
T ss_pred ccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC-----cCCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC-
Confidence 54 346788999999987765 69999998752 12222 235677777777543 34455542
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++.+ ++|||++||+++ ....||+|++|++
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~- 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIEN- 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEET-
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 347999999999999999999999999999999999999999999999864 899999999986 3578999999985
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 228 G~iv~~G~~ 236 (255)
T d2hyda1 228 GHIVETGTH 236 (255)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 899999996
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-41 Score=371.83 Aligned_cols=212 Identities=20% Similarity=0.355 Sum_probs=171.0
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
++.+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+| +
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~ 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-G 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-S
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhcccccccc-C
Confidence 456999999999999999999999999999999999999998 9999999999877654 36899999999876 5
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+||+.|+...... . .+.....+.. ... ...-+|++..+|.++. .
T Consensus 102 ~tv~eni~~g~~~~~~---~---~~~~~~~~~~------------------------~~~--~~i~~l~~g~~~~i~~-~ 148 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKPT---M---EEITAAAVKS------------------------GAH--SFISGLPQGYDTEVDE-A 148 (251)
T ss_dssp SBHHHHHHCSCSSCCC---H---HHHHHHHHHH------------------------TCH--HHHHTSTTGGGCBCCS-S
T ss_pred cchhhhhhhhhcccch---H---HHHHHHHHHH------------------------HHH--HHHHhccccchhhHhc-c
Confidence 6999999997432110 0 0111100000 001 1123566778888874 5
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+|||||+.+|+|++||||||+||+.+..+|++.|+++.+.. ++++++++|+.. ..+.||+|++|++
T Consensus 149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~-~~Tvi~itH~l~-~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY-SRSVLLITQHLS-LVEQADHILFLEG 226 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGG-GCEEEEECSCHH-HHHTCSEEEEEET
T ss_pred CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhc-CCEEEEEeCCHH-HHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999876543 556666888876 4577999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+|+++|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.9e-41 Score=371.28 Aligned_cols=212 Identities=24% Similarity=0.328 Sum_probs=175.7
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.|+|+||+|.|+. ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+||.++
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCccc
Confidence 5899999998852 23469999999999999999999999999999999999887 4599999999987
Q ss_pred Cc---ccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 046656 889 KQ---ETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPL-------RQSLVGLPG 958 (1326)
Q Consensus 889 ~~---~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~vg~~~ 958 (1326)
.. ..+++.++||+|++.++. .|+++|+.++. +...+. +.++++++..++.+. .++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~----~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred chhhhhhhhheEEEEeeccccCC-cchhhhhhhcC----cccCCH----HHHHHHHHHHhHHHHHHhccccchhhhcCC-
Confidence 54 346678999999987765 59999998752 122232 235566666665443 34455542
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecC
Q 046656 959 ESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRG 1038 (1326)
Q Consensus 959 ~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1038 (1326)
+.+|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++.+ |+|||++||+++ ..+.||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 899999999986 3477999999995
Q ss_pred cEEEEEcCC
Q 046656 1039 GQEIYVGPL 1047 (1326)
Q Consensus 1039 g~~~~~G~~ 1047 (1326)
|+++..|+.
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 799999996
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.3e-42 Score=374.20 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=168.1
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
.+++|+|||+.+++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+.
T Consensus 14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 90 (242)
T d1mv5a_ 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90 (242)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc
Confidence 356999999999999999999999999999999999999998 9999999999876543 4679999999887764
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
||+||+.++...... . .+.....+.++.. -....+.+..+|.+|+.
T Consensus 91 -ti~eNi~~~~~~~~~--~----~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~i~~~- 136 (242)
T d1mv5a_ 91 -TIRENLTYGLEGDYT--D----EDLWQVLDLAFAR--------------------------SFVENMPDQLNTEVGER- 136 (242)
T ss_dssp -EHHHHTTSCTTSCSC--H----HHHHHHHHHHTCT--------------------------TTTTSSTTGGGCEESTT-
T ss_pred -chhhheecccccccc--h----hhHHHHHHHHHhh--------------------------hhhccCcccccccccCC-
Confidence 999999886432110 0 0111110100000 01123556778888854
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
...|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ +.++++++|+...+ ..||+|++|++
T Consensus 137 g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~-~~~D~i~vl~~ 212 (242)
T d1mv5a_ 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK---GRTTLVIAHRLSTI-VDADKIYFIEK 212 (242)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT---TSEEEEECCSHHHH-HHCSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC---CCEEEEEECCHHHH-HhCCEEEEEEC
Confidence 568999999999999999999999999999999999999999999998753 45566688887655 56999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+|+++|+++++++
T Consensus 213 G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 213 GQITGSGKHNELVA 226 (242)
T ss_dssp TEECCCSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999874
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.9e-40 Score=363.48 Aligned_cols=209 Identities=23% Similarity=0.373 Sum_probs=168.5
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
..++|+|||+.|++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++.+... ++.++||+|++.+| +
T Consensus 30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 105 (255)
T d2hyda1 30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-S 105 (255)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-S
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-C
Confidence 356999999999999999999999999999999999999998 9999999999877653 46899999988766 5
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.||+|||.|+.... . ..++.+..+.+++ .. ....|+...||.+|+ .
T Consensus 106 ~Ti~eNi~~g~~~~---~----~~~~~~al~~~~l------------------------~~--~i~~lp~gl~t~i~~-~ 151 (255)
T d2hyda1 106 DTVKENILLGRPTA---T----DEEVVEAAKMANA------------------------HD--FIMNLPQGYDTEVGE-R 151 (255)
T ss_dssp SBHHHHHGGGCSSC---C----HHHHHHHHHHTTC------------------------HH--HHHTSTTGGGCBCCG-G
T ss_pred CCHHHHHhccCcCC---C----HHHHHHHHHHhCC------------------------HH--HHHhccccccchhcC-C
Confidence 79999999863211 0 0111111111100 01 112467788999986 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
...|||||||||+|||||+.+|+|++||||||+||+.+...|++.|+++.+ ++ |+|.++|.... ...||+|++|++
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~-TvI~itH~~~~-~~~~D~ii~l~~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DR-TTLIVAHRLST-ITHADKIVVIEN 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TS-EEEEECSSGGG-TTTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CC-EEEEEeCCHHH-HHhCCEEEEEEC
Confidence 568999999999999999999999999999999999999999999998743 34 55567887764 578999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+|++.|+++++++
T Consensus 228 G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 228 GHIVETGTHRELIA 241 (255)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.3e-40 Score=363.89 Aligned_cols=210 Identities=22% Similarity=0.371 Sum_probs=167.9
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCc---cceEEEEccCCCCCCC
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVP---QRTAAYISQHDVHIGE 212 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 212 (1326)
+.++|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.++ .
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 102 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-N 102 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-S
T ss_pred CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccC-C
Confidence 346999999999999999999999999999999999999998 9999999999887654 35799999988755 6
Q ss_pred CCHHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcc
Q 046656 213 MTVRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEM 292 (1326)
Q Consensus 213 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 292 (1326)
.|+++|+.++.... . . . .++.+..+.++ ....++. |+...+|.+|+ .
T Consensus 103 ~ti~~n~~~~~~~~-~-~-~---~~i~~a~~~~~------------------------l~~~i~~--l~~gl~t~~~~-~ 149 (253)
T d3b60a1 103 DTVANNIAYARTEE-Y-S-R---EQIEEAARMAY------------------------AMDFINK--MDNGLDTIIGE-N 149 (253)
T ss_dssp SBHHHHHHTTTTSC-C-C-H---HHHHHHHHTTT------------------------CHHHHHH--STTGGGSBCCT-T
T ss_pred cchhhhhhhcCccc-C-C-H---HHHHHHHHHHh------------------------HHHHHHh--ccccchhhhcC-C
Confidence 79999999863211 0 0 0 11111111100 0111222 55567888885 4
Q ss_pred ccCCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 293 VRGISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
+..|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|+++|+...+ ..||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~---~~Tvi~itH~l~~~-~~~D~v~vl~~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIAHRLSTI-EQADEIVVVED 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT---TSEEEEECSCGGGT-TTCSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc---CCEEEEEECCHHHH-HhCCEEEEEEC
Confidence 678999999999999999999999999999999999999999999998743 45566688887654 78999999999
Q ss_pred CeEEEEcChhhHHH
Q 046656 373 GQIVYQGPCELVLD 386 (1326)
Q Consensus 373 G~iv~~G~~~~~~~ 386 (1326)
|+|+++|+++++++
T Consensus 226 G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 226 GIIVERGTHSELLA 239 (253)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999874
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-38 Score=347.28 Aligned_cols=194 Identities=22% Similarity=0.350 Sum_probs=167.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcc---cccceEEEeecCCCCCCCCCHH
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQE---TFTRISGYCEQNDIHSPLVTVY 913 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gyv~Q~~~~~~~~Tv~ 913 (1326)
+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|.++... ..+...+|++|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 6999999999999999999999999999999999753 479999999986432 2344579999988777778999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 046656 914 ESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVA-------NPSIIFMD 986 (1326)
Q Consensus 914 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~-------~p~illLD 986 (1326)
+++.+... .+.+.+.++++++.+++.+..++.++ .||||||||++|||+|++ +|+||+||
T Consensus 91 ~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc--------hhhHHHHHHHHHHhcCCHhHhCcChh-----hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 99876421 11234568899999999998887764 599999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCCC
Q 046656 987 EPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1048 (1326)
Q Consensus 987 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~~ 1048 (1326)
|||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.|||+++|++ |++++.|+.+
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~ 217 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 217 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999989999999999987 68899999999985 7999999863
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.5e-38 Score=349.79 Aligned_cols=199 Identities=21% Similarity=0.296 Sum_probs=158.4
Q ss_pred cceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCH
Q 046656 136 HLTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTV 215 (1326)
Q Consensus 136 ~~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 215 (1326)
.+++|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.++| +++||+|++++++ .||
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv 113 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTI 113 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccC-cee
Confidence 357999999999999999999999999999999999999998 99999998 4899999988775 599
Q ss_pred HHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccC
Q 046656 216 RETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRG 295 (1326)
Q Consensus 216 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 295 (1326)
+||+.|+..... .......+.+ +.......+....++.+|. ...+
T Consensus 114 ~eni~~~~~~~~--------~~~~~~~~~~--------------------------~~~~~i~~l~~~~~~~~~~-~~~~ 158 (281)
T d1r0wa_ 114 KENIIFGVSYDE--------YRYKSVVKAC--------------------------QLQQDITKFAEQDNTVLGE-GGVT 158 (281)
T ss_dssp HHHHTTTSCCCH--------HHHHHHHHHT--------------------------TCHHHHTTSTTGGGCEECT-TCTT
T ss_pred eccccccccccc--------hHHHHHHHHH--------------------------HhHHHHHhchhhhhhhhhh-hccC
Confidence 999998643210 0000000000 0112334566677888874 4567
Q ss_pred CChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCeE
Q 046656 296 ISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQI 375 (1326)
Q Consensus 296 LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 375 (1326)
|||||||||+|||||+.+|+||+|||||++||+.+..++++.+.... ..+.++|+++|+.+ ....||+|++|++|++
T Consensus 159 LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~--~~~~tvi~itH~~~-~l~~aDrI~vl~~G~i 235 (281)
T d1r0wa_ 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL--MANKTRILVTSKME-HLRKADKILILHQGSS 235 (281)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC--TTTSEEEEECSCHH-HHHTCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh--hCCCEEEEEechHH-HHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999998644322 23445566788774 5678999999999999
Q ss_pred EEEcChhhHHH
Q 046656 376 VYQGPCELVLD 386 (1326)
Q Consensus 376 v~~G~~~~~~~ 386 (1326)
+++|+++++..
T Consensus 236 ~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 236 YFYGTFSELQS 246 (281)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHhc
Confidence 99999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.6e-38 Score=351.29 Aligned_cols=186 Identities=19% Similarity=0.341 Sum_probs=151.9
Q ss_pred eEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHH
Q 046656 835 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYE 914 (1326)
Q Consensus 835 ~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E 914 (1326)
+++|+||||+|++||++||+||||||||||+++|+|... +.+|.|.++| .++|++|++.+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG----------RVSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS----------CEEEECSSCCCCS-EEHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECC----------EEEEEeccccccC-ceeec
Confidence 579999999999999999999999999999999999987 4699999998 3799999988876 49999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHcC-------CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 046656 915 SLLYSAWLRLRTEVDSETRKMFIEEIMELVE-------LKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDE 987 (1326)
Q Consensus 915 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDE 987 (1326)
|+.|+.. .+.. ..+++++..+ +.+..++.++.. +.+|||||||||+|||||+++|+||||||
T Consensus 116 ni~~~~~------~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGVS------YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred ccccccc------ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 9987531 1222 1334444443 333344555432 34699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 988 PTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 988 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
|||+||+.+...+++.+.+....|+|+|++||+++ ..+.||||++|++ |++++.|+.
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~-G~i~~~Gt~ 241 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQ-GSSYFYGTF 241 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECH
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999988765444456899999999974 5678999999985 799999986
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.9e-36 Score=323.15 Aligned_cols=195 Identities=21% Similarity=0.298 Sum_probs=161.5
Q ss_pred eEEEecccceeccchhhhccccccCceEeeecceeEEeCCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccC
Q 046656 809 SLTFDDVTYSADMPKEMKLKGVHEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPK 888 (1326)
Q Consensus 809 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~ 888 (1326)
.++++|+++.++ +++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEeh
Confidence 478899998763 359999999999999999999999999999999999887 5699999999987
Q ss_pred CcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 046656 889 KQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLRTEVDSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRK 968 (1326)
Q Consensus 889 ~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrq 968 (1326)
.. .+..++|++|+..+...+|++|++.+.+.++.. ..+. +.+.+.++.+++.++.+ .++ .|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~-~~~-----~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLKK-KLG-----ELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTTS-BGG-----GSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCccccc-ccC-----cCCCcHHH
Confidence 53 456789999999999999999999987766532 2222 23677888888876543 333 59999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCcHHHHHHhceeeEEec
Q 046656 969 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVET-GRTVVCTIHQPSIDIFEAFDELFLMKR 1037 (1326)
Q Consensus 969 rl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1037 (1326)
|++|||+|+.+|+++||||||+|||+.++..+++.|+++.++ |.+||+++|+. ++||++.+|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999999999999999999999999999999998765 44444444443 46999988865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-36 Score=329.49 Aligned_cols=198 Identities=25% Similarity=0.335 Sum_probs=167.8
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCcc---ceEEEEccCCCCCCCCC
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQ---RTAAYISQHDVHIGEMT 214 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 214 (1326)
++|+|||+.|++||+++|+||||||||||+++|+|.. |+ +|+|.++|+++.....+ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 3699999999999999999999999999999999975 44 89999999988665443 35799999877667789
Q ss_pred HHHHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCcccc
Q 046656 215 VRETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVR 294 (1326)
Q Consensus 215 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 294 (1326)
+++++.++..-+ .....++++++.++|++..+. .++
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~-----~~~ 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGR-----STN 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTS-----BGG
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCc-----Chh
Confidence 999998753211 011234667888999877764 445
Q ss_pred CCChhhhHHHHHHHHhhc-------CCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeE
Q 046656 295 GISGGQKKRLTTGEMMVG-------PALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDI 367 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~-------~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 367 (1326)
.|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.++++.. .+++|+.++|+.+++.++||||
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~--~g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH--TTCEEEECCCCHHHHHHHCSBC
T ss_pred hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHCCEE
Confidence 799999999999999986 6799999999999999999999999999865 3667777899999999999999
Q ss_pred EEecCCeEEEEcChhhHH
Q 046656 368 ILLSDGQIVYQGPCELVL 385 (1326)
Q Consensus 368 ilL~~G~iv~~G~~~~~~ 385 (1326)
++|++|+++++|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999999884
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.2e-34 Score=306.98 Aligned_cols=184 Identities=18% Similarity=0.247 Sum_probs=152.1
Q ss_pred ceeecceeEEEeCceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCCCCHH
Q 046656 137 LTILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGEMTVR 216 (1326)
Q Consensus 137 ~~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 216 (1326)
+++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+. +..++|++|+..+...+|++
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~ 88 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVE 88 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHH
T ss_pred CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHH
Confidence 46999999999999999999999999999999999999998 99999999988653 46799999999988999999
Q ss_pred HHHHhhhhhccCCccchhhhHhHHHHHHhCCCCchhHHHHHHHhhhhhHHHHHHHHHHHHHcCCcccccccccCccccCC
Q 046656 217 ETLAFSARCQGVGSRYDMLTELARREKEAGIKPDLFIDVFMKAAATEGQEANVLTDYYLKVLGLDVCADTLVGDEMVRGI 296 (1326)
Q Consensus 217 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~pd~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 296 (1326)
|++.+.+...+.... ...+...++.+++.+.. +.+..|
T Consensus 89 ~~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~~------~~~~~L 126 (200)
T d1sgwa_ 89 DYLKAVASLYGVKVN------------------------------------KNEIMDALESVEVLDLK------KKLGEL 126 (200)
T ss_dssp HHHHHHHHHTTCCCC------------------------------------HHHHHHHHHHTTCCCTT------SBGGGS
T ss_pred HHHHHHHHhcCCccC------------------------------------HHHHHHHHHHcCCcccc------cccCcC
Confidence 999987765543211 00123345666664422 234579
Q ss_pred ChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecC
Q 046656 297 SGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSD 372 (1326)
Q Consensus 297 SGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 372 (1326)
||||||||+||++|+.+|++++|||||+|||+.++..+++.++++.+. ++++|++.||+. ++||.+.+|.+
T Consensus 127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 999999999999999999999999999999999999999999998764 467777666654 57999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=2e-13 Score=141.38 Aligned_cols=160 Identities=13% Similarity=0.010 Sum_probs=97.0
Q ss_pred EEEEeccCCCChhhHHhhhcCCCCCCeeEEEEEEcCccCCcccccceEEEeecCCCCCCCCCHHHHHHHHHHhhcc-CCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKTGGYISGNITISGYPKKQETFTRISGYCEQNDIHSPLVTVYESLLYSAWLRLR-TEV 928 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~~Tv~E~l~f~~~lr~~-~~~ 928 (1326)
.++|+||||||||||+++|+|... +..|.+.+.+.+...... ..++..+...........+.... ..+.. ...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 75 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSSKFFTS--KKLVGSYGV 75 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCC--SSEETTEEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhhhhhhh--hhhhhhhhc
Confidence 489999999999999999999776 347888888765322111 11221111000000000000000 00000 000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 046656 929 DSETRKMFIEEIMELVELKPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTV 1008 (1326)
Q Consensus 929 ~~~~~~~~v~~~l~~l~l~~~~~~~vg~~~~~~LSgGqrqrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1008 (1326)
... ...+|+|+++|.++++++..+|++|++|||+...+ ......+.+.+..
T Consensus 76 ~~~---------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l 126 (178)
T d1ye8a1 76 NVQ---------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIM 126 (178)
T ss_dssp CHH---------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHH
T ss_pred Ccc---------------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHh
Confidence 000 01379999999999999999999999999854433 3344555666654
Q ss_pred h-cCCEEEEEecCCcHHHHHHhceeeEEecCcEEEEEcCC
Q 046656 1009 E-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1047 (1326)
Q Consensus 1009 ~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gg~~~~~G~~ 1047 (1326)
+ .+.|+|+++|+.+ ....+|++..+.+ |+++.-++.
T Consensus 127 ~~~~~~il~~~h~~~--~~~~~~~i~~~~~-~~i~~v~~~ 163 (178)
T d1ye8a1 127 HDPNVNVVATIPIRD--VHPLVKEIRRLPG-AVLIELTPE 163 (178)
T ss_dssp TCTTSEEEEECCSSC--CSHHHHHHHTCTT-CEEEECCTT
T ss_pred ccCCCEEEEEEccHH--HHHhhceEEEEeC-CEEEEECCc
Confidence 4 4899999999865 4567899999874 788776653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.30 E-value=4.1e-14 Score=146.68 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=60.7
Q ss_pred CCChhhhHHHHHHHHhhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEEEecCCe
Q 046656 295 GISGGQKKRLTTGEMMVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDGQ 374 (1326)
Q Consensus 295 ~LSGGqkqRvsia~al~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 374 (1326)
.+|+|+++|.++++++..+|+++++|||.... .....+.+.+.+.... .+++++.++|.. +...++|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~-~~~~il~~~h~~-~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHD-PNVNVVATIPIR-DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTC-TTSEEEEECCSS-CCSHHHHHHHTCTTCE
T ss_pred hhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhcc-CCCEEEEEEccH-HHHHhhceEEEEeCCE
Confidence 47999999999999999999999999985443 3345566666665443 345555555554 4567889999999999
Q ss_pred EEEEcC
Q 046656 375 IVYQGP 380 (1326)
Q Consensus 375 iv~~G~ 380 (1326)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
Confidence 986543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=3.7e-08 Score=110.36 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeE
Q 046656 960 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFL 1034 (1326)
Q Consensus 960 ~~LSgGqrqrl~ia~aL----~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1034 (1326)
..+|+|||+.+.++..+ ..+|+++++|||-++|||.....+.+.|++..+ +.-||+|||.|. +.+.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 35899999998887764 346789999999999999999999999998864 678999999885 5688898866
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=2e-07 Score=104.17 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=60.2
Q ss_pred ccCCChhhhHHHHHHHH----hhcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 293 VRGISGGQKKRLTTGEM----MVGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~a----l~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
...+|+|||+...++.. ...+++++++|||-++||+.....+.+.|++.+. .+-+++. .|+|++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~Qviit-THsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFIVI-THNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEEEE-CCCTTGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc---CCEEEEE-ECCHHHHHhcccEE
Confidence 55799999999887644 3457789999999999999999999999998753 3444433 44568889999996
Q ss_pred E--ecCC
Q 046656 369 L--LSDG 373 (1326)
Q Consensus 369 l--L~~G 373 (1326)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=3e-07 Score=107.33 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceeeEE
Q 046656 961 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELFLM 1035 (1326)
Q Consensus 961 ~LSgGqrqrl~ia~aL----~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1035 (1326)
.||||||.++++|..+ ..++++++||||+++||+..+..+.+.|+++...+.-+|+|||+| .+.+.+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 4899999998887554 356779999999999999999999999998865566799999997 478889997755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=9.8e-06 Score=94.04 Aligned_cols=75 Identities=17% Similarity=0.288 Sum_probs=59.7
Q ss_pred ccCCChhhhHHHHHHHHh----hcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhhCCeEE
Q 046656 293 VRGISGGQKKRLTTGEMM----VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDLFDDII 368 (1326)
Q Consensus 293 ~~~LSGGqkqRvsia~al----~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 368 (1326)
...+|||||.++++|-.+ +.++++++||||+++||+..+..+.+.|++++. ..+-+|+++|. |++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iTH~-~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEeCC-HHHHHhcccEE
Confidence 356899999998887433 467789999999999999999999999988643 34556656665 47899999987
Q ss_pred Ee
Q 046656 369 LL 370 (1326)
Q Consensus 369 lL 370 (1326)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.36 E-value=0.00086 Score=70.10 Aligned_cols=59 Identities=10% Similarity=0.184 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEecCCcHHHHHH
Q 046656 968 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVKNTVETGRTVVCTIHQPSIDIFEA 1028 (1326)
Q Consensus 968 qrl~ia~aL~~~p~illLDEPtsgLD~~~~~~i~-~~l~~~~~~g~tvi~~~H~~~~~~~~~ 1028 (1326)
+++.-....+.+.+++++||+..|=|+.....+. ..++.+.+.+..++++||.. ++.+.
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 3333333344566799999999999987766544 44555666789999999974 44443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.22 E-value=0.0005 Score=71.92 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=31.8
Q ss_pred hcCCccceEecCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhHHhh
Q 046656 311 VGPALALFMDEISNGLDSSTTFHIVNSLRQNIHILNGTAVISLLQPAPETYDL 363 (1326)
Q Consensus 311 ~~~~~illLDEptsgLD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 363 (1326)
+.+..++++||+.+|=|+.....+...+-+.-...+..+++ .+|.. ++..+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~-tTH~~-eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLF-ATHYF-ELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-ECCCH-HHHTC
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEE-eeech-hhhhh
Confidence 34557999999999999987777665443332233445544 45543 44443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00057 Score=72.06 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=31.0
Q ss_pred hcCCccceEecCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEEecCh
Q 046656 311 VGPALALFMDEISNGLDSSTTFHIVNS-LRQNIHILNGTAVISLLQPA 357 (1326)
Q Consensus 311 ~~~~~illLDEptsgLD~~t~~~i~~~-l~~~~~~~~~t~ii~i~q~~ 357 (1326)
..+..++++||+.+|=|+.....+... +..+... ....++..||..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~~ 164 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHYF 164 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSCG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecchH
Confidence 344579999999999999998888765 4455443 333444445543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.0019 Score=67.99 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=35.3
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHhc-CCEEEEEecCCc
Q 046656 976 LVANPSIIFMDEPTSGLDARAAAIVMR-TVKNTVET-GRTVVCTIHQPS 1022 (1326)
Q Consensus 976 L~~~p~illLDEPtsgLD~~~~~~i~~-~l~~~~~~-g~tvi~~~H~~~ 1022 (1326)
-+.+.+++++||+..|=|+.....+.. .++.+..+ ++.++++||...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 345567999999999999887776654 46566544 578899999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.86 E-value=0.00082 Score=72.71 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=27.9
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
-|+++.+=+.||+++.|.|++|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3555544589999999999999999999887773
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.44 E-value=0.00066 Score=70.52 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=25.3
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEE
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 185 (1326)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 47889999999999999999999976533 66664
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.39 E-value=0.0054 Score=64.34 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.5
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+=+++|+++.|.||||||||||+.-++-..
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999998877653
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.37 E-value=0.0089 Score=64.15 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=29.6
Q ss_pred eeecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 138 TILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 138 ~iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+-|+++.+=+.||+++.|.|+||+|||||+.-|+-.
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 345665555899999999999999999998888753
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.00073 Score=66.85 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=22.6
Q ss_pred EEEEecCCCCChhHHHHHHhcccCC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.27 E-value=0.00093 Score=66.47 Aligned_cols=27 Identities=44% Similarity=0.570 Sum_probs=24.9
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998764
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.0011 Score=68.82 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=24.5
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEE
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNIT 882 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~ 882 (1326)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh--hhccCcc
Confidence 478899999999999999999998643 2356654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.09 E-value=0.0011 Score=67.00 Aligned_cols=26 Identities=35% Similarity=0.682 Sum_probs=24.3
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
|+++.|+||||||||||.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999998765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0011 Score=65.69 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=25.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.+.++.|+|||||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.05 E-value=0.0011 Score=65.85 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=28.0
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGH 189 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~ 189 (1326)
++++|+|++|||||||++.|..++......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 478999999999999999999887653222344444443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.00019 Score=73.35 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=29.1
Q ss_pred ecceeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 140 LKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 140 L~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 56777788777 99999999999999999997554
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.00019 Score=73.38 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=27.4
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhc
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~ 869 (1326)
-+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 355677777777 89999999999999999996
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.00072 Score=70.47 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=22.4
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCCCCceeeEEE
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVT 185 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 185 (1326)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 46788999999999999999999976533 67765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.019 Score=61.27 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=33.0
Q ss_pred HhhCCcEEEEeCCCC---C--CCHHHHHHHHHHHHHHHh-cCCEEEEEecC
Q 046656 976 LVANPSIIFMDEPTS---G--LDARAAAIVMRTVKNTVE-TGRTVVCTIHQ 1020 (1326)
Q Consensus 976 L~~~p~illLDEPts---g--LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1020 (1326)
-..+|+++++|--+. + -|......+++.|+++++ .|+|||++.|-
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 457899999996543 1 255666677888887764 49999999884
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.00078 Score=67.39 Aligned_cols=27 Identities=48% Similarity=0.680 Sum_probs=23.6
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCCC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDSS 177 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~~ 177 (1326)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 357899999999999999999988643
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.72 E-value=0.0021 Score=63.78 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=25.4
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++|.++.|+|+|||||||+-++|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998774
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.72 E-value=0.0019 Score=65.02 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.8
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
|.++.|+||||||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999999998654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.63 E-value=0.093 Score=53.79 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=26.6
Q ss_pred eecce-eEEEeCceEEEEecCCCCChhHHHHHHh
Q 046656 139 ILKDV-SGIIKPGRMTLLLGPPSSGKTTLLLALA 171 (1326)
Q Consensus 139 iL~~v-s~~i~~G~~~~ilGp~GsGKSTLL~~L~ 171 (1326)
-|+++ +|=+++|+++.|.|+||+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 35553 4569999999999999999999986544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.61 E-value=0.0021 Score=64.22 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.5
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.++|.||+|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.59 E-value=0.0027 Score=61.47 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.2
Q ss_pred eEEEEecCCCCChhHHHHHHhcc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+++.|.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999988654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0022 Score=63.16 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.58 E-value=0.0025 Score=62.84 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=22.6
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998763
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.53 E-value=0.0013 Score=68.56 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCCCCeeEEEEE
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGNIT 882 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~~~~~~G~i~ 882 (1326)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 467889999999999999999998543 2356664
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.49 E-value=0.0028 Score=62.77 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=24.3
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++|-.++|.|||||||||+.+.|+-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3566789999999999999999998763
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.38 E-value=0.0032 Score=62.27 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++.|.|+|||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999875
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.30 E-value=0.0039 Score=61.65 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.036 Score=58.91 Aligned_cols=47 Identities=6% Similarity=0.057 Sum_probs=32.2
Q ss_pred hhcCCccceEecCCCC-----CCHHHHHHHHHHHHHHHHhcCCEEEEEEecCh
Q 046656 310 MVGPALALFMDEISNG-----LDSSTTFHIVNSLRQNIHILNGTAVISLLQPA 357 (1326)
Q Consensus 310 l~~~~~illLDEptsg-----LD~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 357 (1326)
...+++++++|--++- -|.....++++.|+.++...+ ++++.+||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~~vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCC-Cceehhhhcc
Confidence 3468899999966432 256667788888888887654 5566677754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.16 E-value=0.0039 Score=61.46 Aligned_cols=22 Identities=50% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999775
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.13 E-value=0.0038 Score=63.36 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999963
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.0045 Score=63.63 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999987754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0055 Score=62.62 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=27.1
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
|=+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999999888754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.005 Score=60.67 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=24.0
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999754
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.89 E-value=0.17 Score=51.77 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=25.5
Q ss_pred eecc-eeEEeCCeEEEEeccCCCChhhHHhhhc
Q 046656 838 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 838 L~~v-s~~i~~Ge~~al~G~nGaGKSTLl~~L~ 869 (1326)
|+++ ++-+++|+++.|.|++|+|||||..-++
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4443 3469999999999999999999975443
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.85 E-value=0.0063 Score=64.85 Aligned_cols=26 Identities=38% Similarity=0.417 Sum_probs=23.3
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
...+++.||||||||||.++|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999999875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.032 Score=59.06 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.5
Q ss_pred CeEEEEeccCCCChhhHHhhhcCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
..-+.|.||+|+|||+|.+.|+..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 344679999999999999999964
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0057 Score=62.79 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.6
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.|.++.|+||||+|||||++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999999754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.79 E-value=0.0061 Score=60.68 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.2
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
++++|.|++||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987643
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.73 E-value=0.0061 Score=63.85 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999986543
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.73 E-value=0.006 Score=61.87 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|++|||||||+|.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999854
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.71 E-value=0.0049 Score=62.59 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.1
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+.+.++.|+|||||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998865
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.71 E-value=0.0063 Score=60.18 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.1
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++|.++.|+|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999653
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.70 E-value=0.0068 Score=61.38 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.9
Q ss_pred eEEEEecCCCCChhHHHHHHhccc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999999764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.66 E-value=0.0062 Score=60.04 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=25.8
Q ss_pred EEEEeccCCCChhhHHhhhcCCCC-CCeeEEEEEEcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRKT-GGYISGNITISG 885 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~~-~~~~~G~i~i~g 885 (1326)
+++|+|++|||||||++.|..... .|..-|.|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 689999999999999998876432 223345555444
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.64 E-value=0.0072 Score=60.98 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.2
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|-.+.|+|||||||||.-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356677899999999999999999764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0064 Score=58.96 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.56 E-value=0.0051 Score=67.77 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=27.2
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccCCC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLDSS 177 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~~~ 177 (1326)
++.|.-++|.||.||||||||++|++.+++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 4556678999999999999999999999875
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0048 Score=62.19 Aligned_cols=27 Identities=37% Similarity=0.414 Sum_probs=24.3
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999998764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.52 E-value=0.0056 Score=61.47 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999885
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.51 E-value=0.022 Score=60.02 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.+.||+|+|||+|.++|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.48 E-value=0.0067 Score=60.60 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.4
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|+||+|||||+++|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999963
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.0075 Score=61.17 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCChhHHHHHHhccc
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-.++.|+|||||||||+.+.|+-.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999999876
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.42 E-value=0.0086 Score=59.21 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=19.9
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.39 E-value=0.0083 Score=59.11 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.6
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++|-.++|.|++||||||+.+.|+-..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999999644
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.38 E-value=0.008 Score=68.33 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=37.9
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCcHHHHHHhceee
Q 046656 972 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVKNTVETGRTVVCTIHQPSIDIFEAFDELF 1033 (1326)
Q Consensus 972 ia~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~D~v~ 1033 (1326)
+..+|=++|++|++.|.. |+.++...+ +.+.+|..|+.|.|-.+ .....+|++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhhhh
Confidence 445566799999999996 667765544 34567999999999765 344455543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.29 E-value=0.0093 Score=59.34 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.0
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++-+++.++|+|||||||+.+.++-.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999988653
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.26 E-value=0.0077 Score=59.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|.|++|+|||||.+.|+...
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999743
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.26 E-value=0.0088 Score=60.17 Aligned_cols=24 Identities=38% Similarity=0.329 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999987654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.25 E-value=0.0069 Score=60.76 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEeccCCCChhhHHhhhcCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.18 E-value=0.0092 Score=59.54 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999853
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.17 E-value=0.0093 Score=59.41 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.|+|||||||||+.+.|+-.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999988763
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.14 E-value=0.011 Score=57.61 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.3
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
|=.++|+|++|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999854
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.14 E-value=0.01 Score=57.18 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEeccCCCChhhHHhhhcC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g 870 (1326)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.0092 Score=60.85 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++|||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.07 E-value=0.01 Score=59.30 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-++|+|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.011 Score=59.65 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999765
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.011 Score=59.04 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.0
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.+.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999987654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.013 Score=57.04 Aligned_cols=23 Identities=43% Similarity=0.713 Sum_probs=21.0
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-++|+|++|+|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999874
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.011 Score=59.67 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999988765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.92 E-value=0.011 Score=57.17 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|++|+|||||++.|.+..
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999998753
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.92 E-value=0.01 Score=59.72 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.+.|+|||||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36699999999999999998775
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.90 E-value=0.012 Score=57.82 Aligned_cols=23 Identities=48% Similarity=0.590 Sum_probs=20.6
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.|+|+|||||||+.+.|+-.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.013 Score=58.11 Aligned_cols=22 Identities=45% Similarity=0.729 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
.++|+|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.83 E-value=0.013 Score=58.18 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.4
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999973
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.81 E-value=0.009 Score=59.61 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|++|+|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.014 Score=57.91 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.8
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.76 E-value=0.013 Score=57.92 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.012 Score=56.84 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.75 E-value=0.013 Score=58.44 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+.|+|||||||||+.+.|+-.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999998763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.014 Score=60.77 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=25.8
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
|=+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999999877643
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.62 E-value=0.014 Score=57.22 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.2
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..++.|.|++||||||+.+.|+...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.60 E-value=0.013 Score=58.88 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++||-|++|||||||.+.|+-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999753
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.59 E-value=0.014 Score=58.30 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.9
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+=.+||+|.+|+|||||++.|.|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.59 E-value=0.011 Score=58.70 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-++|+|++|+|||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.58 E-value=0.012 Score=58.63 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.8
Q ss_pred eEEEEecCCCCChhHHHHHHhcccCC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
+++.|.|++||||||+.+.|+..+..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999988753
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.56 E-value=0.011 Score=58.98 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+||+|.+|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.013 Score=57.98 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+.|.||+|+|||||++.++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999753
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.49 E-value=0.013 Score=61.12 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.4
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.44 E-value=0.016 Score=57.30 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.|+|++||||||+-+.|+-.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999998764
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.42 E-value=0.014 Score=58.73 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997643
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.39 E-value=0.015 Score=56.52 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|++|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.39 E-value=0.016 Score=57.52 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+++|+|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.39 E-value=0.016 Score=56.58 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred eEEEEeccCCCChhhHHhhhcCCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999999654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.016 Score=57.83 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.4
Q ss_pred eEEEEeccCCCChhhHHhhhcCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.36 E-value=0.014 Score=57.40 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.++|++||||||+-+.|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45669999999999999998874
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.35 E-value=0.031 Score=58.03 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=28.8
Q ss_pred ecc-eeEEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 140 LKD-VSGIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 140 L~~-vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
|++ +.+=+++|+++.|.|+||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444 34569999999999999999999998887654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.34 E-value=0.017 Score=58.72 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.1
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++++|.||||||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999997653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.34 E-value=0.016 Score=58.39 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999875
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.30 E-value=0.017 Score=57.62 Aligned_cols=22 Identities=55% Similarity=0.851 Sum_probs=20.1
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.017 Score=57.61 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=19.8
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999875
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.27 E-value=0.06 Score=57.16 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+..-+.|.||+|+|||+|.++|++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34447799999999999999999754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.27 E-value=0.017 Score=57.18 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.27 E-value=0.017 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987754
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.017 Score=57.45 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+.|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.015 Score=57.66 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.23 E-value=0.017 Score=57.69 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999975
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.19 E-value=0.017 Score=56.39 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=20.2
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|++|+|||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999998864
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.011 Score=58.76 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|++++|||||+|+|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.11 E-value=0.017 Score=56.57 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=19.0
Q ss_pred EEEeccCCCChhhHHhhhcCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+.|+|++||||||+.+.|+-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999854
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.017 Score=63.40 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=23.0
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.98 E-value=0.024 Score=59.32 Aligned_cols=27 Identities=41% Similarity=0.457 Sum_probs=24.0
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHh
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALA 171 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~ 171 (1326)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 459999999999999999999987554
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.94 E-value=0.02 Score=56.63 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred eEEEEeccCCCChhhHHhhhcCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+++|.|++||||||+.+.|+-+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999854
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.87 E-value=0.0088 Score=58.24 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|++|+|||||+++|.|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.85 E-value=0.018 Score=59.04 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.5
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|.|||||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.84 E-value=0.019 Score=57.89 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEeccCCCChhhHHhhhcCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+.|+||||||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.83 E-value=0.018 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.014 Score=58.67 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=22.8
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.|.++.|+|++||||||+-+.|+-+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.80 E-value=0.02 Score=60.71 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.018 Score=58.48 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.78 E-value=0.019 Score=55.36 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+.|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.71 E-value=0.022 Score=57.96 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-++|+|++|+|||||++.|.+.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.024 Score=58.03 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.6
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|-|++|||||||-+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.021 Score=55.04 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+.|+||+||||||+-+.|+-..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999999654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.55 E-value=0.023 Score=55.96 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999985
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.034 Score=60.24 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=33.4
Q ss_pred EEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccCCCCCCC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQHDVHIGE 212 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 212 (1326)
+++|.|++||||||+.+.|...+... .....+..+++++.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECCc
Confidence 78999999999999999998877421 001246788888887753
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.46 E-value=0.027 Score=57.94 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|-|||||||||.-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999999874
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.03 Score=56.77 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=25.4
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
+-+++|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887774
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.35 E-value=0.023 Score=55.13 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998753
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.34 E-value=0.025 Score=59.95 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|++|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.32 E-value=0.16 Score=53.48 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.1
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
+=+++|.++-|.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 5689999999999999999999877765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.033 Score=58.16 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=26.0
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+=+++|+++.|.||||||||||...++..
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999999888753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.15 E-value=0.029 Score=58.86 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=22.3
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..++|.||||+||||+.++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.07 E-value=0.032 Score=56.04 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEEeccCCCChhhHHhhhcC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++.|+||+||||||+-+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999985
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.029 Score=57.38 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++||-|++||||||+-+.|+-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.04 E-value=0.026 Score=58.93 Aligned_cols=23 Identities=52% Similarity=0.785 Sum_probs=20.9
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999999864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.02 E-value=0.037 Score=57.52 Aligned_cols=24 Identities=50% Similarity=0.771 Sum_probs=21.9
Q ss_pred EEEecCCCCChhHHHHHHhcccCC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
+++.||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 679999999999999999998764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.00 E-value=0.024 Score=61.83 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.-++++||||+|||.|.++|+..+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc
Confidence 34556899999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.97 E-value=0.034 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999885
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.97 E-value=0.032 Score=61.13 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCChhHHHHHHhccc
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.93 E-value=0.026 Score=61.90 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.5
Q ss_pred eeEEeCCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 842 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 842 s~~i~~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
...++.|.-+.|.|++||||||||++|.+..+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 33456677789999999999999999998664
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.69 E-value=0.035 Score=57.50 Aligned_cols=23 Identities=57% Similarity=0.726 Sum_probs=20.9
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++|.||||+||||+.++|+..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68999999999999999998763
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.66 E-value=0.013 Score=57.03 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|.+|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.63 E-value=0.033 Score=55.35 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEeccCCCChhhHHhhhcCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+||+|...||||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.63 E-value=0.043 Score=56.11 Aligned_cols=27 Identities=41% Similarity=0.513 Sum_probs=24.1
Q ss_pred eCceEEEEecCCCCChhHHHHHHhccc
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+.|.++-+.|.||||||||.+.|.-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999998765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.56 E-value=0.037 Score=57.36 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999885
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.47 E-value=0.035 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.|+|++||||||+-+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.45 E-value=0.038 Score=53.89 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.8
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999988764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.42 E-value=0.041 Score=55.06 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.4
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
++|-.+.|+||.||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677888999999999999999994
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.36 E-value=0.038 Score=58.46 Aligned_cols=27 Identities=41% Similarity=0.669 Sum_probs=23.4
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+..-+++.||||+|||+|.++|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345578999999999999999999874
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.33 E-value=0.038 Score=58.05 Aligned_cols=25 Identities=44% Similarity=0.612 Sum_probs=22.0
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.=+++.||||+|||+|.++|+....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 3578999999999999999998754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.21 E-value=0.043 Score=55.11 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=22.6
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.14 E-value=0.04 Score=58.58 Aligned_cols=28 Identities=39% Similarity=0.672 Sum_probs=24.0
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++..-++|.||||+|||+|.++|++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3445588999999999999999999874
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.03 E-value=0.04 Score=54.23 Aligned_cols=21 Identities=57% Similarity=0.730 Sum_probs=19.4
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++++|++|+|||||++.|.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999775
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.02 E-value=0.045 Score=54.85 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHhc
Q 046656 152 MTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G 172 (1326)
+++|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999853
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.02 E-value=0.042 Score=57.74 Aligned_cols=24 Identities=50% Similarity=0.743 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
-+++.||||+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 368999999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.00 E-value=0.05 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.9
Q ss_pred CCeEEEEeccCCCChhhHHhhhcC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
+-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998863
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.048 Score=55.77 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=25.1
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.|.+++|-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.95 E-value=0.048 Score=54.82 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.6
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
-.++.|+||.||||||+-+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.89 E-value=0.044 Score=61.97 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.75 E-value=0.048 Score=53.42 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.1
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.75 E-value=0.055 Score=55.02 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.0
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+.+++++||+|+||||.+-=|+-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999888887654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.70 E-value=0.04 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+.+.++.|+||.||||||+-+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.64 E-value=0.051 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|++|+|||||++.+.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHcCC
Confidence 7899999999999999987643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.58 E-value=0.052 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999998653
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.56 E-value=0.042 Score=54.95 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+.|+||.||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999853
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.50 E-value=0.053 Score=57.11 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.1
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.++.++|.||+|+|||||++.++-...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 456899999999999999999887654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.46 E-value=0.053 Score=54.87 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++.++|.+|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999953
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.44 E-value=0.051 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.|+|++||||||+-+.|+-..
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.39 E-value=0.06 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred eEEEEeccCCCChhhHHhhhcCCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
-.++|+|.+|||||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999854
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.34 E-value=0.045 Score=55.59 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.05 Score=56.40 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.6
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++++|=|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999999875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.31 E-value=0.056 Score=52.59 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=18.2
Q ss_pred EEEecCCCCChhHHHHHHhc
Q 046656 153 TLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G 172 (1326)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.057 Score=53.20 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988664
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.23 E-value=0.042 Score=60.48 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.9
Q ss_pred EEEEecCCCCChhHHHHHHhcccCC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
-++|.||||+|||||++.|++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4689999999999999999999975
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.15 E-value=0.068 Score=60.98 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=30.2
Q ss_pred EEEEecCCCCChhHHHHHHhcccCCCCceeeEEEECCccCCCCCccceEEEEccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLDSSLKVSGRVTYNGHDMNEFVPQRTAAYISQH 206 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~ 206 (1326)
-++++||+|||||-|.+.||+.+.- =-+..++...+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeecceee------ecceeecc
Confidence 6789999999999999999998752 13445543333 47999885
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.14 E-value=0.055 Score=52.78 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.13 E-value=0.052 Score=61.34 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+||+|++|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.13 E-value=0.056 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999654
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.10 E-value=0.064 Score=54.59 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.5
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.|.+++|-|+.||||||+.+.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.09 E-value=0.067 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.1
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.08 E-value=0.06 Score=56.94 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
=+++.||||+|||+|.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 378999999999999999999864
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.05 E-value=0.069 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++|+|+..+|||||+++|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 68999999999999999998653
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.061 Score=53.88 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
++.|+||.||||||.-+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999985
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.03 E-value=0.065 Score=54.50 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.5
Q ss_pred CCeEEEEeccCCCChhhHHhhhcC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.+.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999877775
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.02 E-value=0.057 Score=56.75 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=23.7
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999998754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.98 E-value=0.069 Score=54.49 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.2
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++|-++-|.|.+|||||||-+.|.-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999853
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.93 E-value=0.12 Score=50.86 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=26.7
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
.|+.....+ .|.=++|.||||+|||||...|.-+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 455444444 8899999999999999999888653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.065 Score=55.37 Aligned_cols=22 Identities=50% Similarity=0.908 Sum_probs=20.3
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+.+-||+|+|||||.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.76 E-value=0.067 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+.|+||.||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999853
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.71 E-value=0.067 Score=52.58 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.072 Score=52.93 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.63 E-value=0.072 Score=52.29 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++++|+.|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=0.064 Score=58.65 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCeEEEEeccCCCChhhHHhhhcC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
..-.+||.|+.|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.54 E-value=4.8 Score=41.88 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCChhHHHHHHhcc
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
..+++|.|..|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.46 E-value=0.064 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988763
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.44 E-value=0.089 Score=55.61 Aligned_cols=31 Identities=42% Similarity=0.604 Sum_probs=27.5
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+=+++|++|.|.||||||||||+..++....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 6799999999999999999999988877643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.43 E-value=0.067 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++++|.+|+|||||++.+.+..
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 6899999999999999887653
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.076 Score=54.17 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.2
Q ss_pred eCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 846 RPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 846 ~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++|-+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.39 E-value=0.065 Score=52.45 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.7
Q ss_pred EEEeccCCCChhhHHhhhcC
Q 046656 851 TALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g 870 (1326)
++++|.+|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.35 E-value=0.073 Score=53.18 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhc
Q 046656 850 LTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~ 869 (1326)
++||.|+.||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999996
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.33 E-value=0.097 Score=50.57 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=25.9
Q ss_pred EeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 147 IKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 147 i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+||.++++-|+=|||||||.+.++.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 45899999999999999999999987663
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.086 Score=51.76 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.6
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.21 E-value=0.092 Score=53.36 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChhHHHHHHhcccC
Q 046656 150 GRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 150 G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..+++++||+|+||||.+--|+-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999988887764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.19 E-value=0.068 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.1
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
...+.|.||+|+|||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34588999999999999999998553
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.084 Score=51.58 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.13 E-value=0.073 Score=52.12 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.075 Score=52.05 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999987654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.16 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
++|+|+.|+|||||++.+.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.09 E-value=0.08 Score=52.45 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.6
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+.|+||.||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999954
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.04 E-value=0.082 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|.+|+|||||++.+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.01 E-value=0.45 Score=50.04 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=25.8
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+-++.|.++-|-|++|+|||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 56899999999999999999998887753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.00 E-value=0.093 Score=54.12 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.8
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
+=+++|+++-|.|++|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4599999999999999999999877653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.077 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999998753
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.89 E-value=0.083 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+++|.||+||||||+-+.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999964
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.87 E-value=0.15 Score=50.10 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=26.6
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
.|+. +...-.|.=++|.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3443 444567889999999999999999888764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=0.093 Score=51.21 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++|+|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 68999999999999999988643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.85 E-value=0.079 Score=54.04 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.1
Q ss_pred CCeEEEEeccCCCChhhHHhhhcC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
+-.+++++||+|+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345889999999999999877774
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.073 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.81 E-value=0.085 Score=52.30 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=0.067 Score=57.80 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++||.|++||||||+-+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHH
Confidence 8999999999999998888754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.72 E-value=0.076 Score=52.06 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|++|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3789999999999999998763
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.72 E-value=0.087 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.63 E-value=0.088 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.6
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|.+|+|||||++.+.+..
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999987643
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.61 E-value=0.064 Score=53.11 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=18.6
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999998654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.58 E-value=0.15 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.55 E-value=0.091 Score=53.95 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++-||+|+||||+.++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 57899999999999999988753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.42 E-value=0.12 Score=52.69 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=25.7
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5899999999999999999999988764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.40 E-value=0.07 Score=56.41 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.8
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
++.|.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 466779999999999999998763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.40 E-value=0.076 Score=56.59 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999988764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.39 E-value=0.093 Score=53.88 Aligned_cols=23 Identities=43% Similarity=0.797 Sum_probs=20.6
Q ss_pred EEEecCCCCChhHHHHHHhcccC
Q 046656 153 TLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++.||+|+||||+.++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 67999999999999999998753
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.37 E-value=0.097 Score=50.79 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++++|.+|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998774
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.36 E-value=0.096 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.1
Q ss_pred CceEEEEecCCCCChhHHHHHHhccc
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+-.+++++||+|+||||.+-=|+-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44688999999999999988888765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.36 E-value=0.1 Score=52.97 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=18.6
Q ss_pred EEEEecCCCCChhHHHHHHh
Q 046656 152 MTLLLGPPSSGKTTLLLALA 171 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~ 171 (1326)
+++|.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.34 E-value=0.094 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.+.|+||.||||||.-+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.29 E-value=0.067 Score=57.05 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=17.0
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999998753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.1 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=23.2
Q ss_pred CeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
+.+++|-|+-||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=0.092 Score=50.88 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.20 E-value=0.1 Score=50.60 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.7
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.088 Score=51.76 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=0.093 Score=51.44 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.8
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.14 E-value=0.12 Score=49.92 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=24.1
Q ss_pred EeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 845 FRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 845 i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.+||.++.|-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHh
Confidence 47999999999999999999999985
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.12 E-value=0.093 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++++|++|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.09 E-value=0.076 Score=52.08 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.3
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++++|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5699999999999999998654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.09 E-value=0.1 Score=58.74 Aligned_cols=29 Identities=41% Similarity=0.617 Sum_probs=25.4
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccCC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLDS 176 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~~ 176 (1326)
.++-+++|.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 35669999999999999999999998754
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.11 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|.+|+|||||++.+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.01 E-value=0.094 Score=52.55 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.0
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999988754
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.01 E-value=0.11 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=18.5
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
...+++++||+|+||||.+-=|+-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446789999999999999888887653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.98 E-value=0.074 Score=52.21 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=8.5
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.93 E-value=2.6 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred CeEEEEeccCCCChhhHHhhhcC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.13 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6799999999999999998764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.87 E-value=0.092 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.86 E-value=0.099 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=19.9
Q ss_pred eEEEEeccCCCChhhHHhhhcCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+++++||+|+||||.+-=|+-+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999998878753
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.78 E-value=0.12 Score=52.40 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.3
Q ss_pred CeEEEEeccCCCChhhHHhhhcCC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
..++.++||+|+||||.+-=|+-+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998888753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.73 E-value=0.22 Score=48.92 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=26.9
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+|.....+ .|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 455555555 7888999999999999999888753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.69 E-value=0.19 Score=49.14 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=27.2
Q ss_pred eecceeEEEeCceEEEEecCCCCChhHHHHHHhcc
Q 046656 139 ILKDVSGIIKPGRMTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 139 iL~~vs~~i~~G~~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
.|+. ++..-.|.=++|.|+||+|||||...|.-+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4555 555667899999999999999999877654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.67 E-value=0.11 Score=51.23 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+.|+||.||||||+-+.|+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.67 E-value=0.096 Score=50.95 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|..|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.65 E-value=0.13 Score=52.93 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=25.0
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
+-+++|+++.|.|++|+|||||..-++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999999877764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.62 E-value=0.12 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.++|+|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998853
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.43 E-value=0.13 Score=52.26 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEecCCCCChhHHHHHHhc
Q 046656 152 MTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G 172 (1326)
+++|.|++||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.41 E-value=0.1 Score=53.90 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999873
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.40 E-value=0.098 Score=57.99 Aligned_cols=28 Identities=43% Similarity=0.414 Sum_probs=25.5
Q ss_pred eCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 148 KPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 148 ~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5677999999999999999999999874
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.36 E-value=0.11 Score=56.54 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=26.9
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCC-CCCeeEEEEEEc
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRK-TGGYISGNITIS 884 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~-~~~~~~G~i~i~ 884 (1326)
..-.+||.|+.|||||||++.|.... ..+..-|-|.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecc
Confidence 35579999999999999999998632 122334555554
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.35 E-value=0.12 Score=50.25 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.35 E-value=0.1 Score=54.36 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999999865
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=87.32 E-value=0.12 Score=52.45 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.9
Q ss_pred eEEEEecCCCCChhHHHHHHhcccC
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
.+++++||+|+||||.+-=|+-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999988887664
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=87.22 E-value=0.12 Score=52.54 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+++|.||+||||||+-+.|+...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=87.21 E-value=0.12 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=15.7
Q ss_pred CeEEEEeccCCCChhhHHhhhcC
Q 046656 848 GVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 848 Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
-.+++++||+|+||||.+-=|+-
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999877774
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.16 E-value=0.11 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.6
Q ss_pred EEEEecCCCCChhHHHHHHhcccC
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
+++|-|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998774
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.08 E-value=0.11 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+++++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999988753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=0.11 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|..|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.02 E-value=0.11 Score=51.39 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.97 E-value=0.13 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++-+.+.
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999998754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.95 E-value=0.12 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-++|+|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 46899999999999999987653
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.91 E-value=0.13 Score=50.05 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=0.093 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=17.7
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988664
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.86 E-value=0.16 Score=52.73 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=23.4
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhc
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~ 869 (1326)
+=+++|+++.|.|++|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999999976553
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.86 E-value=0.11 Score=50.66 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.83 E-value=0.13 Score=50.33 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.81 E-value=0.13 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.77 E-value=0.14 Score=51.94 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+|.+++|-|+-||||||+.+.|...
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.76 E-value=0.13 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999987654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.72 E-value=0.13 Score=52.06 Aligned_cols=22 Identities=36% Similarity=0.255 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|+++||||||++.|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3789999999999999999654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.65 E-value=0.14 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.+.|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999886
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.65 E-value=0.15 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+++|-|++|||||||-+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886554
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.61 E-value=0.14 Score=50.54 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+.|+||.||||||+.+.|+-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999853
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.14 Score=49.91 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.1
Q ss_pred EEEecCCCCChhHHHHHHhc
Q 046656 153 TLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G 172 (1326)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997655
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.51 E-value=0.14 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.2
Q ss_pred eEEEEeccCCCChhhHHhhhcCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
-.+.|+||.||||||+-+.|+-.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999953
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.49 E-value=0.13 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988753
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.45 E-value=0.14 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=0.15 Score=49.86 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++.++|..|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.39 E-value=0.16 Score=52.36 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=25.0
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
+-+++|.++.|.|++|+|||||..-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999887764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.34 E-value=0.13 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.29 E-value=0.15 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhc
Q 046656 850 LTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~ 869 (1326)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.26 E-value=0.15 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998854
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.22 E-value=0.15 Score=49.22 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.15 E-value=0.16 Score=51.87 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCCCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGRKT 873 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~~~ 873 (1326)
+|.+++|=|+-||||||+.+.|+-...
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 688999999999999999999986543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.14 E-value=0.14 Score=52.71 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEeccCCCChhhHHhhhcCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+-|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.98 E-value=0.15 Score=53.34 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCeEEEEeccCCCChhhHHhhhcCC
Q 046656 847 PGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 847 ~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+..+.|.||.|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4568899999999999999988753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=85.90 E-value=0.16 Score=49.49 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.87 E-value=0.21 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
-++|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999975
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.83 E-value=0.17 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.74 E-value=0.15 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.4
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+||+|.|-+|||||+++|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999853
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.65 E-value=0.15 Score=50.17 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999876
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.63 E-value=0.18 Score=49.23 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.2
Q ss_pred EEEeccCCCChhhHHhhhcC
Q 046656 851 TALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g 870 (1326)
++++|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.52 E-value=0.17 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|.-+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.50 E-value=0.15 Score=55.28 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.5
Q ss_pred eEEEEeccCCCChhhHHhhhcCCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.-+.++||+|+|||+|.++|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 355689999999999999999743
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.49 E-value=0.15 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++.|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999998763
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.42 E-value=0.18 Score=49.21 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.6
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=85.42 E-value=0.17 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.41 E-value=0.18 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999754
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.37 E-value=0.14 Score=54.02 Aligned_cols=30 Identities=40% Similarity=0.571 Sum_probs=25.6
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
+=++.|+++.|.||+|||||||+..++...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence 568899999999999999999976666543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.22 E-value=0.16 Score=49.36 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.18 E-value=0.16 Score=54.84 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=23.6
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
..+.| .+++.||||+|||.|.++|++++.
T Consensus 120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 120 RYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred ccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 44444 667789999999999999999863
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.17 E-value=0.19 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.4
Q ss_pred eEEeCCeEEEEeccCCCChhhHHhhhc
Q 046656 843 GAFRPGVLTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 843 ~~i~~Ge~~al~G~nGaGKSTLl~~L~ 869 (1326)
+-+++|.++.|.|++|+|||||...++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999999987775
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.17 E-value=0.15 Score=50.91 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEeccCCCChhhHHhhhcC
Q 046656 851 TALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g 870 (1326)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.09 E-value=0.14 Score=50.18 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=9.0
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998876
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.77 E-value=0.17 Score=49.52 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEeccCCCChhhHHhhhcC
Q 046656 851 TALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g 870 (1326)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998875
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.73 E-value=0.28 Score=48.08 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-++++|.+|+|||||++.+.+.-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999777653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.62 E-value=0.23 Score=52.68 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=22.1
Q ss_pred eEEEEeccCCCChhhHHhhhcCCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
-+++|+||-++|||||||.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=0.2 Score=49.02 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998775
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.56 E-value=0.15 Score=53.82 Aligned_cols=31 Identities=52% Similarity=0.721 Sum_probs=27.9
Q ss_pred EEEeCceEEEEecCCCCChhHHHHHHhcccC
Q 046656 145 GIIKPGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 145 ~~i~~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
|=++.|++|-|-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 6789999999999999999999998888654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.54 E-value=0.19 Score=51.56 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEecCCCCChhHHHHHHhcc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 7899999999999999999875
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.44 E-value=0.2 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.40 E-value=0.18 Score=49.00 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.19 E-value=0.2 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.1
Q ss_pred eEEEEecCCCCChhHHHHHHhccc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999964
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=84.16 E-value=0.21 Score=50.52 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhc
Q 046656 850 LTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~ 869 (1326)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.10 E-value=0.21 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=84.07 E-value=0.31 Score=47.76 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=25.0
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.||..-. .-.|.=+.|.|+||+|||||.-.|..+
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3443333 345778999999999999998887753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.74 E-value=0.31 Score=49.07 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=22.8
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
|.=-++|+|+..+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333589999999999999999999754
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.69 E-value=0.21 Score=49.34 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 789999999999999987654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.65 E-value=0.2 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
++.|+|..|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998863
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=83.60 E-value=0.21 Score=51.45 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcc
Confidence 5799999999999999999643
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.54 E-value=0.22 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.++|+|.-+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.54 E-value=0.24 Score=48.13 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.+.++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999885
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=83.42 E-value=0.24 Score=48.07 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
++.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.37 E-value=0.27 Score=53.22 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.2
Q ss_pred CceEEEEecCCCCChhHHHHHHhcccC
Q 046656 149 PGRMTLLLGPPSSGKTTLLLALAGQLD 175 (1326)
Q Consensus 149 ~G~~~~ilGp~GsGKSTLL~~L~G~~~ 175 (1326)
|...++++||+|+|||.|.+.|+-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 444678999999999999999998764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.25 E-value=0.24 Score=49.21 Aligned_cols=19 Identities=47% Similarity=0.681 Sum_probs=17.5
Q ss_pred EEEecCCCCChhHHHHHHh
Q 046656 153 TLLLGPPSSGKTTLLLALA 171 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~ 171 (1326)
++|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999983
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.24 E-value=0.22 Score=48.45 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.22 E-value=0.22 Score=51.04 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEeccCCCChhhHHhhhcCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~ 871 (1326)
+.|.||+|+|||||.++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999964
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.20 E-value=0.24 Score=49.68 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHhhhcCCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+++|-|.-||||||+++.|....
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.17 E-value=0.22 Score=48.47 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.+.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.15 E-value=0.25 Score=49.07 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEeccCCCChhhHHhhhc
Q 046656 850 LTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~ 869 (1326)
++.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999983
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.95 E-value=0.25 Score=48.83 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999998775
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.93 E-value=0.24 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEecCCCCChhHHHHHHhccc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
++|+|++|+|||||++.+.+..
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999998876543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=82.85 E-value=0.25 Score=52.33 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=25.0
Q ss_pred EEeCCeEEEEeccCCCChhhHHhhhcC
Q 046656 844 AFRPGVLTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 844 ~i~~Ge~~al~G~nGaGKSTLl~~L~g 870 (1326)
.|-.|+..+|+|++|+|||||+..|+.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 577899999999999999999999985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.74 E-value=0.26 Score=52.34 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
++||-|+.|||||||-+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999987753
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.71 E-value=0.21 Score=51.56 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+.+.||+|+||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999743
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.30 E-value=0.25 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++++|..|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999977653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.17 E-value=0.28 Score=50.12 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=20.1
Q ss_pred EEEEecCCCCChhHHHHHHh-cccCCC
Q 046656 152 MTLLLGPPSSGKTTLLLALA-GQLDSS 177 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~-G~~~~~ 177 (1326)
-++|+|.+|+|||||++-+. +...|+
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pT 34 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLT 34 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence 46899999999999999874 333343
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.12 E-value=0.45 Score=46.27 Aligned_cols=34 Identities=32% Similarity=0.229 Sum_probs=25.3
Q ss_pred eeecceeEEeCCeEEEEeccCCCChhhHHhhhcCC
Q 046656 837 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 837 vL~~vs~~i~~Ge~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
-++. ++-.-.|.=+.|.|+||+|||||.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4455 333456788999999999999998777643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=81.97 E-value=0.28 Score=48.93 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEeccCCCChhhHHhhhcCCC
Q 046656 851 TALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 851 ~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999843
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.88 E-value=0.3 Score=47.18 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|.+|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.77 E-value=0.3 Score=49.84 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEeccCCCChhhHHhhhc
Q 046656 850 LTALMGVSGAGKTTLMDVLA 869 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~ 869 (1326)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999999875
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.75 E-value=0.29 Score=48.08 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.0
Q ss_pred EEEecCCCCChhHHHHHHhcc
Q 046656 153 TLLLGPPSSGKTTLLLALAGQ 173 (1326)
Q Consensus 153 ~~ilGp~GsGKSTLL~~L~G~ 173 (1326)
++++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999866553
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=81.64 E-value=0.31 Score=51.61 Aligned_cols=29 Identities=38% Similarity=0.635 Sum_probs=25.6
Q ss_pred EEeCceEEEEecCCCCChhHHHHHHhccc
Q 046656 146 IIKPGRMTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 146 ~i~~G~~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
.+-.|+..+|+|++|+|||||+..|+...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999998754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=81.52 E-value=0.33 Score=51.10 Aligned_cols=22 Identities=50% Similarity=0.501 Sum_probs=19.2
Q ss_pred eEEEEecCCCCChhHHHHHHhc
Q 046656 151 RMTLLLGPPSSGKTTLLLALAG 172 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L~G 172 (1326)
+-++|+|+.|||||||..+|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 3579999999999999999943
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.43 E-value=0.31 Score=47.88 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.4
Q ss_pred EEEEeccCCCChhhHHhhhcC
Q 046656 850 LTALMGVSGAGKTTLMDVLAG 870 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g 870 (1326)
++.++|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999987764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.42 E-value=0.35 Score=48.44 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEecCCCCChhHHHHHHhccc
Q 046656 152 MTLLLGPPSSGKTTLLLALAGQL 174 (1326)
Q Consensus 152 ~~~ilGp~GsGKSTLL~~L~G~~ 174 (1326)
-++|+|+.++|||||++.|.+..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998743
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.21 E-value=0.29 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
-+.|.||+|+|||+|.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4679999999999999999964
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.18 E-value=0.31 Score=52.78 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.+||+|..-+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.13 E-value=0.33 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEEeccCCCChhhHHhhhcCCC
Q 046656 849 VLTALMGVSGAGKTTLMDVLAGRK 872 (1326)
Q Consensus 849 e~~al~G~nGaGKSTLl~~L~g~~ 872 (1326)
..+.|.||.|+||||+++.|+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.77 E-value=0.29 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHhhhcCC
Q 046656 850 LTALMGVSGAGKTTLMDVLAGR 871 (1326)
Q Consensus 850 ~~al~G~nGaGKSTLl~~L~g~ 871 (1326)
.++|+|.+|+|||||++.+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999887653
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.62 E-value=0.37 Score=50.86 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.2
Q ss_pred eEEEEecCCCCChhHHHHHH---hcccCC
Q 046656 151 RMTLLLGPPSSGKTTLLLAL---AGQLDS 176 (1326)
Q Consensus 151 ~~~~ilGp~GsGKSTLL~~L---~G~~~~ 176 (1326)
+-++|+|+.|||||||..+| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 35799999999999999999 555543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.37 E-value=0.36 Score=49.03 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=32.0
Q ss_pred hcCCccceEecCCCCC-CHHHHHHHHHHHHHHHHhcCCEEEEEEecChhhH
Q 046656 311 VGPALALFMDEISNGL-DSSTTFHIVNSLRQNIHILNGTAVISLLQPAPET 360 (1326)
Q Consensus 311 ~~~~~illLDEptsgL-D~~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 360 (1326)
+...+++++|+.=.=. +......++..+.... ..++.+|++...+..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCcchhc
Confidence 3456899999984432 4666667777776653 35677777766665443
|