Citrus Sinensis ID: 046658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MGYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHLKRGCDGSELLLL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHccccHHHHHHHHHHcccccHHHcccccEEEEccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccEEEEccEEcccccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEEEcccccccEEEEEcccccEEEEEEEEEccccccccccEEEEEccccEEEEEEEcccccEEEccccccEEEEEEEEEEEEccEEcccccccccccccEEEEEEEEccccHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccEEEEEEEEEEccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEcccEEEEEEEcEEcccccccccccHHHHEEEEEEEEccHHHHHHHHHcccHHHEEEEEEEccccccEEEEEEEccccEEEEEEEEccccccccccccEEEEEcccEEEEEEEcccccccEEEcccccEEEEEEEEEccccHHHHHHccccccccccEEEEEEEccccHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccHHHHccEEEEEEEcccccHHHHHHHHHHHHHcHHHEEEEEEEccccccHHHHHHHHHHHcccccccccEEEEc
Coil and Loop (DISEMBL)
mgyrisdlpdaILGRIVsflptkntvaTSVLSRRWKHVWTSLanlsfddrlclrppasayvvmpgFVDFVQTVLLrthpgnidsfclhcsrpidlssvNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLkldsdcvinapcvgtcfpTMKVLHMQLQNLDNSLtekmfsacpcleelsvhayfdaddsrtnfIIASSTLKHFTLTVVidtdnhfseidhtvmlkapnlqCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQcydnfcpsfselTFLEVKLagsgwrvlpiilhsspnlerllvdKECWFEITKEQfgwiesdcvpqclLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHlkrgcdgsellll
Flexible Loop (DISEMBL)
mgyrisdlpdaiLGRIVSFLPTKNTVATSVLSRRWKHVWTSlanlsfddrlCLRPPASAYVVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQfgwiesdcvPQCLLQRVKKIEIIrvqgdedeqRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRlshlkrgcdgsellll
Low Complexity Region (SEG)
MGYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHLKRGCDGSELLLL
Disordered region (IsUnstruct)
******DLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLR******************
Disordered Region (DISOPRED)
MGYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHLKRGCDGSELLLL
Disordered Region (DISEMBL)
MGYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHLKRGCDGSELLLL
Disordered Region (DISPRO)
****ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHLKRGCDGSELLLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHLKRGCDGSELLLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q9SCQ5	427	Putative FBD-associated F	yes	no	0.951	0.920	0.265	1e-29
Q9FM87	430	Putative FBD-associated F	no	no	0.917	0.881	0.268	4e-29
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.939	0.926	0.281	8e-29
Q9LXR4	454	Putative F-box/LRR-repeat	no	no	0.876	0.797	0.281	1e-27
Q9LXQ6	427	Putative F-box protein At	no	no	0.900	0.871	0.257	3e-25
Q6NKX3	448	F-box/FBD/LRR-repeat prot	no	no	0.886	0.816	0.271	5e-25
Q8GXW6	482	F-box/LRR-repeat protein	no	no	0.871	0.746	0.258	9e-25
Q9FM89	422	F-box/FBD/LRR-repeat prot	no	no	0.941	0.921	0.262	5e-24
Q9LXR6	457	Putative F-box protein At	no	no	0.883	0.798	0.271	9e-24
O22232	448	Putative F-box/LRR-repeat	no	no	0.929	0.857	0.266	4e-23

>sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 205/440 (46%), Gaps = 47/440 (10%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RIS+L D +L +IVS LPTK+ V T +LS+RWK +W  +  L FDD   L P        
Sbjct: 3   RISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEPSYYG---- 58

Query: 64  PGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQL-----YLG 118
             F+ +V   ++      +++   +         +  W+   +++++REL++     Y  
Sbjct: 59  -RFLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYFR 117

Query: 119 QQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQ-LQNLDNSLTEKMF 177
           +   ++L +++YT   LEVLKL S  V+N P +  CFP++K LH+  ++        ++ 
Sbjct: 118 EHRSIKLPKSLYTYEKLEVLKLASTVVLNVP-IDVCFPSLKSLHLVCVEYKTKKSHRRLL 176

Query: 178 SACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNL 237
           S CP LEEL +   +++   R+ F +   TL+  +   ++DT       D T ++ AP L
Sbjct: 177 SGCPVLEELVLDKSYNSFHVRS-FYVEIPTLQSLS---ILDTSGELYG-DFTFVVNAPAL 231

Query: 238 QCLHIIADRLGSYVLEE-MHCLHEAVVHISYAEWS------QAVDQCYDNFCPS------ 284
           +  + + D  G   L + M  + +  + + Y          ++V +      PS      
Sbjct: 232 KYFNFV-DFYGDLCLRDNMPEVVDVNIKVIYRNPKKLLGPLKSVKRLSLCLSPSTTLHNH 290

Query: 285 --FSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKEC------WFEITKEQFGW 333
             F +L  LE  L G     W +L  +L SSP L+ L +  EC      + +   E+  W
Sbjct: 291 MEFYQLVHLE--LCGDALMWWDLLTWMLQSSPKLQVLKI-YECKCEEHDYLDDPIEE-HW 346

Query: 334 IESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIF-KNQRK 392
            E   VPQCLL  +   E       ++E++V+ Y L+  + L+    +  + ++ K +R 
Sbjct: 347 EEPSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKTATFSAASYLYPKEERS 406

Query: 393 HLRQRLSHLKRGCDGSELLL 412
                L ++ R     +LLL
Sbjct: 407 RELNELVYMARASSSCQLLL 426

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM87|FBD26_ARATH Putative FBD-associated F-box protein At5g56440 OS=Arabidopsis thaliana GN=At5g56440 PE=4 SV=1

 Score =  129 bits (324), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 200/443 (45%), Gaps = 64/443 (14%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RIS LPD ++ +I+SF+PTK  V+T++LS+RW+++W  +  L + D              
Sbjct: 3   RISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRD-------------- 48

Query: 64  PGFVD--------FVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQL 115
           P  VD        FV   LL      +++  L  SR    S +  W+S A+ + VR L +
Sbjct: 49  PSLVDTEHWRASRFVDKFLLLHEAPVLETLHLSLSRNCPPSDIETWISVAISRRVRNLHI 108

Query: 116 --YLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSL 172
             Y+     ++L  ++YT  TL  L L  D  ++      CF ++KVL +       + +
Sbjct: 109 YRYIPSTGPIRLPRSLYTCETLVSLYLLLDFTVDDAPFMFCFRSLKVLVLLFAKFSSDEI 168

Query: 173 TEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVML 232
             ++ S CP LE L        +D+  NF IA+ +L+     + ID  +     D   ++
Sbjct: 169 VNRLLSGCPVLEGL---ILIRRNDNVKNFTIAAPSLQRL---IAIDCRSQVPGDDVGFVI 222

Query: 233 KAPNLQCLHII--ADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYD----------- 279
           KAP+L+ L ++  +   G   L +M  L +A + + + + S+    C             
Sbjct: 223 KAPSLKSLTLLNFSPHSGFRSLVKMPDLVKASIKVRHGD-SKMFMGCLTSTKRLALCLQP 281

Query: 280 --NFCP--SFSELTFLEVKLAGSGWRVLPIILHSSPNLERL-----------LVD--KEC 322
             + CP   F++L  L +     GW  L  IL+ +P L  L           L+D  K C
Sbjct: 282 PLDSCPIGVFNQLVSLSLCTCSLGWCRL--ILNHTPKLRVLRFEQRQAKFYQLLDPLKRC 339

Query: 323 WFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINC 382
                  Q  W +   VP+CL+  ++ +E I  +G E E++V+ Y L+  + L+ M I  
Sbjct: 340 CSSSVDVQTQWEQPSSVPKCLISSLETVEWIDYKGREVEKKVVMYLLENSRQLKTMAIRS 399

Query: 383 KALIFKNQRKHLRQRLSHLKRGC 405
                 N++  + Q LS + R C
Sbjct: 400 LKSTNDNEKLKMLQELSSIHRIC 422

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score =  128 bits (322), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 202/437 (46%), Gaps = 49/437 (11%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RIS L D +L +I+SF+P K+ VATS+LS+RW+ +W  ++ L +DD        S     
Sbjct: 3   RISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYKS----- 57

Query: 64  PGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYL---GQQ 120
             F  FV   LL  +   I    L+         +  W+  AL + +R+L++ +      
Sbjct: 58  --FSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSND 115

Query: 121 NRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL--DNSLTEKMFS 178
               L  ++YTS TLE L+L +  +++ P    C P++KVLH++  +   D SL   +F 
Sbjct: 116 ASFSLPSSLYTSDTLETLRLINFVLLDVPS-SVCLPSLKVLHLKTVDYEDDASLPSLLF- 173

Query: 179 ACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQ 238
            CP LEEL V  +    +    F++ S  L+  ++      D ++ + D  V +  P+L+
Sbjct: 174 GCPNLEELFVERHDQDLEMDVTFVVPS--LRRLSM-----IDKNYGQCDRYV-IDVPSLK 225

Query: 239 CLHIIADRLGSY-VLEEMHCLHEAVVHIS------YAEWSQAVDQ------CYDNFCPS- 284
            L+I  D +     +E M  L EA V I+      +     +V Q        +  CPS 
Sbjct: 226 YLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLRALTSVRQLSLCLSLSEVMCPSG 285

Query: 285 --FSELTFLEVKLAGSG-WRVLPIILHSSPNLERL-LVDKE-----CWFEITKEQFGWIE 335
             FS+L  L +     G W +L  +L  SP L+ L L+DK+     C  E      GW  
Sbjct: 286 IIFSQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKLIDKQHESGLCGIETP---IGWKL 342

Query: 336 SDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLR 395
              VP+CLL  ++  E I  +G   ++ V  Y L+   CL     + ++     ++ H+ 
Sbjct: 343 PSSVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACLRTAKFSPESTDV-GEKYHML 401

Query: 396 QRLSHLKRGCDGSELLL 412
           + L+ +      S+LL 
Sbjct: 402 KELASVPTASTSSKLLF 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR4|FBL56_ARATH Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 186/433 (42%), Gaps = 71/433 (16%)

Query: 5   ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYV--- 61
           +S LPD +LG I+S L TK    TS+LS+RW+++   +  L FDD   L P         
Sbjct: 5   VSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFLNPEEGKQTREG 64

Query: 62  VMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQN 121
               F+DFV  VL       I  F L C   +DL  +N W+ + L + V  + L +   +
Sbjct: 65  TRQSFIDFVDRVLALHGDSPIRKFSLKCKTGVDLDLLNQWICNVLQRGVLLIDLSMDLGH 124

Query: 122 RVQLLETIYTSTTLEVLKLDSDCVIN-APCVGTCFPTMKVLHM-QLQNLDNSLTEKMFSA 179
           R   +E I+ S TL  LKL S C I   P   +  P +K L +  +   D+   E++ SA
Sbjct: 125 RCMFIE-IFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSVSWSDSGQLERLLSA 183

Query: 180 CPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQC 239
           CP LE L++    +   S  N  ++ ++LK  T+  V       S   H      PNL C
Sbjct: 184 CPALEALNLA---NVHGSYPNATVSIASLKTLTIKSV-----SLSGPAHVFSFDTPNLLC 235

Query: 240 LH------------------------IIADRL---------GSYVLEEMHCLHEAVVHIS 266
           L+                        ++ DRL         G  +L E+  L   +  + 
Sbjct: 236 LNYTALFEDDYPLVNLEYLVEAQIKFVLTDRLIKLVSVRKNGLLMLSEVQKLIRGISSVR 295

Query: 267 YAEWS----QAVDQCYDNFCPSFSELTFLEVKLAGS-GWRVLPIILHSSPNLERLL---- 317
               S    Q + QC     P F+ LTFL ++ +    W+ +P++L + P LE L+    
Sbjct: 296 KLYLSPGTLQVLGQCSQAM-PVFNNLTFLVIESSMDIRWQAMPVLLKNCPRLETLVIKGG 354

Query: 318 ----VDKECWFE---ITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQ 370
               V  +C      I++E+ G   + C        VK++EI   QG   E  +I++F  
Sbjct: 355 LVHCVAADCGDACTCISREEKGRSLASC-------PVKRLEIREFQGTLREMEMIKHFYY 407

Query: 371 QCKCLEVMIINCK 383
              CL+ M I  K
Sbjct: 408 CFLCLKEMEIYVK 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXQ6|FB193_ARATH Putative F-box protein At3g44060 OS=Arabidopsis thaliana GN=At3g44060 PE=4 SV=1

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 192/428 (44%), Gaps = 56/428 (13%)

Query: 8   LPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFV 67
           LPD +L +I+  LPTK  V+TSVLS+RW+ ++T   NL F D +  RP      ++  F 
Sbjct: 4   LPDDLLVQILYLLPTKEAVSTSVLSKRWRTLFTRSDNLDFHDPISGRPED----ILKSFN 59

Query: 68  DFVQTVLLRTHPGNIDSFCLHCS-RPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLL 126
           DFV + L      +I  F LH   +  +   ++ W+ +AL   V EL L+L  ++   L 
Sbjct: 60  DFVDSSLAFQGGKHIKKFSLHTKIKTFEYHVLDRWICNALEHGVSELHLHLMHESWPWLF 119

Query: 127 ---ETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHM-QLQNLDNSLTEKMFSACPC 182
                ++ S+TL  L L S     +    T  P +KVL +  +   D+ L+    +ACP 
Sbjct: 120 SIPSKVFNSSTLVKLSLGSRLYCPSFPPDTSLPALKVLLLDSILFRDDQLSNVFLAACPA 179

Query: 183 LEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHI 242
           LE+L++H  +         +I+S ++K  +L+V    ++ +    + + L  P++  L+ 
Sbjct: 180 LEDLTIHHTYHP------CVISSKSIKKLSLSV----NSGYYGAGYILTLDTPSVVDLYY 229

Query: 243 IADRLGSYVLEEMHCLHEAVVHISYAEWSQ--------------------------AVDQ 276
                 +  L  +  L +  + + + E +                           +  +
Sbjct: 230 SDSPRHNAPLFHLDSLAKVTLDLHFIENNNREVQNDADVKNLIREICNVKTLHLTCSTVE 289

Query: 277 CYDNFC----PSFSELTFLEVKLAGSGWRV-LPIILHSSPNLERLLVDKECWFEITKEQF 331
               +C    P F+ L  L       GWRV LP++L +SPNLE L++      ++ +  F
Sbjct: 290 VISVYCKGGLPMFNNLVELVFSSKKEGWRVLLPLLLENSPNLETLVLS-----DLHRYTF 344

Query: 332 GWIESDC-VPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQ 390
           G       +P     ++K + I++ QG     + I +FL    CLEVM +N  A +   +
Sbjct: 345 GRRHRFVGIPIPPNNQIKVLRIMQYQGSATVLKHISHFLLNMDCLEVMKVNVAAALDDPK 404

Query: 391 RKHLRQRL 398
           +  L + L
Sbjct: 405 KMQLTEDL 412

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKX3|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana GN=At2g04230 PE=2 SV=1

 Score =  115 bits (289), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 191/416 (45%), Gaps = 50/416 (12%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RISDLPDA+L +I+S LPT+N +ATSVLS+RW+ +WT L  L FD      P      + 
Sbjct: 14  RISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSN--FNPVFDDDNID 71

Query: 64  PGFV--DFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQL--YLGQ 119
           P     +  +T+ L   P  ++S  L      D   V  W+++A  + VR+L L  +  +
Sbjct: 72  PTMFSENVYKTLSLHKAPV-LESLHLSFEGRTDCLHVGIWIATAFARGVRKLVLDSFYQE 130

Query: 120 QNRVQLLETIYT-STTLEVLKLDSDCVINAPCVGTCFPTMKVLHM-QLQNLDNSLTEKMF 177
              V L   +++ + +LE+LKL     ++ P    C  +++ L++ Q+   D      + 
Sbjct: 131 DQTVTLPSVLFSYNDSLEILKLKCAIDLDFPS-RVCLKSLRKLYLDQVHFKDEESVCNLL 189

Query: 178 SACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNL 237
             CP L++L VH Y +AD +   F IAS +L+  T+    D        + + ++ AP L
Sbjct: 190 CGCPSLQDLVVHRYSNADVA--TFTIASPSLQRLTIE---DLRQEGGYGNGSYVINAPGL 244

Query: 238 QCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSE-------LTF 290
           + L+I      + V++   CL +  + +  A+ S       +N   S +        L+ 
Sbjct: 245 KYLNI------NGVIDIESCLIDKALELEEAKISNVSGITNENILESLTSAKRLILHLSP 298

Query: 291 LEVKLAGSG-----------------WRVLPIILHSSPNLERLLVDKECWFEITK---EQ 330
           LEVK+                     W +L I+L SSP L+ L +  + +    K   ++
Sbjct: 299 LEVKVPTGKIFDQLGCLELLTHEREWWNLLSIMLDSSPKLQILKL-TDVYLHDNKTNPDE 357

Query: 331 FGWIESDCVPQCLLQRVKKIEIIRVQGDE-DEQRVIEYFLQQCKCLEVMIINCKAL 385
             W    C P+CLL  ++    I  +    DE+ V  Y L+  + L+    + K +
Sbjct: 358 RKWNPPKCAPECLLFHLETFLWIGYEWQRGDEKEVATYILENARRLKKATFSTKRI 413

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXW6|FBL59_ARATH F-box/LRR-repeat protein At3g58930 OS=Arabidopsis thaliana GN=At3g58930 PE=2 SV=1

 Score =  115 bits (287), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 197/448 (43%), Gaps = 88/448 (19%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRP---PASAY 60
           R+S+LPD + G I+SFLP K+   TSVLS+ W ++W  +  L  DD   L P    A   
Sbjct: 3   RVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAERL 62

Query: 61  VVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLG-- 118
            +   FVDFV  VL       ID F L C   I    VN W+ + L + V +L L++   
Sbjct: 63  EIRQSFVDFVDRVLALQDDSPIDRFSLKCITGIHPDHVNRWICNVLQRGVSDLDLFIDFS 122

Query: 119 ----QQNRVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNLDNSL 172
               Q++   L + ++ S TL  LK+ +D  ++  C   GT  P +K L++    +    
Sbjct: 123 YEDTQEDEDMLPQEMFVSKTLVKLKIRNDRCVDWWCGKGGTSLPMLKSLYIDSDLILWGK 182

Query: 173 TEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTL------------TVVIDTD 220
            ++  S+ P LEEL + +    +   T   ++S++L+  ++            ++  DT 
Sbjct: 183 MKRFLSSFPVLEELRMASMEWKESHET---VSSASLRKLSILGTGCEDYVNPKSISFDTP 239

Query: 221 N----HFSEI------------------------DHTVMLKAPNLQCLHIIADRLGSYVL 252
           +    ++S++                        D    ++ PN   L    D  G+ VL
Sbjct: 240 SLLYLNYSDLVAEDYPLVNMGKLLEARINLIVKDDQIKRVREPNNDLLQ---DDAGNVVL 296

Query: 253 E------EMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKL-AGSGWRVLPI 305
           +       M+ +    +    A+  + +  C ++  P F+ L  L +K   G GW+ +P 
Sbjct: 297 QFGNVVKLMNGIQNIQILYLTADTLEVLSLCCESM-PVFNNLKTLGIKSEEGRGWQAVPA 355

Query: 306 ILHSSPNLERLLVDK-------------ECWFEITKEQFGWIESDCVPQCLLQRVKKIEI 352
           +L + P+LE L+++              +C   I++E  G   + C        VKK+EI
Sbjct: 356 LLRNCPHLEYLIIEGLLHNVTDKCGDACDC---ISREDKGRSLASC-------PVKKVEI 405

Query: 353 IRVQGDEDEQRVIEYFLQQCKCLEVMII 380
              +G   E  +I +FL+  KCL+ M I
Sbjct: 406 QGFRGTMREINMIGHFLRSFKCLKEMGI 433

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana GN=At5g56420 PE=2 SV=1

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 200/435 (45%), Gaps = 46/435 (10%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           R+S LPD  L +I+S+LPTK+ + TS+LS+RW+ +WT +  L++D RL            
Sbjct: 7   RLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLRL-------HDNTC 59

Query: 64  PGFVDFV-QTVLLRTHPG------NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQL- 115
           P F  FV +++LL   P        I S C    +      V  W+   + + VREL + 
Sbjct: 60  PRFSQFVDRSLLLHKAPTLESLNIKIGSICFTAEK-----DVGVWVRIGVDRFVRELSVS 114

Query: 116 YLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLH-MQLQNLDNSLTE 174
           Y   +  ++L + ++T +TL VLKL++  + +A C   CF ++K LH + ++ LD+    
Sbjct: 115 YCSGEEPIRLPKCLFTCSTLAVLKLENITLEDASCY-VCFQSLKTLHLLDVKYLDDQSLP 173

Query: 175 KMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKA 234
           ++ S+C  LE+L V       D+     + + +LK  +L     +   F   D   ++  
Sbjct: 174 RIISSCSSLEDLVVQRC--PGDNVKVVTVTAPSLKTLSLH---KSSQAFEGDDDGFLIDT 228

Query: 235 PNLQCLHIIADRLGSY-VLEEMHCLHEAVVHISYAEWSQAVDQ------------CYDNF 281
           P L+ +  I D  G +  +E M  + EA V + Y    + +                D  
Sbjct: 229 PKLKRVD-IEDYWGGFCYIENMPEVVEANVDVIYKNTEKLLGSITSVKRLALCLITSDAA 287

Query: 282 CPS---FSELTFLEV-KLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESD 337
            P+   FS+L  LE+   A   W +L  ++  SP L  L + ++        +  W +  
Sbjct: 288 YPAGTIFSQLVHLELCTCAPRWWDLLTRLIEDSPKLRVLKLRQKHIRRAPSPRASW-KQP 346

Query: 338 CVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQR 397
            +P+CLL  ++  +    +G + ++ V  + L+    L+  II+ K      ++  + + 
Sbjct: 347 ALPKCLLFHLETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTSTLLEKHEMLKD 406

Query: 398 LSHLKRGCDGSELLL 412
           LS   RG    ELL 
Sbjct: 407 LSSSPRGSSTCELLF 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 180/409 (44%), Gaps = 44/409 (10%)

Query: 6   SDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAY---VV 62
           S LPD ++  I+S LPTK   +TSVL+++W++++  + +L F+D   L P         +
Sbjct: 10  SKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKREKDGI 69

Query: 63  MPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNR 122
           +  F+DFV  VL       I  F L+    +D   V+ W+ + L + V  L L++  +  
Sbjct: 70  LRSFMDFVDRVLALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQRGVSHLALFMDFEEE 129

Query: 123 VQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPC 182
             L   I  S TL  LK      +         P +K L ++         + +  ACP 
Sbjct: 130 YSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTLVLESVEFGRGQFQTLLPACPV 189

Query: 183 LEELSVHAYFDADDSRTNFIIASSTLKHFTLT----------------VVIDTDNHFSEI 226
           LEEL +    + +    N I++SS+LK+  +T                V +D  ++ +E 
Sbjct: 190 LEELML---LNMEWKDRNVILSSSSLKNLKITSEDGCLGTLSFDTPNLVFLDYYDYVAED 246

Query: 227 DHTVMLKAPNLQCLHI----IADRLG---SYVLEEMHCLHEA-VVHISYAEWSQAVDQCY 278
              V LK  NL  + I     ADR+      V   +H +  A + HIS   +      C 
Sbjct: 247 YPIVNLK--NLVEVGINLVLTADRINRARDNVWNLIHGIQNAEIFHISPVTFEVLSLSC- 303

Query: 279 DNFCPSFSELTFLEVK-LAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESD 337
               P F  LT L ++ +   GW+ +P++L + PNLE L +           + G +  D
Sbjct: 304 -EAMPVFKNLTTLNIRTVMQQGWQAMPLLLKNCPNLETLYLGG--LLHTVTNKCGDV-CD 359

Query: 338 CVPQCLLQR------VKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMII 380
           C+P+    R      V KI+I   +G   E  +I++FL  C  L+ M I
Sbjct: 360 CIPRKKKGRSLMACPVNKIQIQGFRGTIREVHMIKHFLDFCPSLKEMEI 408

Arabidopsis thaliana (taxid: 3702)

>sp|O22232|FBL52_ARATH Putative F-box/LRR-repeat protein At3g44810 OS=Arabidopsis thaliana GN=At3g44810 PE=4 SV=2

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 187/435 (42%), Gaps = 51/435 (11%)

Query: 8   LPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYV---VMP 64
           LPD +L  ++S L TK   +TSVLS+RW+ ++    NL FDD +   P         V  
Sbjct: 12  LPDELLVHVLSSLETKQAASTSVLSKRWRTLFAVRRNLDFDDSIISHPEVGEQNMDDVQE 71

Query: 65  GFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRV- 123
            F DFV   L       I+ F L      D   V+ W+++AL   V EL L L    R  
Sbjct: 72  SFRDFVDKRLAFQGSVPINKFSLIYGDKHDDVRVDRWINTALEHGVSELHLCLTSVTRRL 131

Query: 124 -QLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDN-SLTEKMFSACP 181
            +    ++ STTL  L L ++  I      TC P +K+L +     D    +  + + CP
Sbjct: 132 HRFPSNVFRSTTLVKLTLGTNLFIVYFPSDTCLPVLKILVLDSIWFDRIKFSNVLLAGCP 191

Query: 182 CLEELSV-HAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCL 240
            LE+L++    F    +    +++S T+K  +L++V      F     TV L  PNL  L
Sbjct: 192 ALEDLTIDQKSFPGLPN----VVSSKTVK--SLSIVYKYSADFDWF-RTVALDTPNLVTL 244

Query: 241 HIIADRLGSYVLEEMHCLHEAVVHISYAE----------------------------WSQ 272
                    Y    +  L  A + + + E                             ++
Sbjct: 245 LYSTYARHRYRHCNLESLVNATLDLHFLENCDEAFEPNVTDLMIAVRNVQMLHLTSSATE 304

Query: 273 AVDQCYDNFCPSFSELTFLEVKLAGSG--WRV-LPIILHSSPNLERLLVDKECWFEITKE 329
            + QC     P F  L  L V L  +   W+V LP++L  SPNL +L +  E  F I + 
Sbjct: 305 VISQCCKGGLPMFKNLLVL-VFLGNTERVWKVFLPLLLEHSPNLTKLCL--ESLFLILQG 361

Query: 330 QFGWIESDCVPQCLLQRVKKIEIIRV---QGDEDEQRVIEYFLQQCKCLEVMIINCKALI 386
            +   + D   +  + R  K+ ++R+   QG E+E + I +FL + +CL+++ +N    I
Sbjct: 362 LYHGTDEDEFDEIHIPRSNKVNMLRIIQCQGTENELKHISHFLLKMECLQLVQVNFSETI 421

Query: 387 FKNQRKHLRQRLSHL 401
             +++  L + L  L
Sbjct: 422 VDSKKVQLTEDLMKL 436

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
147812093	607	hypothetical protein VITISV_040899 [Viti	0.946	0.644	0.307	1e-38
224114976	462	predicted protein [Populus trichocarpa]	0.932	0.833	0.277	7e-32
297819758	426	F-box family protein [Arabidopsis lyrata	0.953	0.924	0.292	4e-30
15229834	427	putative FBD-associated F-box protein [A	0.951	0.920	0.265	7e-28
15241216	430	FBD-associated F-box protein [Arabidopsi	0.917	0.881	0.268	3e-27
22328947	419	F-box/FBD/LRR-repeat protein [Arabidopsi	0.939	0.926	0.281	5e-27
297818864	423	hypothetical protein ARALYDRAFT_323113 [	0.888	0.867	0.270	2e-26
15231588	454	putative F-box/LRR-repeat protein [Arabi	0.876	0.797	0.281	7e-26
297803460	418	F-box family protein [Arabidopsis lyrata	0.937	0.925	0.265	4e-25
297796525	423	F-box family protein [Arabidopsis lyrata	0.946	0.924	0.269	2e-24

>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 55/446 (12%)

Query: 5   ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPA----SAY 60
           IS+LPD +L  I+SFLPTK  V TS+LS+RW+++W S+  L FDD L L P         
Sbjct: 12  ISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVELEER 71

Query: 61  VVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQ 120
           ++M  F +FV  VL  +    I  F L   R  +L SV  W+  AL + V+EL L+L   
Sbjct: 72  IIM--FQNFVDGVLRHSEVSCIKKFRLG-YRDNNLDSVYSWICIALERRVQELDLHLLID 128

Query: 121 NRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQ-LQNLDNSLTEKMFSA 179
            RV+L    +   TL V+KL     ++ P      P++K LH++ ++  D+   +K+ S 
Sbjct: 129 WRVELPPMFFICKTLVVVKLSCALFLDIPTT-VWLPSLKALHLKSVEYSDDDSIQKLLSG 187

Query: 180 CPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSE---IDHTVMLKAPN 236
           CP LEEL +    +  D++    +++ +LK   +    D   H  E    D+ V++ APN
Sbjct: 188 CPVLEELVIER--EERDNQWVVNVSNPSLKILRIFFFTDGFAHPYEQEDQDYKVVVDAPN 245

Query: 237 LQCLHIIADRLGSYVLEEMHCLHEAVVHI-----SYAEWSQAVDQCY------------- 278
           L+ L I       Y ++++  L +A + +      + E        Y             
Sbjct: 246 LEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLGRISN 305

Query: 279 -------------------DNFCPSFSELTFLE-VKLAGSGWRVLPIILHSSPNLERLLV 318
                              D   P+F  +T LE + + G  W  LP  LHSSPNLE L++
Sbjct: 306 VKCLSLTGVTLDSLSGTIGDYKLPTFHNMTRLEFLFIGGFNWDFLPNFLHSSPNLEALVI 365

Query: 319 DKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVM 378
           +     E+  E  GW+    VP CL+  +K+IEI R+ G++ E   +EY L+  + L+ M
Sbjct: 366 ETGYTNELIPE--GWLMPLQVPACLVLHLKEIEIRRIVGEDYELEAVEYLLKNAEVLQQM 423

Query: 379 IINCKALIFKNQRKHLRQRLSHLKRG 404
            I+C    + +Q   + ++L  L RG
Sbjct: 424 TIDCHE-SYMDQEFCVCKKLLGLPRG 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114976|ref|XP_002316907.1| predicted protein [Populus trichocarpa] gi|222859972|gb|EEE97519.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 209/450 (46%), Gaps = 65/450 (14%)

Query: 5   ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMP 64
           ISDLP+ I+G I+SFLPTK+ + T +LS+ W+ +W SL+N  FDDR        + ++  
Sbjct: 18  ISDLPNVIIGHILSFLPTKDALCTCILSKSWRELWRSLSNFDFDDRTW-----KSKIIFG 72

Query: 65  GFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQ 124
            F+D     L  +   +I  F L  +     S ++ W+S+A+  ++ EL+L++   + V 
Sbjct: 73  NFMDRF-CYLHNSRENSITKFRLRVNGSYPSSRMSAWISAAIKDNLEELKLWIYTADHVP 131

Query: 125 LLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQ-LQNLDNSLT-EKMFSACPC 182
           L   I++   L +L L     I+   VG  FP +KVLH+Q L  LD+  + EK+ +  P 
Sbjct: 132 LPRRIFSCEKLVILDLGYRIDIDLLGVGVHFPCLKVLHLQELPMLDDHASIEKLLAGSPV 191

Query: 183 LEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHI 242
           LEEL +    +  +SR    I SS+LK   +       +        + L  PNL+ L +
Sbjct: 192 LEELKIE--HEDCESRNVLRICSSSLKRLIIRFPFVAYDEKDPGCRELTLDTPNLELLKL 249

Query: 243 ---IADRLGSYVLEEMHCLHEAVVHISYAE------------------------------ 269
              ++++L   +L+  + L EA + ++Y                                
Sbjct: 250 TDLVSEKLN--MLQIPYSLVEAALSVAYKHVFTIQVDDYIDMAVQLLRPIMTIVKILRLC 307

Query: 270 -----------WSQAVDQ---CYDNFCPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLE 314
                       S AV +   C  N  P F  LT LE++ +G+  W VL  IL  SP LE
Sbjct: 308 DTTMRTSPLQTLSDAVHKKLPCVGNL-PDFQNLTRLEIEASGNDRWLVLHEILKCSPKLE 366

Query: 315 RLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKC 374
             ++ K+     T++   W   + VP+CL   +K IE +  + +  E  + EY ++    
Sbjct: 367 VFILYKDS----TEKTPRWRNPEFVPRCLRSSLKVIEYVGFESELGEIEMAEYLIKNALV 422

Query: 375 LEVMIINCKALIFKNQRKHLRQRLSHLKRG 404
           LE M I     +  + ++ + +RL+  +RG
Sbjct: 423 LEKMTIEYGWKMIHDFKERVAERLTECRRG 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819758|ref|XP_002877762.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297323600|gb|EFH54021.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 128/438 (29%), Positives = 207/438 (47%), Gaps = 44/438 (10%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RIS+L D +L +I S LPTK+ V T +LS+RWK +WT +  L FDD   L P  S Y   
Sbjct: 3   RISNLSDDLLLKIFSSLPTKDVVVTMLLSKRWKFLWTMVPKLRFDDEFELDP--SYYGRF 60

Query: 64  PGFVDFVQTVLLRTHPGNIDSFCLH-CSRPIDLSSVNFWLSSALMQSVRELQL-----YL 117
             +VD    VL R        F +  C    D+++   W+   +++ +REL++     Y 
Sbjct: 61  LKYVD-KSMVLNRAQVLETVKFDVGPCCSSEDIAT---WIRIGMVRHMRELEISHCEAYF 116

Query: 118 GQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQ-LQNLDNSLTEKM 176
            +   ++L +++YT   LEVLKL S  V+N P +  CFP++K LH+  ++        ++
Sbjct: 117 REHRSIKLPKSLYTYEKLEVLKLASTVVLNVP-IAVCFPSLKSLHLVCVEYKTKKSHRRL 175

Query: 177 FSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPN 236
            S CP LE+L +   +++   R+ F +   TL+  +   ++DT       D T ++ AP+
Sbjct: 176 LSGCPVLEDLVLDKSYNSFHVRS-FYVEIPTLQRLS---ILDTSGELYG-DFTFVVNAPS 230

Query: 237 LQCLHIIADRLGSYVLEE-MHCLHEAVVHISYAEWSQAVDQCYD----NFCPS------- 284
           L+  + + D  G   L + MH + EA + + Y    + +         + C S       
Sbjct: 231 LKYFNFV-DFYGDLCLRDTMHEVVEANIKVIYKNPKKLLGPLKSVKRLSLCLSASTTLHN 289

Query: 285 ---FSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDK-ECWFEITKE---QFGWI 334
              F +L  LE  L G     W +L  +L SSP L+ L + K EC      E   +  W 
Sbjct: 290 HMEFYQLVHLE--LCGDALMWWDLLTWMLESSPKLQVLKLYKCECEEHDYSEDPIEDHWE 347

Query: 335 ESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHL 394
           E   VP+CLL  +   E       E+E++V+ Y L+  + L+    +   L  K +R   
Sbjct: 348 EPSSVPECLLFHLNIFEWKYYNAGEEEKKVVAYILKNARQLKTAAFSAPYLYPKEERSWE 407

Query: 395 RQRLSHLKRGCDGSELLL 412
              L ++ R     +LLL
Sbjct: 408 LNELVYMARASSSCQLLL 425

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229834|ref|NP_190640.1| putative FBD-associated F-box protein [Arabidopsis thaliana] gi|75265626|sp|Q9SCQ5.1|FBD10_ARATH RecName: Full=Putative FBD-associated F-box protein At3g50710 gi|6561974|emb|CAB62440.1| putative protein [Arabidopsis thaliana] gi|332645179|gb|AEE78700.1| putative FBD-associated F-box protein [Arabidopsis thaliana]

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 205/440 (46%), Gaps = 47/440 (10%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RIS+L D +L +IVS LPTK+ V T +LS+RWK +W  +  L FDD   L P        
Sbjct: 3   RISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEPSYYG---- 58

Query: 64  PGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQL-----YLG 118
             F+ +V   ++      +++   +         +  W+   +++++REL++     Y  
Sbjct: 59  -RFLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYFR 117

Query: 119 QQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQ-LQNLDNSLTEKMF 177
           +   ++L +++YT   LEVLKL S  V+N P +  CFP++K LH+  ++        ++ 
Sbjct: 118 EHRSIKLPKSLYTYEKLEVLKLASTVVLNVP-IDVCFPSLKSLHLVCVEYKTKKSHRRLL 176

Query: 178 SACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNL 237
           S CP LEEL +   +++   R+ F +   TL+  +   ++DT       D T ++ AP L
Sbjct: 177 SGCPVLEELVLDKSYNSFHVRS-FYVEIPTLQSLS---ILDTSGELYG-DFTFVVNAPAL 231

Query: 238 QCLHIIADRLGSYVLEE-MHCLHEAVVHISYAEWS------QAVDQCYDNFCPS------ 284
           +  + + D  G   L + M  + +  + + Y          ++V +      PS      
Sbjct: 232 KYFNFV-DFYGDLCLRDNMPEVVDVNIKVIYRNPKKLLGPLKSVKRLSLCLSPSTTLHNH 290

Query: 285 --FSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKEC------WFEITKEQFGW 333
             F +L  LE  L G     W +L  +L SSP L+ L +  EC      + +   E+  W
Sbjct: 291 MEFYQLVHLE--LCGDALMWWDLLTWMLQSSPKLQVLKI-YECKCEEHDYLDDPIEE-HW 346

Query: 334 IESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIF-KNQRK 392
            E   VPQCLL  +   E       ++E++V+ Y L+  + L+    +  + ++ K +R 
Sbjct: 347 EEPSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKTATFSAASYLYPKEERS 406

Query: 393 HLRQRLSHLKRGCDGSELLL 412
                L ++ R     +LLL
Sbjct: 407 RELNELVYMARASSSCQLLL 426

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241216|ref|NP_200455.1| FBD-associated F-box protein [Arabidopsis thaliana] gi|75262697|sp|Q9FM87.1|FBD26_ARATH RecName: Full=Putative FBD-associated F-box protein At5g56440 gi|10177843|dbj|BAB11272.1| unnamed protein product [Arabidopsis thaliana] gi|332009382|gb|AED96765.1| FBD-associated F-box protein [Arabidopsis thaliana]

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 200/443 (45%), Gaps = 64/443 (14%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RIS LPD ++ +I+SF+PTK  V+T++LS+RW+++W  +  L + D              
Sbjct: 3   RISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRYLWKHVPKLDYRD-------------- 48

Query: 64  PGFVD--------FVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQL 115
           P  VD        FV   LL      +++  L  SR    S +  W+S A+ + VR L +
Sbjct: 49  PSLVDTEHWRASRFVDKFLLLHEAPVLETLHLSLSRNCPPSDIETWISVAISRRVRNLHI 108

Query: 116 --YLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSL 172
             Y+     ++L  ++YT  TL  L L  D  ++      CF ++KVL +       + +
Sbjct: 109 YRYIPSTGPIRLPRSLYTCETLVSLYLLLDFTVDDAPFMFCFRSLKVLVLLFAKFSSDEI 168

Query: 173 TEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVML 232
             ++ S CP LE L        +D+  NF IA+ +L+     + ID  +     D   ++
Sbjct: 169 VNRLLSGCPVLEGL---ILIRRNDNVKNFTIAAPSLQRL---IAIDCRSQVPGDDVGFVI 222

Query: 233 KAPNLQCLHII--ADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYD----------- 279
           KAP+L+ L ++  +   G   L +M  L +A + + + + S+    C             
Sbjct: 223 KAPSLKSLTLLNFSPHSGFRSLVKMPDLVKASIKVRHGD-SKMFMGCLTSTKRLALCLQP 281

Query: 280 --NFCP--SFSELTFLEVKLAGSGWRVLPIILHSSPNLERL-----------LVD--KEC 322
             + CP   F++L  L +     GW  L  IL+ +P L  L           L+D  K C
Sbjct: 282 PLDSCPIGVFNQLVSLSLCTCSLGWCRL--ILNHTPKLRVLRFEQRQAKFYQLLDPLKRC 339

Query: 323 WFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINC 382
                  Q  W +   VP+CL+  ++ +E I  +G E E++V+ Y L+  + L+ M I  
Sbjct: 340 CSSSVDVQTQWEQPSSVPKCLISSLETVEWIDYKGREVEKKVVMYLLENSRQLKTMAIRS 399

Query: 383 KALIFKNQRKHLRQRLSHLKRGC 405
                 N++  + Q LS + R C
Sbjct: 400 LKSTNDNEKLKMLQELSSIHRIC 422

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328947|ref|NP_194364.2| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana] gi|75244651|sp|Q8H1R7.1|FDL27_ARATH RecName: Full=F-box/FBD/LRR-repeat protein At4g26340 gi|23296372|gb|AAN13055.1| unknown protein [Arabidopsis thaliana] gi|332659787|gb|AEE85187.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 202/437 (46%), Gaps = 49/437 (11%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RIS L D +L +I+SF+P K+ VATS+LS+RW+ +W  ++ L +DD        S     
Sbjct: 3   RISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHTGDYKS----- 57

Query: 64  PGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYL---GQQ 120
             F  FV   LL  +   I    L+         +  W+  AL + +R+L++ +      
Sbjct: 58  --FSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSND 115

Query: 121 NRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL--DNSLTEKMFS 178
               L  ++YTS TLE L+L +  +++ P    C P++KVLH++  +   D SL   +F 
Sbjct: 116 ASFSLPSSLYTSDTLETLRLINFVLLDVPS-SVCLPSLKVLHLKTVDYEDDASLPSLLF- 173

Query: 179 ACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQ 238
            CP LEEL V  +    +    F++ S  L+  ++      D ++ + D  V +  P+L+
Sbjct: 174 GCPNLEELFVERHDQDLEMDVTFVVPS--LRRLSM-----IDKNYGQCDRYV-IDVPSLK 225

Query: 239 CLHIIADRLGSY-VLEEMHCLHEAVVHIS------YAEWSQAVDQ------CYDNFCPS- 284
            L+I  D +     +E M  L EA V I+      +     +V Q        +  CPS 
Sbjct: 226 YLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLRALTSVRQLSLCLSLSEVMCPSG 285

Query: 285 --FSELTFLEVKLAGSG-WRVLPIILHSSPNLERL-LVDKE-----CWFEITKEQFGWIE 335
             FS+L  L +     G W +L  +L  SP L+ L L+DK+     C  E      GW  
Sbjct: 286 IIFSQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKLIDKQHESGLCGIETP---IGWKL 342

Query: 336 SDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLR 395
              VP+CLL  ++  E I  +G   ++ V  Y L+   CL     + ++     ++ H+ 
Sbjct: 343 PSSVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACLRTAKFSPESTDV-GEKYHML 401

Query: 396 QRLSHLKRGCDGSELLL 412
           + L+ +      S+LL 
Sbjct: 402 KELASVPTASTSSKLLF 418

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818864|ref|XP_002877315.1| hypothetical protein ARALYDRAFT_323113 [Arabidopsis lyrata subsp. lyrata] gi|297323153|gb|EFH53574.1| hypothetical protein ARALYDRAFT_323113 [Arabidopsis lyrata subsp. lyrata]

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 202/451 (44%), Gaps = 84/451 (18%)

Query: 8   LPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFV 67
           LPD +L  I+SFLPTK  V+TS+LS+RW+ ++T   NL FDD +  RP      +   F 
Sbjct: 4   LPDDLLVHILSFLPTKQAVSTSLLSKRWRTLFTLSDNLDFDDPISERPED----IRKSFN 59

Query: 68  DFVQTVLLRTHPGNIDSFCLHCSRPIDLS--SVNFWLSSALMQSVRELQLYLGQQNRV-- 123
           DFV + L      +I  F L  +   +    +V+ W+  AL   V EL L+L  ++++  
Sbjct: 60  DFVDSSLAFQGGKHIKKFSLKHTEIYEEEEHNVDRWICKALEHGVSELHLHLHVKSKLWW 119

Query: 124 --QLLETIYTSTTLEVLKLDS--DCVINAPCVGTCFPTMKVL---------HMQLQNLDN 170
              +   ++TSTTL  L L +  DC    P   T  P +KVL         H QL N+  
Sbjct: 120 EFSIPSKVFTSTTLVKLSLGTGLDCPRLPP--DTSLPALKVLLLDSIFWFRHDQLSNV-- 175

Query: 171 SLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTV------------VID 218
                + +ACP LE+L++H  +    S   ++I+S ++K  ++T+             +D
Sbjct: 176 -----LLAACPALEDLTIHYEYYPGHS---YVISSKSIKKLSVTINSSYYVDQSSILTLD 227

Query: 219 TDN----HFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHE-------------- 260
           T N    ++S+       K+P  Q   +    L  + L++   +                
Sbjct: 228 TPNVADLYYSDYPRR---KSPRCQLDSVAKATLNLHFLKDYRQVKSDADVTDLISGIRNV 284

Query: 261 AVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVL-PIILHSSPNLERLLVD 319
             +H++       +  C D   P F+ L  L       GW+VL P++L  SPNL+ L+  
Sbjct: 285 KTLHLTIPTVKVILVCCKDEL-PVFNNLVDLVFSSKRQGWKVLLPLLLERSPNLKNLI-- 341

Query: 320 KECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMI 379
                         +    +P  L  ++K + I++ QG E E + I +FL   +CLEV+ 
Sbjct: 342 --------------LSFVGIPIPLNNQIKILRIMQYQGSETELKHISHFLLNMECLEVVE 387

Query: 380 INCKALIFKNQRKHLRQRLSHLKRGCDGSEL 410
           +N    ++  ++  L + L  L      S+L
Sbjct: 388 VNVAPTLYDPKKVRLTEDLLKLPTASSSSKL 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231588|ref|NP_191447.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75264354|sp|Q9LXR4.1|FBL56_ARATH RecName: Full=Putative F-box/LRR-repeat protein At3g58880 gi|7630083|emb|CAB88305.1| putative protein [Arabidopsis thaliana] gi|332646322|gb|AEE79843.1| putative F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 186/433 (42%), Gaps = 71/433 (16%)

Query: 5   ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYV--- 61
           +S LPD +LG I+S L TK    TS+LS+RW+++   +  L FDD   L P         
Sbjct: 5   VSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFLNPEEGKQTREG 64

Query: 62  VMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQN 121
               F+DFV  VL       I  F L C   +DL  +N W+ + L + V  + L +   +
Sbjct: 65  TRQSFIDFVDRVLALHGDSPIRKFSLKCKTGVDLDLLNQWICNVLQRGVLLIDLSMDLGH 124

Query: 122 RVQLLETIYTSTTLEVLKLDSDCVIN-APCVGTCFPTMKVLHM-QLQNLDNSLTEKMFSA 179
           R   +E I+ S TL  LKL S C I   P   +  P +K L +  +   D+   E++ SA
Sbjct: 125 RCMFIE-IFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSVSWSDSGQLERLLSA 183

Query: 180 CPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQC 239
           CP LE L++    +   S  N  ++ ++LK  T+  V       S   H      PNL C
Sbjct: 184 CPALEALNLA---NVHGSYPNATVSIASLKTLTIKSV-----SLSGPAHVFSFDTPNLLC 235

Query: 240 LH------------------------IIADRL---------GSYVLEEMHCLHEAVVHIS 266
           L+                        ++ DRL         G  +L E+  L   +  + 
Sbjct: 236 LNYTALFEDDYPLVNLEYLVEAQIKFVLTDRLIKLVSVRKNGLLMLSEVQKLIRGISSVR 295

Query: 267 YAEWS----QAVDQCYDNFCPSFSELTFLEVKLAGS-GWRVLPIILHSSPNLERLL---- 317
               S    Q + QC     P F+ LTFL ++ +    W+ +P++L + P LE L+    
Sbjct: 296 KLYLSPGTLQVLGQCSQAM-PVFNNLTFLVIESSMDIRWQAMPVLLKNCPRLETLVIKGG 354

Query: 318 ----VDKECWFE---ITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQ 370
               V  +C      I++E+ G   + C        VK++EI   QG   E  +I++F  
Sbjct: 355 LVHCVAADCGDACTCISREEKGRSLASC-------PVKRLEIREFQGTLREMEMIKHFYY 407

Query: 371 QCKCLEVMIINCK 383
              CL+ M I  K
Sbjct: 408 CFLCLKEMEIYVK 420

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803460|ref|XP_002869614.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297315450|gb|EFH45873.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 198/437 (45%), Gaps = 50/437 (11%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           RIS L D +L RI+S +PTK+ VATS+LS+RW+ +W  +  L ++D        +     
Sbjct: 3   RISQLSDDLLLRILSCVPTKDVVATSLLSKRWQFLWMLVPQLQYND-------INHSGDY 55

Query: 64  PGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLG---QQ 120
             F  FV   LL      I+   L+         +  W+  AL + +REL++ +    + 
Sbjct: 56  KNFSQFVYRSLLSNKASVIEHLHLNLGPECPAIDIGLWIGIALSRRLRELEINIRSSFEN 115

Query: 121 NRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSA 179
               L  ++YTS TLE L++ +  ++  P    C P++KVLH++  +  D++    + S 
Sbjct: 116 VSFSLPSSLYTSDTLETLRVINFVLLVVPS-SVCLPSLKVLHLKTVDYEDDASLPNLLSG 174

Query: 180 CPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQC 239
           CP LEEL +  +    DS  +F +   +L+  ++      D ++ +    V +  P+L+ 
Sbjct: 175 CPNLEELCLERH--DQDSEMDFTVVVPSLRRLSM-----MDENYVKCGRYV-IDVPSLKY 226

Query: 240 LHIIADRLGSY-VLEEMHCLHEAVVHISYAEWSQAVDQCY-----------------DNF 281
           L+I  + + +   +E M  L EA     Y E +Q V   +                 +  
Sbjct: 227 LNITDEAVYNVRQIENMPELTEA-----YVEITQGVTHKFLRALTTVRHLSLCLSLSEVM 281

Query: 282 CPS---FSELTFLEVKLAGSG-WRVLPIILHSSPNLERL-LVDKECWFEITKEQ-FGWIE 335
           CPS   F +L  L +     G W +L  +L  SP L  L L+DK       KE   GW  
Sbjct: 282 CPSGMIFYQLVHLNLYTFAQGWWDLLTYMLQDSPKLRFLKLIDKHDSGLCGKETPIGWKL 341

Query: 336 SDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLR 395
              VP+CLL  ++  E I  +G   ++ +  Y L+   CL     + ++     ++ H+ 
Sbjct: 342 PSSVPECLLFSLEAFEWIGYKGRRGDREMATYVLKNAACLSTAKFSPESTDV-GEKYHML 400

Query: 396 QRLSHLKRGCDGSELLL 412
           + L+ +      S+LL 
Sbjct: 401 KELASVPTASTSSKLLF 417

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796525|ref|XP_002866147.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297311982|gb|EFH42406.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 202/434 (46%), Gaps = 43/434 (9%)

Query: 4   RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
           R+S LPD  L +I+S+LPTK+ + TS+LS+RW+ +WT +  L++D    LR   + Y   
Sbjct: 7   RLSQLPDDFLLQILSWLPTKDVMVTSLLSKRWRFLWTLVPRLNYD----LRLHDNTYPRF 62

Query: 64  PGFVDFVQTVLLRTHPG------NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQL-Y 116
             FVD  +++LL   P       +I S C    +      V  W+   + + VREL + Y
Sbjct: 63  SQFVD--RSLLLHKAPTLESLNISIGSLCYTAEK-----DVGVWVRIGVDRFVRELNISY 115

Query: 117 LGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLH-MQLQNLDNSLTEK 175
              +  ++L + ++T TTL VLKL++  +++A C   CF ++K LH + ++ LD+    +
Sbjct: 116 CSGEEPIRLPKCLFTCTTLAVLKLENISLVDASCY-VCFQSVKTLHLLDVKYLDDQSLPR 174

Query: 176 MFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAP 235
           + S+C  LE+L V       D+     I +  LK  +L     +   F   D   ++ AP
Sbjct: 175 IISSCSSLEDLVVQRC--PGDNVKVVSITAPCLKTLSLH---KSSQAFEGDDDGFLIDAP 229

Query: 236 NLQCLHIIADRLGSY-VLEEMHCLHEAVVHISYAEWSQAVDQ------------CYDNFC 282
            L+ +  I D  G +  +E M  + EA V + Y    + +                D   
Sbjct: 230 RLKRVD-IEDYWGGFCYIENMPEVVEANVDVIYKNTEKLLGSLTSVKRLALCLITSDAAY 288

Query: 283 PS---FSELTFLEV-KLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDC 338
           P+   FS+L  LE+   A   W +L  +   SP L  L + ++        +  W +   
Sbjct: 289 PTGTVFSQLVHLELCTCAPRWWDLLTRLFEDSPKLRVLKLRQKHIRRAPSPRACWKQPVS 348

Query: 339 VPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRL 398
           +P+CLL  ++  +    +G + ++ V  + L+    L+  II+ K      ++  + + L
Sbjct: 349 LPKCLLFHLETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTSTLLEKHEMLKEL 408

Query: 399 SHLKRGCDGSELLL 412
           S   RG    ELL 
Sbjct: 409 SSSPRGSSTCELLF 422

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2101674	427	AT3G50710 "AT3G50710" [Arabido	0.956	0.925	0.276	1.4e-32
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.934	0.921	0.286	4.7e-32
TAIR|locus:2099054	454	AT3G58880 "AT3G58880" [Arabido	0.605	0.550	0.318	1e-29
TAIR|locus:2161053	422	AT5G56420 "AT5G56420" [Arabido	0.939	0.919	0.269	4.5e-27
TAIR|locus:505006162	422	AT1G32375 "AT1G32375" [Arabido	0.927	0.907	0.276	1.5e-26
TAIR|locus:2099119	482	AT3G58930 "AT3G58930" [Arabido	0.501	0.429	0.312	1.8e-26
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.595	0.537	0.303	3.9e-26
TAIR|locus:2101635	448	AT3G44810 [Arabidopsis thalian	0.648	0.598	0.284	5.8e-26
TAIR|locus:2081408	427	AT3G44060 "AT3G44060" [Arabido	0.479	0.463	0.314	9.3e-26
TAIR|locus:2077695	491	AT3G59000 "AT3G59000" [Arabido	0.602	0.507	0.313	2.5e-25

TAIR|locus:2101674 AT3G50710 "AT3G50710" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 121/438 (27%), Positives = 210/438 (47%)

Query:     4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
             RIS+L D +L +IVS LPTK+ V T +LS+RWK +W  +  L FDD   L P  S Y   
Sbjct:     3 RISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEFELEP--SYYGRF 60

Query:    64 PGFVDFVQTVLLRTHPGNIDSFCLH-CSRPIDLSSVNFWLSSALMQSVRELQL-----YL 117
               +VD    VL R        F +  C    D+++   W+   +++++REL++     Y 
Sbjct:    61 LKYVD-KSMVLNRAQVLETVKFNVGPCCSSEDIAT---WIRIGMVRNMRELEISHCEGYF 116

Query:   118 GQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEK-M 176
              +   ++L +++YT   LEVLKL S  V+N P +  CFP++K LH+         + + +
Sbjct:   117 REHRSIKLPKSLYTYEKLEVLKLASTVVLNVP-IDVCFPSLKSLHLVCVEYKTKKSHRRL 175

Query:   177 FSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPN 236
              S CP LEEL +   +++   R+ F +   TL+  +   ++DT       D T ++ AP 
Sbjct:   176 LSGCPVLEELVLDKSYNSFHVRS-FYVEIPTLQSLS---ILDTSGELYG-DFTFVVNAPA 230

Query:   237 LQCLHIIADRLGSYVLEE-MHCLHEAVVHISYAEWSQAVDQCYD----NFC--PS---FS 286
             L+  + + D  G   L + M  + +  + + Y    + +         + C  PS    +
Sbjct:   231 LKYFNFV-DFYGDLCLRDNMPEVVDVNIKVIYRNPKKLLGPLKSVKRLSLCLSPSTTLHN 289

Query:   287 ELTFLEV---KLAGSG---WRVLPIILHSSPNLERLLV-DKEC----WFEITKEQFGWIE 335
              + F ++   +L G     W +L  +L SSP L+ L + + +C    + +   E+  W E
Sbjct:   290 HMEFYQLVHLELCGDALMWWDLLTWMLQSSPKLQVLKIYECKCEEHDYLDDPIEEH-WEE 348

Query:   336 SDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIF-KNQRKHL 394
                VPQCLL  +   E       ++E++V+ Y L+  + L+    +  + ++ K +R   
Sbjct:   349 PSSVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKTATFSAASYLYPKEERSRE 408

Query:   395 RQRLSHLKRGCDGSELLL 412
                L ++ R     +LLL
Sbjct:   409 LNELVYMARASSSCQLLL 426

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 125/437 (28%), Positives = 207/437 (47%)

Query:     4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
             RIS L D +L +I+SF+P K+ VATS+LS+RW+ +W  ++ L +DD          Y   
Sbjct:     3 RISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSY----HTGDY--- 55

Query:    64 PGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNR- 122
               F  FV   LL  +   I    L+         +  W+  AL + +R+L++ +   +  
Sbjct:    56 KSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAIDIGLWIGFALTRRLRQLKINIRTSSND 115

Query:   123 --VQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL--DNSLTEKMFS 178
                 L  ++YTS TLE L+L +  +++ P    C P++KVLH++  +   D SL   +F 
Sbjct:   116 ASFSLPSSLYTSDTLETLRLINFVLLDVPS-SVCLPSLKVLHLKTVDYEDDASLPSLLFG 174

Query:   179 ACPCLEELSVHAYFDAD-DSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNL 237
              CP LEEL V  + D D +    F++ S  L+  ++      D ++ + D  V +  P+L
Sbjct:   175 -CPNLEELFVERH-DQDLEMDVTFVVPS--LRRLSMI-----DKNYGQCDRYV-IDVPSL 224

Query:   238 QCLHIIADRLGSY-VLEEMHCLHEAVVHISYA---EWSQAVDQ------CY---DNFCPS 284
             + L+I  D +     +E M  L EA V I+     ++ +A+        C    +  CPS
Sbjct:   225 KYLNITDDAVYDVRQIENMPELVEAHVDITQGVTHKFLRALTSVRQLSLCLSLSEVMCPS 284

Query:   285 ---FSELTFLEVKLAGSGW-RVLPIILHSSPNLERL-LVDKE-----CWFEITKEQFGWI 334
                FS+L  L +     GW  +L  +L  SP L+ L L+DK+     C  E      GW 
Sbjct:   285 GIIFSQLVHLNLSTVVKGWWDLLTSMLQDSPKLQSLKLIDKQHESGLCGIETP---IGWK 341

Query:   335 ESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHL 394
                 VP+CLL  ++  E I  +G   ++ V  Y L+   CL     + ++     ++ H+
Sbjct:   342 LPSSVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACLRTAKFSPESTDV-GEKYHM 400

Query:   395 RQRLSHLKRGCDGSELL 411
              + L+ +      S+LL
Sbjct:   401 LKELASVPTASTSSKLL 417

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099054 AT3G58880 "AT3G58880" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
 Identities = 84/264 (31%), Positives = 122/264 (46%)

Query:     5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYV--- 61
             +S LPD +LG I+S L TK    TS+LS+RW+++   +  L FDD   L P         
Sbjct:     5 VSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFLNPEEGKQTREG 64

Query:    62 VMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQN 121
                 F+DFV  VL       I  F L C   +DL  +N W+ + L + V  + L +   +
Sbjct:    65 TRQSFIDFVDRVLALHGDSPIRKFSLKCKTGVDLDLLNQWICNVLQRGVLLIDLSMDLGH 124

Query:   122 RVQLLETIYTSTTLEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSA 179
             R   +E I+ S TL  LKL S C I   P   +  P +K L +   +  D+   E++ SA
Sbjct:   125 RCMFIE-IFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSVSWSDSGQLERLLSA 183

Query:   180 CPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQC 239
             CP LE L++    +   S  N  ++ ++LK  T+  V       S   H      PNL C
Sbjct:   184 CPALEALNLA---NVHGSYPNATVSIASLKTLTIKSV-----SLSGPAHVFSFDTPNLLC 235

Query:   240 LHIIADRLGSYVLEEMHCLHEAVV 263
             L+  A     Y L  +  L EA +
Sbjct:   236 LNYTALFEDDYPLVNLEYLVEAQI 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161053 AT5G56420 "AT5G56420" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 117/434 (26%), Positives = 202/434 (46%)

Query:     4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
             R+S LPD  L +I+S+LPTK+ + TS+LS+RW+ +WT +  L++D RL            
Sbjct:     7 RLSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFLWTLVPRLNYDLRLHDN-------TC 59

Query:    64 PGFVDFV-QTVLLRTHPG------NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQL- 115
             P F  FV +++LL   P        I S C    +      V  W+   + + VREL + 
Sbjct:    60 PRFSQFVDRSLLLHKAPTLESLNIKIGSICFTAEK-----DVGVWVRIGVDRFVRELSVS 114

Query:   116 YLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHM-QLQNLDNSLTE 174
             Y   +  ++L + ++T +TL VLKL++  + +A C   CF ++K LH+  ++ LD+    
Sbjct:   115 YCSGEEPIRLPKCLFTCSTLAVLKLENITLEDASCY-VCFQSLKTLHLLDVKYLDDQSLP 173

Query:   175 KMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKA 234
             ++ S+C  LE+L V      D+ +   + A S LK  +L     +   F   D   ++  
Sbjct:   174 RIISSCSSLEDLVVQRC-PGDNVKVVTVTAPS-LKTLSLH---KSSQAFEGDDDGFLIDT 228

Query:   235 PNLQCLHIIADRLGSYV-LEEMHCLHEAVVHISYAEWSQAVDQ---------CY---DNF 281
             P L+ + I  D  G +  +E M  + EA V + Y    + +           C    D  
Sbjct:   229 PKLKRVDI-EDYWGGFCYIENMPEVVEANVDVIYKNTEKLLGSITSVKRLALCLITSDAA 287

Query:   282 CPS---FSELTFLEV-KLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESD 337
              P+   FS+L  LE+   A   W +L  ++  SP L  L + ++        +  W +  
Sbjct:   288 YPAGTIFSQLVHLELCTCAPRWWDLLTRLIEDSPKLRVLKLRQKHIRRAPSPRASW-KQP 346

Query:   338 CVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQR 397
              +P+CLL  ++  +    +G + ++ V  + L+    L+  II+ K      ++  + + 
Sbjct:   347 ALPKCLLFHLETFKWELYEGSQKQKEVATFILKHAIRLKTAIISPKPTSTLLEKHEMLKD 406

Query:   398 LSHLKRGCDGSELL 411
             LS   RG    ELL
Sbjct:   407 LSSSPRGSSTCELL 420

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006162 AT1G32375 "AT1G32375" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 118/427 (27%), Positives = 200/427 (46%)

Query:     4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVM 63
             ++S LP+A+L RI+S L  K+ V+T VLS+RW+ +W  +  L +DD       A  Y   
Sbjct:     3 KLSQLPEALLVRILSLLSAKDVVSTMVLSKRWQFLWMLVPKLIYDDSY----QAIEYGSF 58

Query:    64 PGFVDFVQTVLLRTHPGNI-DSFCLHCSRP-IDLSSVNFWLSSALMQSVRELQLYLGQQN 121
               FVD   T+    H   + D+      +       +  W+ +A    +REL + + + N
Sbjct:    59 SRFVDRSFTL----HDAQVLDTLHFKLGKTSCGTGDIRVWIKTAEKSCLRELIIEIDKSN 114

Query:   122 R----VQLLETIYTSTTLEV-LKLDSDCVINAPCVGTCFPTMKVLHM-QLQNLDNSLTEK 175
                  V L  ++YT   + V LKL++  +++A      FP++K L +  ++   + L + 
Sbjct:   115 SDNSSVVLPRSLYTCCRMLVTLKLNNAVLVDATS-SFSFPSLKTLSLVSMKFPGDELIKM 173

Query:   176 MFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAP 235
             + S CP LE+L V       D+ T F +  S+LK     V+ +T+      D   ++  P
Sbjct:   174 LLSNCPVLEDLVVKRC--PYDNVTTFTVRVSSLK---CLVLHETELASINADCGFVIDTP 228

Query:   236 NLQCLHIIADRLGSYVLEE-MHCLHEAVVHISYAEWSQ------AVDQCYDNFC-PS--- 284
             +L+CL I   R G  V+E  M  + +A V  SY    Q      +V + Y   C PS   
Sbjct:   229 SLECLDIEDGRGGFCVIENNMTKVVKANVCNSYVHTQQLMGSISSVKRLY--VCIPSSKD 286

Query:   285 -------FSELTFLEVKLAGSGW-RVLPIILHSSPNLERLLVDKECWFEITKEQFGWIES 336
                    F  L  L +    + W  +L  +L  SP L  L + K   +   + +  W E 
Sbjct:   287 AYPVGSVFHCLVRLTICTCETEWLNLLMCVLRDSPKLRELKLVKNHVYRSHQPRPCWNEP 346

Query:   337 DCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQ 396
               VP+CLL  ++ +E ++ +G E+E+ V  + L+   CL+ + I+ K+    N++  + +
Sbjct:   347 SAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLKKVTISSKSTDI-NKKFEMLK 405

Query:   397 RLSHLKR 403
              LS L R
Sbjct:   406 ELSLLFR 412

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099119 AT3G58930 "AT3G58930" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
 Identities = 69/221 (31%), Positives = 111/221 (50%)

Query:     4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPP---ASAY 60
             R+S+LPD + G I+SFLP K+   TSVLS+ W ++W  +  L  DD   L P    A   
Sbjct:     3 RVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAERL 62

Query:    61 VVMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLG-- 118
              +   FVDFV  VL       ID F L C   I    VN W+ + L + V +L L++   
Sbjct:    63 EIRQSFVDFVDRVLALQDDSPIDRFSLKCITGIHPDHVNRWICNVLQRGVSDLDLFIDFS 122

Query:   119 ----QQNRVQLLETIYTSTTLEVLKLDSDCVINAPCV--GTCFPTMKVLHMQLQNLDNSL 172
                 Q++   L + ++ S TL  LK+ +D  ++  C   GT  P +K L++    +    
Sbjct:   123 YEDTQEDEDMLPQEMFVSKTLVKLKIRNDRCVDWWCGKGGTSLPMLKSLYIDSDLILWGK 182

Query:   173 TEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTL 213
              ++  S+ P LEEL + A  +  +S     ++S++L+  ++
Sbjct:   183 MKRFLSSFPVLEELRM-ASMEWKESHET--VSSASLRKLSI 220

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
 Identities = 81/267 (30%), Positives = 134/267 (50%)

Query:     5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLA--NLSFDDRLCLRPPASAYVV 62
             IS+LP+ +L +++ +LPTK+ V +SVLS RW+++W  +   NLS+ D   +R   S Y  
Sbjct:    20 ISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYCD-FHVRNTFS-YDH 77

Query:    63 MPGFVDFVQTVLLRTHPGNIDSFCLHCS-----RPIDLSSVNFWLSSALMQSVRELQLYL 117
                F+ FV + +       + SF L         P  L+ +  W++S + + V+ L +  
Sbjct:    78 NT-FLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEP-KLALIRRWINSVVSRKVKYLGVLD 135

Query:   118 GQ-QN-RVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTE 174
                 N   ++  T+YT  TL  L LD   + +   V    P++K LH+ +    D+   E
Sbjct:   136 DSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKFVS--LPSLKELHLSIVKFADHMALE 193

Query:   175 KMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKA 234
              + S CP LE L+++  F  DD     + + S L   + T V DTD   +E D  V + A
Sbjct:   194 TLISQCPVLENLNINRSF-CDDFEFTCVRSQSLL---SFTHVADTDEMLNE-DLVVAIDA 248

Query:   235 PNLQCLHIIADRLGSYVLEEMHCLHEA 261
             P L+ L +   R+ S++L ++  L EA
Sbjct:   249 PKLKYLRLSDHRIASFILNDLASLVEA 275

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101635 AT3G44810 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 5.8e-26, Sum P(2) = 5.8e-26
 Identities = 82/288 (28%), Positives = 130/288 (45%)

Query:     8 LPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYV---VMP 64
             LPD +L  ++S L TK   +TSVLS+RW+ ++    NL FDD +   P         V  
Sbjct:    12 LPDELLVHVLSSLETKQAASTSVLSKRWRTLFAVRRNLDFDDSIISHPEVGEQNMDDVQE 71

Query:    65 GFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRV- 123
              F DFV   L       I+ F L      D   V+ W+++AL   V EL L L    R  
Sbjct:    72 SFRDFVDKRLAFQGSVPINKFSLIYGDKHDDVRVDRWINTALEHGVSELHLCLTSVTRRL 131

Query:   124 -QLLETIYTSTTLEVLKLDSDC-VINAPCVGTCFPTMKVLHMQLQNLDN-SLTEKMFSAC 180
              +    ++ STTL  L L ++  ++  P   TC P +K+L +     D    +  + + C
Sbjct:   132 HRFPSNVFRSTTLVKLTLGTNLFIVYFPS-DTCLPVLKILVLDSIWFDRIKFSNVLLAGC 190

Query:   181 PCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCL 240
             P LE+L++     +     N +++S T+K  +L++V      F     TV L  PNL  L
Sbjct:   191 PALEDLTIDQ--KSFPGLPN-VVSSKTVK--SLSIVYKYSADFDWF-RTVALDTPNLVTL 244

Query:   241 HIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSEL 288
                      Y     HC  E++V+ +       ++ C + F P+ ++L
Sbjct:   245 LYSTYARHRY----RHCNLESLVNATLD--LHFLENCDEAFEPNVTDL 286

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081408 AT3G44060 "AT3G44060" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 9.3e-26, Sum P(2) = 9.3e-26
 Identities = 67/213 (31%), Positives = 109/213 (51%)

Query:     8 LPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFV 67
             LPD +L +I+  LPTK  V+TSVLS+RW+ ++T   NL F D +  RP      ++  F 
Sbjct:     4 LPDDLLVQILYLLPTKEAVSTSVLSKRWRTLFTRSDNLDFHDPISGRPED----ILKSFN 59

Query:    68 DFVQTVLLRTHPGNIDSFCLHCS-RPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLL 126
             DFV + L      +I  F LH   +  +   ++ W+ +AL   V EL L+L  ++   L 
Sbjct:    60 DFVDSSLAFQGGKHIKKFSLHTKIKTFEYHVLDRWICNALEHGVSELHLHLMHESWPWLF 119

Query:   127 ET---IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQ-LQNLDNSLTEKMFSACPC 182
                  ++ S+TL  L L S     +    T  P +KVL +  +   D+ L+    +ACP 
Sbjct:   120 SIPSKVFNSSTLVKLSLGSRLYCPSFPPDTSLPALKVLLLDSILFRDDQLSNVFLAACPA 179

Query:   183 LEELSVHAYFDADDSRTNFIIASSTLKHFTLTV 215
             LE+L++H  +         +I+S ++K  +L+V
Sbjct:   180 LEDLTIHHTYHP------CVISSKSIKKLSLSV 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077695 AT3G59000 "AT3G59000" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
 Identities = 85/271 (31%), Positives = 128/271 (47%)

Query:     4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYV-- 61
             R+  LPD +L  I+SFL TK    TS+LS+RW+++   + NL+FDD + L P        
Sbjct:     3 RVGSLPDELLSHILSFLTTKEAALTSLLSKRWRYLIAFVPNLAFDDIVFLHPEEGKPERD 62

Query:    62 -VMPGFVDFVQTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLY--LG 118
              +   F+DFV  VL       I  F L C   +D   V+ W+S+ L + V EL L   LG
Sbjct:    63 EIRQSFMDFVDRVLALQAESPIKKFSLKCRIGVDSDRVDGWISNVLNRGVSELDLLIILG 122

Query:   119 Q--QNRVQLLETIYTSTTLEVLKLDSDCVINAPCV-GTCF-PTMKVLHMQLQNLDNSLTE 174
                ++  +L    + S TL  +KL+  C I+   V G+ F P +K L +          E
Sbjct:   123 MTMEDSYRLSPKGFASKTL--VKLEIGCGIDISWVAGSIFLPMLKTLVLDSVWFYVDKFE 180

Query:   175 KMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKA 234
              +  A P LEEL +    D +   ++  I++++LK  TLT  ID+D H      T     
Sbjct:   181 TLLLALPALEELVL---VDVNWLDSDVTISNASLK--TLT--IDSDGHLG----TFSFDT 229

Query:   235 PNLQCLHIIADRLGSYVLEEMHCLHEAVVHI 265
             P+L            Y + +M  L EA + +
Sbjct:   230 PSLVYFCYSDYAAEDYPVVKMENLREARIFL 260

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110937 hypothetical protein (457 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
pfam08387	51	pfam08387, FBD, FBD	1e-07
pfam00646	48	pfam00646, F-box, F-box domain	3e-04
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	3e-04

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 333 WIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINC 382
           W +   VP+CLL  ++ +E    +G+E+E  + +Y L+  + L+ M I+ 
Sbjct: 2   WNQPSSVPECLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTISL 51

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 4  RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDR 50
           + DLPD +L  I+S L  K+ +  S++S+RW+ +  SL        
Sbjct: 2  SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 341 QCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMII 380
           +CLL  ++ +EI   +G E+E+ +++YFL+   CL+ + I
Sbjct: 1   ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTI 40

Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.67
KOG4341	483	consensus F-box protein containing LRR [General fu	99.58
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.45
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.25
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.66
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.25
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.22
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.19
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.09
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.82
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.76
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.71
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.39
KOG4341	483	consensus F-box protein containing LRR [General fu	97.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.12
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.03
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.02
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.86
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.17
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.14
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.18
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.18
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.2
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.46
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.26
PLN03150	623	hypothetical protein; Provisional	92.73
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	92.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.78
KOG2997	366	consensus F-box protein FBX9 [General function pre	90.61
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.58
PRK15386	426	type III secretion protein GogB; Provisional	88.63
PRK15386	426	type III secretion protein GogB; Provisional	87.99
KOG0472	565	consensus Leucine-rich repeat protein [Function un	87.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.27
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.63
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.56
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	84.66
PLN03150	623	hypothetical protein; Provisional	84.23

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=5.1e-19  Score=154.64  Aligned_cols=214  Identities=19%  Similarity=0.157  Sum_probs=147.3

Q ss_pred             CCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhccC---eeeeecCCCCCCCCccccccchHHHHHHHHHhccCCCC
Q 046658            5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLA---NLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPGN   81 (413)
Q Consensus         5 is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~~~---~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~   81 (413)
                      +..||||++..|||.|+.+|..+.+.|||||.++.+.-.   .+++....+.+              .+...+.++ |  
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p--------------~~l~~l~~r-g--  160 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP--------------DVLGRLLSR-G--  160 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh--------------hHHHHHHhC-C--
Confidence            467999999999999999999999999999997654333   23333333321              122223222 2  


Q ss_pred             cceEEeeecCCCCcccHHHHHHHH--HhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcc
Q 046658           82 IDSFCLHCSRPIDLSSVNFWLSSA--LMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTM  158 (413)
Q Consensus        82 l~~l~l~~~~~~~~~~~~~wl~~a--~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L  158 (413)
                      |..|++.-....++    +...++  ++..+++++++...-..-.+...+..|..|+.|+|.|....+.-. ..+.-.+|
T Consensus       161 V~v~Rlar~~~~~p----rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L  236 (419)
T KOG2120|consen  161 VIVFRLARSFMDQP----RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL  236 (419)
T ss_pred             eEEEEcchhhhcCc----hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence            55555553222222    222222  345799999997665444555666779999999999987655321 34567889


Q ss_pred             cEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec-CCCCcceEEEecCccceeEEEeeecCCCCCCCC---cceEEEe
Q 046658          159 KVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD-ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEI---DHTVMLK  233 (413)
Q Consensus       159 ~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~---~~~~~~~  233 (413)
                      +.|+|+.+.. +..++.-++++|..|.+|.+.+|.. .+.+...+...+++|+.|+++     +|...-+   ...+.-.
T Consensus       237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls-----G~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS-----GYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh-----hhHhhhhhhHHHHHHHh
Confidence            9999999987 9999999999999999999999987 333433233346899999999     8765421   1223446


Q ss_pred             cCceeEEEEee
Q 046658          234 APNLQCLHIIA  244 (413)
Q Consensus       234 ~P~L~~L~~~~  244 (413)
                      +|+|..|++++
T Consensus       312 cp~l~~LDLSD  322 (419)
T KOG2120|consen  312 CPNLVHLDLSD  322 (419)
T ss_pred             CCceeeecccc
Confidence            78888888887

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.58  E-value=1e-17  Score=152.84  Aligned_cols=345  Identities=17%  Similarity=0.178  Sum_probs=221.2

Q ss_pred             CCChHHHHHHhcCCCcccchhhcccchhhHHH------HhccCeeeeecCCCCCCCCccccccchHHHHHHHHHhccCCC
Q 046658            7 DLPDAILGRIVSFLPTKNTVATSVLSRRWKHV------WTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPG   80 (413)
Q Consensus         7 ~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l------~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~   80 (413)
                      .||.+++.+|||+|+++..++++.+|+-|..+      |..+.-.+|..+.          +     ..|-..+..|.|.
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv----------~-----g~VV~~~~~Rcgg  138 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV----------D-----GGVVENMISRCGG  138 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC----------C-----CcceehHhhhhcc
Confidence            49999999999999999999999999999975      4444433332211          1     2233444556667


Q ss_pred             CcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcc-eeeecCccccccccccEEEeCCccccc-c--CCCcccCC
Q 046658           81 NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCVIN-A--PCVGTCFP  156 (413)
Q Consensus        81 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~-~--~~~~~~~~  156 (413)
                      .++.++++.........+......  ++++++|.+..+.. +.-.+-.....|+.|++|.|.+|.... .  ...+.+||
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~--CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASN--CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhh--CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            799999998876655545544444  67898887775432 111122222358899999998874332 1  11466899


Q ss_pred             cccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcce--EEEecCccceeEEEeeecCCCCCCCCcceEE--
Q 046658          157 TMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTN--FIIASSTLKHFTLTVVIDTDNHFSEIDHTVM--  231 (413)
Q Consensus       157 ~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~--~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~--  231 (413)
                      +|++|+++++.- .++.++.+..+|..|+++.+++|.. ...+..  ....++-+.++++.     .|...++...+.  
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e-~~le~l~~~~~~~~~i~~lnl~-----~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE-LELEALLKAAAYCLEILKLNLQ-----HCNQLTDEDLWLIA  290 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc-ccHHHHHHHhccChHhhccchh-----hhccccchHHHHHh
Confidence            999999999987 7788999999999999998888877 222221  22344567777766     775544322222  


Q ss_pred             EecCceeEEEEeecccce----e-eeecCCCceEEEEEeecceeEEEecccCcccC-CCCCCeeEEEEEeCCCC-hhhHH
Q 046658          232 LKAPNLQCLHIIADRLGS----Y-VLEEMHCLHEAVVHISYAEWSQAVDQCYDNFC-PSFSELTFLEVKLAGSG-WRVLP  304 (413)
Q Consensus       232 ~~~P~L~~L~~~~~~~~~----~-~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~-p~~~~L~~L~l~~~~~~-~~~l~  304 (413)
                      -.+..|+.|.++++....    + ...+.++|+.+.+.-+.     .++...-.++ ..+..|+.|.+..+... ...+.
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~-----~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ-----QFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc-----hhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence            235667888888754421    1 12456677666553211     0110000111 14667999999998876 44589


Q ss_pred             HHHhcCCCCceEEeccc-cceecccccCCccccCccCcccccceeEEEEEeecCCHhHHHHHHHHHhcCCCCceEEEEee
Q 046658          305 IILHSSPNLERLLVDKE-CWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCK  383 (413)
Q Consensus       305 ~ll~~~p~L~~L~i~~~-~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~l~~~ll~~a~~Le~l~i~~~  383 (413)
                      ++-.+||.|+.|.++.. ..++.+      ........|...+|+.+++.+-.....  +..+ .+.+.++||++.++..
T Consensus       366 sls~~C~~lr~lslshce~itD~g------i~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le-~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEG------IRHLSSSSCSLEGLEVLELDNCPLITD--ATLE-HLSICRNLERIELIDC  436 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhh------hhhhhhccccccccceeeecCCCCchH--HHHH-HHhhCcccceeeeech
Confidence            99999999999999841 122221      111223456677888888887765422  2233 4567889999888877


Q ss_pred             cccch
Q 046658          384 ALIFK  388 (413)
Q Consensus       384 ~~~~~  388 (413)
                      ++..+
T Consensus       437 q~vtk  441 (483)
T KOG4341|consen  437 QDVTK  441 (483)
T ss_pred             hhhhh
Confidence            76655

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.45  E-value=4.6e-13  Score=96.24  Aligned_cols=72  Identities=25%  Similarity=0.530  Sum_probs=64.5

Q ss_pred             cccccceeEEEEEeecCCHhHHHHHHHHHhcCCCCceEEEEeecccchhhHHHHHHHHhcCcCCCCCceEEeC
Q 046658          341 QCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKALIFKNQRKHLRQRLSHLKRGCDGSELLLL  413 (413)
Q Consensus       341 ~c~~~~L~~v~i~~~~~~~~~~~l~~~ll~~a~~Le~l~i~~~~~~~~~~~~~~~~~l~~~~r~s~~~~~~~~  413 (413)
                      +|+.++|++|+|.+|.|...|+++++|++++|+.||+|+|........ ...++.++|..++|||++|+|.|.
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~-~~~~i~~~L~~~~~aS~~c~i~~~   72 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDD-EKLEILKELLSLPRASSSCQVQFL   72 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCcc-HHHHHHHHHHhCcCCCCceEEEeC
Confidence            377789999999999999999999999999999999999999776554 446788999999999999999874

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.25  E-value=1.1e-11  Score=81.79  Aligned_cols=51  Identities=37%  Similarity=0.692  Sum_probs=48.1

Q ss_pred             CccccCccCcccccceeEEEEEeecCCHhHHHHHHHHHhcCCCCceEEEEe
Q 046658          332 GWIESDCVPQCLLQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINC  382 (413)
Q Consensus       332 ~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~l~~~ll~~a~~Le~l~i~~  382 (413)
                      .|.++..+++|+.+||+.|+|.+|.|...|+++++|+++||+.||+|+|..
T Consensus         1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen    1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence            487888899999999999999999999999999999999999999999963

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.66  E-value=1.6e-08  Score=65.83  Aligned_cols=36  Identities=39%  Similarity=0.723  Sum_probs=31.7

Q ss_pred             CCCCChHHHHHHhcCCCcccchhhcccchhhHHHHh
Q 046658            5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWT   40 (413)
Q Consensus         5 is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~   40 (413)
                      |+.||+|++.+||++|+.+|.++++.|||+|+.+..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            678999999999999999999999999999998654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.42  E-value=3.8e-07  Score=98.88  Aligned_cols=147  Identities=14%  Similarity=0.195  Sum_probs=79.3

Q ss_pred             CCcEEEEEEECcceeeecCcccc-ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      ..++.|+++...- ...+|..++ .+++|++|+|++|...... ....+++|++|+|.++.+... +...+..++.|+.|
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L  169 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSI-PRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCcccccc-CccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence            5677777764432 225666655 6777888888777554322 234577777777777765321 22334567777777


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEE
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVV  263 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i  263 (413)
                      ++.+|........ .....++|+.|.+.     +|.............++|+.|++.++...   ...+.++++|+.+++
T Consensus       170 ~L~~n~l~~~~p~-~~~~l~~L~~L~L~-----~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        170 DLGGNVLVGKIPN-SLTNLTSLEFLTLA-----SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             ECccCcccccCCh-hhhhCcCCCeeecc-----CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            7777654111111 11234567777776     65433211112224556666666654331   223455566666555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.25  E-value=7e-08  Score=87.32  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             cceEEeeecCCCCcccHHHHHHHHHhC--CcEEEEEE--ECcceeeecCccccccccccEEEeCCccccccCCCcccCCc
Q 046658           82 IDSFCLHCSRPIDLSSVNFWLSSALMQ--SVRELQLY--LGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPT  157 (413)
Q Consensus        82 l~~l~l~~~~~~~~~~~~~wl~~a~~~--~v~~L~l~--~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  157 (413)
                      +..+.+.  ...-+....+|+....+.  .+++..++  +..+....+|..+-..                .....++|+
T Consensus        32 ~~~l~ls--gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l----------------~~aL~~~~~   93 (382)
T KOG1909|consen   32 LTKLDLS--GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML----------------SKALLGCPK   93 (382)
T ss_pred             eEEEecc--CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH----------------HHHHhcCCc
Confidence            5555554  344556788998877653  44544444  1222233333321100                003456778


Q ss_pred             ccEEEeeeeEe---ChhhHHHHhccCCccceEEEEeeec
Q 046658          158 MKVLHMQLQNL---DNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       158 L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      |++|+|++..+   +...++.++++|..|++|.|.+|..
T Consensus        94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            88888888887   4456889999999999999999987

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.22  E-value=1.7e-06  Score=93.95  Aligned_cols=148  Identities=17%  Similarity=0.155  Sum_probs=88.3

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccc-cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      .+++.|++..+.- ...+|..+..+++|++|+|.+|.... .|.....+++|++|+|.++.+... +...+..++.|+.|
T Consensus       188 ~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L  265 (968)
T PLN00113        188 TSLEFLTLASNQL-VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYL  265 (968)
T ss_pred             cCCCeeeccCCCC-cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc-cChhHhCCCCCCEE
Confidence            5778888875432 23467777778888888888876543 343566788888888887766322 33345667888888


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEE
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVV  263 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i  263 (413)
                      .+.+|...+.... .....++|+.|.+.     +|.............++|+.|++.++...   ...+.++++|+.+.+
T Consensus       266 ~L~~n~l~~~~p~-~l~~l~~L~~L~Ls-----~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        266 FLYQNKLSGPIPP-SIFSLQKLISLDLS-----DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             ECcCCeeeccCch-hHhhccCcCEEECc-----CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence            8887765111111 11223567777777     66543222222234566777776664332   223455666666655

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.21  E-value=3.6e-07  Score=59.68  Aligned_cols=38  Identities=42%  Similarity=0.746  Sum_probs=31.6

Q ss_pred             CCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhcc
Q 046658            5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSL   42 (413)
Q Consensus         5 is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~~   42 (413)
                      |++||+|++.+||++|+.+|.++++.|||+|+.+....
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            56899999999999999999999999999999876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=2e-07  Score=86.75  Aligned_cols=134  Identities=21%  Similarity=0.194  Sum_probs=87.4

Q ss_pred             CCcEEEEEEECc-ceeeecCccccccccccEEEeCCccccccCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658          108 QSVRELQLYLGQ-QNRVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE  184 (413)
Q Consensus       108 ~~v~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  184 (413)
                      .++++|+++..- .....+-..+-..|+|+.|+|+.+....+-.  ....+++||+|.|.+|.++..++.+++..||.|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            466666666211 1122222223345889999998876543321  3457899999999999999999999999999999


Q ss_pred             eEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCc-ceEEEecCceeEEEEeeccc
Q 046658          185 ELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEID-HTVMLKAPNLQCLHIIADRL  247 (413)
Q Consensus       185 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~-~~~~~~~P~L~~L~~~~~~~  247 (413)
                      .|.++.+.. --....-.-...+|++|++.     +....+.. .......|+|..|.++.+..
T Consensus       226 ~L~L~~N~~-~~~~~~~~~i~~~L~~LdLs-----~N~li~~~~~~~~~~l~~L~~Lnls~tgi  283 (505)
T KOG3207|consen  226 VLYLEANEI-ILIKATSTKILQTLQELDLS-----NNNLIDFDQGYKVGTLPGLNQLNLSSTGI  283 (505)
T ss_pred             Hhhhhcccc-cceecchhhhhhHHhhcccc-----CCcccccccccccccccchhhhhccccCc
Confidence            999999854 10111001123579999999     76654322 23445678888887777533

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.09  E-value=2.9e-07  Score=86.55  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=31.9

Q ss_pred             ccccccccEEEeCCcccccc-CCCcccC---CcccEEEeeeeEeChhhHHH---HhccC-CccceEEEEeeec
Q 046658          129 IYTSTTLEVLKLDSDCVINA-PCVGTCF---PTMKVLHMQLQNLDNSLTEK---MFSAC-PCLEELSVHAYFD  193 (413)
Q Consensus       129 ~~~~~~L~~L~L~~~~~~~~-~~~~~~~---~~L~~L~L~~~~~~~~~l~~---l~~~c-p~Le~L~l~~~~~  193 (413)
                      +..+++|+.|++.+|..... +.....+   ++|++|++.++.+++.....   .+..+ +.|++|.+.+|..
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  149 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL  149 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence            33455666666666544311 1111122   33666666666664333322   23334 6666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.04  E-value=2.1e-06  Score=53.88  Aligned_cols=34  Identities=44%  Similarity=0.732  Sum_probs=31.6

Q ss_pred             CChHHHHHHhcCCCcccchhhcccchhhHHHHhc
Q 046658            8 LPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTS   41 (413)
Q Consensus         8 LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~   41 (413)
                      ||+|++.+||++|+.+|.++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.00  E-value=2.2e-06  Score=80.57  Aligned_cols=244  Identities=14%  Similarity=0.098  Sum_probs=123.3

Q ss_pred             CCcEEEEEEECcc---eeeecCccccccccccEEEeCCccccccC-------CCcccCCcccEEEeeeeEeC---hhhHH
Q 046658          108 QSVRELQLYLGQQ---NRVQLLETIYTSTTLEVLKLDSDCVINAP-------CVGTCFPTMKVLHMQLQNLD---NSLTE  174 (413)
Q Consensus       108 ~~v~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-------~~~~~~~~L~~L~L~~~~~~---~~~l~  174 (413)
                      .+++++.+....-   ....++..+...++|++|.+.++.....+       .....+++|++|++.++.+.   ...+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            3477777775432   22345555556677888888776433101       02334668888888877763   23344


Q ss_pred             HHhccCCccceEEEEeeecC-CCCcce--EEEec-CccceeEEEeeecCCCCCCCCc----ceEEEecCceeEEEEeecc
Q 046658          175 KMFSACPCLEELSVHAYFDA-DDSRTN--FIIAS-STLKHFTLTVVIDTDNHFSEID----HTVMLKAPNLQCLHIIADR  246 (413)
Q Consensus       175 ~l~~~cp~Le~L~l~~~~~~-~~~~~~--~~i~~-~~L~~L~i~~~~~~~~~~~~~~----~~~~~~~P~L~~L~~~~~~  246 (413)
                      .+... |.|++|.+.+|... .+....  ..... ++|+.|.+.     +|......    .......++|++|++.++.
T Consensus       103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~-----~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116         103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG-----RNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC-----CCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            44444 66888888877661 111110  00122 677777777     66543110    0011123456666655532


Q ss_pred             cceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccc
Q 046658          247 LGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECW  323 (413)
Q Consensus       247 ~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~  323 (413)
                      .....+   +.+                    ...++.+++|++|.+..+...   ...+...+..+|+|+.|.+.....
T Consensus       177 l~~~~~---~~l--------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         177 IGDAGI---RAL--------------------AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             CchHHH---HHH--------------------HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            210000   000                    001234457888888877543   344666677788888888877332


Q ss_pred             eecccccCCccccCccCcccccceeEEEEEeec-CCHhHHHHHHHHHhcCCCCceEEEEeeccc
Q 046658          324 FEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQ-GDEDEQRVIEYFLQQCKCLEVMIINCKALI  386 (413)
Q Consensus       324 ~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~-~~~~~~~l~~~ll~~a~~Le~l~i~~~~~~  386 (413)
                      +..+....  .  ..... ....|+.+.+.+.. ...+...++++ +.+.+.|+.+.+..+.-.
T Consensus       234 ~~~~~~~l--~--~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         234 TDAGAAAL--A--SALLS-PNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFG  291 (319)
T ss_pred             chHHHHHH--H--HHHhc-cCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCc
Confidence            21110000  0  00000 12567777776544 22233444454 344477888777765544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.82  E-value=6.9e-06  Score=79.46  Aligned_cols=27  Identities=7%  Similarity=0.153  Sum_probs=19.0

Q ss_pred             ceeEEEEE--eecCCHhHHHHHHHHHhcC
Q 046658          346 RVKKIEII--RVQGDEDEQRVIEYFLQQC  372 (413)
Q Consensus       346 ~L~~v~i~--~~~~~~~~~~l~~~ll~~a  372 (413)
                      +||++.|.  +|-++++-..+..++.++.
T Consensus       440 ~Lk~Lv~nSssflCDCql~Wl~qWl~~~~  468 (873)
T KOG4194|consen  440 ELKELVMNSSSFLCDCQLKWLAQWLYRRK  468 (873)
T ss_pred             hhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence            68887775  4557777777777777654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=2.3e-06  Score=76.12  Aligned_cols=153  Identities=17%  Similarity=0.170  Sum_probs=103.3

Q ss_pred             cceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcc-eeeecCccccccccccEEEeCCccccccCC---CcccCCc
Q 046658           82 IDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCVINAPC---VGTCFPT  157 (413)
Q Consensus        82 l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~  157 (413)
                      ++.++++...-.|  ++..  ..|-..+++++.++.+.+ ....+...+.+|+.|..|+|+.|.......   ...--+.
T Consensus       212 Lk~lSlEg~~LdD--~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  212 LKNLSLEGLRLDD--PIVN--TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             hhhccccccccCc--HHHH--HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            7777777543222  1222  223347899999997765 344455556789999999999985433211   2334678


Q ss_pred             ccEEEeeeeEe--ChhhHHHHhccCCccceEEEEeeec-CCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEE-e
Q 046658          158 MKVLHMQLQNL--DNSLTEKMFSACPCLEELSVHAYFD-ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVML-K  233 (413)
Q Consensus       158 L~~L~L~~~~~--~~~~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~-~  233 (413)
                      |+.|+|++++-  ....+..+...||.|.+|+|++|.. .+++-. .....+.|++|.++     .|+.......+.+ +
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSls-----RCY~i~p~~~~~l~s  361 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLS-----RCYDIIPETLLELNS  361 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchheeeehh-----hhcCCChHHeeeecc
Confidence            99999998865  7778999999999999999999987 222222 22355789999999     8886543223332 5


Q ss_pred             cCceeEEEEee
Q 046658          234 APNLQCLHIIA  244 (413)
Q Consensus       234 ~P~L~~L~~~~  244 (413)
                      .|.|.+|++.|
T Consensus       362 ~psl~yLdv~g  372 (419)
T KOG2120|consen  362 KPSLVYLDVFG  372 (419)
T ss_pred             CcceEEEEecc
Confidence            67777777776

>PLN03210 Resistant to P

Probab=97.81  E-value=8.3e-05  Score=81.81  Aligned_cols=105  Identities=11%  Similarity=0.022  Sum_probs=52.7

Q ss_pred             cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcccee
Q 046658          132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHF  211 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L  211 (413)
                      ..+|+.|++.++....++.....+++|+.|+|.++..- ..+.. ++.+++|+.|.+.+|..-..+.. ..-..++|+.|
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L  686 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDL  686 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEE
Confidence            45566666666554444434455667777777654320 00111 45567777777777755111111 11123566777


Q ss_pred             EEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          212 TLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       212 ~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      .+.     +|....... ..+..++|+.|.+.++
T Consensus       687 ~L~-----~c~~L~~Lp-~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        687 DMS-----RCENLEILP-TGINLKSLYRLNLSGC  714 (1153)
T ss_pred             eCC-----CCCCcCccC-CcCCCCCCCEEeCCCC
Confidence            776     665432111 1124556666666664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=97.76  E-value=8.5e-05  Score=81.72  Aligned_cols=81  Identities=16%  Similarity=0.169  Sum_probs=40.5

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccc-cccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCV-INAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.++++.... ...+|. +..+++|++|.|.+|.. ..+|.....+++|+.|++.+|.. +.  +..-+ +++.|+.
T Consensus       634 ~~Lk~L~Ls~~~~-l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~--Lp~~i-~l~sL~~  708 (1153)
T PLN03210        634 TGLRNIDLRGSKN-LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI--LPTGI-NLKSLYR  708 (1153)
T ss_pred             CCCCEEECCCCCC-cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc--cCCcC-CCCCCCE
Confidence            4566666654321 223332 44456777777776643 23343445666677777766532 10  00000 3455556


Q ss_pred             EEEEeeec
Q 046658          186 LSVHAYFD  193 (413)
Q Consensus       186 L~l~~~~~  193 (413)
                      |.+.+|..
T Consensus       709 L~Lsgc~~  716 (1153)
T PLN03210        709 LNLSGCSR  716 (1153)
T ss_pred             EeCCCCCC
Confidence            65555543

syringae 6; Provisional

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=3.1e-06  Score=79.00  Aligned_cols=179  Identities=19%  Similarity=0.158  Sum_probs=106.3

Q ss_pred             cccccEEEeCCccccccCC--CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658          132 STTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL  208 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L  208 (413)
                      .++|+...|.++..-..+.  .+..||+++.|+|+..-+ ....+..++...|.||.|.++.+.......+...-..++|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            4678888888876554442  566799999999998877 6777888888899999999988876111111122356789


Q ss_pred             ceeEEEeeecCCCCCC-CCcceEEEecCceeEEEEeeccc-c--eeeeecCCCceEEEEEeecceeEEEecccCcccCCC
Q 046658          209 KHFTLTVVIDTDNHFS-EIDHTVMLKAPNLQCLHIIADRL-G--SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPS  284 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~-~~~~~~~~~~P~L~~L~~~~~~~-~--~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~  284 (413)
                      |.|.+.     +|..+ .....+....|+|+.|.+.++.. .  ..+......|++++++-..   -+.+.  .-.....
T Consensus       200 K~L~l~-----~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~---li~~~--~~~~~~~  269 (505)
T KOG3207|consen  200 KQLVLN-----SCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN---LIDFD--QGYKVGT  269 (505)
T ss_pred             heEEec-----cCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc---ccccc--ccccccc
Confidence            999999     88765 22334566788888888887421 1  2222233345555542100   00000  0011224


Q ss_pred             CCCeeEEEEEeCCCC-----hhhHHHHHhcCCCCceEEecc
Q 046658          285 FSELTFLEVKLAGSG-----WRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       285 ~~~L~~L~l~~~~~~-----~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      |++|..|.+..++..     ..........+|.|+.|.+..
T Consensus       270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             ccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence            556666666655432     112333455666666666554

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.39  E-value=0.0002  Score=39.57  Aligned_cols=25  Identities=32%  Similarity=0.707  Sum_probs=22.9

Q ss_pred             cccEEEeeeeEe-ChhhHHHHhccCC
Q 046658          157 TMKVLHMQLQNL-DNSLTEKMFSACP  181 (413)
Q Consensus       157 ~L~~L~L~~~~~-~~~~l~~l~~~cp  181 (413)
                      +||+|+|..+.+ ++..+++++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 6668999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.26  E-value=4.6e-05  Score=71.03  Aligned_cols=160  Identities=14%  Similarity=0.078  Sum_probs=87.8

Q ss_pred             cccccEEEeCCccccccCC---CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec--CCCCcceEEEec
Q 046658          132 STTLEVLKLDSDCVINAPC---VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD--ADDSRTNFIIAS  205 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~--~~~~~~~~~i~~  205 (413)
                      |..+..+++..|....-..   ....+..|+.|..+++.. ++..+..+..+|++|..|.+..|..  ...+.. +.-.+
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-l~rn~  345 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-LGRNC  345 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-hhcCC
Confidence            4556666665663322111   234566777777777766 7777777777777777777777765  112222 33455


Q ss_pred             CccceeEEEeeecCCCCCCCC--cceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCC
Q 046658          206 STLKHFTLTVVIDTDNHFSEI--DHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCP  283 (413)
Q Consensus       206 ~~L~~L~i~~~~~~~~~~~~~--~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p  283 (413)
                      +.|+.|.+.     +|.....  ......++|.|+.|.++-+..          ..+.+|..        +..    ..-
T Consensus       346 ~~Le~l~~e-----~~~~~~d~tL~sls~~C~~lr~lslshce~----------itD~gi~~--------l~~----~~c  398 (483)
T KOG4341|consen  346 PHLERLDLE-----ECGLITDGTLASLSRNCPRLRVLSLSHCEL----------ITDEGIRH--------LSS----SSC  398 (483)
T ss_pred             hhhhhhccc-----ccceehhhhHhhhccCCchhccCChhhhhh----------hhhhhhhh--------hhh----ccc
Confidence            777777777     6654321  233455677777776553211          11101100        000    001


Q ss_pred             CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEec
Q 046658          284 SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVD  319 (413)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~  319 (413)
                      ....|..|++.+++...+...+.+..||+||.+++.
T Consensus       399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             cccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence            233466666666666666666667777777775543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.20  E-value=1.2e-05  Score=80.13  Aligned_cols=189  Identities=19%  Similarity=0.164  Sum_probs=116.4

Q ss_pred             hCCcEEEEEEECcc-eeeecCccccccccccEEEeCCc-ccccc-----CCCcccCCcccEEEeeeeE-eChhhHHHHhc
Q 046658          107 MQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSD-CVINA-----PCVGTCFPTMKVLHMQLQN-LDNSLTEKMFS  178 (413)
Q Consensus       107 ~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~-~~~~~-----~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~  178 (413)
                      ..+++++.+..... ....+-.....|+.|+.|.+.++ .....     ......+++|+.|++..+. +++..+..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            46777777775432 11124444567899999999873 22111     1144567899999999988 58899999999


Q ss_pred             cCCccceEEEEeeec--CCCCcceEEEecCccceeEEEeeecCCCCCCCC--cceEEEecCceeEEEEeecccceeeeec
Q 046658          179 ACPCLEELSVHAYFD--ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEI--DHTVMLKAPNLQCLHIIADRLGSYVLEE  254 (413)
Q Consensus       179 ~cp~Le~L~l~~~~~--~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~--~~~~~~~~P~L~~L~~~~~~~~~~~~~~  254 (413)
                      .||.||.|.+..|..  ..++.. +...+|.|++|.+.     .|....+  ...+...+|+|+.|.+.....       
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~-----~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------  333 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLS-----GCHGLTDSGLEALLKNCPNLRELKLLSLNG-------  333 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHH-HHHhcCcccEEeee-----cCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence            999999999888884  334444 44567889999999     8876421  122334577777766555211       


Q ss_pred             CCCceEEEEEeecceeEEEec--ccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCC
Q 046658          255 MHCLHEAVVHISYAEWSQAVD--QCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNL  313 (413)
Q Consensus       255 ~~~L~~~~i~~~~~~l~l~~~--~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L  313 (413)
                      ++.++...+...     ....  .........+++++++.+..+.....+...++..||+|
T Consensus       334 c~~l~~~~l~~~-----~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  334 CPSLTDLSLSGL-----LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             CccHHHHHHHHh-----hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            223333222100     0000  00011123567888888888773355567788899988

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.15  E-value=7.5e-05  Score=63.05  Aligned_cols=124  Identities=23%  Similarity=0.245  Sum_probs=43.2

Q ss_pred             CcEEEEEEECcceeeecCcccc-ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          109 SVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      +.++|++....-...  . .+. .+.+|+.|+|++|.+..++ +...+++|++|++++..++.-. +.+...||+|++|.
T Consensus        20 ~~~~L~L~~n~I~~I--e-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--E-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C-HHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--c-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEE
Confidence            456666665543221  1 222 3578999999999887777 6777899999999988883311 23335689999999


Q ss_pred             EEeeecCCCCcceEE--EecCccceeEEEeeecCCCCCCCCc---ceEEEecCceeEEEEee
Q 046658          188 VHAYFDADDSRTNFI--IASSTLKHFTLTVVIDTDNHFSEID---HTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       188 l~~~~~~~~~~~~~~--i~~~~L~~L~i~~~~~~~~~~~~~~---~~~~~~~P~L~~L~~~~  244 (413)
                      +.++.. .++.. +.  ...|+|+.|++.     ++......   ..+....|+|+.|+...
T Consensus        95 L~~N~I-~~l~~-l~~L~~l~~L~~L~L~-----~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   95 LSNNKI-SDLNE-LEPLSSLPKLRVLSLE-----GNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TTS----SCCC-CGGGGG-TT--EEE-T-----T-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCcC-CChHH-hHHHHcCCCcceeecc-----CCcccchhhHHHHHHHHcChhheeCCEE
Confidence            988877 33332 11  135778888887     66544211   11222456666665554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.15  E-value=6.7e-05  Score=77.01  Aligned_cols=157  Identities=20%  Similarity=0.325  Sum_probs=102.2

Q ss_pred             ccccEEEeCCccccc--cCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEe-cCcc
Q 046658          133 TTLEVLKLDSDCVIN--APC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIA-SSTL  208 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~--~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~-~~~L  208 (413)
                      ..|++|+++|.....  .|. ...-||+|++|.+.+..+..+++..+..++|+|..|+++++.. .++..   ++ -++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl~G---IS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNLSG---ISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCcHH---HhccccH
Confidence            678889988853321  111 3456999999999999997677999999999999999999987 33322   22 2677


Q ss_pred             ceeEEEeeecCCCCCCC-CcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCC
Q 046658          209 KHFTLTVVIDTDNHFSE-IDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSE  287 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~-~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~  287 (413)
                      +.|.+.     +-.... ..-.-.+...+|+.|+++........     ...+.++.            +    -..+++
T Consensus       198 q~L~mr-----nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----~ii~qYle------------c----~~~Lpe  251 (699)
T KOG3665|consen  198 QVLSMR-----NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----KIIEQYLE------------C----GMVLPE  251 (699)
T ss_pred             HHHhcc-----CCCCCchhhHHHHhcccCCCeeeccccccccch-----HHHHHHHH------------h----cccCcc
Confidence            777776     543322 11223445677888888873221110     11111110            0    113668


Q ss_pred             eeEEEEEeCCCChhhHHHHHhcCCCCceEEec
Q 046658          288 LTFLEVKLAGSGWRVLPIILHSSPNLERLLVD  319 (413)
Q Consensus       288 L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~  319 (413)
                      |+.|+.+....+...+..++..-|+|+.+..-
T Consensus       252 LrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  252 LRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             ccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            99998886655677788888889998888643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.12  E-value=3.6e-05  Score=78.37  Aligned_cols=139  Identities=19%  Similarity=0.220  Sum_probs=84.7

Q ss_pred             cHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeC--hhhHH
Q 046658           97 SVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLD--NSLTE  174 (413)
Q Consensus        97 ~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~l~  174 (413)
                      .+..|+..  +.+++.+......  ...+|..++...+|++|+...|.....|+...++.+|++|+|....+.  .+.+ 
T Consensus       255 ~lp~wi~~--~~nle~l~~n~N~--l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~-  329 (1081)
T KOG0618|consen  255 NLPEWIGA--CANLEALNANHNR--LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF-  329 (1081)
T ss_pred             cchHHHHh--cccceEecccchh--HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH-
Confidence            34577776  4566666665443  356677777778888888887776666656778999999999988761  2222 


Q ss_pred             HHhccCCc-cceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc
Q 046658          175 KMFSACPC-LEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG  248 (413)
Q Consensus       175 ~l~~~cp~-Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~  248 (413)
                        +..-+. |+.|....... ......-.-..+.|+.|.+.     +....+........+++|+.|+++++...
T Consensus       330 --l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~Lyla-----nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  330 --LAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLA-----NNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             --HhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHh-----cCcccccchhhhccccceeeeeecccccc
Confidence              121222 44444443333 11222011234678888887     76655443445567889999999885443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.03  E-value=5.4e-06  Score=80.79  Aligned_cols=82  Identities=18%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658          109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV  188 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  188 (413)
                      .++.|.+.-.  ....+|..+..|..|++|++..+....+-+..+.+|+|+.+.++...+....+..=+-....|..|+|
T Consensus        33 ~~~WLkLnrt--~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL  110 (1255)
T KOG0444|consen   33 QMTWLKLNRT--KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL  110 (1255)
T ss_pred             heeEEEechh--hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence            4455554432  24556777777777777777776665554456666777766666655532222222222334444444


Q ss_pred             Eeee
Q 046658          189 HAYF  192 (413)
Q Consensus       189 ~~~~  192 (413)
                      +.+.
T Consensus       111 ShNq  114 (1255)
T KOG0444|consen  111 SHNQ  114 (1255)
T ss_pred             chhh
Confidence            4443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.02  E-value=0.00044  Score=67.35  Aligned_cols=107  Identities=16%  Similarity=0.256  Sum_probs=60.2

Q ss_pred             ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEE-ecCccce
Q 046658          133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFII-ASSTLKH  210 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i-~~~~L~~  210 (413)
                      ..+++|.|.++.+.++.. .+.++.+|.+|.|.+.+++.- -...+++.|.||.|+|..+.. .-++. +.. .-++|+.
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~i-rive~-ltFqgL~Sl~n  249 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRI-RIVEG-LTFQGLPSLQN  249 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccce-eeehh-hhhcCchhhhh
Confidence            667777777776665542 455666777777777766221 134456677788777777655 21222 222 2366666


Q ss_pred             eEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccc
Q 046658          211 FTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRL  247 (413)
Q Consensus       211 L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~  247 (413)
                      |.+.     ......-..+....+.+++.|++..+..
T Consensus       250 lklq-----rN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  250 LKLQ-----RNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             hhhh-----hcCcccccCcceeeecccceeecccchh
Confidence            6666     4433211123444456666666666433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.89  E-value=5.1e-05  Score=75.54  Aligned_cols=168  Identities=18%  Similarity=0.118  Sum_probs=110.2

Q ss_pred             ccccccEEEeCCcccccc---CCCcccCCcccEEEeeee-Ee---ChhhHHHHhccCCccceEEEEeeec-C-CCCcceE
Q 046658          131 TSTTLEVLKLDSDCVINA---PCVGTCFPTMKVLHMQLQ-NL---DNSLTEKMFSACPCLEELSVHAYFD-A-DDSRTNF  201 (413)
Q Consensus       131 ~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~-~~---~~~~l~~l~~~cp~Le~L~l~~~~~-~-~~~~~~~  201 (413)
                      .++.|+.|++.+|.....   .+....+++|+.|++.++ ..   .......+...|+.|+.|.+..|.. . ..+.. +
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~-l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA-L  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH-H
Confidence            379999999998854432   125667999999999872 22   3333455778899999999999984 2 22333 3


Q ss_pred             EEecCccceeEEEeeecCCCCCC--CCcceEEEecCceeEEEEeecccc------eeeeecCCCceEEEEEeecceeEEE
Q 046658          202 IIASSTLKHFTLTVVIDTDNHFS--EIDHTVMLKAPNLQCLHIIADRLG------SYVLEEMHCLHEAVVHISYAEWSQA  273 (413)
Q Consensus       202 ~i~~~~L~~L~i~~~~~~~~~~~--~~~~~~~~~~P~L~~L~~~~~~~~------~~~~~~~~~L~~~~i~~~~~~l~l~  273 (413)
                      .-.+|+|+.|.+.     +|...  .+...+.-.+|+|++|+++++..-      .. ..++++++.+.+..        
T Consensus       265 ~~~c~~L~~L~l~-----~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~--------  330 (482)
T KOG1947|consen  265 ASRCPNLETLSLS-----NCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLS--------  330 (482)
T ss_pred             HhhCCCcceEccC-----CCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhh--------
Confidence            3458999999988     88843  333345557899999999985431      11 33455555533211        


Q ss_pred             ecccCcccCCCCCCeeEEEEEeCCCC--hhhHHHHHhcCCCCceEEeccc
Q 046658          274 VDQCYDNFCPSFSELTFLEVKLAGSG--WRVLPIILHSSPNLERLLVDKE  321 (413)
Q Consensus       274 ~~~~~~~~~p~~~~L~~L~l~~~~~~--~~~l~~ll~~~p~L~~L~i~~~  321 (413)
                              ++.+.+++.+.+..+...  .......++.||+|+.+.+...
T Consensus       331 --------~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~  372 (482)
T KOG1947|consen  331 --------LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC  372 (482)
T ss_pred             --------cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh
Confidence                    222445666655554332  2456667889999999998874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.86  E-value=0.00063  Score=46.67  Aligned_cols=59  Identities=24%  Similarity=0.326  Sum_probs=38.8

Q ss_pred             ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeee
Q 046658          133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYF  192 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~  192 (413)
                      ++|++|.+.+|.+...|. .+.++++|++|++.+..++.- -...+.++|.|+.|.+.+|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            467778887776666654 455678888888877766211 12346677888888777663

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.86  E-value=0.00027  Score=64.58  Aligned_cols=44  Identities=18%  Similarity=0.077  Sum_probs=32.0

Q ss_pred             cCCCCCCeeEEEEEeCCCC----hhhHHHHHhcCCCCceEEeccccce
Q 046658          281 FCPSFSELTFLEVKLAGSG----WRVLPIILHSSPNLERLLVDKECWF  324 (413)
Q Consensus       281 ~~p~~~~L~~L~l~~~~~~----~~~l~~ll~~~p~L~~L~i~~~~~~  324 (413)
                      .+|.+++|+.|.+.+|...    ...+..+-+..|+|+.|.+.+...+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            3667788999999998754    2334455667899999998885443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.83  E-value=6.2e-05  Score=63.57  Aligned_cols=122  Identities=15%  Similarity=0.241  Sum_probs=39.0

Q ss_pred             cccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658          130 YTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL  208 (413)
Q Consensus       130 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L  208 (413)
                      -++..++.|+|.|+.+.........+.+|+.|+|+++.+ +-+.    +..++.|++|.+.++.. ..+...+....|+|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRI-SSISEGLDKNLPNL   90 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCC-CccccchHHhCCcC
Confidence            345678999999998777662233688999999999988 3333    45579999999999987 33321011236899


Q ss_pred             ceeEEEeeecCCCCCCCC-cceEEEecCceeEEEEeecccc------eeeeecCCCceEE
Q 046658          209 KHFTLTVVIDTDNHFSEI-DHTVMLKAPNLQCLHIIADRLG------SYVLEEMHCLHEA  261 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~-~~~~~~~~P~L~~L~~~~~~~~------~~~~~~~~~L~~~  261 (413)
                      ++|.+.     +.....- .-......|+|++|.+.+++..      .+.+..+|+|+.+
T Consensus        91 ~~L~L~-----~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L  145 (175)
T PF14580_consen   91 QELYLS-----NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL  145 (175)
T ss_dssp             -EEE-T-----TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred             CEEECc-----CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence            999998     6654320 0011125788888888885442      3345556666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.79  E-value=0.0026  Score=66.15  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+..++.+....  ...+|..+.  ++|+.|.|.+|.+..+|.  .-+++|++|+|.++.++.  +..-  -.+.|+.|.
T Consensus       178 ~~~~~L~L~~~~--LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~--~l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILG--LTTIPACIP--EQITTLILDNNELKSLPE--NLQGNIKTLYANSNQLTS--IPAT--LPDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCC--cCcCCcccc--cCCcEEEecCCCCCcCCh--hhccCCCEEECCCCcccc--CChh--hhccccEEE
Confidence            345555554332  334555432  467788887776665552  223577777777665521  1111  123567777


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEE
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      +.+|.. ..+..   .-..+|+.|.+.
T Consensus       248 Ls~N~L-~~LP~---~l~s~L~~L~Ls  270 (754)
T PRK15370        248 LSINRI-TELPE---RLPSALQSLDLF  270 (754)
T ss_pred             CcCCcc-CcCCh---hHhCCCCEEECc
Confidence            776655 22221   012356666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.00033  Score=62.68  Aligned_cols=111  Identities=18%  Similarity=0.257  Sum_probs=76.0

Q ss_pred             ccccccccEEEeCCccccccCC---CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEEe
Q 046658          129 IYTSTTLEVLKLDSDCVINAPC---VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIA  204 (413)
Q Consensus       129 ~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~  204 (413)
                      +++...+.-|.+.+|.+.....   ....+..++.|+|.+..+ +...+..++...|.|+.|.+.++.....+.. +...
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p  119 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLP  119 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-Cccc
Confidence            3444456677777776544321   345678899999999999 7788999999999999999999887444544 4445


Q ss_pred             cCccceeEEEeeecCCCCCC-CCcceEEEecCceeEEEEeec
Q 046658          205 SSTLKHFTLTVVIDTDNHFS-EIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       205 ~~~L~~L~i~~~~~~~~~~~-~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      ..+|+.|.+.     +.... .......-..|.+..|+++++
T Consensus       120 ~~nl~~lVLN-----gT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  120 LKNLRVLVLN-----GTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccceEEEEEc-----CCCCChhhhhhhhhcchhhhhhhhccc
Confidence            5678888888     54432 111233345677777777763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.0017  Score=58.31  Aligned_cols=223  Identities=15%  Similarity=0.193  Sum_probs=128.1

Q ss_pred             CCcEEEEEEECcc-eeeecCccccccccccEEEeCCcccccc-CCCcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCVINA-PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      ..++++++....- ++-.+-..+-..|.|+.|+|+.+..... ........+|++|.|.+...+.......++..|.+.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            5788888885321 2333444445668999999987744221 1012356689999999998888888999999999999


Q ss_pred             EEEEeeec---CCCCcceEEEecCccceeEEEeeecCCCCCCC--CcceEEEecCceeEEEEeecccceeeeecCCCceE
Q 046658          186 LSVHAYFD---ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSE--IDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHE  260 (413)
Q Consensus       186 L~l~~~~~---~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~--~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~  260 (413)
                      |+++.+..   ..+-.+ ..-.+|.++.|.+.     .|....  ....+.--.||+..+.+.+++...        +. 
T Consensus       151 lHmS~N~~rq~n~Dd~c-~e~~s~~v~tlh~~-----~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~--------~s-  215 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNC-IEDWSTEVLTLHQL-----PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT--------ES-  215 (418)
T ss_pred             hhhccchhhhhcccccc-ccccchhhhhhhcC-----CcHHHHHHHHHhHHhhcccchheeeecCcccc--------hh-
Confidence            99988733   111112 33345677777777     775421  111222235666666555521100        00 


Q ss_pred             EEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEeccccceecccccCCccccCcc
Q 046658          261 AVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCV  339 (413)
Q Consensus       261 ~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~  339 (413)
                                     .  +.....++.+--|.|+....+ |.++-. +..+|.|..|.+..-+..+.- .+   ......
T Consensus       216 ---------------~--ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l-~~---~err~l  273 (418)
T KOG2982|consen  216 ---------------S--EKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPL-RG---GERRFL  273 (418)
T ss_pred             ---------------h--cccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccc-cC---CcceEE
Confidence                           0  111112333345666665554 777664 789999999988763221100 00   111111


Q ss_pred             CcccccceeEEEEEeec------CCHhHHHHHHHHHh
Q 046658          340 PQCLLQRVKKIEIIRVQ------GDEDEQRVIEYFLQ  370 (413)
Q Consensus       340 ~~c~~~~L~~v~i~~~~------~~~~~~~l~~~ll~  370 (413)
                         +...|..|++.|-.      ....|..|++|.+.
T Consensus       274 ---lIaRL~~v~vLNGskIss~er~dSEr~fVRyym~  307 (418)
T KOG2982|consen  274 ---LIARLTKVQVLNGSKISSRERKDSERRFVRYYMS  307 (418)
T ss_pred             ---EEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence               12456666666543      23468889999886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.17  E-value=0.005  Score=64.13  Aligned_cols=76  Identities=14%  Similarity=0.084  Sum_probs=40.2

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.|.+..+.  ...+|..+.  ++|+.|+|.+|....+|...  ..+|+.|+|++..++.  +..  .-++.|+.|.
T Consensus       220 ~nL~~L~Ls~N~--LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~--LP~--~l~~sL~~L~  289 (754)
T PRK15370        220 GNIKTLYANSNQ--LTSIPATLP--DTIQEMELSINRITELPERL--PSALQSLDLFHNKISC--LPE--NLPEELRYLS  289 (754)
T ss_pred             cCCCEEECCCCc--cccCChhhh--ccccEEECcCCccCcCChhH--hCCCCEEECcCCccCc--ccc--ccCCCCcEEE
Confidence            467777766433  224554332  36777777777655554211  2457777776555421  111  1124666666


Q ss_pred             EEeeec
Q 046658          188 VHAYFD  193 (413)
Q Consensus       188 l~~~~~  193 (413)
                      +.+|..
T Consensus       290 Ls~N~L  295 (754)
T PRK15370        290 VYDNSI  295 (754)
T ss_pred             CCCCcc
Confidence            666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.14  E-value=0.019  Score=59.78  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=64.1

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+-..|++....  ...+|..+.  ++|+.|.+.++.+..+|.   ..++|++|+|.++.++.  +..   ..+.|++|.
T Consensus       201 ~~~~~LdLs~~~--LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCC--CCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccceee
Confidence            445566665443  335777554  478888888877666652   35788888888776631  111   235777777


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      +.++.. ..+..    ..++|+.|.+.     ++...    .+....|+|+.|+++++
T Consensus       269 Ls~N~L-~~Lp~----lp~~L~~L~Ls-----~N~Lt----~LP~~p~~L~~LdLS~N  312 (788)
T PRK15387        269 IFSNPL-THLPA----LPSGLCKLWIF-----GNQLT----SLPVLPPGLQELSVSDN  312 (788)
T ss_pred             ccCCch-hhhhh----chhhcCEEECc-----CCccc----cccccccccceeECCCC
Confidence            777654 22221    12456666666     55432    11112356777766664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.12  E-value=0.00029  Score=58.00  Aligned_cols=70  Identities=21%  Similarity=0.335  Sum_probs=50.3

Q ss_pred             eeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ...+|+.+....+|+.|++.++.+..+|...+++|.|+.|++...+.  ..+..-+.++|.||.|++..+..
T Consensus        45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhcccccc
Confidence            45667777888888888888888878876777888888888764433  22233345678888888877765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.78  E-value=0.029  Score=58.56  Aligned_cols=53  Identities=15%  Similarity=0.169  Sum_probs=34.2

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL  168 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~  168 (413)
                      .+++.|.+....  ...+|..   .++|++|+|.+|.+..+|.   ..++|++|+|.+..+
T Consensus       222 ~~L~~L~L~~N~--Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        222 AHITTLVIPDNN--LTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL  274 (788)
T ss_pred             cCCCEEEccCCc--CCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCch
Confidence            367777776543  2345542   4788999998887666652   246778887776654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.72  E-value=0.0094  Score=40.73  Aligned_cols=57  Identities=18%  Similarity=0.269  Sum_probs=42.5

Q ss_pred             CcEEEEEEECcceeeecCccc-cccccccEEEeCCccccccCC-CcccCCcccEEEeeeeE
Q 046658          109 SVRELQLYLGQQNRVQLLETI-YTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQN  167 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~  167 (413)
                      +++.|++....  ...+|... ..+++|++|+++++....+++ .+.++++|++|++.++.
T Consensus         2 ~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSST--ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45666666543  45677644 457999999999998777664 56889999999998764

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.18  E-value=0.011  Score=37.47  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             cccEEEeCCccccccCCCcccCCcccEEEeeeeEe
Q 046658          134 TLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL  168 (413)
Q Consensus       134 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~  168 (413)
                      +|++|.+.++.+.++|+....+++|++|++++..+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            56677777766666653356666677776666655

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.18  E-value=0.00081  Score=66.16  Aligned_cols=170  Identities=16%  Similarity=0.087  Sum_probs=93.6

Q ss_pred             EEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEe
Q 046658          111 RELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHA  190 (413)
Q Consensus       111 ~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~  190 (413)
                      +-++++..+-....+|..+-....++.|+|.....-.+|...+.+.+|++|++.+..+  ..+..=++..|.|+.+.++.
T Consensus        10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L--~~vhGELs~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL--ISVHGELSDLPRLRSVIVRD   87 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh--HhhhhhhccchhhHHHhhhc
Confidence            3344444433335678887788899999998766556665678899999999987654  22333357789999999888


Q ss_pred             eec-CCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecce
Q 046658          191 YFD-ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAE  269 (413)
Q Consensus       191 ~~~-~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~  269 (413)
                      +.. ..+++. -...-..|..|+++     .... .+...-.-.|.|+-.|.++.+....+.-.-+-+|.++        
T Consensus        88 N~LKnsGiP~-diF~l~dLt~lDLS-----hNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL--------  152 (1255)
T KOG0444|consen   88 NNLKNSGIPT-DIFRLKDLTILDLS-----HNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL--------  152 (1255)
T ss_pred             cccccCCCCc-hhcccccceeeecc-----hhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH--------
Confidence            766 222332 11222334444444     3221 1111222356677777777643222111112223222        


Q ss_pred             eEEEecccCcccCC----CCCCeeEEEEEeCC
Q 046658          270 WSQAVDQCYDNFCP----SFSELTFLEVKLAG  297 (413)
Q Consensus       270 l~l~~~~~~~~~~p----~~~~L~~L~l~~~~  297 (413)
                      +.++++.....++|    .+.+|+.|.|+.++
T Consensus       153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             hhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence            23334433333344    45566666666654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.66  E-value=0.011  Score=53.91  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=34.6

Q ss_pred             CccCCCCC----hHHHHHHhcCCCcccchhhcccchhhHHH
Q 046658            2 GYRISDLP----DAILGRIVSFLPTKNTVATSVLSRRWKHV   38 (413)
Q Consensus         2 ~D~is~LP----d~lL~~Ils~L~~~d~~r~s~lSrrWr~l   38 (413)
                      .|.|+.||    |++..+|||+|+..+..++-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            47899999    99999999999999999999999999863

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.24  E-value=0.0048  Score=63.50  Aligned_cols=65  Identities=17%  Similarity=0.108  Sum_probs=33.7

Q ss_pred             hccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcc-eEEEecCceeEEEEeeccccee
Q 046658          177 FSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIADRLGSY  250 (413)
Q Consensus       177 ~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~~~~~~  250 (413)
                      +..|+.|+.|...++.. ..++.  ....|.|+.++++      |...+... .....-|+|++|+++|+....+
T Consensus       426 va~~~~L~tL~ahsN~l-~~fPe--~~~l~qL~~lDlS------~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~  491 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQL-LSFPE--LAQLPQLKVLDLS------CNNLSEVTLPEALPSPNLKYLDLSGNTRLVF  491 (1081)
T ss_pred             HHhhhhhHHHhhcCCce-eechh--hhhcCcceEEecc------cchhhhhhhhhhCCCcccceeeccCCccccc
Confidence            44566666665555444 22221  1235677777775      33332111 1112237999999999654433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.23  E-value=0.02  Score=59.11  Aligned_cols=132  Identities=15%  Similarity=0.136  Sum_probs=69.2

Q ss_pred             HhCCcEEEEEEECcceeeecCcccc-ccccccEEEeCCcccccc--CCCcccCCcccEEEeeeeEeChhhHHHHhccCCc
Q 046658          106 LMQSVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINA--PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPC  182 (413)
Q Consensus       106 ~~~~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~  182 (413)
                      .+.++++|+++.........|..++ .+|+|++|.+.|-.+...  .....+||+|..|++++..++.-   .-++..++
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lkn  196 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKN  196 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhcccc
Confidence            3456677776654333333333332 247777777766433211  11345677777777777766322   33456677


Q ss_pred             cceEEEEeeec--CCCCcceEEEecCccceeEEEeeecCCCCCCCCc------ceEEEecCceeEEEEeeccc
Q 046658          183 LEELSVHAYFD--ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEID------HTVMLKAPNLQCLHIIADRL  247 (413)
Q Consensus       183 Le~L~l~~~~~--~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~------~~~~~~~P~L~~L~~~~~~~  247 (413)
                      |+.|.+.+...  .+++.. + ..-.+|+.|+|+     ........      -......|+|+.|+.+|+..
T Consensus       197 Lq~L~mrnLe~e~~~~l~~-L-F~L~~L~vLDIS-----~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLID-L-FNLKKLRVLDIS-----RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHHHhccCCCCCchhhHHH-H-hcccCCCeeecc-----ccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            77777777655  122222 1 123567777776     33222110      01112378899998888544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.20  E-value=0.029  Score=50.68  Aligned_cols=70  Identities=16%  Similarity=0.083  Sum_probs=35.7

Q ss_pred             eeecCccccccccccEEEeCCccc--------cc-cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeee
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCV--------IN-APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYF  192 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~--------~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~  192 (413)
                      .+.+...+--|..|+.|.+++..-        .. +|.....|++|+++.++.|  +.+.+..+...=|.|..+.+.+..
T Consensus       171 k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~--~~~~i~~~~~~kptl~t~~v~~s~  248 (490)
T KOG1259|consen  171 KYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL--STENIVDIELLKPTLQTICVHNTT  248 (490)
T ss_pred             ccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc--chhheeceeecCchhheeeeeccc
Confidence            444444444456777777765311        11 1223445666666666555  233444444455666666655544


Q ss_pred             c
Q 046658          193 D  193 (413)
Q Consensus       193 ~  193 (413)
                      .
T Consensus       249 ~  249 (490)
T KOG1259|consen  249 I  249 (490)
T ss_pred             c
Confidence            3

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.46  E-value=0.17  Score=43.32  Aligned_cols=61  Identities=20%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             cccccEEEeCCccccccCCC-cccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec
Q 046658          132 STTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      .+.|.+|-|.++++....+. ..-+|+|+.|.|.+..+ .-.+++. +..||.|++|.+.++..
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV  125 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence            45666666666655544332 33456666666666655 3333333 24566666666665554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.26  E-value=0.058  Score=34.06  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=28.5

Q ss_pred             CcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          156 PTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       156 ~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ++|++|+|.+..+++  +...++.||.|+.|.+.++..
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence            579999999998853  555578999999999999976

...

>PLN03150 hypothetical protein; Provisional

Probab=92.73  E-value=0.15  Score=52.52  Aligned_cols=78  Identities=12%  Similarity=0.119  Sum_probs=48.3

Q ss_pred             ccEEEeCCccccc-cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEE
Q 046658          135 LEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTL  213 (413)
Q Consensus       135 L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i  213 (413)
                      ++.|+|.++.... .|.....+++|+.|+|.+..+... +...+..++.|+.|+|.+|.....+.. ..-..++|+.|.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEEC
Confidence            6777777765542 233456778888888887766322 333456778888888888766222222 1123467888888


Q ss_pred             E
Q 046658          214 T  214 (413)
Q Consensus       214 ~  214 (413)
                      .
T Consensus       498 s  498 (623)
T PLN03150        498 N  498 (623)
T ss_pred             c
Confidence            7

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.60  E-value=0.059  Score=50.99  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=33.2

Q ss_pred             CCCCChHHHHHHhcCCC-cccchhhcccchhhHHHHhc
Q 046658            5 ISDLPDAILGRIVSFLP-TKNTVATSVLSRRWKHVWTS   41 (413)
Q Consensus         5 is~LPd~lL~~Ils~L~-~~d~~r~s~lSrrWr~l~~~   41 (413)
                      .++||+|+|..|..+|+ .-|.+|.+.|||.||..-..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            47899999999999997 78999999999999986554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=92.58  E-value=0.009  Score=49.43  Aligned_cols=83  Identities=20%  Similarity=0.187  Sum_probs=59.9

Q ss_pred             CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658          109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV  188 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  188 (413)
                      +++.+.+.+..  ...+|..+.+.+.|+.|++.-++....|.++++||.|+.|+|......+..+..-+-....|+-|.+
T Consensus        57 nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   57 NLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            44445444443  5789999999999999999988877788789999999999999887755444332333344666667


Q ss_pred             Eeeec
Q 046658          189 HAYFD  193 (413)
Q Consensus       189 ~~~~~  193 (413)
                      .++..
T Consensus       135 ~dndf  139 (264)
T KOG0617|consen  135 GDNDF  139 (264)
T ss_pred             cCCCc
Confidence            66655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.37  E-value=0.37  Score=41.24  Aligned_cols=101  Identities=16%  Similarity=0.196  Sum_probs=62.0

Q ss_pred             ccccEEEeCCccccccCCCcccCCcccEEEeeeeEeC--hhhHHHHhccCCccceEEEEeeec--CCCCcceEEEecCcc
Q 046658          133 TTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLD--NSLTEKMFSACPCLEELSVHAYFD--ADDSRTNFIIASSTL  208 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~~~~--~~~~~~~~~i~~~~L  208 (413)
                      .....++|+.+.....+ .+..++.|.+|.|....++  +..+..   ..|+|..|.+.++..  -.++..  .+.+|+|
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDP--LASCPKL  115 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcch--hccCCcc
Confidence            45667778777665555 5667888999999988872  333333   358899999988766  122221  2467888


Q ss_pred             ceeEEEeeecCCCCCCCC--c-ceEEEecCceeEEEEee
Q 046658          209 KHFTLTVVIDTDNHFSEI--D-HTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~--~-~~~~~~~P~L~~L~~~~  244 (413)
                      +.|++-     +......  - ..+.-..|+|+.|++..
T Consensus       116 ~~Ltll-----~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  116 EYLTLL-----GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ceeeec-----CCchhcccCceeEEEEecCcceEeehhh
Confidence            888887     6544311  0 11222445555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.25  E-value=0.04  Score=48.75  Aligned_cols=81  Identities=22%  Similarity=0.245  Sum_probs=46.3

Q ss_pred             CccceeEEEeeecCCC--CCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCC
Q 046658          206 STLKHFTLTVVIDTDN--HFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCP  283 (413)
Q Consensus       206 ~~L~~L~i~~~~~~~~--~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p  283 (413)
                      |+||.|.++     ..  ....+...+...+|+|+++.++++....  +++.                        ..++
T Consensus        65 p~LkkL~ls-----dn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl------------------------~pl~  113 (260)
T KOG2739|consen   65 PKLKKLELS-----DNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL------------------------RPLK  113 (260)
T ss_pred             chhhhhccc-----CCcccccccceehhhhCCceeEEeecCCcccc--cccc------------------------chhh
Confidence            566666666     44  3333444555667888888888732211  1111                        1134


Q ss_pred             CCCCeeEEEEEeCCCC--hhhHHHHHhcCCCCceEE
Q 046658          284 SFSELTFLEVKLAGSG--WRVLPIILHSSPNLERLL  317 (413)
Q Consensus       284 ~~~~L~~L~l~~~~~~--~~~l~~ll~~~p~L~~L~  317 (413)
                      .+.||+.|.+.+|...  ..-=..++...|.|..|.
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            6678888888887643  222334555667777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.96  E-value=0.1  Score=46.64  Aligned_cols=43  Identities=9%  Similarity=-0.016  Sum_probs=32.6

Q ss_pred             CcccCCcccEEEeeeeEe---ChhhHHHHhccCCccceEEEEeeec
Q 046658          151 VGTCFPTMKVLHMQLQNL---DNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       151 ~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ....||+|++.+|+...+   ....+..++++...|++|.+.+|..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            344577777777777666   3456788888888999999999977

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.78  E-value=0.03  Score=49.94  Aligned_cols=209  Identities=14%  Similarity=0.102  Sum_probs=116.9

Q ss_pred             cceEEeeecCCCCcccHHHHHHHHHh--CCcEEEEEE--ECcceee-------ecCccccccccccEEEeCCccccc-cC
Q 046658           82 IDSFCLHCSRPIDLSSVNFWLSSALM--QSVRELQLY--LGQQNRV-------QLLETIYTSTTLEVLKLDSDCVIN-AP  149 (413)
Q Consensus        82 l~~l~l~~~~~~~~~~~~~wl~~a~~--~~v~~L~l~--~~~~~~~-------~lp~~~~~~~~L~~L~L~~~~~~~-~~  149 (413)
                      +..+.++.  ..-+.....|+....+  ++++...++  +.....-       .+.+.+..||.|+..+|+.+.+-. .|
T Consensus        32 ~~evdLSG--NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          32 LVEVDLSG--NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             eeEEeccC--CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            44555553  3445668889876554  455555554  1121112       233556789999999999875432 22


Q ss_pred             C----CcccCCcccEEEeeeeEeC---hhhHH----HH-----hccCCccceEEEEeeecCCCCcce--EEEec-Cccce
Q 046658          150 C----VGTCFPTMKVLHMQLQNLD---NSLTE----KM-----FSACPCLEELSVHAYFDADDSRTN--FIIAS-STLKH  210 (413)
Q Consensus       150 ~----~~~~~~~L~~L~L~~~~~~---~~~l~----~l-----~~~cp~Le~L~l~~~~~~~~~~~~--~~i~~-~~L~~  210 (413)
                      .    ..++-..|++|.|.++.++   +.-+.    .+     .+.-|.||......++........  ....+ ..|+.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            2    3456678999999999873   22232    11     345788998887777661111110  11122 46888


Q ss_pred             eEEEeeecCCCCCC-CCcce----EEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCCCC
Q 046658          211 FTLTVVIDTDNHFS-EIDHT----VMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSF  285 (413)
Q Consensus       211 L~i~~~~~~~~~~~-~~~~~----~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~  285 (413)
                      +.|.     ....- .|...    -...+.+|+.|++.++.+.                       ..-+..-...+|..
T Consensus       190 vki~-----qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft-----------------------~~gS~~La~al~~W  241 (388)
T COG5238         190 VKIQ-----QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT-----------------------LEGSRYLADALCEW  241 (388)
T ss_pred             EEee-----ecCcCcchhHHHHHHHHHHhCcceeeeccccchh-----------------------hhhHHHHHHHhccc
Confidence            8887     43321 11111    1124667777777773220                       00000001235667


Q ss_pred             CCeeEEEEEeCCCChhhHHHHHh-----cCCCCceEEecc
Q 046658          286 SELTFLEVKLAGSGWRVLPIILH-----SSPNLERLLVDK  320 (413)
Q Consensus       286 ~~L~~L~l~~~~~~~~~l~~ll~-----~~p~L~~L~i~~  320 (413)
                      ++|++|.+..|-....+...+++     ..|+|+.|..+.
T Consensus       242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y  281 (388)
T COG5238         242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY  281 (388)
T ss_pred             chhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence            78999999998765444444444     457888887665

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=90.61  E-value=0.09  Score=47.73  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=29.8

Q ss_pred             CCCCChHHHHHHhcC-----CCcccchhhcccchhhHHH
Q 046658            5 ISDLPDAILGRIVSF-----LPTKNTVATSVLSRRWKHV   38 (413)
Q Consensus         5 is~LPd~lL~~Ils~-----L~~~d~~r~s~lSrrWr~l   38 (413)
                      |+.||||||..||..     ++.++..++|.|||.|+..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            679999999999965     4679999999999999853

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.58  E-value=0.07  Score=47.28  Aligned_cols=106  Identities=19%  Similarity=0.152  Sum_probs=61.2

Q ss_pred             ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeecCCCCcceEEE--ecCc
Q 046658          131 TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFDADDSRTNFII--ASST  207 (413)
Q Consensus       131 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i--~~~~  207 (413)
                      ....|+.|++.++...... ..-.+|+||+|.++.... ....+.-++..||+|.+|.+..+.. ..+.+ +.-  .-++
T Consensus        41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~lst-l~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KDLST-LRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-ccccc-cchhhhhcc
Confidence            3456666776665443332 223567888888887755 4455677777889999999988877 33333 211  1245


Q ss_pred             cceeEEEeeecCCCCCCCC---cceEEEecCceeEEEEee
Q 046658          208 LKHFTLTVVIDTDNHFSEI---DHTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       208 L~~L~i~~~~~~~~~~~~~---~~~~~~~~P~L~~L~~~~  244 (413)
                      |+.|.+.     +|....-   ...+..-+|.|.+|+..+
T Consensus       118 L~~Ldl~-----n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  118 LKSLDLF-----NCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhhcc-----cCCccccccHHHHHHHHhhhhccccccc
Confidence            6677776     6653210   011222356666665554

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.63  E-value=0.84  Score=43.98  Aligned_cols=69  Identities=9%  Similarity=0.023  Sum_probs=39.4

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccc-cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      .+...|+++.+.  ...+|.   --++|++|.+.+|.... .| .. -.++|++|++.+|..    +..+   -+.|+.|
T Consensus        52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP-~~-LP~nLe~L~Ls~Cs~----L~sL---P~sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLP-GS-IPEGLEKLTVCHCPE----ISGL---PESVRSL  117 (426)
T ss_pred             cCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCC-ch-hhhhhhheEccCccc----cccc---ccccceE
Confidence            678888888653  334452   12468999998875432 22 11 125788888887732    1111   1356777


Q ss_pred             EEEe
Q 046658          187 SVHA  190 (413)
Q Consensus       187 ~l~~  190 (413)
                      .+..
T Consensus       118 ~L~~  121 (426)
T PRK15386        118 EIKG  121 (426)
T ss_pred             EeCC
Confidence            6653

>PRK15386 type III secretion protein GogB; Provisional

Probab=87.99  E-value=1.1  Score=43.29  Aligned_cols=50  Identities=14%  Similarity=0.162  Sum_probs=24.4

Q ss_pred             CCcccEEEeeeeEeChhhHHHHhccCC-ccceEEEEeeecCCCCcceEE-EecCccceeEEE
Q 046658          155 FPTMKVLHMQLQNLDNSLTEKMFSACP-CLEELSVHAYFDADDSRTNFI-IASSTLKHFTLT  214 (413)
Q Consensus       155 ~~~L~~L~L~~~~~~~~~l~~l~~~cp-~Le~L~l~~~~~~~~~~~~~~-i~~~~L~~L~i~  214 (413)
                      ++++++|+++++.+..  +.    ..| .|++|.+.+|..   +.. +. .-.++|+.|.+.
T Consensus        51 ~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~n---Lts-LP~~LP~nLe~L~Ls  102 (426)
T PRK15386         51 ARASGRLYIKDCDIES--LP----VLPNELTEITIENCNN---LTT-LPGSIPEGLEKLTVC  102 (426)
T ss_pred             hcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCC---ccc-CCchhhhhhhheEcc
Confidence            4666666666653311  11    122 466666666655   222 11 112456666666

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.42  E-value=0.028  Score=52.77  Aligned_cols=176  Identities=14%  Similarity=0.137  Sum_probs=86.3

Q ss_pred             CCcEEEEEEECcceeeecCcccccccc---ccEEEeCCccccccCCCcccCCcc-cEEEeeeeEeChhhHHHHhccCCcc
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTT---LEVLKLDSDCVINAPCVGTCFPTM-KVLHMQLQNLDNSLTEKMFSACPCL  183 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~---L~~L~L~~~~~~~~~~~~~~~~~L-~~L~L~~~~~~~~~l~~l~~~cp~L  183 (413)
                      +..+.++++...  ...+|..+|....   ..+.+++++....+|.....+..+ +.+.++...+  ..+...++..++|
T Consensus       362 i~tkiL~~s~~q--lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i--sfv~~~l~~l~kL  437 (565)
T KOG0472|consen  362 ITTKILDVSDKQ--LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI--SFVPLELSQLQKL  437 (565)
T ss_pred             hhhhhhcccccc--cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc--ccchHHHHhhhcc
Confidence            345555555332  3456666666644   667777777666665322222222 2233332222  2345556777888


Q ss_pred             ceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEE
Q 046658          184 EELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVV  263 (413)
Q Consensus       184 e~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i  263 (413)
                      .-|.++++.. .+++. -.-.--+|+.|.++     ...+-. ...+.-....|+.+-.+..           .      
T Consensus       438 t~L~L~NN~L-n~LP~-e~~~lv~Lq~LnlS-----~NrFr~-lP~~~y~lq~lEtllas~n-----------q------  492 (565)
T KOG0472|consen  438 TFLDLSNNLL-NDLPE-EMGSLVRLQTLNLS-----FNRFRM-LPECLYELQTLETLLASNN-----------Q------  492 (565)
T ss_pred             eeeecccchh-hhcch-hhhhhhhhheeccc-----cccccc-chHHHhhHHHHHHHHhccc-----------c------
Confidence            8888887765 33322 11112236666666     322110 0000000000111100100           0      


Q ss_pred             EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccce
Q 046658          264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWF  324 (413)
Q Consensus       264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~  324 (413)
                                +...+...+..+.||+.|++..+  +...++.++.+|.+|++|.+.+.+++
T Consensus       493 ----------i~~vd~~~l~nm~nL~tLDL~nN--dlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  493 ----------IGSVDPSGLKNMRNLTTLDLQNN--DLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ----------ccccChHHhhhhhhcceeccCCC--chhhCChhhccccceeEEEecCCccC
Confidence                      00000111334566777776553  37788899999999999999886554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.27  E-value=0.028  Score=50.28  Aligned_cols=58  Identities=19%  Similarity=0.154  Sum_probs=38.1

Q ss_pred             cccccEEEeCCccccccCCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEee
Q 046658          132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAY  191 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~  191 (413)
                      .+.|++|.|+-+.+..+. ....|.+|+.|+|+...+ +-+.+.. +.+.|+|+.|+|..+
T Consensus        40 Mp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDEN   98 (388)
T ss_pred             cccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccC
Confidence            356777777766555554 456677788888877777 4444444 356777888877664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.63  E-value=0.091  Score=44.83  Aligned_cols=63  Identities=16%  Similarity=0.213  Sum_probs=42.2

Q ss_pred             CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec-CCCCcceEEEecCccceeEEE
Q 046658          151 VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD-ADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       151 ~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      ...++++++.|.+.+|.. ++..++.+-...|+|+.|+|+.|.- .+..-. .-...++|+.|.+.
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLY  184 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhc
Confidence            445677788888888877 8888888877788888888888876 221111 11234566666665

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.56  E-value=0.54  Score=25.69  Aligned_cols=23  Identities=9%  Similarity=0.111  Sum_probs=13.8

Q ss_pred             CCcccEEEeeeeEe-ChhhHHHHh
Q 046658          155 FPTMKVLHMQLQNL-DNSLTEKMF  177 (413)
Q Consensus       155 ~~~L~~L~L~~~~~-~~~~l~~l~  177 (413)
                      +|+|++|+|.+|.. ++.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            45666666666654 666665543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=84.66  E-value=0.34  Score=48.73  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=34.9

Q ss_pred             CccCCCCChHHHHHHhcCCCcccchhhcccchhhHHH
Q 046658            2 GYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHV   38 (413)
Q Consensus         2 ~D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l   38 (413)
                      .|.|+.||-++..+||++|+.++.+..+.+|+.|+.+
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            5789999999999999999999999999999999864

>PLN03150 hypothetical protein; Provisional

Probab=84.23  E-value=1  Score=46.50  Aligned_cols=82  Identities=16%  Similarity=0.175  Sum_probs=61.1

Q ss_pred             cEEEEEEECcceeeecCccccccccccEEEeCCcccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658          110 VRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV  188 (413)
Q Consensus       110 v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  188 (413)
                      +..|.+.... -...+|..+..+++|+.|+|.+|.+. ..|.....+++|+.|+|.++.+... +...+..++.|+.|.|
T Consensus       420 v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence            4445544332 23467778888899999999998765 3454677899999999999887432 3445678999999999


Q ss_pred             Eeeec
Q 046658          189 HAYFD  193 (413)
Q Consensus       189 ~~~~~  193 (413)
                      .+|..
T Consensus       498 s~N~l  502 (623)
T PLN03150        498 NGNSL  502 (623)
T ss_pred             cCCcc
Confidence            99876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 52/386 (13%), Positives = 115/386 (29%), Gaps = 120/386 (31%)

Query: 53  LRPPASAYVV---MPGFVDFVQTVL----LRTHPGNIDSFCLHCSRPIDLSSVNFWLSSA 105
           LRP  +  V+   + G     +T +      ++        + C     +    FWL+  
Sbjct: 147 LRP--AKNVLIDGVLGSG---KTWVALDVCLSYK-------VQCKMDFKI----FWLN-- 188

Query: 106 LMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQL 165
                      L   N  + +  +     L+ L    D    +    +    ++ +H   
Sbjct: 189 -----------LKNCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQ 231

Query: 166 QNLDNSLTEKMFSACPCL------EELSVHAYFD---------ADDSRTNFIIASSTLKH 210
             L   L  K +    CL      +       F+              T+F+ A++T  H
Sbjct: 232 AELRRLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT-TH 288

Query: 211 FTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYV--------------LEEMH 256
            +L          +  D    L     + L      L   V              + +  
Sbjct: 289 ISL---DHHSMTLTP-DEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 257 CLHEAVVHISYAEWSQAVDQCYDNFCPS-----FSELT-FLE-VKLAGSGWRVLPIILHS 309
              +   H++  + +  ++   +   P+     F  L+ F     +        P IL  
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--------PTIL-- 391

Query: 310 SPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKK---IEI------IRVQGDED 360
              L  +      WF++ K     + +      L+++  K   I I      ++V+ + +
Sbjct: 392 ---LSLI------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 361 ---EQRVIE-YFLQQCKCLEVMIINC 382
               + +++ Y + +    + +I   
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPY 468

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 72/454 (15%), Positives = 130/454 (28%), Gaps = 129/454 (28%)

Query: 1   MGYRISDLPDAILGRIVSFLP--TKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPAS 58
           +    S  P+ +L  +   L     N  + S  S   K    S+        L  +P  +
Sbjct: 189 LKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYEN 245

Query: 59  AYVVMPGFVDFVQTVLLRTHPGNIDSFCLHC-----SRPIDLSSVNFWLSSALMQ--SVR 111
             +V+      VQ      +    ++F L C     +R       +F LS+A     S+ 
Sbjct: 246 CLLVL----LNVQ------NAKAWNAFNLSCKILLTTR--FKQVTDF-LSAATTTHISLD 292

Query: 112 ELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNS 171
              + L       LL   Y     + L  +     N   +     +++       N  + 
Sbjct: 293 HHSMTLTPDEVKSLLLK-YLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 172 LTEKM---FSAC-PCLEELSVHAYFDA-----DDSRTNFIIASSTLKHF----TLTVVID 218
             +K+     +    LE       FD        +     I +  L         + V+ 
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDVIKSDVMV 406

Query: 219 TDNHF---SEID----------HTVML----KAPNLQCLH--IIADRLGSYVLEEMHCLH 259
             N     S ++           ++ L    K  N   LH  I+      Y + +     
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD----HYNIPKTFDSD 462

Query: 260 EAVV---------HISY--AEWSQAVDQCYDNFCPSFSELTFLEVKL--AGSGWRVLPII 306
           + +          HI +          +    F   F +  FLE K+    + W     I
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHP--ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 307 LHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIE-IIRVQGDEDEQRV- 364
           L+                                   LQ++K  +  I     + E+ V 
Sbjct: 521 LN----------------------------------TLQQLKFYKPYICDNDPKYERLVN 546

Query: 365 -IEYFLQQCKCLEVMIINCK-------ALIFKNQ 390
            I  FL +    E  +I  K       AL+ +++
Sbjct: 547 AILDFLPKI---EENLICSKYTDLLRIALMAEDE 577

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.8
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.69
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.64
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.58
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.54
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.53
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.52
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.5
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.5
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.46
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.43
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.42
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.41
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.4
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.4
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.38
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.32
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.29
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.29
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.24
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.23
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.21
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.14
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.01
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.98
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.94
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.93
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.81
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.78
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.77
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.53
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.52
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.46
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.43
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.36
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.36
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.3
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.29
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.25
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.13
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.1
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.99
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.94
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.2
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.9
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.81
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.01
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	92.95
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	91.26
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	89.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	88.93

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=7.7e-20  Score=185.26  Aligned_cols=218  Identities=17%  Similarity=0.147  Sum_probs=116.6

Q ss_pred             ccCC----CCChHHHHHHhcCC-CcccchhhcccchhhHHHHhccCeeeeecCCCCCCCCccccccchHHHHHHHHHhcc
Q 046658            3 YRIS----DLPDAILGRIVSFL-PTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRT   77 (413)
Q Consensus         3 D~is----~LPd~lL~~Ils~L-~~~d~~r~s~lSrrWr~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~   77 (413)
                      ||++    .||||+|.+||+|| +++|+++++.|||||++++...+...+....+              ......++.+.
T Consensus         7 ~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~--------------~~~~~~~~~~~   72 (592)
T 3ogk_B            7 KRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCY--------------TATPDRLSRRF   72 (592)
T ss_dssp             -----CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGG--------------GSCHHHHHHHC
T ss_pred             hhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecc--------------ccChHHHHHhC
Confidence            4555    89999999999999 89999999999999999865544221111111              01122232222


Q ss_pred             CCCCcceEEeeecCC---------CCcccHHHHHHHHH--hCCcEEEEEEECcceeeecCccccc-ccc-ccEEEeCCcc
Q 046658           78 HPGNIDSFCLHCSRP---------IDLSSVNFWLSSAL--MQSVRELQLYLGQQNRVQLLETIYT-STT-LEVLKLDSDC  144 (413)
Q Consensus        78 ~~~~l~~l~l~~~~~---------~~~~~~~~wl~~a~--~~~v~~L~l~~~~~~~~~lp~~~~~-~~~-L~~L~L~~~~  144 (413)
                        +.++++.+.....         ........|+....  .+++++|+++...-.... +..+.. +++ |++|+|.+|.
T Consensus        73 --~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           73 --PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD-LDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             --TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHH-HHHHHHHHGGGCCEEEEESCE
T ss_pred             --CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHH-HHHHHHhccccCcEEECcCCC
Confidence              3378888765321         11233455665544  257777777744211111 111212 334 7777777664


Q ss_pred             cccc---CCCcccCCcccEEEeeeeEeCh---hhHHHHhccCCccceEEEEeeecC----CCCcceEEEecCccceeEEE
Q 046658          145 VINA---PCVGTCFPTMKVLHMQLQNLDN---SLTEKMFSACPCLEELSVHAYFDA----DDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       145 ~~~~---~~~~~~~~~L~~L~L~~~~~~~---~~l~~l~~~cp~Le~L~l~~~~~~----~~~~~~~~i~~~~L~~L~i~  214 (413)
                      ....   +....++++|++|+|.++.+++   ..+..+...||.|++|.+.++...    ..+.. +...+++|+.|.+.
T Consensus       150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~  228 (592)
T 3ogk_B          150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVG  228 (592)
T ss_dssp             EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECS
T ss_pred             CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEecc
Confidence            2211   1122356777777777776622   225566667777777777655441    01111 11234667777776


Q ss_pred             eeecCCCCCCCCcceEEEecCceeEEEEee
Q 046658          215 VVIDTDNHFSEIDHTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~  244 (413)
                           +|.... ........|+|++|.+..
T Consensus       229 -----~~~~~~-l~~~~~~~~~L~~L~l~~  252 (592)
T 3ogk_B          229 -----DFEILE-LVGFFKAAANLEEFCGGS  252 (592)
T ss_dssp             -----SCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred             -----CccHHH-HHHHHhhhhHHHhhcccc
Confidence                 654321 112222456666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=5.3e-21  Score=193.85  Aligned_cols=220  Identities=15%  Similarity=0.161  Sum_probs=128.2

Q ss_pred             CccCCCCChHHHHHHhcCCC-cccchhhcccchhhHHHHhc-cCeeeeecCCCCCCCCccccccchHHHHHHHHHhccCC
Q 046658            2 GYRISDLPDAILGRIVSFLP-TKNTVATSVLSRRWKHVWTS-LANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHP   79 (413)
Q Consensus         2 ~D~is~LPd~lL~~Ils~L~-~~d~~r~s~lSrrWr~l~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~   79 (413)
                      .|+++.||||+|.+||+||+ .+|+++++.|||||+++... ...+.+......        .       ....+  +..
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--------~-------~~~~~--~~~   65 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--------S-------PATVI--RRF   65 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--------C-------HHHHH--HHC
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--------C-------HHHHH--hhC
Confidence            58999999999999999999 99999999999999988322 223444322110        0       01112  122


Q ss_pred             CCcceEEeeecCCCC---------cccHHHHHHHHHh--CCcEEEEEEECcceeeecCccccccccccEEEeCCcccc-c
Q 046658           80 GNIDSFCLHCSRPID---------LSSVNFWLSSALM--QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVI-N  147 (413)
Q Consensus        80 ~~l~~l~l~~~~~~~---------~~~~~~wl~~a~~--~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~  147 (413)
                      +.++++.+.......         ...+..|+.....  .++++|+++...-....+......|++|++|+|.+|... +
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            458888888753210         1345677776543  578888888543211111111125788888888887322 2


Q ss_pred             --cCCCcccCCcccEEEeeeeEeC---hhhHHHHhccCCccceEEEEeeec---CCCCcceEEEecCccceeEEEeeecC
Q 046658          148 --APCVGTCFPTMKVLHMQLQNLD---NSLTEKMFSACPCLEELSVHAYFD---ADDSRTNFIIASSTLKHFTLTVVIDT  219 (413)
Q Consensus       148 --~~~~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~cp~Le~L~l~~~~~---~~~~~~~~~i~~~~L~~L~i~~~~~~  219 (413)
                        ++....++++|++|+|.++.++   ...+..+...||.|++|.+.+|..   ...+.. +...+++|++|.+.     
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-l~~~~~~L~~L~L~-----  219 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER-LVTRCPNLKSLKLN-----  219 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH-HHHHCTTCCEEECC-----
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH-HHHhCCCCcEEecC-----
Confidence              2212346888888888877762   334666666788888888887752   011122 22235788888888     


Q ss_pred             CCCCCCCcceEEEecCceeEEEEee
Q 046658          220 DNHFSEIDHTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       220 ~~~~~~~~~~~~~~~P~L~~L~~~~  244 (413)
                      +|....+.......+|+|+.|.+.+
T Consensus       220 ~~~~~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          220 RAVPLEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             TTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred             CCCcHHHHHHHHhcCCcceEccccc
Confidence            7743322222223567777776544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=1.4e-19  Score=170.21  Aligned_cols=232  Identities=16%  Similarity=0.142  Sum_probs=125.4

Q ss_pred             cCCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhc---cCeeeeecCCCCCCCCccccccchHHHHHHHHHhccCCC
Q 046658            4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTS---LANLSFDDRLCLRPPASAYVVMPGFVDFVQTVLLRTHPG   80 (413)
Q Consensus         4 ~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~   80 (413)
                      .++.||||++.+||++|+.+|+++++.|||+|+.+...   ...+++....+         .    ...+...+.    +
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~---------~----~~~~~~~~~----~   70 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL---------H----PDVTGRLLS----Q   70 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC---------C----HHHHHHHHH----T
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccC---------C----HHHHHhhhh----c
Confidence            48999999999999999999999999999999998642   23444433222         1    112222221    1


Q ss_pred             CcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCcccccc-CCCcccCCccc
Q 046658           81 NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINA-PCVGTCFPTMK  159 (413)
Q Consensus        81 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~  159 (413)
                      .++.+.+....-...  ...   .....++++|+++.+.-....+|..+..+++|++|+|.+|...+. +.....+++|+
T Consensus        71 ~l~~L~l~~n~l~~~--~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           71 GVIAFRCPRSFMDQP--LAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             TCSEEECTTCEECSC--CCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             cceEEEcCCcccccc--chh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence            255555543211000  000   011245666666544321122555556667777777777644321 11344567777


Q ss_pred             EEEeeee-EeChhhHHHHhccCCccceEEEEee-ecCC-CCcceEEEecC-ccceeEEEeeecCCCC--CC-CCcceEEE
Q 046658          160 VLHMQLQ-NLDNSLTEKMFSACPCLEELSVHAY-FDAD-DSRTNFIIASS-TLKHFTLTVVIDTDNH--FS-EIDHTVML  232 (413)
Q Consensus       160 ~L~L~~~-~~~~~~l~~l~~~cp~Le~L~l~~~-~~~~-~~~~~~~i~~~-~L~~L~i~~~~~~~~~--~~-~~~~~~~~  232 (413)
                      +|+|.++ .+++..+..++..||.|++|.+.+| ...+ .+.. .....| +|++|.+.     +|.  .. .+......
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~-----~~~~~~~~~~l~~~~~  219 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLS-----GYRKNLQKSDLSTLVR  219 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECC-----SCGGGSCHHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeC-----CCcccCCHHHHHHHHh
Confidence            7777777 3466666666777777777777777 3310 0111 112345 67777776     663  11 10111122


Q ss_pred             ecCceeEEEEeeccc-c---eeeeecCCCceEEEE
Q 046658          233 KAPNLQCLHIIADRL-G---SYVLEEMHCLHEAVV  263 (413)
Q Consensus       233 ~~P~L~~L~~~~~~~-~---~~~~~~~~~L~~~~i  263 (413)
                      .+|+|++|+++++.. .   ...+..+++|+.+++
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence            456667766666441 1   223344555555444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.09  E-value=2.1e-10  Score=107.08  Aligned_cols=202  Identities=17%  Similarity=0.155  Sum_probs=127.9

Q ss_pred             HHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCC
Q 046658          102 LSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACP  181 (413)
Q Consensus       102 l~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp  181 (413)
                      +..+...+++.|++....-  ..+|..++.+++|++|+|.++.+...|.....+++|++|+|.++.+.  .+..-+..++
T Consensus        75 l~~~~~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~  150 (328)
T 4fcg_A           75 LEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLN  150 (328)
T ss_dssp             HHHHTSTTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCT
T ss_pred             HhcccccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCc
Confidence            3344447888888886653  37888888999999999999877777756788999999999998775  3445578899


Q ss_pred             ccceEEEEeeecCCCCcceE--------EEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc--eee
Q 046658          182 CLEELSVHAYFDADDSRTNF--------IIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG--SYV  251 (413)
Q Consensus       182 ~Le~L~l~~~~~~~~~~~~~--------~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~--~~~  251 (413)
                      .|+.|.+.+|.....+...+        ....++|+.|.+.     ++.... ........++|++|+++++...  ...
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~-----~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-----WTGIRS-LPASIANLQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE-----EECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc-----CCCcCc-chHhhcCCCCCCEEEccCCCCCcCchh
Confidence            99999999986612122101        1136788888888     665431 1111224677888888875443  223


Q ss_pred             eecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          252 LEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       252 ~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      +..+++|+.+++....      +.......+..+++|++|.+..+... ..++..+..+|+|+.|.+..
T Consensus       225 l~~l~~L~~L~Ls~n~------~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCT------ALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             GGGCTTCCEEECTTCT------TCCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTT
T ss_pred             hccCCCCCEEECcCCc------chhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCC
Confidence            5666777766552200      00000112335667777777665432 12222356777777777776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.95  E-value=5e-10  Score=113.02  Aligned_cols=238  Identities=12%  Similarity=0.089  Sum_probs=139.1

Q ss_pred             ccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecC
Q 046658          127 ETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASS  206 (413)
Q Consensus       127 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~  206 (413)
                      ..+..+++|++|.+.++.....|.....+++|++|+|.++.+++..+..++..||+|++|.+.++.....+.. +.-.++
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~  342 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV-LAQYCK  342 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH-HHHHCT
T ss_pred             HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHH-HHHhCC
Confidence            3444556666666665433334434557889999999988887777888889999999999985544122222 222457


Q ss_pred             ccceeEEEeeecCC----------CCCCCC--cceEEEecCceeEEEEeecccc---eeeee-cCCCceEEEEEeeccee
Q 046658          207 TLKHFTLTVVIDTD----------NHFSEI--DHTVMLKAPNLQCLHIIADRLG---SYVLE-EMHCLHEAVVHISYAEW  270 (413)
Q Consensus       207 ~L~~L~i~~~~~~~----------~~~~~~--~~~~~~~~P~L~~L~~~~~~~~---~~~~~-~~~~L~~~~i~~~~~~l  270 (413)
                      +|++|.+.     +          |....+  ...+...+|+|++|.+......   ...+. .+++|+.+.+.....  
T Consensus       343 ~L~~L~L~-----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~--  415 (592)
T 3ogk_B          343 QLKRLRIE-----RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR--  415 (592)
T ss_dssp             TCCEEEEE-----CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC--
T ss_pred             CCCEEEee-----cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC--
Confidence            89999998     6          544321  1111224789999988553332   11233 378888877742100  


Q ss_pred             EEEeccc--C---cccCCCCCCeeEEEEEeCCC--ChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCccc
Q 046658          271 SQAVDQC--Y---DNFCPSFSELTFLEVKLAGS--GWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCL  343 (413)
Q Consensus       271 ~l~~~~~--~---~~~~p~~~~L~~L~l~~~~~--~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~  343 (413)
                      .-.+...  +   ...+..+++|++|.+..|..  ....+..+...+|+|+.|.+.....+..+.       ......| 
T Consensus       416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~~~~~-  487 (592)
T 3ogk_B          416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL-------MEFSRGC-  487 (592)
T ss_dssp             CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH-------HHHHTCC-
T ss_pred             CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH-------HHHHhcC-
Confidence            0000000  0   00012367888888887553  355666677778888888887632211100       0001123 


Q ss_pred             ccceeEEEEEeecCCHhHHHHHHHHHhcCCCCceEEEEeec
Q 046658          344 LQRVKKIEIIRVQGDEDEQRVIEYFLQQCKCLEVMIINCKA  384 (413)
Q Consensus       344 ~~~L~~v~i~~~~~~~~~~~l~~~ll~~a~~Le~l~i~~~~  384 (413)
                       .+|+++.+.+..-.   ..-+..++.+.+.|+.+.+..+.
T Consensus       488 -~~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          488 -PNLQKLEMRGCCFS---ERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             -TTCCEEEEESCCCB---HHHHHHHHHHCSSCCEEEEESCB
T ss_pred             -cccCeeeccCCCCc---HHHHHHHHHhcCccCeeECcCCc
Confidence             67888888766521   12234455678888988888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.85  E-value=5e-09  Score=105.66  Aligned_cols=109  Identities=15%  Similarity=0.181  Sum_probs=74.9

Q ss_pred             CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcc-eeeecCccccccccccEEEeCCccccccC-----CCcc
Q 046658           80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSDCVINAP-----CVGT  153 (413)
Q Consensus        80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-----~~~~  153 (413)
                      +.++.+.+.... .....+.....  ...++++|++..+.. ....++.....|++|++|+|.+|.+.+..     ....
T Consensus       105 ~~L~~L~L~~~~-~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          105 TWLEEIRLKRMV-VTDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             TTCCEEEEESCB-CCHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCeEEeeCcE-EcHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            358999998654 33322222221  247899999986632 22335555557899999999988644321     1234


Q ss_pred             cCCcccEEEeeeeE--eChhhHHHHhccCCccceEEEEee
Q 046658          154 CFPTMKVLHMQLQN--LDNSLTEKMFSACPCLEELSVHAY  191 (413)
Q Consensus       154 ~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~~  191 (413)
                      .+++|++|+|.++.  +++..+..++..||.|+.|.+.+|
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            67899999999886  477888888888999999999887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.80  E-value=8.7e-11  Score=109.89  Aligned_cols=107  Identities=12%  Similarity=0.066  Sum_probs=53.2

Q ss_pred             ccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeE
Q 046658          133 TTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFT  212 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~  212 (413)
                      +.++.|++.++.....++....+++|++|+|.++.+++..+..++..||.|++|.+.+|...+.... .....++|++|.
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEE
Confidence            4566666666544443334445666666666666665555556666666666666666644100000 001235566666


Q ss_pred             EEeeecCCCCCCCC--cceEEEecCceeEEEEeec
Q 046658          213 LTVVIDTDNHFSEI--DHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       213 i~~~~~~~~~~~~~--~~~~~~~~P~L~~L~~~~~  245 (413)
                      +.     +|....+  .......+|+|++|++.++
T Consensus       149 L~-----~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          149 LS-----GCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             CT-----TCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CC-----CCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            66     5522110  1111223556666666553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.77  E-value=3.9e-09  Score=98.47  Aligned_cols=228  Identities=12%  Similarity=0.047  Sum_probs=150.3

Q ss_pred             HHHHhccCCCCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC
Q 046658           71 QTVLLRTHPGNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC  150 (413)
Q Consensus        71 ~~~L~~~~~~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~  150 (413)
                      ...+.....+.+..+.+....-.   .+...+..  -.+++.|+++...-.  .+|..+..+++|++|+|.+|.+...|.
T Consensus        72 ~~~l~~~~~~~l~~L~L~~n~l~---~lp~~l~~--l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~  144 (328)
T 4fcg_A           72 ADLLEDATQPGRVALELRSVPLP---QFPDQAFR--LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPA  144 (328)
T ss_dssp             HHHHHHHTSTTCCEEEEESSCCS---SCCSCGGG--GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred             HHHHhcccccceeEEEccCCCch---hcChhhhh--CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcH
Confidence            33343333455888888864421   12121211  368999999876543  788888899999999999997777776


Q ss_pred             CcccCCcccEEEeeeeEeChh---hH-----HHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCC
Q 046658          151 VGTCFPTMKVLHMQLQNLDNS---LT-----EKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNH  222 (413)
Q Consensus       151 ~~~~~~~L~~L~L~~~~~~~~---~l-----~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~  222 (413)
                      ....+++|++|+|.++.....   .+     ...+.+++.|++|.+.+|.. ..+.. .....++|+.|.+.     ++.
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~-~l~~l~~L~~L~L~-----~N~  217 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPA-SIANLQNLKSLKIR-----NSP  217 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCG-GGGGCTTCCEEEEE-----SSC
T ss_pred             HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchH-hhcCCCCCCEEEcc-----CCC
Confidence            678899999999999755211   11     11234699999999999987 33333 11235789999999     887


Q ss_pred             CCCCcceEEEecCceeEEEEeeccc-c--eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC
Q 046658          223 FSEIDHTVMLKAPNLQCLHIIADRL-G--SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG  299 (413)
Q Consensus       223 ~~~~~~~~~~~~P~L~~L~~~~~~~-~--~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~  299 (413)
                      ...- .......|+|++|+++++.. +  ...+..+++|+.+++....      ....-...+..+++|++|+|+.|.. 
T Consensus       218 l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~------~~~~~p~~~~~l~~L~~L~L~~n~~-  289 (328)
T 4fcg_A          218 LSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS------NLLTLPLDIHRLTQLEKLDLRGCVN-  289 (328)
T ss_dssp             CCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT------TCCBCCTTGGGCTTCCEEECTTCTT-
T ss_pred             CCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC------chhhcchhhhcCCCCCEEeCCCCCc-
Confidence            5431 11123568999999998544 2  3356778889887763210      0000011233677899999987653 


Q ss_pred             hhhHHHHHhcCCCCceEEecc
Q 046658          300 WRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       300 ~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      ...++..+..+|+|+.+.+..
T Consensus       290 ~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          290 LSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CCCCCGGGGGSCTTCEEECCG
T ss_pred             hhhccHHHhhccCceEEeCCH
Confidence            334555678899999998876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.73  E-value=4.8e-08  Score=91.90  Aligned_cols=173  Identities=14%  Similarity=0.181  Sum_probs=77.2

Q ss_pred             cccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeE
Q 046658          134 TLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFT  212 (413)
Q Consensus       134 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~  212 (413)
                      +|++|++.++.....+. ....+++|++|+|.+..++.- ....+..++.|++|.+.++.. ..+........++|+.|.
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEE
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEE
Confidence            45555555554444432 244455555555554444211 011234455555555555544 111110001124555555


Q ss_pred             EEeeecCCCCCCCCcc-eEEEecCceeEEEEeecc-cce---eeeecCCCceEEEEEeecceeEEEecccCcccCCCCCC
Q 046658          213 LTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIADR-LGS---YVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSE  287 (413)
Q Consensus       213 i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~~-~~~---~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~  287 (413)
                      +.     ++....-.. ...-..++|++|++.++. ...   ..+..+++|+.+++....  +.-    .....+..+++
T Consensus       131 L~-----~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~----~~~~~l~~l~~  199 (353)
T 2z80_A          131 LL-----GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQS----YEPKSLKSIQN  199 (353)
T ss_dssp             CT-----TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCE----ECTTTTTTCSE
T ss_pred             CC-----CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCc----cCHHHHhcccc
Confidence            55     443221000 011234556666665531 221   123445555555543210  000    00122445667


Q ss_pred             eeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          288 LTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       288 L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      |++|.+..+... .....++..+++|+.|.+..
T Consensus       200 L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~  231 (353)
T 2z80_A          200 VSHLILHMKQHI-LLLEIFVDVTSSVECLELRD  231 (353)
T ss_dssp             EEEEEEECSCST-THHHHHHHHTTTEEEEEEES
T ss_pred             CCeecCCCCccc-cchhhhhhhcccccEEECCC
Confidence            888888776532 11223455678888888776

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.69  E-value=1.1e-08  Score=96.05  Aligned_cols=83  Identities=13%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhHHH
Q 046658          284 SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQR  363 (413)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~  363 (413)
                      .+++|++|.+..+....  + ..+..+|+|+.|.+.......       +   ....  ...+|+.+.+.+-.-...   
T Consensus       241 ~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-------~---~~~~--~l~~L~~L~L~~n~l~~~---  302 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-------I---SVLN--NLSQLNSLFLNNNQLGNE---  302 (347)
T ss_dssp             TCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-------C---GGGG--GCTTCSEEECCSSCCCGG---
T ss_pred             cCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-------C---hhhc--CCCCCCEEECcCCcCCCc---
Confidence            45556666665543321  1 124556666666665521110       0   0111  126778877765432211   


Q ss_pred             HHHHHHhcCCCCceEEEEeecc
Q 046658          364 VIEYFLQQCKCLEVMIINCKAL  385 (413)
Q Consensus       364 l~~~ll~~a~~Le~l~i~~~~~  385 (413)
                       ....+...+.|+++.+..+.-
T Consensus       303 -~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          303 -DMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             -GHHHHHTCTTCSEEECCSSSC
T ss_pred             -ChhHhhccccCCEEEccCCcc
Confidence             123346678888888877553

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.69  E-value=9.9e-09  Score=67.77  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=34.1

Q ss_pred             ccCCCCChHHHHHHhcCCCcccchhhcccchhhHHHHh
Q 046658            3 YRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWT   40 (413)
Q Consensus         3 D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~   40 (413)
                      +.++.||+|++.+||++|+.+|.++++.|||+|+.+..
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999998654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.66  E-value=1.1e-07  Score=89.53  Aligned_cols=79  Identities=11%  Similarity=0.018  Sum_probs=46.5

Q ss_pred             CCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe--ecCCH
Q 046658          285 FSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR--VQGDE  359 (413)
Q Consensus       285 ~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~--~~~~~  359 (413)
                      ...++.+.+......   ...++..+..+|+|+.|++.....+..         +.... ....+|+.+.+.+  +.+..
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i---------~~~~~-~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV---------PDGIF-DRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC---------CTTTT-TTCTTCCEEECCSSCBCCCH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc---------CHHHH-hcCCCCCEEEeeCCCccCcC
Confidence            445666666665443   335667788999999999987332210         01110 1126788888875  34666


Q ss_pred             hHHHHHHHHHhcCC
Q 046658          360 DEQRVIEYFLQQCK  373 (413)
Q Consensus       360 ~~~~l~~~ll~~a~  373 (413)
                      ..+..+...++...
T Consensus       318 ~~l~~l~~~~~~~~  331 (353)
T 2z80_A          318 PRIDYLSRWLNKNS  331 (353)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHhcc
Confidence            66666655555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.64  E-value=1.1e-08  Score=93.38  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=16.2

Q ss_pred             cccccccEEEeCCccccccC-CCcccCCcccEEEeeee
Q 046658          130 YTSTTLEVLKLDSDCVINAP-CVGTCFPTMKVLHMQLQ  166 (413)
Q Consensus       130 ~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~  166 (413)
                      ..+++|++|+|.++.....+ .....+++|++|+|.+.
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            33445555555444333331 12334455555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.61  E-value=3.1e-09  Score=101.38  Aligned_cols=246  Identities=14%  Similarity=0.085  Sum_probs=116.2

Q ss_pred             CCcEEEEEEECcc---eeeecCccccccccccEEEeCCcccccc----CCC-------cccCCcccEEEeeeeEeChh--
Q 046658          108 QSVRELQLYLGQQ---NRVQLLETIYTSTTLEVLKLDSDCVINA----PCV-------GTCFPTMKVLHMQLQNLDNS--  171 (413)
Q Consensus       108 ~~v~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~-------~~~~~~L~~L~L~~~~~~~~--  171 (413)
                      .+++.|+++.+.-   ....++..+..+++|++|+|.+|..-.+    |..       ...+++|++|+|+++.+++.  
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            4677777664321   1222334455567777777776532211    111       13567777777777766433  


Q ss_pred             -hHHHHhccCCccceEEEEeeecC-CCCcceEE---Eec---------CccceeEEEeeecCCCCCCC-Ccc---eEEEe
Q 046658          172 -LTEKMFSACPCLEELSVHAYFDA-DDSRTNFI---IAS---------STLKHFTLTVVIDTDNHFSE-IDH---TVMLK  233 (413)
Q Consensus       172 -~l~~l~~~cp~Le~L~l~~~~~~-~~~~~~~~---i~~---------~~L~~L~i~~~~~~~~~~~~-~~~---~~~~~  233 (413)
                       .+...+..|+.|+.|.+.+|... ..... +.   ...         ++|+.|.+.     +|.... +..   .....
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~l~~~~~~~~~~~L~~L~L~-----~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAK-IARALQELAVNKKAKNAPPLRSIICG-----RNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHH-HHHHHHHHHHHHHHHTCCCCCEEECC-----SSCCTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHH-HHHHHHHHhhhhhcccCCCCcEEECC-----CCCCCcHHHHHHHHHHHh
Confidence             34445566777777777776540 00000 00   001         566666666     554431 101   01113


Q ss_pred             cCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC---hhhHHHHHhcC
Q 046658          234 APNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG---WRVLPIILHSS  310 (413)
Q Consensus       234 ~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~ll~~~  310 (413)
                      .++|++|.+.++......+.                      ......+..+++|++|.|+.+...   ...++..+..+
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~----------------------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIE----------------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHH----------------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             CCCcCEEECcCCCCCHhHHH----------------------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            44566665555322100000                      000002334566777777665543   24456667777


Q ss_pred             CCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhHH-HHHHHHHhcCCCCceEEEEeecc
Q 046658          311 PNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQ-RVIEYFLQQCKCLEVMIINCKAL  385 (413)
Q Consensus       311 p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~-~l~~~ll~~a~~Le~l~i~~~~~  385 (413)
                      |+|+.|.+.....+..+...    -......+...+|+.+.+.+-.-....+ .+...+..+.+.|+.+.+..+.-
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAA----VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHH----HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCcCEEECCCCCCchhhHHH----HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            77777777663222111000    0000000112567776665433222222 34444446677777777766543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.59  E-value=3.4e-09  Score=101.24  Aligned_cols=103  Identities=20%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      ++++.|++....  ...++. .+..+++|++|+|.++.....++ ....+++|++|+|.++.++. .-..++..++.|++
T Consensus        69 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           69 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             ccCcEEECCCCc--ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcE
Confidence            456666655332  122332 34455666666666665554433 24556666666666665531 11223455666666


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEE
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      |.+.++.. ..+........++|+.|.+.
T Consensus       146 L~L~~n~l-~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A          146 LSMSNNNL-ERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             EECCSSCC-CBCCTTTTSSCTTCCEEECC
T ss_pred             EECCCCcc-CccChhhccCCCCCCEEECC
Confidence            66666654 11110000123566666666

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.58  E-value=1.2e-07  Score=92.73  Aligned_cols=183  Identities=17%  Similarity=0.194  Sum_probs=90.6

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .++++|++....-  ..++. +..+++|++|+|.+|.....+ ....+++|++|++.++.+.+-  . -+..++.|++|.
T Consensus        90 ~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~  162 (466)
T 1o6v_A           90 TKLVDILMNNNQI--ADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLS  162 (466)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEE
T ss_pred             ccCCEEECCCCcc--ccChh-hcCCCCCCEEECCCCCCCCCh-HHcCCCCCCEEECCCCccCCC--h-hhccCCcccEee
Confidence            4555555553321  22233 445566666666666554444 355566666666666665221  1 145566666666


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEee
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHIS  266 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~~  266 (413)
                      +.++..  ....  ....++|+.|.+.     ++....- . .....++|++|++.++... ...+..+++|+.+.+...
T Consensus       163 l~~~~~--~~~~--~~~l~~L~~L~l~-----~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          163 FGNQVT--DLKP--LANLTTLERLDIS-----SNKVSDI-S-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN  231 (466)
T ss_dssp             EEESCC--CCGG--GTTCTTCCEEECC-----SSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCCccc--Cchh--hccCCCCCEEECc-----CCcCCCC-h-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCC
Confidence            653322  1111  0123567777777     6654321 1 1124577888877775442 223556777777666321


Q ss_pred             cceeEEEecccCcccCCCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEecc
Q 046658          267 YAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       267 ~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      .  +    ..  ...+..+++|++|.+..+... ...    +..+++|+.|.+..
T Consensus       232 ~--l----~~--~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          232 Q--L----KD--IGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGA  274 (466)
T ss_dssp             C--C----CC--CGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCS
T ss_pred             C--c----cc--chhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCC
Confidence            1  0    00  011234455666666554432 111    45556666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.58  E-value=2.3e-08  Score=90.36  Aligned_cols=60  Identities=20%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ++|++|+|.++.+...+. ....+++|++|+|.+..++. .-..++..++.|++|.+.++..
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcC
Confidence            456666666665544443 34556666666666555421 1122335566666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.56  E-value=1.6e-08  Score=99.25  Aligned_cols=198  Identities=16%  Similarity=0.074  Sum_probs=107.3

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      .++++|+++...- ....|..+..+++|++|+|.++.....|. ...++++|++|+|.+..+... ....+..++.|++|
T Consensus        56 ~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L  133 (477)
T 2id5_A           56 PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL  133 (477)
T ss_dssp             TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEE
Confidence            4677777764432 11224556667888888888876666653 346778888888887665221 12334667888888


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEE
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVV  263 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i  263 (413)
                      .+.++.. ..+........++|+.|.+.     ++....-........++|+.|++.++...   ...+..+++|+.+.+
T Consensus       134 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          134 EVGDNDL-VYISHRAFSGLNSLEQLTLE-----KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             EECCTTC-CEECTTSSTTCTTCCEEEEE-----SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred             ECCCCcc-ceeChhhccCCCCCCEEECC-----CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence            8877654 11000000123678888888     76543211111224577888888775442   234566777777766


Q ss_pred             EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      .....  .-.+.    .......+|++|.+..+... ..-...+..+++|+.|.+..
T Consensus       208 ~~~~~--~~~~~----~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          208 SHWPY--LDTMT----PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             ECCTT--CCEEC----TTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCS
T ss_pred             CCCcc--ccccC----cccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCC
Confidence            43110  00000    00112236677777665432 11112455667777776665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.56  E-value=1.1e-07  Score=93.13  Aligned_cols=160  Identities=18%  Similarity=0.199  Sum_probs=94.9

Q ss_pred             CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCccc
Q 046658           80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMK  159 (413)
Q Consensus        80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~  159 (413)
                      +.++.+.+....-...   ..   .....+++.|++....-  ..++. +..+++|++|++.+|.....+ ....+++|+
T Consensus        90 ~~L~~L~l~~n~l~~~---~~---~~~l~~L~~L~L~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~  159 (466)
T 1o6v_A           90 TKLVDILMNNNQIADI---TP---LANLTNLTGLTLFNNQI--TDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQ  159 (466)
T ss_dssp             TTCCEEECCSSCCCCC---GG---GTTCTTCCEEECCSSCC--CCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCS
T ss_pred             ccCCEEECCCCccccC---hh---hcCCCCCCEEECCCCCC--CCChH-HcCCCCCCEEECCCCccCCCh-hhccCCccc
Confidence            3477777765432211   11   22346899999986542  33444 677899999999999776665 567788888


Q ss_pred             EEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeE
Q 046658          160 VLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQC  239 (413)
Q Consensus       160 ~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~  239 (413)
                      +|++.....+..   . +..++.|++|.+.+|.. ..+.. + ...++|+.|.+.     +|.......  ....++|+.
T Consensus       160 ~L~l~~~~~~~~---~-~~~l~~L~~L~l~~n~l-~~~~~-l-~~l~~L~~L~l~-----~n~l~~~~~--~~~l~~L~~  225 (466)
T 1o6v_A          160 QLSFGNQVTDLK---P-LANLTTLERLDISSNKV-SDISV-L-AKLTNLESLIAT-----NNQISDITP--LGILTNLDE  225 (466)
T ss_dssp             EEEEEESCCCCG---G-GTTCTTCCEEECCSSCC-CCCGG-G-GGCTTCSEEECC-----SSCCCCCGG--GGGCTTCCE
T ss_pred             EeecCCcccCch---h-hccCCCCCEEECcCCcC-CCChh-h-ccCCCCCEEEec-----CCccccccc--ccccCCCCE
Confidence            888864222211   1 56778888888887766 33322 1 133667777777     665432111  113566777


Q ss_pred             EEEeecccc-eeeeecCCCceEEEE
Q 046658          240 LHIIADRLG-SYVLEEMHCLHEAVV  263 (413)
Q Consensus       240 L~~~~~~~~-~~~~~~~~~L~~~~i  263 (413)
                      |++.++... ...+..+++|+.+++
T Consensus       226 L~l~~n~l~~~~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          226 LSLNGNQLKDIGTLASLTNLTDLDL  250 (466)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             EECCCCCcccchhhhcCCCCCEEEC
Confidence            777664332 123445666666555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.54  E-value=7.5e-09  Score=107.80  Aligned_cols=147  Identities=16%  Similarity=0.178  Sum_probs=92.8

Q ss_pred             CCcEEEEEEECcceeeecCc--cccccccccEEEeCCcccccc-CCC-cccCCcccEEEeeeeEeChhhH--HHHhccCC
Q 046658          108 QSVRELQLYLGQQNRVQLLE--TIYTSTTLEVLKLDSDCVINA-PCV-GTCFPTMKVLHMQLQNLDNSLT--EKMFSACP  181 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~-~~~-~~~~~~L~~L~L~~~~~~~~~l--~~l~~~cp  181 (413)
                      .+++.|+++...- ...+|.  .+..+++|++|+|.+|..... |.. ...+++|++|+|.++.++....  ...+..|+
T Consensus       100 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            4677777765432 223555  677788888888888765433 212 2578888888888887733222  23367888


Q ss_pred             ccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCc
Q 046658          182 CLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCL  258 (413)
Q Consensus       182 ~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L  258 (413)
                      .|++|.+.+|.. .+... . ...++|+.|.+.     ++........ ....++|++|++.++...   ...+.++++|
T Consensus       179 ~L~~L~Ls~n~l-~~~~~-~-~~l~~L~~L~Ls-----~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  249 (768)
T 3rgz_A          179 ELKHLAISGNKI-SGDVD-V-SRCVNLEFLDVS-----SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL  249 (768)
T ss_dssp             TCCEEECCSSEE-ESCCB-C-TTCTTCCEEECC-----SSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred             CCCEEECCCCcc-cccCC-c-ccCCcCCEEECc-----CCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence            888888888876 21111 1 234778888888     7765432222 335678888888875442   2345677777


Q ss_pred             eEEEEE
Q 046658          259 HEAVVH  264 (413)
Q Consensus       259 ~~~~i~  264 (413)
                      +.+++.
T Consensus       250 ~~L~Ls  255 (768)
T 3rgz_A          250 KLLNIS  255 (768)
T ss_dssp             CEEECC
T ss_pred             CEEECC
Confidence            777663

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.53  E-value=3.3e-08  Score=96.39  Aligned_cols=38  Identities=11%  Similarity=0.061  Sum_probs=18.0

Q ss_pred             CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecccc
Q 046658          284 SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKEC  322 (413)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  322 (413)
                      .+++|++|+|..+... ......+..+++|+.|.+.+.+
T Consensus       264 ~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          264 GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence            4455666666554322 1111233455666666665543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.52  E-value=7.2e-08  Score=94.57  Aligned_cols=177  Identities=14%  Similarity=0.072  Sum_probs=73.6

Q ss_pred             cccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658          130 YTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL  208 (413)
Q Consensus       130 ~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L  208 (413)
                      ..+++|++|+|.++.....++ ...++++|++|+|.++.++.- ....+..++.|+.|.+.++.. ..+........++|
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L  202 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRL  202 (477)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCC-CEECTTCSCSCTTC
T ss_pred             cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcC-cEeChhhcccCccc
Confidence            334455555555443333221 334455555555555544211 122344555555555555543 10000000123456


Q ss_pred             ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEEEEEeecceeEEEecccCcccCCCC
Q 046658          209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSF  285 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~  285 (413)
                      +.|.+.     +|.............++|++|+++++....   ..+..+++|+.+++...  .+.    ......+..+
T Consensus       203 ~~L~l~-----~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~----~~~~~~~~~l  271 (477)
T 2id5_A          203 KVLEIS-----HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN--PIS----TIEGSMLHEL  271 (477)
T ss_dssp             CEEEEE-----CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS--CCC----EECTTSCTTC
T ss_pred             ceeeCC-----CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC--cCC----ccChhhcccc
Confidence            666665     543321100001112356666666543321   12445566665554221  000    0001123345


Q ss_pred             CCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          286 SELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       286 ~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      ++|++|.+..+... ...+..+..+|+|+.|.+..
T Consensus       272 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             TTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCS
T ss_pred             ccCCEEECCCCccc-eECHHHhcCcccCCEEECCC
Confidence            56666666554322 01122345666666666655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.50  E-value=4.4e-07  Score=90.49  Aligned_cols=93  Identities=13%  Similarity=0.050  Sum_probs=45.3

Q ss_pred             CCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhH
Q 046658          282 CPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDE  361 (413)
Q Consensus       282 ~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~  361 (413)
                      +..+.+|++|.+..+... .....++..+++|+.|.+..........     . +... .-...+|+.+.+.+-.-....
T Consensus       168 l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~-~~~~-~~~~~~L~~L~l~~n~l~~~~  239 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQF-----S-PLPV-DEVSSPMKKLAFRGSVLTDES  239 (549)
T ss_dssp             TTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCC-----C-CCSS-CCCCCCCCEEEEESCEEEHHH
T ss_pred             hhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccc-----c-ccch-hhhhhcccceeccccccchhH
Confidence            445667888888765432 1112234568888888887632211000     0 0000 001256777776654433233


Q ss_pred             HHHHHHHHhcCCCCceEEEEe
Q 046658          362 QRVIEYFLQQCKCLEVMIINC  382 (413)
Q Consensus       362 ~~l~~~ll~~a~~Le~l~i~~  382 (413)
                      ..-+...+.+.+.|+.+.+..
T Consensus       240 ~~~l~~~~~~~~~L~~l~l~~  260 (549)
T 2z81_A          240 FNELLKLLRYILELSEVEFDD  260 (549)
T ss_dssp             HHHHHGGGGGCTTCCEEEEES
T ss_pred             HHHHHHHhhhhcccccccccc
Confidence            333333445556666666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.50  E-value=5e-09  Score=96.59  Aligned_cols=77  Identities=10%  Similarity=0.078  Sum_probs=42.0

Q ss_pred             CCCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe--ecCC
Q 046658          282 CPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR--VQGD  358 (413)
Q Consensus       282 ~p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~--~~~~  358 (413)
                      +..+++|++|.++.+... ...  ..+..+|+|+.|++..........        ..... ...+|+.+.+.+  +.+.
T Consensus       195 ~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~-~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          195 FNSLSSLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDYSLNHIMTSKK--------QELQH-FPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTTCTTCCEEECTTSCCSBCCS--GGGTTCTTCCEEECTTSCCCBCSS--------SSCCC-CCTTCCEEECTTCCEECS
T ss_pred             hcCCCCCCEEECCCCccCccCh--hhccCcccCCEeECCCCCCcccCH--------HHHHh-hhccCCEEEccCCCeecc
Confidence            445677888888766532 111  125678899999888733221110        01101 114678887764  3455


Q ss_pred             HhHHHHHHHHH
Q 046658          359 EDEQRVIEYFL  369 (413)
Q Consensus       359 ~~~~~l~~~ll  369 (413)
                      .....+.+++-
T Consensus       264 c~~~~~~~~l~  274 (306)
T 2z66_A          264 CEHQSFLQWIK  274 (306)
T ss_dssp             GGGHHHHHHHH
T ss_pred             cChHHHHHHHH
Confidence            55556666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.48  E-value=3e-08  Score=91.77  Aligned_cols=85  Identities=15%  Similarity=0.041  Sum_probs=42.8

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCcccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      ..++.|+++........+|..+..+++|++|+|.++.+. ..|.....+++|++|+|.+..+... +...+..++.|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence            455666665311112344555555566666666655444 2332345566666666665555211 12233455666666


Q ss_pred             EEEeeec
Q 046658          187 SVHAYFD  193 (413)
Q Consensus       187 ~l~~~~~  193 (413)
                      .+.++..
T Consensus       155 ~L~~N~l  161 (313)
T 1ogq_A          155 TFDGNRI  161 (313)
T ss_dssp             ECCSSCC
T ss_pred             ECcCCcc
Confidence            6665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.47  E-value=2.7e-08  Score=100.65  Aligned_cols=82  Identities=20%  Similarity=0.198  Sum_probs=44.7

Q ss_pred             CcEEEEEEECcceeeecCcc-ccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          109 SVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .++.+++....  ...++.. +..+++|++|++.++.....|.....+++|++|++.++.+... ....+..+|.|+.|.
T Consensus       255 ~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKHY--FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTTCC--CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEE
T ss_pred             ceeEEEeecCc--cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEE
Confidence            44555544322  2233332 3445677777777766555554555667777777776655321 122345566666666


Q ss_pred             EEeeec
Q 046658          188 VHAYFD  193 (413)
Q Consensus       188 l~~~~~  193 (413)
                      +.+|..
T Consensus       332 l~~n~~  337 (606)
T 3t6q_A          332 IKGNTK  337 (606)
T ss_dssp             CCSCSS
T ss_pred             CCCCCc
Confidence            666643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.47  E-value=6.6e-08  Score=93.88  Aligned_cols=199  Identities=15%  Similarity=0.137  Sum_probs=100.8

Q ss_pred             CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.|+++...-  ..++ ..+..+++|++|+|.+|.+...+. ....+++|++|+|.+..++.- ....+..++.|++
T Consensus        88 ~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~  164 (440)
T 3zyj_A           88 RHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRR  164 (440)
T ss_dssp             SSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCE
Confidence            4566666654332  1222 334445667777777665555543 345666777777766655211 1123455677777


Q ss_pred             EEEEeeecCCCCcceEE----EecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCc
Q 046658          186 LSVHAYFDADDSRTNFI----IASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCL  258 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~----i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L  258 (413)
                      |.+.+|..   +.. +.    ...++|+.|.+.     ++....- . .....++|+.|+++++....   ..+.++++|
T Consensus       165 L~l~~~~~---l~~-i~~~~~~~l~~L~~L~L~-----~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  233 (440)
T 3zyj_A          165 LDLGELKR---LSY-ISEGAFEGLSNLRYLNLA-----MCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL  233 (440)
T ss_dssp             EECCCCTT---CCE-ECTTTTTTCSSCCEEECT-----TSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             eCCCCCCC---cce-eCcchhhcccccCeecCC-----CCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccC
Confidence            77766543   111 11    013567777776     5543321 1 11234567777776654322   234556666


Q ss_pred             eEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecc
Q 046658          259 HEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEIT  327 (413)
Q Consensus       259 ~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~  327 (413)
                      +.+.+...  ++.    ......+..+++|++|+|..+... ......+..+++|+.|.+.+.++..+|
T Consensus       234 ~~L~L~~n--~l~----~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          234 QKLWMIQS--QIQ----VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CEEECTTC--CCC----EECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CEEECCCC--cee----EEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccCCC
Confidence            66554210  000    000122445667777777665432 111234566778888887775554433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.46  E-value=1.4e-08  Score=98.88  Aligned_cols=86  Identities=13%  Similarity=0.119  Sum_probs=40.0

Q ss_pred             CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhHHH
Q 046658          284 SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDEQR  363 (413)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~~~  363 (413)
                      .+++|++|.++.+... ......+..+++|+.|.+.........        +.....  ..+|+.+.+.+-.-.    .
T Consensus       321 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~--l~~L~~L~L~~N~l~----~  385 (455)
T 3v47_A          321 GLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALG--------DQSFLG--LPNLKELALDTNQLK----S  385 (455)
T ss_dssp             TCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEEC--------TTTTTT--CTTCCEEECCSSCCS----C
T ss_pred             CcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccC--------hhhccc--cccccEEECCCCccc----c
Confidence            4556666666554321 111234456666666666652211110        011111  256777766542211    0


Q ss_pred             HHHHHHhcCCCCceEEEEeec
Q 046658          364 VIEYFLQQCKCLEVMIINCKA  384 (413)
Q Consensus       364 l~~~ll~~a~~Le~l~i~~~~  384 (413)
                      +....+...+.|+++.+..+.
T Consensus       386 ~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          386 VPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCHhHhccCCcccEEEccCCC
Confidence            111234667778887777654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.44  E-value=9.2e-08  Score=88.59  Aligned_cols=199  Identities=16%  Similarity=0.124  Sum_probs=123.3

Q ss_pred             cccHHHHHHHHHh--CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChh
Q 046658           95 LSSVNFWLSSALM--QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNS  171 (413)
Q Consensus        95 ~~~~~~wl~~a~~--~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  171 (413)
                      ...+...+.....  .++++|+++...-  ..++ ..+..+++|++|+|.+|.....+ ....+++|++|+|.++.++. 
T Consensus        19 ~~~l~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~-   94 (317)
T 3o53_A           19 DSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-   94 (317)
T ss_dssp             TTTHHHHHHHHHTTGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEE-
T ss_pred             ccchhhhHHHHhccCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCcccc-
Confidence            3445555544433  4677877775432  2233 45566788999999888766555 36778899999998887732 


Q ss_pred             hHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceee
Q 046658          172 LTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYV  251 (413)
Q Consensus       172 ~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~  251 (413)
                           +..+|.|+.|.+.++.. .  .. .....++|+.|.+.     ++.............++|++|+++++......
T Consensus        95 -----l~~~~~L~~L~l~~n~l-~--~~-~~~~~~~L~~L~l~-----~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           95 -----LLVGPSIETLHAANNNI-S--RV-SCSRGQGKKNIYLA-----NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             -----EEECTTCCEEECCSSCC-S--EE-EECCCSSCEEEECC-----SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             -----ccCCCCcCEEECCCCcc-C--Cc-CccccCCCCEEECC-----CCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence                 12458899999888876 1  11 22335778888888     77654311112234688999988886553222


Q ss_pred             ----eecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccc
Q 046658          252 ----LEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKE  321 (413)
Q Consensus       252 ----~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~  321 (413)
                          ...+++|+.+++...  .++-.      .....+++|++|.++.+...  .++.-+..+|+|+.|.+...
T Consensus       161 ~~~~~~~l~~L~~L~L~~N--~l~~~------~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYN--FIYDV------KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTS--CCCEE------ECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS
T ss_pred             HHHHhhccCcCCEEECCCC--cCccc------ccccccccCCEEECCCCcCC--cchhhhcccCcccEEECcCC
Confidence                235678887766321  11000      11124678999999887644  22222678899999999874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.44  E-value=4.6e-07  Score=83.53  Aligned_cols=187  Identities=14%  Similarity=0.122  Sum_probs=122.6

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      -.++++|++....-  ..+| .+..+++|++|+|.+|...+.+ ....+++|++|+|.++.+++-  . -+..++.|+.|
T Consensus        40 l~~L~~L~l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDGITTLSAFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL  112 (308)
T ss_dssp             HHTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred             cCCcCEEEeeCCCc--cCch-hhhccCCCCEEEccCCcCCCCh-hHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence            35788888765432  2344 4567899999999998777776 377889999999998888332  1 36778999999


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEe
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHI  265 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~  265 (413)
                      .+.+|.. ..+.. + ...++|+.|.+.     ++....- .. ....++|++|+++++... ...+..+++|+.+.+..
T Consensus       113 ~l~~n~l-~~~~~-l-~~l~~L~~L~l~-----~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          113 DLTSTQI-TDVTP-L-AGLSNLQVLYLD-----LNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD  182 (308)
T ss_dssp             ECTTSCC-CCCGG-G-TTCTTCCEEECC-----SSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             ECCCCCC-CCchh-h-cCCCCCCEEECC-----CCccCcC-cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCC
Confidence            9999877 33333 1 234789999998     7765421 11 224678999988886443 22266777787776632


Q ss_pred             ecceeEEEecccCcccCCCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEecccc
Q 046658          266 SYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKEC  322 (413)
Q Consensus       266 ~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~~  322 (413)
                      ..      +..  ...+..+++|++|.++.+... ...    +..+|+|+.|.+....
T Consensus       183 n~------l~~--~~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          183 NK------ISD--ISPLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             SC------CCC--CGGGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEE
T ss_pred             Cc------cCc--ChhhcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCe
Confidence            10      000  011335667888888776543 221    5788888888887743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.43  E-value=6.5e-08  Score=95.17  Aligned_cols=185  Identities=15%  Similarity=0.132  Sum_probs=114.4

Q ss_pred             CcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          109 SVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      +++.|+++...-  ..+ |..+..+++|++|+|++|.+...+ ....+++|++|+|+++.+++-      ...|.|+.|.
T Consensus        35 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l------~~~~~L~~L~  105 (487)
T 3oja_A           35 NVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQEL------LVGPSIETLH  105 (487)
T ss_dssp             GCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEEE------EECTTCCEEE
T ss_pred             CccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCCC------CCCCCcCEEE
Confidence            677777775442  223 345566788888888888765554 367788888888888876321      2348888888


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccccee---ee-ecCCCceEEEE
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSY---VL-EEMHCLHEAVV  263 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~---~~-~~~~~L~~~~i  263 (413)
                      +.+|.. ..+   .....++|+.|.+.     ++.............++|+.|+++++.....   .+ .++++|+.+++
T Consensus       106 L~~N~l-~~~---~~~~l~~L~~L~L~-----~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          106 AANNNI-SRV---SCSRGQGKKNIYLA-----NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             CCSSCC-CCE---EECCCSSCEEEECC-----SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCCcC-CCC---CccccCCCCEEECC-----CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            888876 221   22234778888888     7765432122223467888888888655322   22 25678877766


Q ss_pred             EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccc
Q 046658          264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKE  321 (413)
Q Consensus       264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~  321 (413)
                      ...  .++-.      .....+++|+.|.++.+...  .++.-+..+|+|+.|.+...
T Consensus       177 s~N--~l~~~------~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          177 QYN--FIYDV------KGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             TTS--CCCEE------ECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTS
T ss_pred             CCC--ccccc------cccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCC
Confidence            321  01000      11224678999998876643  22222668899999998873

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.42  E-value=9.4e-09  Score=94.73  Aligned_cols=233  Identities=13%  Similarity=0.135  Sum_probs=135.8

Q ss_pred             eeecCccccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeCh-hhHHHHhccCCccceEEEEeeecCCCCcc
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDN-SLTEKMFSACPCLEELSVHAYFDADDSRT  199 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~~~~~~~~~~  199 (413)
                      ...+|..++  ++|++|+|.++.....|.. ...+++|++|+|.+..++. ......+..++.|++|.+.++.. ..+..
T Consensus        19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~~l~~   95 (306)
T 2z66_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSS   95 (306)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-EEEEE
T ss_pred             cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-ccChh
Confidence            445565443  6899999999877777643 5688999999999887732 21223344689999999998876 22222


Q ss_pred             eEEEecCccceeEEEeeecCCCCCCCCcc-eEEEecCceeEEEEeecccc---eeeeecCCCceEEEEEeecceeEEEec
Q 046658          200 NFIIASSTLKHFTLTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVVHISYAEWSQAVD  275 (413)
Q Consensus       200 ~~~i~~~~L~~L~i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i~~~~~~l~l~~~  275 (413)
                       .....++|+.|.+.     ++....... ......++|++|+++++...   ...+..+++|+.+.+...  .    +.
T Consensus        96 -~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~----l~  163 (306)
T 2z66_A           96 -NFLGLEQLEHLDFQ-----HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--S----FQ  163 (306)
T ss_dssp             -EEETCTTCCEEECT-----TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC--E----EG
T ss_pred             -hcCCCCCCCEEECC-----CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC--c----cc
Confidence             22345789999888     654321111 11224678999988885443   223566788887766321  0    00


Q ss_pred             c-cCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe
Q 046658          276 Q-CYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR  354 (413)
Q Consensus       276 ~-~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~  354 (413)
                      . .....+..+++|++|.++.+... ...+..+..+|+|+.|.+..........        ....  ...+|+.+.+.+
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~--~l~~L~~L~L~~  232 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDT--------FPYK--CLNSLQVLDYSL  232 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCS--------GGGT--TCTTCCEEECTT
T ss_pred             cccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccCh--------hhcc--CcccCCEeECCC
Confidence            0 00122456778999999876533 1123456788999999998733221110        0011  126788877653


Q ss_pred             ecCCHhHHHHHHHHHhcC-CCCceEEEEeec
Q 046658          355 VQGDEDEQRVIEYFLQQC-KCLEVMIINCKA  384 (413)
Q Consensus       355 ~~~~~~~~~l~~~ll~~a-~~Le~l~i~~~~  384 (413)
                      -.-..    .....+... +.|+.+.+..+.
T Consensus       233 N~l~~----~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          233 NHIMT----SKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             SCCCB----CSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCCcc----cCHHHHHhhhccCCEEEccCCC
Confidence            22100    001112344 489988887654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.41  E-value=3.5e-08  Score=96.22  Aligned_cols=237  Identities=14%  Similarity=0.062  Sum_probs=122.2

Q ss_pred             CCcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.|+++...-  ..+ |..+..+++|++|+|.++.+...++ .+.++++|++|+|.+..++.- ....+..++.|++
T Consensus        75 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCE
Confidence            4566666664432  222 3445566777777777776555442 455677777777777665311 1233456777777


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcce-EEEecCceeEEEEeecccc-eeeeecCCCceEEEE
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHT-VMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVV  263 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~-~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i  263 (413)
                      |.+.++.. ..+........++|+.|.+.     +|........ ..-..++|++|+++++... ...+..+++|+.+++
T Consensus       152 L~L~~N~l-~~~~~~~~~~l~~L~~L~l~-----~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L  225 (452)
T 3zyi_A          152 LWLRNNPI-ESIPSYAFNRVPSLMRLDLG-----ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM  225 (452)
T ss_dssp             EECCSCCC-CEECTTTTTTCTTCCEEECC-----CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred             EECCCCCc-ceeCHhHHhcCCcccEEeCC-----CCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence            77777765 11100000123667777777     6543210000 0113467777777765442 223455666666555


Q ss_pred             EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCccc
Q 046658          264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCL  343 (413)
Q Consensus       264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~  343 (413)
                      ...  .+.    ......+..+++|+.|.+..+... ......+..+|+|+.|.+.....+...        .....  .
T Consensus       226 s~N--~l~----~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~--~  288 (452)
T 3zyi_A          226 SGN--HFP----EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLP--------HDLFT--P  288 (452)
T ss_dssp             TTS--CCS----EECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC--------TTSST--T
T ss_pred             cCC--cCc----ccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccC--------hHHhc--c
Confidence            210  000    000122445667777777665432 111233567788888888763221100        00111  1


Q ss_pred             ccceeEEEEEe--ecCCHhHHHHHHHHHh
Q 046658          344 LQRVKKIEIIR--VQGDEDEQRVIEYFLQ  370 (413)
Q Consensus       344 ~~~L~~v~i~~--~~~~~~~~~l~~~ll~  370 (413)
                      ..+|+.+.+.+  +.+++....+..++-+
T Consensus       289 l~~L~~L~L~~Np~~CdC~~~~l~~~l~~  317 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCDCDILWLAWWLRE  317 (452)
T ss_dssp             CTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred             ccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence            26788887764  3455555555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.41  E-value=2.7e-08  Score=100.66  Aligned_cols=234  Identities=10%  Similarity=0.066  Sum_probs=133.5

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCcccccc---CCCcccCCcccEEEeeeeEeChhhHHHHhccCCcc
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINA---PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCL  183 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  183 (413)
                      ...++++++...... ...  .+..+++|++|++.+|.....   +.....+++|++|+|.++.+..  +...+..++.|
T Consensus       327 l~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L  401 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGS-ISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEEL  401 (606)
T ss_dssp             CSSCCEEEEESCSSC-EEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTC
T ss_pred             CCccceeeccCCcCc-cch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCC
Confidence            467888888865321 111  345678899999988865544   3245678888888888876622  12445678888


Q ss_pred             ceEEEEeeecCCCCc-ceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc----eeeeecCCCc
Q 046658          184 EELSVHAYFDADDSR-TNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG----SYVLEEMHCL  258 (413)
Q Consensus       184 e~L~l~~~~~~~~~~-~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~----~~~~~~~~~L  258 (413)
                      +.|.+.+|....... . .....++|+.|.+.     +|.............++|++|++.++...    ...+..+++|
T Consensus       402 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  475 (606)
T 3vq2_A          402 QHLDFQHSTLKRVTEFS-AFLSLEKLLYLDIS-----YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL  475 (606)
T ss_dssp             CEEECTTSEEESTTTTT-TTTTCTTCCEEECT-----TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CeeECCCCccCCccChh-hhhccccCCEEECc-----CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence            888888876511011 0 01134678888887     76543211111224578888888875442    2245677888


Q ss_pred             eEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCc
Q 046658          259 HEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDC  338 (413)
Q Consensus       259 ~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~  338 (413)
                      +.+++...  .++-    .....+..+++|++|.++.+... ...+..+..+++|+.|++.....+...         ..
T Consensus       476 ~~L~Ls~n--~l~~----~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~p---------~~  539 (606)
T 3vq2_A          476 TFLDLSKC--QLEQ----ISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSK---------GI  539 (606)
T ss_dssp             CEEECTTS--CCCE----ECTTTTTTCTTCCEEECCSSCCS-CEEGGGTTTCTTCCEEECTTSCCCCEE---------SC
T ss_pred             CEEECCCC--cCCc----cChhhhcccccCCEEECCCCcCC-CcCHHHccCCCcCCEEECCCCcCcccC---------Hh
Confidence            87766321  0110    00122446778888888776432 122445677888888888773322100         00


Q ss_pred             cCcccccceeEEEEEe--ecCCHhHHHHHHHH
Q 046658          339 VPQCLLQRVKKIEIIR--VQGDEDEQRVIEYF  368 (413)
Q Consensus       339 ~~~c~~~~L~~v~i~~--~~~~~~~~~l~~~l  368 (413)
                      . .....+|+.+.+.+  +.+.+....++.++
T Consensus       540 ~-~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l  570 (606)
T 3vq2_A          540 L-QHFPKSLAFFNLTNNSVACICEHQKFLQWV  570 (606)
T ss_dssp             G-GGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred             H-hhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence            0 11113577777764  33444545555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.41  E-value=8.9e-08  Score=86.62  Aligned_cols=127  Identities=14%  Similarity=0.135  Sum_probs=69.5

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      ..++++.+....-  ..+ ..+..+++|++|+|.++...+.+ ....+++|++|+|.++.++.- ....+..++.|++|.
T Consensus        41 ~~L~~L~l~~~~i--~~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDI--KSV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCC--CCC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             cceeeeeeCCCCc--ccc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence            5566666654331  122 23556777888888777655544 566777788888877766321 123346677788887


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      +.+|.. ..+........++|+.|.+.     ++....-.....-..++|+.|+++++
T Consensus       116 L~~n~l-~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A          116 LVENQL-QSLPDGVFDKLTNLTYLNLA-----HNQLQSLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             CTTSCC-CCCCTTTTTTCTTCCEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcC-CccCHHHhccCCCCCEEECC-----CCccCccCHHHhccCccCCEEECCCC
Confidence            777765 21111000123567777776     65433211111113466666666664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=4.7e-08  Score=102.22  Aligned_cols=144  Identities=8%  Similarity=0.068  Sum_probs=85.4

Q ss_pred             CCcEEEEEEECcceeeecCc--cccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCc-cc
Q 046658          108 QSVRELQLYLGQQNRVQLLE--TIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPC-LE  184 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-Le  184 (413)
                      .+++.|++....-.  .+|.  .+..+++|+.|+|.+|.+..+| ....+++|++|+|.++.+.  .+..-+..++. |+
T Consensus       548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCC
T ss_pred             CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc--cchHHHhhccccCC
Confidence            36777777755432  6776  6777788888888877666666 6667788888888877664  33344566777 88


Q ss_pred             eEEEEeeecCCCCcceEEE--ecCccceeEEEeeecCCCCCCCCcceE-----EEecCceeEEEEeeccccee---eeec
Q 046658          185 ELSVHAYFDADDSRTNFII--ASSTLKHFTLTVVIDTDNHFSEIDHTV-----MLKAPNLQCLHIIADRLGSY---VLEE  254 (413)
Q Consensus       185 ~L~l~~~~~~~~~~~~~~i--~~~~L~~L~i~~~~~~~~~~~~~~~~~-----~~~~P~L~~L~~~~~~~~~~---~~~~  254 (413)
                      .|.+.+|.. ..+.. ...  ..++|+.|.+.     ++........+     .+..++|+.|+++++.....   .+..
T Consensus       623 ~L~Ls~N~L-~~lp~-~~~~~~~~~L~~L~Ls-----~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~  695 (876)
T 4ecn_A          623 GLGFSHNKL-KYIPN-IFNAKSVYVMGSVDFS-----YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT  695 (876)
T ss_dssp             EEECCSSCC-CSCCS-CCCTTCSSCEEEEECC-----SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHT
T ss_pred             EEECcCCCC-CcCch-hhhccccCCCCEEECc-----CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHcc
Confidence            888887766 23322 111  11347777777     66543211111     01234677777776544311   1235


Q ss_pred             CCCceEEEE
Q 046658          255 MHCLHEAVV  263 (413)
Q Consensus       255 ~~~L~~~~i  263 (413)
                      +++|+.+.+
T Consensus       696 l~~L~~L~L  704 (876)
T 4ecn_A          696 GSPISTIIL  704 (876)
T ss_dssp             TCCCSEEEC
T ss_pred             CCCCCEEEC
Confidence            566666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.40  E-value=3.6e-08  Score=98.85  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=39.0

Q ss_pred             cEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEE
Q 046658          110 VRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVH  189 (413)
Q Consensus       110 v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~  189 (413)
                      ++++.+..........|..+..+++|++|++.++.....|.....+ +|++|++.++.+..  +..  ..+|.|+.|.+.
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~  333 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFT  333 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEE
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCc
Confidence            4445544432223334444455566666666665554444333444 56666666555421  111  245555666555


Q ss_pred             eeec
Q 046658          190 AYFD  193 (413)
Q Consensus       190 ~~~~  193 (413)
                      ++..
T Consensus       334 ~n~~  337 (570)
T 2z63_A          334 SNKG  337 (570)
T ss_dssp             SCBS
T ss_pred             CCcc
Confidence            5544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.40  E-value=1.4e-07  Score=87.16  Aligned_cols=197  Identities=13%  Similarity=0.037  Sum_probs=114.2

Q ss_pred             CCcEEEEEEECcc-eeeecCccccccccccEEEeCC-cccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658          108 QSVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDS-DCVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE  184 (413)
Q Consensus       108 ~~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~-~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  184 (413)
                      ..+++|++....- ....+|..+..+++|++|+|.+ +... ..|.....+++|++|+|.+..++.. +...+..++.|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence            4688888886543 2236888888999999999995 5444 3454677899999999999877421 233467789999


Q ss_pred             eEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecC-ceeEEEEeecccc---eeeeecCCCceE
Q 046658          185 ELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAP-NLQCLHIIADRLG---SYVLEEMHCLHE  260 (413)
Q Consensus       185 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P-~L~~L~~~~~~~~---~~~~~~~~~L~~  260 (413)
                      +|.+.++........ .....++|+.|.+.     ++.............+ +|++|+++++...   ...+..+. |+.
T Consensus       129 ~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~-----~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~  201 (313)
T 1ogq_A          129 TLDFSYNALSGTLPP-SISSLPNLVGITFD-----GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF  201 (313)
T ss_dssp             EEECCSSEEESCCCG-GGGGCTTCCEEECC-----SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred             EEeCCCCccCCcCCh-HHhcCCCCCeEECc-----CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence            999999876111221 11235789999998     7754311111111233 7888888875332   11233333 555


Q ss_pred             EEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          261 AVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       261 ~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      +++..  +.+.-..    ...+..+++|+.|.+..+...  .....+..+|+|+.|++..
T Consensus       202 L~Ls~--N~l~~~~----~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          202 VDLSR--NMLEGDA----SVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             EECCS--SEEEECC----GGGCCTTSCCSEEECCSSEEC--CBGGGCCCCTTCCEEECCS
T ss_pred             EECcC--CcccCcC----CHHHhcCCCCCEEECCCCcee--eecCcccccCCCCEEECcC
Confidence            54421  1111000    122345556666666554322  1111145566666666655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.40  E-value=3.5e-07  Score=85.60  Aligned_cols=252  Identities=13%  Similarity=0.134  Sum_probs=153.2

Q ss_pred             CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCccc
Q 046658           80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMK  159 (413)
Q Consensus        80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~  159 (413)
                      +.++.+.+....-.+   +..   .....++++|++....-  ..++. +..+++|++|++.+|.....++....+++|+
T Consensus        88 ~~L~~L~L~~n~i~~---~~~---~~~l~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~  158 (347)
T 4fmz_A           88 VKLTNLYIGTNKITD---ISA---LQNLTNLRELYLNEDNI--SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLN  158 (347)
T ss_dssp             TTCCEEECCSSCCCC---CGG---GTTCTTCSEEECTTSCC--CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCC
T ss_pred             CcCCEEEccCCcccC---chH---HcCCCcCCEEECcCCcc--cCchh-hccCCceeEEECCCCCCcccccchhhCCCCc
Confidence            357777777543222   111   12236788888875442  23444 6678999999999985444333577899999


Q ss_pred             EEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeE
Q 046658          160 VLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQC  239 (413)
Q Consensus       160 ~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~  239 (413)
                      +|++.++.+.+..-   +..++.|++|.+.+|.. .++..  ....++|+.|.+.     ++.......  ....++|++
T Consensus       159 ~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~-----~n~l~~~~~--~~~~~~L~~  225 (347)
T 4fmz_A          159 YLTVTESKVKDVTP---IANLTDLYSLSLNYNQI-EDISP--LASLTSLHYFTAY-----VNQITDITP--VANMTRLNS  225 (347)
T ss_dssp             EEECCSSCCCCCGG---GGGCTTCSEEECTTSCC-CCCGG--GGGCTTCCEEECC-----SSCCCCCGG--GGGCTTCCE
T ss_pred             EEEecCCCcCCchh---hccCCCCCEEEccCCcc-ccccc--ccCCCccceeecc-----cCCCCCCch--hhcCCcCCE
Confidence            99999887732211   67899999999998876 33332  1234778888888     765432111  235678999


Q ss_pred             EEEeecccc-eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEe
Q 046658          240 LHIIADRLG-SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLV  318 (413)
Q Consensus       240 L~~~~~~~~-~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i  318 (413)
                      |+++++... ...+..+++|+.+++....      +..  ...+..+++|++|.+..+....  + ..+..+|+|+.|.+
T Consensus       226 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~------l~~--~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          226 LKIGNNKITDLSPLANLSQLTWLEIGTNQ------ISD--INAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFL  294 (347)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCSSC------CCC--CGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEEC
T ss_pred             EEccCCccCCCcchhcCCCCCEEECCCCc------cCC--ChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEEC
Confidence            999886553 2226778888887764311      000  1224467788888887765431  1 24678888888888


Q ss_pred             ccccceecccccCCccccCccCcccccceeEEEEEeec--CCHhHHHHHHHHHhcCCCCceEEEEe
Q 046658          319 DKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQ--GDEDEQRVIEYFLQQCKCLEVMIINC  382 (413)
Q Consensus       319 ~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~--~~~~~~~l~~~ll~~a~~Le~l~i~~  382 (413)
                      ..........        .....  ..+|+.+.+.+-.  +...        +...+.|+++.+..
T Consensus       295 ~~n~l~~~~~--------~~l~~--l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          295 NNNQLGNEDM--------EVIGG--LTNLTTLFLSQNHITDIRP--------LASLSKMDSADFAN  342 (347)
T ss_dssp             CSSCCCGGGH--------HHHHT--CTTCSEEECCSSSCCCCGG--------GGGCTTCSEESSSC
T ss_pred             cCCcCCCcCh--------hHhhc--cccCCEEEccCCccccccC--------hhhhhccceeehhh
Confidence            7732221110        00111  2567777765432  2111        56677777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.39  E-value=3.7e-07  Score=84.15  Aligned_cols=166  Identities=13%  Similarity=0.154  Sum_probs=104.7

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      ..+++.|+++...-  ..++. +..+++|++|+|.+|.....+ ....+++|++|+|.++.+++-  .. +..++.|++|
T Consensus        62 l~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L  134 (308)
T 1h6u_A           62 LNNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVL  134 (308)
T ss_dssp             CTTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEE
T ss_pred             cCCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEE
Confidence            36788888875542  33444 666788888888888766655 566788888888888877331  12 6778888888


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEe
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHI  265 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~  265 (413)
                      .+.+|.. ..+.. + ...++|+.|.+.     +|....- .. ....++|+.|+++++... ...+..+++|+.+++..
T Consensus       135 ~l~~n~l-~~~~~-l-~~l~~L~~L~l~-----~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          135 YLDLNQI-TNISP-L-AGLTNLQYLSIG-----NAQVSDL-TP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKN  204 (308)
T ss_dssp             ECCSSCC-CCCGG-G-GGCTTCCEEECC-----SSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTT
T ss_pred             ECCCCcc-CcCcc-c-cCCCCccEEEcc-----CCcCCCC-hh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccC
Confidence            8888876 33322 1 134678888888     7754321 11 224678888888875443 22366777887776632


Q ss_pred             ecceeEEEecccCcccCCCCCCeeEEEEEeCC
Q 046658          266 SYAEWSQAVDQCYDNFCPSFSELTFLEVKLAG  297 (413)
Q Consensus       266 ~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~  297 (413)
                      ..      +..  ...+..+++|+.|.+..+.
T Consensus       205 N~------l~~--~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          205 NQ------ISD--VSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             SC------CCB--CGGGTTCTTCCEEEEEEEE
T ss_pred             Cc------cCc--cccccCCCCCCEEEccCCe
Confidence            10      000  0123466788888887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.39  E-value=2.1e-07  Score=84.67  Aligned_cols=183  Identities=14%  Similarity=0.129  Sum_probs=107.8

Q ss_pred             eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeee-cCCCCcc
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYF-DADDSRT  199 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~-~~~~~~~  199 (413)
                      ...+|..+  .++|++|+|.++.....++ ....+++|++|+|.+..++.- ....+..++.|++|.+.++. . ..+..
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l-~~~~~   98 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQL-RSVDP   98 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTC-CCCCT
T ss_pred             cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCc-cccCH
Confidence            34455543  3689999999987777664 467899999999998876321 12345778999999999996 3 11211


Q ss_pred             eEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccccee---eeecCCCceEEEEEeecceeEEEecc
Q 046658          200 NFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSY---VLEEMHCLHEAVVHISYAEWSQAVDQ  276 (413)
Q Consensus       200 ~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~l~l~~~~  276 (413)
                      ......++|+.|.+.     ++..........-..++|++|+++++.....   .+..+++|+.+++...  .++    .
T Consensus        99 ~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~----~  167 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLD-----RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--RIS----S  167 (285)
T ss_dssp             TTTTTCTTCCEEECT-----TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCC----E
T ss_pred             HHhcCCcCCCEEECC-----CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC--ccc----c
Confidence            011134789999998     7764321111122467888888887544322   2455667766655321  000    0


Q ss_pred             cCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          277 CYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       277 ~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      .....+..+++|++|.+..+... ...+..+..+|+|+.|.+..
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             cCHHHhcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCC
Confidence            00112344566777776665432 11123345667777777665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.38  E-value=3.3e-08  Score=100.67  Aligned_cols=144  Identities=10%  Similarity=0.116  Sum_probs=88.1

Q ss_pred             CCcEEEEEEECcceeeecCc--cccccccccEEEeCCcccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCc-c
Q 046658          108 QSVRELQLYLGQQNRVQLLE--TIYTSTTLEVLKLDSDCVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPC-L  183 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~-L  183 (413)
                      ..+++|++....-.  .+|.  .+..+++|++|+|.+|... ..| ....+++|++|+|.++.+.  .+..-+..++. |
T Consensus       305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L  379 (636)
T 4eco_A          305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQV  379 (636)
T ss_dssp             GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTC
T ss_pred             CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccC
Confidence            57777877765432  6777  6777788888888887766 566 6677788888888877764  33334666777 8


Q ss_pred             ceEEEEeeecCCCCcceEEEe--cCccceeEEEeeecCCCCCCCCcce-------EEEecCceeEEEEeeccccee---e
Q 046658          184 EELSVHAYFDADDSRTNFIIA--SSTLKHFTLTVVIDTDNHFSEIDHT-------VMLKAPNLQCLHIIADRLGSY---V  251 (413)
Q Consensus       184 e~L~l~~~~~~~~~~~~~~i~--~~~L~~L~i~~~~~~~~~~~~~~~~-------~~~~~P~L~~L~~~~~~~~~~---~  251 (413)
                      +.|.+.++.. ..+.. ....  .++|+.|.+.     ++........       ..+..++|++|+++++.....   .
T Consensus       380 ~~L~Ls~N~l-~~lp~-~~~~~~l~~L~~L~Ls-----~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~  452 (636)
T 4eco_A          380 ENLSFAHNKL-KYIPN-IFDAKSVSVMSAIDFS-----YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL  452 (636)
T ss_dssp             CEEECCSSCC-SSCCS-CCCTTCSSCEEEEECC-----SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH
T ss_pred             cEEEccCCcC-cccch-hhhhcccCccCEEECc-----CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHH
Confidence            8888888776 23332 1111  2367777777     6654321111       011345777777777544311   1


Q ss_pred             eecCCCceEEEE
Q 046658          252 LEEMHCLHEAVV  263 (413)
Q Consensus       252 ~~~~~~L~~~~i  263 (413)
                      +..+++|+.+.+
T Consensus       453 ~~~l~~L~~L~L  464 (636)
T 4eco_A          453 FSTGSPLSSINL  464 (636)
T ss_dssp             HHTTCCCSEEEC
T ss_pred             HccCCCCCEEEC
Confidence            234566666655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.38  E-value=1.2e-07  Score=91.93  Aligned_cols=238  Identities=13%  Similarity=0.052  Sum_probs=119.5

Q ss_pred             CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.|+++...-  ..++ ..+..+++|++|+|.++.+...+. .+.++++|++|+|.+..++.- ....+..++.|++
T Consensus        64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCce
Confidence            4556666554332  2222 344556777777777775554442 345677777777776655311 1223456677777


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcce-EEEecCceeEEEEeecccc-eeeeecCCCceEEEE
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHT-VMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVV  263 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~-~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i  263 (413)
                      |.+.++.. ..+........++|+.|.+.     ++........ ..-..++|++|+++++... ...+..+++|+.+++
T Consensus       141 L~L~~N~i-~~~~~~~~~~l~~L~~L~l~-----~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L  214 (440)
T 3zyj_A          141 LWLRNNPI-ESIPSYAFNRIPSLRRLDLG-----ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL  214 (440)
T ss_dssp             EECCSCCC-CEECTTTTTTCTTCCEEECC-----CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred             eeCCCCcc-cccCHHHhhhCcccCEeCCC-----CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEEC
Confidence            77777655 11100000123567777776     6443210000 0113567777777765442 223455566666554


Q ss_pred             EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCccc
Q 046658          264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCL  343 (413)
Q Consensus       264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~  343 (413)
                      ...  .++-    .....+..+++|++|.+..+... ......+..+|+|+.|++.....+...        .....  .
T Consensus       215 s~N--~l~~----~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~--~  277 (440)
T 3zyj_A          215 SGN--HLSA----IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP--------HDLFT--P  277 (440)
T ss_dssp             TTS--CCCE----ECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCC--------TTTTS--S
T ss_pred             CCC--ccCc----cChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccC--------hhHhc--c
Confidence            210  0000    00122445667777777665432 111234567788888887763222110        00111  1


Q ss_pred             ccceeEEEEEe--ecCCHhHHHHHHHHHhc
Q 046658          344 LQRVKKIEIIR--VQGDEDEQRVIEYFLQQ  371 (413)
Q Consensus       344 ~~~L~~v~i~~--~~~~~~~~~l~~~ll~~  371 (413)
                      ..+|+.+.+.+  +.+++....+..++-+.
T Consensus       278 l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~  307 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNCNCDILWLSWWIKDM  307 (440)
T ss_dssp             CTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred             ccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence            26788887764  34555555666555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.38  E-value=6.3e-09  Score=101.58  Aligned_cols=283  Identities=16%  Similarity=0.153  Sum_probs=157.0

Q ss_pred             CcceEEeeecCCCCcccHHHHHH-HHHhCCcEEEEEEECcce---eeecCccccccccccEEEeCCccccccCC--Cccc
Q 046658           81 NIDSFCLHCSRPIDLSSVNFWLS-SALMQSVRELQLYLGQQN---RVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTC  154 (413)
Q Consensus        81 ~l~~l~l~~~~~~~~~~~~~wl~-~a~~~~v~~L~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~  154 (413)
                      .++.+.+.... ....   .|.. ....++++.|+++.+.-.   ...++..+..+++|++|+|+++...+...  ....
T Consensus         4 ~l~~L~Ls~~~-l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            4 DIQSLDIQCEE-LSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEESCC-CCHH---HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             cceehhhhhcc-cCch---hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence            36777776533 2222   2443 333578999999966532   22567777788999999999986543211  1233


Q ss_pred             CC----cccEEEeeeeEeChh---hHHHHhccCCccceEEEEeeec-CCCCcce---EEEecCccceeEEEeeecCCCCC
Q 046658          155 FP----TMKVLHMQLQNLDNS---LTEKMFSACPCLEELSVHAYFD-ADDSRTN---FIIASSTLKHFTLTVVIDTDNHF  223 (413)
Q Consensus       155 ~~----~L~~L~L~~~~~~~~---~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~---~~i~~~~L~~L~i~~~~~~~~~~  223 (413)
                      ++    +|++|+|.++.+++.   .+...+..||.|++|.+.+|.. .......   +....++|++|.+.     +|..
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~-----~n~l  154 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE-----YCSL  154 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-----TSCC
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC-----CCCC
Confidence            44    799999999988553   5667788999999999999876 1111110   00113479999999     8865


Q ss_pred             CCCc----ceEEEecCceeEEEEeeccccee---ee-----ecCCCceEEEEEeecceeEEEecccC----cccCCCCCC
Q 046658          224 SEID----HTVMLKAPNLQCLHIIADRLGSY---VL-----EEMHCLHEAVVHISYAEWSQAVDQCY----DNFCPSFSE  287 (413)
Q Consensus       224 ~~~~----~~~~~~~P~L~~L~~~~~~~~~~---~~-----~~~~~L~~~~i~~~~~~l~l~~~~~~----~~~~p~~~~  287 (413)
                      ....    ....-..|+|++|+++++.....   .+     ...++|+.+.+....      +....    ...+..+++
T Consensus       155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~------l~~~~~~~l~~~l~~~~~  228 (461)
T 1z7x_W          155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG------VTSDNCRDLCGIVASKAS  228 (461)
T ss_dssp             BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC------CBTTHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC------CcHHHHHHHHHHHHhCCC
Confidence            4211    11111358999999988644211   11     124566665552200      00000    001123567


Q ss_pred             eeEEEEEeCCCChhhH----HHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCC-HhHH
Q 046658          288 LTFLEVKLAGSGWRVL----PIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGD-EDEQ  362 (413)
Q Consensus       288 L~~L~l~~~~~~~~~l----~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~-~~~~  362 (413)
                      |++|+++.+.....++    ..+...+++|+.|.+.....+..+..    .-......+  .+|+.+.+.+-.-. ....
T Consensus       229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~~l~~~--~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG----DLCRVLRAK--ESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH----HHHHHHHHC--TTCCEEECTTCCCHHHHHH
T ss_pred             ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH----HHHHHHhhC--CCcceEECCCCCCchHHHH
Confidence            7777777764332222    22333577888887776322111000    000001112  56787777543322 2223


Q ss_pred             HHHHHHHhcCCCCceEEEEeec
Q 046658          363 RVIEYFLQQCKCLEVMIINCKA  384 (413)
Q Consensus       363 ~l~~~ll~~a~~Le~l~i~~~~  384 (413)
                      .+...+....+.|+++.+....
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHhccCCccceeeEcCCCC
Confidence            4455555556788888887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.38  E-value=3.9e-08  Score=88.98  Aligned_cols=64  Identities=19%  Similarity=0.153  Sum_probs=30.5

Q ss_pred             ccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          129 IYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       129 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      +..+++|++|+|.+|.....++ ....+++|++|+|.++.++.- ....+..++.|+.|.+.+|..
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l  145 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQL  145 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCcc
Confidence            3445555555555554444432 134455555555555544210 112234455555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.37  E-value=4.5e-07  Score=88.40  Aligned_cols=179  Identities=14%  Similarity=0.065  Sum_probs=87.0

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.|+++...-..  +|  +..+++|++|+|.+|.+...+  ...+++|++|++.+..++.-  .  +..++.|++|.
T Consensus        64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEE
Confidence            455555555332111  22  334455555555555444432  44555566666655554221  1  44555566666


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeec
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISY  267 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~  267 (413)
                      +.++.. ..+.   .-..++|+.|.+.     ++......  -....++|+.|+++++......+..+++|+.+.+... 
T Consensus       134 l~~N~l-~~l~---l~~l~~L~~L~l~-----~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N-  201 (457)
T 3bz5_A          134 CARNTL-TEID---VSHNTQLTELDCH-----LNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN-  201 (457)
T ss_dssp             CTTSCC-SCCC---CTTCTTCCEEECT-----TCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSS-
T ss_pred             CCCCcc-ceec---cccCCcCCEEECC-----CCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCC-
Confidence            555544 1111   0123456666665     55322111  1113456666666665443334555666665544220 


Q ss_pred             ceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          268 AEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       268 ~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                              ......+..+++|+.|+++.+....  ++  +..+|+|+.|.+..
T Consensus       202 --------~l~~~~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          202 --------NITKLDLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             --------CCSCCCCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCS
T ss_pred             --------cCCeeccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeC
Confidence                    0001123456677777777654331  22  56778888888776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.37  E-value=3.8e-07  Score=90.98  Aligned_cols=103  Identities=12%  Similarity=0.184  Sum_probs=54.0

Q ss_pred             CCcEEEEEEECcceeeecCcccc-ccccccEEEeCCcccccc----CCCcccCCcccEEEeeeeEeCh-hhHHHHhccCC
Q 046658          108 QSVRELQLYLGQQNRVQLLETIY-TSTTLEVLKLDSDCVINA----PCVGTCFPTMKVLHMQLQNLDN-SLTEKMFSACP  181 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp  181 (413)
                      ..++.+++....  ...+|..++ .+++|++|+|.+|...+.    +.....+++|++|+|.++.++. ......+..++
T Consensus       310 ~~L~~L~l~~n~--l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          310 EKVKRITVENSK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             TTCCEEEEESSC--CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             ccceEEEeccCc--cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            345555555433  234555543 466677777766654321    1123456677777777666622 22234456667


Q ss_pred             ccceEEEEeeecCCCCcceEEEecCccceeEEE
Q 046658          182 CLEELSVHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       182 ~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      .|++|++.+|.. ..+.. .....++|+.|.+.
T Consensus       388 ~L~~L~Ls~N~l-~~lp~-~~~~~~~L~~L~Ls  418 (549)
T 2z81_A          388 NLTSLDISRNTF-HPMPD-SCQWPEKMRFLNLS  418 (549)
T ss_dssp             TCCEEECTTCCC-CCCCS-CCCCCTTCCEEECT
T ss_pred             CCCEEECCCCCC-ccCCh-hhcccccccEEECC
Confidence            777777766655 22222 11123566666666

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.36  E-value=7.3e-07  Score=84.95  Aligned_cols=193  Identities=15%  Similarity=0.111  Sum_probs=95.9

Q ss_pred             CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.|++....-  ..+| ..+..+++|++|+|.++.....|.. ...+++|++|+|.+..+..- ....+..++.|++
T Consensus        93 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  169 (390)
T 3o6n_A           93 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN  169 (390)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCE
T ss_pred             CCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCE
Confidence            4667776664432  2233 3345567777777777766555533 35677777777776655221 1223455677777


Q ss_pred             EEEEeeecCCCCc--c-----eEE---------EecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-
Q 046658          186 LSVHAYFDADDSR--T-----NFI---------IASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-  248 (413)
Q Consensus       186 L~l~~~~~~~~~~--~-----~~~---------i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-  248 (413)
                      |.+.++.. ....  .     .+.         ...++|+.|.+.     ++....   .-....++|+.|++.++... 
T Consensus       170 L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~-----~n~l~~---~~~~~~~~L~~L~l~~n~l~~  240 (390)
T 3o6n_A          170 LQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS-----HNSINV---VRGPVNVELTILKLQHNNLTD  240 (390)
T ss_dssp             EECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECC-----SSCCCE---EECCCCSSCCEEECCSSCCCC
T ss_pred             EECCCCcC-CccccccccccceeecccccccccCCCCcceEEECC-----CCeeee---ccccccccccEEECCCCCCcc
Confidence            77766654 1110  0     000         112345555555     443321   00011345666666664332 


Q ss_pred             eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          249 SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       249 ~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      ...+..+++|+.+++....  +.-..    ...+..+++|++|.+..+...  .+......+|+|+.|.+..
T Consensus       241 ~~~l~~l~~L~~L~Ls~n~--l~~~~----~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          241 TAWLLNYPGLVEVDLSYNE--LEKIM----YHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             CGGGGGCTTCSEEECCSSC--CCEEE----SGGGTTCSSCCEEECCSSCCC--EEECSSSCCTTCCEEECCS
T ss_pred             cHHHcCCCCccEEECCCCc--CCCcC----hhHccccccCCEEECCCCcCc--ccCcccCCCCCCCEEECCC
Confidence            2335566667666553210  00000    112335567777777665432  1222235667777777766

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.34  E-value=1.5e-07  Score=80.75  Aligned_cols=58  Identities=17%  Similarity=0.051  Sum_probs=33.0

Q ss_pred             cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      +++|++|++.++.+.+.| ....+++|++|++.++.+..-  . .+..+|.|++|.+.+|..
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l  100 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDV  100 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCcc
Confidence            456666666666555555 455666666666666644211  1 344566666666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.33  E-value=2.6e-07  Score=85.99  Aligned_cols=192  Identities=13%  Similarity=0.115  Sum_probs=115.9

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.|++....- ....|..+..+++|++|+|.++.....|.  ..+++|++|++.++.++.- ....+..++.|+.|.
T Consensus        76 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           76 KNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCSBCCS--SCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEE
T ss_pred             CCCCEEECCCCcC-CeeCHHHhcCCCCCCEEECCCCcCCccCh--hhcccccEEECCCCccccc-CHhHhcCCccccEEE
Confidence            5677777765432 11225566677888888888876666552  2247888888887766322 234467788899998


Q ss_pred             EEeeecCCC--C-cceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEE
Q 046658          188 VHAYFDADD--S-RTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEA  261 (413)
Q Consensus       188 l~~~~~~~~--~-~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~  261 (413)
                      +.++.. ..  . .. .....++|+.|.+.     ++....-...+   .++|++|++.++....   ..+..+++|+.+
T Consensus       152 l~~n~l-~~~~~~~~-~~~~l~~L~~L~l~-----~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          152 LGTNPL-KSSGIENG-AFQGMKKLSYIRIA-----DTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             CCSSCC-CGGGBCTT-GGGGCTTCCEEECC-----SSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             CCCCcC-CccCcChh-hccCCCCcCEEECC-----CCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            888765 11  0 00 01134678888888     76543211111   2788888888755432   245677788877


Q ss_pred             EEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccc
Q 046658          262 VVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKE  321 (413)
Q Consensus       262 ~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~  321 (413)
                      ++....  +.-    .....+..+++|++|.+..+...  .++..+..+|+|+.|.+...
T Consensus       222 ~Ls~n~--l~~----~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          222 GLSFNS--ISA----VDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             ECCSSC--CCE----ECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSS
T ss_pred             ECCCCc--Cce----eChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCC
Confidence            663210  000    00112345678888888876533  33334677888998888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.33  E-value=2e-07  Score=94.16  Aligned_cols=126  Identities=19%  Similarity=0.235  Sum_probs=68.8

Q ss_pred             CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.|++....-  ..++ ..+..+++|++|+|.+|.+...++ .+.++++|++|+|.++.++. ....++..++.|+.
T Consensus        75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~  151 (597)
T 3oja_B           75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTT  151 (597)
T ss_dssp             CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCE
Confidence            5666666654432  2333 245566777777777776655553 34667777777777776531 11233466777777


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      |.+.+|.. ..+........++|+.|.+.     ++.....   -....|+|+.|++.++
T Consensus       152 L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~-----~N~l~~~---~~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          152 LSMSNNNL-ERIEDDTFQATTSLQNLQLS-----SNRLTHV---DLSLIPSLFHANVSYN  202 (597)
T ss_dssp             EECCSSCC-CBCCTTTTTTCTTCCEEECT-----TSCCSBC---CGGGCTTCSEEECCSS
T ss_pred             EEeeCCcC-CCCChhhhhcCCcCcEEECc-----CCCCCCc---ChhhhhhhhhhhcccC
Confidence            77777755 11110000123567777776     6543321   0112456666666653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.32  E-value=7.9e-07  Score=86.67  Aligned_cols=199  Identities=13%  Similarity=0.071  Sum_probs=120.9

Q ss_pred             CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCccc
Q 046658           80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMK  159 (413)
Q Consensus        80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~  159 (413)
                      +.++.+.+....-..   +    .......+++|+++...-..  +|  +..+++|++|++.++.....+  ...+++|+
T Consensus        64 ~~L~~L~Ls~n~l~~---~----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~  130 (457)
T 3bz5_A           64 TGLTKLICTSNNITT---L----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT  130 (457)
T ss_dssp             TTCSEEECCSSCCSC---C----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCC
T ss_pred             CCCCEEEccCCcCCe---E----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCC
Confidence            347777777543211   1    11123577888877544222  23  556788888888888666554  66788888


Q ss_pred             EEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEE-ecCccceeEEEeeecCCCCCCCCcceEEEecCcee
Q 046658          160 VLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFII-ASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQ  238 (413)
Q Consensus       160 ~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~  238 (413)
                      +|++.+..++.-.    +..++.|++|.+.+|..   ... +.+ ..++|+.|.+.     ++.... ..  ....++|+
T Consensus       131 ~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~---~~~-~~~~~l~~L~~L~ls-----~n~l~~-l~--l~~l~~L~  194 (457)
T 3bz5_A          131 YLNCARNTLTEID----VSHNTQLTELDCHLNKK---ITK-LDVTPQTQLTTLDCS-----FNKITE-LD--VSQNKLLN  194 (457)
T ss_dssp             EEECTTSCCSCCC----CTTCTTCCEEECTTCSC---CCC-CCCTTCTTCCEEECC-----SSCCCC-CC--CTTCTTCC
T ss_pred             EEECCCCccceec----cccCCcCCEEECCCCCc---ccc-cccccCCcCCEEECC-----CCccce-ec--cccCCCCC
Confidence            8888887774321    56788888888888854   222 111 23678888887     665432 11  22457788


Q ss_pred             EEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEe
Q 046658          239 CLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLV  318 (413)
Q Consensus       239 ~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i  318 (413)
                      .|++.++......+..+++|+.+++....         .....+..+++|+.|.+..+....  +.  +..+++|+.|.+
T Consensus       195 ~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~---------l~~ip~~~l~~L~~L~l~~N~l~~--~~--~~~l~~L~~L~l  261 (457)
T 3bz5_A          195 RLNCDTNNITKLDLNQNIQLTFLDCSSNK---------LTEIDVTPLTQLTYFDCSVNPLTE--LD--VSTLSKLTTLHC  261 (457)
T ss_dssp             EEECCSSCCSCCCCTTCTTCSEEECCSSC---------CSCCCCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEEC
T ss_pred             EEECcCCcCCeeccccCCCCCEEECcCCc---------ccccCccccCCCCEEEeeCCcCCC--cC--HHHCCCCCEEec
Confidence            88888766555567777888877663210         000113356678888887765331  11  456778887776


Q ss_pred             cc
Q 046658          319 DK  320 (413)
Q Consensus       319 ~~  320 (413)
                      ..
T Consensus       262 ~~  263 (457)
T 3bz5_A          262 IQ  263 (457)
T ss_dssp             TT
T ss_pred             cC
Confidence            55

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.32  E-value=9.2e-08  Score=96.71  Aligned_cols=240  Identities=15%  Similarity=0.168  Sum_probs=150.9

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCcccccc---CCCcccCCcccEEEeeeeEeChhhHHHHhccCCcc
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINA---PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCL  183 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  183 (413)
                      ..++.|++..... ...+|. .+..+++|++|++.++.....   +.....+++|++|++.++.+... ....+..++.|
T Consensus       325 ~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  402 (606)
T 3t6q_A          325 PSLTHLSIKGNTK-RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQL  402 (606)
T ss_dssp             TTCSEEECCSCSS-CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTC
T ss_pred             CcCCEEECCCCCc-ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccC
Confidence            6788888876542 224444 366789999999999866544   33567899999999998866221 23345778999


Q ss_pred             ceEEEEeeecC-CCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce------eeeecCC
Q 046658          184 EELSVHAYFDA-DDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS------YVLEEMH  256 (413)
Q Consensus       184 e~L~l~~~~~~-~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~------~~~~~~~  256 (413)
                      ++|.+.+|... ..... .....++|+.|.+.     +|.............|+|++|+++++....      ..+..++
T Consensus       403 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~  476 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLS-----HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG  476 (606)
T ss_dssp             SEEECTTCCEECCTTCC-TTTTCTTCCEEECT-----TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred             CeEECCCCcCCCcccch-hhhCcccCCEEECC-----CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC
Confidence            99999988761 11111 01134789999998     876543212222347899999999865532      3467788


Q ss_pred             CceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCcccc
Q 046658          257 CLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIES  336 (413)
Q Consensus       257 ~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~  336 (413)
                      +|+.+++...  .+.    ......+..+++|++|+++.+... ...+..+..+++| .|.+.....+..        .+
T Consensus       477 ~L~~L~Ls~n--~l~----~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L-~L~L~~N~l~~~--------~~  540 (606)
T 3t6q_A          477 RLEILVLSFC--DLS----SIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGI-YLNLASNHISII--------LP  540 (606)
T ss_dssp             TCCEEECTTS--CCC----EECTTTTTTCTTCCEEECCSSCCC-GGGGGGGTTCCSC-EEECCSSCCCCC--------CG
T ss_pred             CccEEECCCC--ccC----ccChhhhccccCCCEEECCCCccC-cCChhHhCccccc-EEECcCCccccc--------CH
Confidence            9988776321  010    010123556788999999876533 2234556778888 888776322211        00


Q ss_pred             CccCcccccceeEEEEEe--ecCCHhHHHHHHHHHhcCC
Q 046658          337 DCVPQCLLQRVKKIEIIR--VQGDEDEQRVIEYFLQQCK  373 (413)
Q Consensus       337 ~~~~~c~~~~L~~v~i~~--~~~~~~~~~l~~~ll~~a~  373 (413)
                      ....  ...+|+.+.+.+  +.+.+....++.++-++..
T Consensus       541 ~~~~--~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~  577 (606)
T 3t6q_A          541 SLLP--ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQ  577 (606)
T ss_dssp             GGHH--HHHTSSEEECTTCCEECSGGGHHHHHHHHHCGG
T ss_pred             hhcc--cCCCCCEEeCCCCCccccCCcHHHHHHHHhCcc
Confidence            1111  126788888764  4577777888887776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.31  E-value=8.5e-09  Score=100.64  Aligned_cols=277  Identities=15%  Similarity=0.124  Sum_probs=143.0

Q ss_pred             CcceEEeeecCCCCcccHHHHHHHHH-hCCcEEEEEEECccee---eecCcccc-ccccccEEEeCCcccccc-----CC
Q 046658           81 NIDSFCLHCSRPIDLSSVNFWLSSAL-MQSVRELQLYLGQQNR---VQLLETIY-TSTTLEVLKLDSDCVINA-----PC  150 (413)
Q Consensus        81 ~l~~l~l~~~~~~~~~~~~~wl~~a~-~~~v~~L~l~~~~~~~---~~lp~~~~-~~~~L~~L~L~~~~~~~~-----~~  150 (413)
                      .++.+.+.... .............. ...+++|+++...-..   ..+...+. ..++|++|+|.+|...+.     +.
T Consensus       143 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  221 (461)
T 1z7x_W          143 RLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  221 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             cceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence            48898887653 33222222222211 3689999988544211   12222222 235899999998865442     21


Q ss_pred             CcccCCcccEEEeeeeEeChhhHHHH----hccCCccceEEEEeeecCCC-----CcceEEEecCccceeEEEeeecCCC
Q 046658          151 VGTCFPTMKVLHMQLQNLDNSLTEKM----FSACPCLEELSVHAYFDADD-----SRTNFIIASSTLKHFTLTVVIDTDN  221 (413)
Q Consensus       151 ~~~~~~~L~~L~L~~~~~~~~~l~~l----~~~cp~Le~L~l~~~~~~~~-----~~~~~~i~~~~L~~L~i~~~~~~~~  221 (413)
                      ....+++|++|+|.++.+++..+..+    ...++.|++|.+.+|.. .+     +.. .....++|++|.+.     ++
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~-~l~~~~~L~~L~Ls-----~n  294 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCR-VLRAKESLKELSLA-----GN  294 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHH-HHHHCTTCCEEECT-----TC
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHHHHHHHH-HHhhCCCcceEECC-----CC
Confidence            34468999999999988865554433    34689999999998866 21     111 11125789999998     77


Q ss_pred             CCCCCcceEE-----EecCceeEEEEeecccce-------eeeecCCCceEEEEEeecceeEEEecccCc----ccCC-C
Q 046658          222 HFSEIDHTVM-----LKAPNLQCLHIIADRLGS-------YVLEEMHCLHEAVVHISYAEWSQAVDQCYD----NFCP-S  284 (413)
Q Consensus       222 ~~~~~~~~~~-----~~~P~L~~L~~~~~~~~~-------~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~----~~~p-~  284 (413)
                      ..........     ...|+|++|++.++....       ..+...++|+.+++....      +.....    ..++ .
T Consensus       295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~------i~~~~~~~l~~~l~~~  368 (461)
T 1z7x_W          295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR------LEDAGVRELCQGLGQP  368 (461)
T ss_dssp             CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB------CHHHHHHHHHHHHTST
T ss_pred             CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc------cccccHHHHHHHHcCC
Confidence            5431100000     012689999998864421       123345666665553210      000000    0011 1


Q ss_pred             CCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCCHhH
Q 046658          285 FSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGDEDE  361 (413)
Q Consensus       285 ~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~~~~  361 (413)
                      .++|++|.+..+...   ...++..+..+|+|+.|.+.....+..+...  ..  ...+. ...+|+.+.+.+.......
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~--l~--~~l~~-~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ--LV--ESVRQ-PGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH--HH--HHHTS-TTCCCCEEECTTCCCCHHH
T ss_pred             CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHH--HH--HHhcc-CCcchhheeecccccCHHH
Confidence            346777776665543   2345555666777777776653222111000  00  00000 0124566665555554444


Q ss_pred             HHHHHHHHhcCCCCc
Q 046658          362 QRVIEYFLQQCKCLE  376 (413)
Q Consensus       362 ~~l~~~ll~~a~~Le  376 (413)
                      .+.++.+.+.-|.|+
T Consensus       444 ~~~l~~l~~~~p~l~  458 (461)
T 1z7x_W          444 EDRLQALEKDKPSLR  458 (461)
T ss_dssp             HHHHHHHHHHCTTSE
T ss_pred             HHHHHHHhccCCCcE
Confidence            445555555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.31  E-value=1.5e-07  Score=98.48  Aligned_cols=189  Identities=11%  Similarity=0.096  Sum_probs=110.4

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCcc-ccc--cCCCc-------ccCCcccEEEeeeeEeChhhHHH--
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDC-VIN--APCVG-------TCFPTMKVLHMQLQNLDNSLTEK--  175 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~-~~~--~~~~~-------~~~~~L~~L~L~~~~~~~~~l~~--  175 (413)
                      .+++.|+++.+.- ...+|..+..+++|++|+|.+|. +..  .|...       ..+++|++|+|.++.+.  .+..  
T Consensus       491 ~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~  567 (876)
T 4ecn_A          491 KDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASA  567 (876)
T ss_dssp             TTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHH
T ss_pred             CCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChh
Confidence            5688888876542 34567777788888888888875 332  33212       24558888888887775  3444  


Q ss_pred             HhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCc-eeEEEEeeccccee--ee
Q 046658          176 MFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPN-LQCLHIIADRLGSY--VL  252 (413)
Q Consensus       176 l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~-L~~L~~~~~~~~~~--~~  252 (413)
                      .+..++.|+.|.+.+|.. ..+.. + ...++|+.|.+.     ++.... ........++ |+.|+++++....+  .+
T Consensus       568 ~l~~L~~L~~L~Ls~N~l-~~lp~-~-~~L~~L~~L~Ls-----~N~l~~-lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~  638 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKV-RHLEA-F-GTNVKLTDLKLD-----YNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIF  638 (876)
T ss_dssp             HHTTCTTCCEEECTTSCC-CBCCC-C-CTTSEESEEECC-----SSCCSC-CCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred             hhhcCCCCCEEECCCCCc-ccchh-h-cCCCcceEEECc-----CCcccc-chHHHhhccccCCEEECcCCCCCcCchhh
Confidence            567788888888888776 22221 1 123678888887     665431 1112234566 88888887544311  11


Q ss_pred             ecC--CCceEEEEEeecceeEEEecccCc-ccCC---------CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          253 EEM--HCLHEAVVHISYAEWSQAVDQCYD-NFCP---------SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       253 ~~~--~~L~~~~i~~~~~~l~l~~~~~~~-~~~p---------~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      ...  ++|+.+.+..           ... ...|         ...+|+.|.+..+... ..-..++..+|+|+.|.+..
T Consensus       639 ~~~~~~~L~~L~Ls~-----------N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          639 NAKSVYVMGSVDFSY-----------NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             CTTCSSCEEEEECCS-----------SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred             hccccCCCCEEECcC-----------CcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence            222  2255554422           100 1112         2237888888776543 11233456788888888776

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.29  E-value=9.5e-07  Score=89.18  Aligned_cols=83  Identities=19%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.|++....  ...+|+ .+..+++|++|+|.+|.+...|+. +.++++|++|+|.++.+..- ....+..++.|+.
T Consensus        99 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  175 (597)
T 3oja_B           99 HTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN  175 (597)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCc--CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcE
Confidence            456666666443  223333 334566777777777665555533 35667777777776655221 1123455666666


Q ss_pred             EEEEeeec
Q 046658          186 LSVHAYFD  193 (413)
Q Consensus       186 L~l~~~~~  193 (413)
                      |.+.+|..
T Consensus       176 L~L~~N~l  183 (597)
T 3oja_B          176 LQLSSNRL  183 (597)
T ss_dssp             EECTTSCC
T ss_pred             EECcCCCC
Confidence            66666544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.29  E-value=1.6e-07  Score=85.00  Aligned_cols=200  Identities=17%  Similarity=0.148  Sum_probs=102.2

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .++++|+++...  ...++. .+..+++|++|+|.++.....+. ....+++|++|+|.+..++.-. ...+..++.|++
T Consensus        28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCE
T ss_pred             CCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccE
Confidence            356666655333  223333 45556778888887776555543 3556777888888777652211 123456777888


Q ss_pred             EEEEeeecCCCCcceEEE-ecCccceeEEEeeecCCCCCCCC-cceEEEecCceeEEEEeeccccee---eeecCCCceE
Q 046658          186 LSVHAYFDADDSRTNFII-ASSTLKHFTLTVVIDTDNHFSEI-DHTVMLKAPNLQCLHIIADRLGSY---VLEEMHCLHE  260 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~-~~~~~~~~P~L~~L~~~~~~~~~~---~~~~~~~L~~  260 (413)
                      |.+.++.. ..+.. ..+ ..++|+.|.+.     ++..... ........++|++|+++++.....   .+..+++|+.
T Consensus       105 L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~-----~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A          105 LVAVETNL-ASLEN-FPIGHLKTLKELNVA-----HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             EECTTSCC-CCSTT-CCCTTCTTCCEEECC-----SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             EECCCCCc-cccCc-hhcccCCCCCEEECc-----CCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence            88777765 22222 111 23677777777     6543320 011122346777777777543221   1222233321


Q ss_pred             EEEEeecceeEEEecccCccc----CCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecccccee
Q 046658          261 AVVHISYAEWSQAVDQCYDNF----CPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFE  325 (413)
Q Consensus       261 ~~i~~~~~~l~l~~~~~~~~~----~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~  325 (413)
                      +.+       .+.++......    .....+|++|.+..+... .....++..+++|+.|.+...++..
T Consensus       178 l~l-------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          178 LNL-------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCE-------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cce-------eeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccc
Confidence            110       11111111000    112236888888765532 1112345678888888887754443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.27  E-value=1.9e-07  Score=80.06  Aligned_cols=81  Identities=12%  Similarity=0.069  Sum_probs=44.0

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.+++....-  ..+| .+..+++|++|.+.+|.....+ ....+++|++|++.++.+++.... .+..+|.|+.|.
T Consensus        44 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEE
T ss_pred             CCccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEE
Confidence            4556666654332  2334 3455666666666666443333 455566666666666655332221 234566666666


Q ss_pred             EEeeec
Q 046658          188 VHAYFD  193 (413)
Q Consensus       188 l~~~~~  193 (413)
                      +.+|..
T Consensus       119 Ls~n~i  124 (197)
T 4ezg_A          119 ISHSAH  124 (197)
T ss_dssp             CCSSBC
T ss_pred             ecCCcc
Confidence            666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.24  E-value=2e-07  Score=85.25  Aligned_cols=14  Identities=7%  Similarity=0.256  Sum_probs=6.1

Q ss_pred             cCCcccEEEeeeeE
Q 046658          154 CFPTMKVLHMQLQN  167 (413)
Q Consensus       154 ~~~~L~~L~L~~~~  167 (413)
                      .+++|++|+|.+..
T Consensus        53 ~l~~L~~L~L~~n~   66 (290)
T 1p9a_G           53 PYTRLTQLNLDRAE   66 (290)
T ss_dssp             TCTTCCEEECTTSC
T ss_pred             cCCCCCEEECCCCc
Confidence            34444444444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.24  E-value=2.6e-08  Score=94.16  Aligned_cols=93  Identities=13%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             CCeeEEEEEeCCCC---hhhHHHHHhc-CCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeec---CC
Q 046658          286 SELTFLEVKLAGSG---WRVLPIILHS-SPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQ---GD  358 (413)
Q Consensus       286 ~~L~~L~l~~~~~~---~~~l~~ll~~-~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~---~~  358 (413)
                      .+|++|+++.+...   ...+...+.. +++|+.|.+.....+..+...-  .  ....  ...+|+.+.+.+-.   -.
T Consensus       196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~--~~~~--~l~~L~~L~L~~n~l~~i~  269 (362)
T 3goz_A          196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL--K--LLKD--SLKHLQTVYLDYDIVKNMS  269 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH--H--HTTT--TTTTCSEEEEEHHHHTTCC
T ss_pred             CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH--H--HHHh--cCCCccEEEeccCCccccC
Confidence            48999999887643   3446666666 5699999998743322211000  0  0001  12679999887654   22


Q ss_pred             HhHHHHHHHHHhcCCCCceEEEEeec
Q 046658          359 EDEQRVIEYFLQQCKCLEVMIINCKA  384 (413)
Q Consensus       359 ~~~~~l~~~ll~~a~~Le~l~i~~~~  384 (413)
                      ...+..+..-+.+.+.|+.+.+..+.
T Consensus       270 ~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          270 KEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHHHHHHhccCCceEEEecCCCc
Confidence            22233333333444445555554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.23  E-value=6.5e-07  Score=83.23  Aligned_cols=219  Identities=12%  Similarity=0.074  Sum_probs=138.1

Q ss_pred             CCcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcc
Q 046658           80 GNIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTM  158 (413)
Q Consensus        80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L  158 (413)
                      +.++.+.+....-...  ....+  ....+++.|+++...-  ..+|..++  ++|++|++.++.....+. ...++++|
T Consensus        76 ~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l--~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           76 KNLHTLILINNKISKI--SPGAF--APLVKLERLYLSKNQL--KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM  147 (330)
T ss_dssp             TTCCEEECCSSCCCCB--CTTTT--TTCTTCCEEECCSSCC--SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             CCCCEEECCCCcCCee--CHHHh--cCCCCCCEEECCCCcC--CccChhhc--ccccEEECCCCcccccCHhHhcCCccc
Confidence            3578888875432110  00111  1135789999876542  35676655  799999999987766653 35679999


Q ss_pred             cEEEeeeeEeC-hhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCce
Q 046658          159 KVLHMQLQNLD-NSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNL  237 (413)
Q Consensus       159 ~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L  237 (413)
                      ++|++.+..++ .......+..++.|++|.+.++.. ..+..   ...++|+.|.+.     ++.............++|
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~---~~~~~L~~L~l~-----~n~l~~~~~~~~~~l~~L  218 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ---GLPPSLTELHLD-----GNKITKVDAASLKGLNNL  218 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCS---SCCTTCSEEECT-----TSCCCEECTGGGTTCTTC
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCc---cccccCCEEECC-----CCcCCccCHHHhcCCCCC
Confidence            99999998874 333455678899999999999877 33332   123789999998     776432111112246899


Q ss_pred             eEEEEeeccccee---eeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC---hhhHH--HHHhc
Q 046658          238 QCLHIIADRLGSY---VLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG---WRVLP--IILHS  309 (413)
Q Consensus       238 ~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~--~ll~~  309 (413)
                      ++|+++++.....   .+..+++|+.+++....  +.    .. ...+..+++|++|.+..+...   ...+.  .....
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~----~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~  291 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNK--LV----KV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  291 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSC--CS----SC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCc--Cc----cC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence            9999998655422   46778899887774311  00    00 112346788999999887643   11111  11223


Q ss_pred             CCCCceEEecccc
Q 046658          310 SPNLERLLVDKEC  322 (413)
Q Consensus       310 ~p~L~~L~i~~~~  322 (413)
                      .+.|+.|.+.+.+
T Consensus       292 ~~~l~~l~l~~N~  304 (330)
T 1xku_A          292 KASYSGVSLFSNP  304 (330)
T ss_dssp             SCCCSEEECCSSS
T ss_pred             cccccceEeecCc
Confidence            5788899887743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.23  E-value=8.2e-08  Score=91.47  Aligned_cols=177  Identities=11%  Similarity=0.097  Sum_probs=107.4

Q ss_pred             CCcceEEeeecCCCCcccHHHHHHHHH--hCCcEEEEEEECcc--eeeecCcc-------ccccccccEEEeCCccccc-
Q 046658           80 GNIDSFCLHCSRPIDLSSVNFWLSSAL--MQSVRELQLYLGQQ--NRVQLLET-------IYTSTTLEVLKLDSDCVIN-  147 (413)
Q Consensus        80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~--~~~v~~L~l~~~~~--~~~~lp~~-------~~~~~~L~~L~L~~~~~~~-  147 (413)
                      +.++.+.+.... .... ....+..+.  .++++.|+++....  -...+|..       +..+++|++|+|++|.+.+ 
T Consensus        32 ~~L~~L~L~~n~-i~~~-~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           32 DSVKEIVLSGNT-IGTE-AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             SCCCEEECTTSE-ECHH-HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCccEEECCCCC-CCHH-HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            348888887542 2211 122232222  36899999885421  11123333       3678999999999987654 


Q ss_pred             ----cCCCcccCCcccEEEeeeeEeCh---hhHHHHhccC---------CccceEEEEeeecC-CCCcce--EEEecCcc
Q 046658          148 ----APCVGTCFPTMKVLHMQLQNLDN---SLTEKMFSAC---------PCLEELSVHAYFDA-DDSRTN--FIIASSTL  208 (413)
Q Consensus       148 ----~~~~~~~~~~L~~L~L~~~~~~~---~~l~~l~~~c---------p~Le~L~l~~~~~~-~~~~~~--~~i~~~~L  208 (413)
                          ++.....+++|++|+|.++.+++   ..+...+..+         |.|++|.+.+|... ..+...  .....++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence                22245678999999999998843   3455555556         99999999999761 122210  01145799


Q ss_pred             ceeEEEeeecCCCCCCCC----cce-EEEecCceeEEEEeecccc-------eeeeecCCCceEEEE
Q 046658          209 KHFTLTVVIDTDNHFSEI----DHT-VMLKAPNLQCLHIIADRLG-------SYVLEEMHCLHEAVV  263 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~----~~~-~~~~~P~L~~L~~~~~~~~-------~~~~~~~~~L~~~~i  263 (413)
                      +.|.+.     +|.....    ... .....|+|++|+++++..+       ...+..+++|+.+.+
T Consensus       190 ~~L~L~-----~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          190 HTVKMV-----QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             CEEECC-----SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             CEEECc-----CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            999999     8865310    000 1224688999999886542       112445566665544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.21  E-value=5.2e-07  Score=91.82  Aligned_cols=195  Identities=13%  Similarity=0.179  Sum_probs=119.1

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCc-ccEEEeeeeEeChhhHHHHhcc--CCccc
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPT-MKVLHMQLQNLDNSLTEKMFSA--CPCLE  184 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~l~~l~~~--cp~Le  184 (413)
                      ..++.|+++...- ...+| .+..+++|++|.|.+|.....|.....+++ |++|+|.+..++  .+...+..  ++.|+
T Consensus       330 ~~L~~L~L~~N~l-~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~  405 (636)
T 4eco_A          330 KKLGMLECLYNQL-EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMS  405 (636)
T ss_dssp             TTCCEEECCSCCC-EEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEE
T ss_pred             CCCCEEeCcCCcC-ccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccC
Confidence            5788888875543 22566 667789999999999877777766788888 999999988774  23333433  34899


Q ss_pred             eEEEEeeecCCCCcceEE------EecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceee---e---
Q 046658          185 ELSVHAYFDADDSRTNFI------IASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYV---L---  252 (413)
Q Consensus       185 ~L~l~~~~~~~~~~~~~~------i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~---~---  252 (413)
                      .|.+.+|.........+.      ...++|+.|.+.     ++....-...+.-..++|++|+++++......   +   
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-----~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~  480 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-----NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE  480 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-----SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECc-----CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence            999998876111111010      134578888888     77654211111113578888888885443111   1   


Q ss_pred             ----ecCCCceEEEEEeecceeEEEecccCcccCC--CCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          253 ----EEMHCLHEAVVHISYAEWSQAVDQCYDNFCP--SFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       253 ----~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p--~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                          .++++|+.+++...  .++ .+    ...+.  .+++|++|.++.+...  .++.-+..+++|+.|.+..
T Consensus       481 ~~~~~~l~~L~~L~Ls~N--~l~-~l----p~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFN--KLT-KL----SDDFRATTLPYLVGIDLSYNSFS--KFPTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             TEECTTGGGCCEEECCSS--CCC-BC----CGGGSTTTCTTCCEEECCSSCCS--SCCCGGGGCSSCCEEECCS
T ss_pred             cccccccCCccEEECcCC--cCC-cc----ChhhhhccCCCcCEEECCCCCCC--CcChhhhcCCCCCEEECCC
Confidence                11226776655321  111 00    01122  5678888888776533  2444566788888888854

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.21  E-value=1.2e-06  Score=88.51  Aligned_cols=197  Identities=13%  Similarity=0.032  Sum_probs=109.1

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      ..+++|+++...-  ..++. .+..+++|++|+|.+|.....++ .+.++++|++|+|.++.+..- ....+.+++.|++
T Consensus        32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~  108 (606)
T 3vq2_A           32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLEN  108 (606)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCE
T ss_pred             CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCE
Confidence            4566666654432  23333 45567788888888776655533 456778888888877766221 1233566788888


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCC-CcceEEEecCceeEEEEeecccceee---eecCCCce--
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSE-IDHTVMLKAPNLQCLHIIADRLGSYV---LEEMHCLH--  259 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~-~~~~~~~~~P~L~~L~~~~~~~~~~~---~~~~~~L~--  259 (413)
                      |.+.+|.. ..+........++|+.|.+.     ++.... .........++|++|+++++......   +..+.+|+  
T Consensus       109 L~L~~n~l-~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~  182 (606)
T 3vq2_A          109 LVAVETKL-ASLESFPIGQLITLKKLNVA-----HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV  182 (606)
T ss_dssp             EECTTSCC-CCSSSSCCTTCTTCCEEECC-----SSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred             EEccCCcc-ccccccccCCCCCCCEEeCC-----CCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence            88877765 22221011134677788777     665432 11112224577777777775332221   11111121  


Q ss_pred             --EEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          260 --EAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       260 --~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                        .+.+  ..+.+.-    .....+.. .+|++|.+..+.......+..+..+++|+.+.+..
T Consensus       183 l~~L~l--~~n~l~~----~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~  238 (606)
T 3vq2_A          183 NLSLDM--SLNPIDF----IQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL  238 (606)
T ss_dssp             CCEEEC--TTCCCCE----ECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cceeec--cCCCcce----eCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence              2222  1111100    00111222 37999999987766677888899999999988754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.21  E-value=7.8e-07  Score=92.55  Aligned_cols=182  Identities=16%  Similarity=0.118  Sum_probs=97.2

Q ss_pred             eeecCccccccccccEEEeCCccccc-cCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCc
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVIN-APC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSR  198 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~  198 (413)
                      ...+|..+..+++|++|+|++|.+.+ .|.  ....+++|++|+|.++.+.......++..++.|++|++.+|.. .+..
T Consensus        89 ~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~  167 (768)
T 3rgz_A           89 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGAN  167 (768)
T ss_dssp             EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC-EEET
T ss_pred             cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc-CCcC
Confidence            34456666677777777777765542 232  4556777777777776663222223335667777777777655 1000


Q ss_pred             ceE---EEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc--eeeeecCCCceEEEEEeecceeEEE
Q 046658          199 TNF---IIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG--SYVLEEMHCLHEAVVHISYAEWSQA  273 (413)
Q Consensus       199 ~~~---~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~--~~~~~~~~~L~~~~i~~~~~~l~l~  273 (413)
                      ...   .-..++|+.|.+.     ++....... . ...++|++|+++++...  ...+.++++|+.+++....      
T Consensus       168 ~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~------  234 (768)
T 3rgz_A          168 VVGWVLSDGCGELKHLAIS-----GNKISGDVD-V-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK------  234 (768)
T ss_dssp             HHHHHHTTCCTTCCEEECC-----SSEEESCCB-C-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC------
T ss_pred             ChhhhhhccCCCCCEEECC-----CCcccccCC-c-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc------
Confidence            000   1123567777777     654332111 1 34577777777775442  2226667777766553210      


Q ss_pred             ecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          274 VDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       274 ~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      +.......+..+++|++|.+..+.... .++..  .+++|+.|.+..
T Consensus       235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~--~l~~L~~L~L~~  278 (768)
T 3rgz_A          235 LSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAE  278 (768)
T ss_dssp             CCSCHHHHTTTCSSCCEEECCSSCCEE-SCCCC--CCTTCCEEECCS
T ss_pred             CCCcccHHHhcCCCCCEEECCCCcccC-ccCcc--ccCCCCEEECcC
Confidence            000001123456677777777664320 01111  677888887766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.19  E-value=2.2e-07  Score=77.46  Aligned_cols=129  Identities=20%  Similarity=0.176  Sum_probs=72.5

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .++++|++....-....+|..+..+++|++|+|.+|.....+ ....+++|++|+|.++.+... +..++..+|.|+.|.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCS-SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChh-hhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEe
Confidence            345666665443221245666666777888888777655552 566677788888877776332 455556677888888


Q ss_pred             EEeeecCCCCcce-EEEecCccceeEEEeeecCCCCCCCCcc---eEEEecCceeEEEEee
Q 046658          188 VHAYFDADDSRTN-FIIASSTLKHFTLTVVIDTDNHFSEIDH---TVMLKAPNLQCLHIIA  244 (413)
Q Consensus       188 l~~~~~~~~~~~~-~~i~~~~L~~L~i~~~~~~~~~~~~~~~---~~~~~~P~L~~L~~~~  244 (413)
                      +.+|.. .++... .....++|+.|.+.     ++.......   ......|+|++|++.+
T Consensus       102 Ls~N~l-~~~~~~~~l~~l~~L~~L~l~-----~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          102 LSGNKL-KDISTLEPLKKLECLKSLDLF-----NCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             CBSSSC-CSSGGGGGGSSCSCCCEEECC-----SSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             ccCCcc-CcchhHHHHhcCCCCCEEEee-----CCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            877765 322210 11123567777776     554332111   1122345666665555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.18  E-value=1.1e-06  Score=80.31  Aligned_cols=120  Identities=14%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      ..++.|.+....-  ..++ .+..+++|++|+|.+|...+.+ ....+++|++|+|.+..+++  +.. +..++.|+.|.
T Consensus        46 ~~L~~L~l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEE
T ss_pred             CcccEEEccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEE
Confidence            4566666554332  2233 2455677777777777665555 36667777777777776632  111 56677777777


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEee
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~  244 (413)
                      +.+|.. ..+.. + ...++|+.|.+.     ++....-  ......++|+.|++++
T Consensus       119 L~~n~i-~~~~~-l-~~l~~L~~L~l~-----~n~l~~~--~~l~~l~~L~~L~L~~  165 (291)
T 1h6t_A          119 LEHNGI-SDING-L-VHLPQLESLYLG-----NNKITDI--TVLSRLTKLDTLSLED  165 (291)
T ss_dssp             CTTSCC-CCCGG-G-GGCTTCCEEECC-----SSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CCCCcC-CCChh-h-cCCCCCCEEEcc-----CCcCCcc--hhhccCCCCCEEEccC
Confidence            777765 32322 1 123567777776     5543221  1111245555555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.18  E-value=3.8e-06  Score=84.75  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=25.6

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL  168 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~  168 (413)
                      .+++.|++..+.-  ..+|.   .+++|++|+|++|.+..+|.   .+++|++|+|.++.+
T Consensus        61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL  113 (622)
T ss_dssp             TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred             CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence            3455555554321  23333   23555556665555444441   455555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.17  E-value=5.1e-07  Score=81.47  Aligned_cols=180  Identities=17%  Similarity=0.170  Sum_probs=102.5

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .++++|+++...  ...+|. .+..+++|++|+|.++.....+.. +..+++|++|+|.+..+..- ....+..++.|++
T Consensus        37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCE
T ss_pred             CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCE
Confidence            456777776543  233443 456778999999998877666643 46789999999998877321 1244577899999


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEe
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHI  265 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~  265 (413)
                      |.+.++.. ..+........++|+.|.+.     ++....-.....-..++|+.|++.++......              
T Consensus       114 L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------  173 (270)
T 2o6q_A          114 LRLDRNQL-KSLPPRVFDSLTKLTYLSLG-----YNELQSLPKGVFDKLTSLKELRLYNNQLKRVP--------------  173 (270)
T ss_dssp             EECCSSCC-CCCCTTTTTTCTTCCEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------------
T ss_pred             EECCCCcc-CeeCHHHhCcCcCCCEEECC-----CCcCCccCHhHccCCcccceeEecCCcCcEeC--------------
Confidence            99988876 22211000124678888887     66433211111113466666666653221100              


Q ss_pred             ecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccce
Q 046658          266 SYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWF  324 (413)
Q Consensus       266 ~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~  324 (413)
                                   ...+..+++|++|.+..+... ......+..+++|+.|.+...++.
T Consensus       174 -------------~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          174 -------------EGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             -------------TTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -------------hhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence                         112334556666666655322 111123456777777777765443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.17  E-value=4.2e-07  Score=88.38  Aligned_cols=143  Identities=13%  Similarity=0.140  Sum_probs=83.8

Q ss_pred             CccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccccee---eeecCCCceEEEEEeecceeEEEecccCcccC
Q 046658          206 STLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSY---VLEEMHCLHEAVVHISYAEWSQAVDQCYDNFC  282 (413)
Q Consensus       206 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~---~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~  282 (413)
                      ++|+.|.+.     ++.............++|++|+++++.....   .+.++++|+.+++...  .+.    ......+
T Consensus       275 ~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~----~~~~~~~  343 (455)
T 3v47_A          275 SGVKTCDLS-----KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN--FLG----SIDSRMF  343 (455)
T ss_dssp             SCCCEEECC-----SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCC----EECGGGG
T ss_pred             cCceEEEec-----CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC--ccC----CcChhHh
Confidence            579999998     7754321111122468899999988655422   4667888888776431  110    0001234


Q ss_pred             CCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe--ecCCHh
Q 046658          283 PSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR--VQGDED  360 (413)
Q Consensus       283 p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~--~~~~~~  360 (413)
                      ..+++|++|.++.+... ...+..+..+|+|+.|.+.....+...        ......  ..+|+.+.+.+  +.+...
T Consensus       344 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~--l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          344 ENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVP--------DGIFDR--LTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC--------TTTTTT--CTTCCEEECCSSCBCCCTT
T ss_pred             cCcccCCEEECCCCccc-ccChhhccccccccEEECCCCccccCC--------HhHhcc--CCcccEEEccCCCcccCCC
Confidence            56788999999887543 112345678899999999873322110        011112  26788888875  446666


Q ss_pred             HHHHHHHHHh
Q 046658          361 EQRVIEYFLQ  370 (413)
Q Consensus       361 ~~~l~~~ll~  370 (413)
                      .+......+.
T Consensus       413 ~~~~l~~~l~  422 (455)
T 3v47_A          413 RIDYLSRWLN  422 (455)
T ss_dssp             TTHHHHHHHH
T ss_pred             cchHHHHHHH
Confidence            5665544444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.17  E-value=5.2e-07  Score=83.28  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=16.6

Q ss_pred             cccccEEEeCCccccc-cCCCc--ccCCcccEEEeeeeEe
Q 046658          132 STTLEVLKLDSDCVIN-APCVG--TCFPTMKVLHMQLQNL  168 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~-~~~~~--~~~~~L~~L~L~~~~~  168 (413)
                      .++|++|+|.++...+ .|...  ..+++|++|+|.+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  133 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW  133 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence            4455555555544332 22111  4455555555555444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.17  E-value=1.5e-07  Score=94.35  Aligned_cols=146  Identities=14%  Similarity=0.152  Sum_probs=90.1

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCcccccc---CCCcccCCcccEEEeeeeEeChhhHHHHhccCCcc
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINA---PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCL  183 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  183 (413)
                      ..+++.+.+..... ....+.  ..+++|++|++.+|.....   +....++++|++|++.++.+..-.- . +..|+.|
T Consensus       324 l~~L~~L~l~~n~~-~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~-~~~l~~L  398 (570)
T 2z63_A          324 LKSLKRLTFTSNKG-GNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-N-FLGLEQL  398 (570)
T ss_dssp             CSSCCEEEEESCBS-CCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-E-EETCTTC
T ss_pred             ccccCEEeCcCCcc-cccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-c-ccccCCC
Confidence            35788888886542 112222  5678999999998865543   2245678999999999887622111 1 6789999


Q ss_pred             ceEEEEeeecCCCCc-ceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc----eeeeecCCCc
Q 046658          184 EELSVHAYFDADDSR-TNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG----SYVLEEMHCL  258 (413)
Q Consensus       184 e~L~l~~~~~~~~~~-~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~----~~~~~~~~~L  258 (413)
                      +.|.+.+|....... . .....++|+.|.+.     +|..........-..|+|++|++.++...    ...+..+++|
T Consensus       399 ~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFS-VFLSLRNLIYLDIS-----HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             CEEECTTSEEESCTTSC-TTTTCTTCCEEECT-----TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CEEEccCCccccccchh-hhhcCCCCCEEeCc-----CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence            999999887611011 1 11234789999998     77643211111224689999999885331    1234445555


Q ss_pred             eEEEE
Q 046658          259 HEAVV  263 (413)
Q Consensus       259 ~~~~i  263 (413)
                      +.+++
T Consensus       473 ~~L~l  477 (570)
T 2z63_A          473 TFLDL  477 (570)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            55444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.17  E-value=2.7e-07  Score=85.94  Aligned_cols=194  Identities=11%  Similarity=0.066  Sum_probs=109.0

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.|++....- ....|..+..+++|++|+|.++.....|..  .+++|++|++.+..++.- ....+..++.|+.|.
T Consensus        78 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           78 QHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTCCEEECCSSCC-CEECGGGSTTCTTCCEEECCSSCCCSCCSS--CCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEE
T ss_pred             CCCcEEECCCCcc-CccCHhHhhCcCCCCEEECCCCcCCccCcc--ccccCCEEECCCCccCcc-CHhHhCCCccCCEEE
Confidence            4677777664432 112244556677888888877766555522  237788888877766311 123356778888888


Q ss_pred             EEeeecCC-CCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEEEE
Q 046658          188 VHAYFDAD-DSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEAVV  263 (413)
Q Consensus       188 l~~~~~~~-~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~~i  263 (413)
                      +.++.... .... ......+|+.|.+.     ++....-...   -.++|++|+++++....   ..+..+++|+.+++
T Consensus       154 l~~n~l~~~~~~~-~~~~~l~L~~L~l~-----~n~l~~l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          154 MGGNPLENSGFEP-GAFDGLKLNYLRIS-----EAKLTGIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             CCSCCCBGGGSCT-TSSCSCCCSCCBCC-----SSBCSSCCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             CCCCccccCCCCc-ccccCCccCEEECc-----CCCCCccCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            88775510 0100 00111267777777     6654321111   12678888887754432   23566677776655


Q ss_pred             EeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecccc
Q 046658          264 HISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKEC  322 (413)
Q Consensus       264 ~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  322 (413)
                      ....      +.......+..+++|++|.+..+...  .++..+..+|+|+.|.+....
T Consensus       225 ~~N~------l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          225 GHNQ------IRMIENGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CSSC------CCCCCTTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSC
T ss_pred             CCCc------CCcCChhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCC
Confidence            3210      00010112345678888888876543  333346788999999988743

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.17  E-value=2.5e-06  Score=75.29  Aligned_cols=34  Identities=9%  Similarity=-0.064  Sum_probs=20.8

Q ss_pred             CCeeEEEEEeCC-CChhhHHHHHhcC-CCCceEEecc
Q 046658          286 SELTFLEVKLAG-SGWRVLPIILHSS-PNLERLLVDK  320 (413)
Q Consensus       286 ~~L~~L~l~~~~-~~~~~l~~ll~~~-p~L~~L~i~~  320 (413)
                      .+|++|.+..+. .. ..-...+..+ ++|+.|.+..
T Consensus       179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTT
T ss_pred             CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCC
Confidence            467777776653 22 1112345567 8888888876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.15  E-value=2.4e-05  Score=78.18  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=27.1

Q ss_pred             CCCCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEecc
Q 046658          283 PSFSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       283 p~~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      ..+++|+.|.+..+... ...++..+..+++|+.|++..
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            35667788877776544 445666778888888888776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.15  E-value=8e-07  Score=89.53  Aligned_cols=121  Identities=15%  Similarity=0.163  Sum_probs=70.4

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.|.+....  ...+| .+..+++|+.|+|.+|.+...+ ....+++|+.|+|.++.+.+-  . -+..++.|+.|.
T Consensus        43 ~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           43 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS  115 (605)
T ss_dssp             TTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred             CCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence            455555554333  22233 3566777888888777666655 366777888888877766321  1 356677788888


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      |.+|.. ..+.. + ...++|+.|.+.     +|....-  ......++|+.|+++++
T Consensus       116 Ls~N~l-~~l~~-l-~~l~~L~~L~Ls-----~N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          116 LEHNGI-SDING-L-VHLPQLESLYLG-----NNKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             CTTSCC-CCCGG-G-GGCTTCSEEECC-----SSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             ecCCCC-CCCcc-c-cCCCccCEEECC-----CCccCCc--hhhcccCCCCEEECcCC
Confidence            777766 33322 1 134677777777     6654321  11113456666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.14  E-value=4.3e-06  Score=87.94  Aligned_cols=85  Identities=11%  Similarity=-0.004  Sum_probs=50.1

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccc-cCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVIN-APC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE  184 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  184 (413)
                      .+++.|+++...- ....|..+..+++|++|+|.+|...+ .+.  ....+++|++|+|+++.+........+..++.|+
T Consensus        73 ~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           73 PNLRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             TTCCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred             CCCCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence            4566666654332 12235556667777777777765543 221  2556777777777777664333334456677777


Q ss_pred             eEEEEeeec
Q 046658          185 ELSVHAYFD  193 (413)
Q Consensus       185 ~L~l~~~~~  193 (413)
                      +|.+.++..
T Consensus       152 ~L~Ls~N~i  160 (844)
T 3j0a_A          152 SIDFSSNQI  160 (844)
T ss_dssp             EEEEESSCC
T ss_pred             EEECCCCcC
Confidence            777777644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.14  E-value=5.5e-07  Score=83.01  Aligned_cols=216  Identities=13%  Similarity=0.079  Sum_probs=110.3

Q ss_pred             cceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccc--cccccccEEEeCCccccccCC-----Cccc
Q 046658           82 IDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETI--YTSTTLEVLKLDSDCVINAPC-----VGTC  154 (413)
Q Consensus        82 l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~~~-----~~~~  154 (413)
                      ++.+.+.-.. .....+...........+++|++....- ....|..+  ...++|++|+|.++......+     ....
T Consensus        66 l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           66 VRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             eeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            5666655322 3334455555555556788888875542 12334444  556788888888775543211     1235


Q ss_pred             CCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCC--CCc-ceEEEecCccceeEEEeeecCCCCCCCCcce--
Q 046658          155 FPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDAD--DSR-TNFIIASSTLKHFTLTVVIDTDNHFSEIDHT--  229 (413)
Q Consensus       155 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~--~~~-~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~--  229 (413)
                      +++|++|+|.++.+... ....+..++.|++|++.+|....  .+. .......++|+.|.+.     +|.... ...  
T Consensus       144 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls-----~N~l~~-l~~~~  216 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR-----NTGMET-PTGVC  216 (310)
T ss_dssp             CSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC-----SSCCCC-HHHHH
T ss_pred             ccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC-----CCCCCc-hHHHH
Confidence            77888888887766221 12334567888888888875300  000 0000134677888877     665421 011  


Q ss_pred             --EEEecCceeEEEEeeccccee---eeecC---CCceEEEEEeecceeEEEecccCcccCC--CCCCeeEEEEEeCCCC
Q 046658          230 --VMLKAPNLQCLHIIADRLGSY---VLEEM---HCLHEAVVHISYAEWSQAVDQCYDNFCP--SFSELTFLEVKLAGSG  299 (413)
Q Consensus       230 --~~~~~P~L~~L~~~~~~~~~~---~~~~~---~~L~~~~i~~~~~~l~l~~~~~~~~~~p--~~~~L~~L~l~~~~~~  299 (413)
                        +.-..++|++|+++++.....   .+..+   ++|+.+.+..           ..-..+|  .+++|++|+++.+...
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-----------N~l~~lp~~~~~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-----------AGLEQVPKGLPAKLRVLDLSSNRLN  285 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-----------SCCCSCCSCCCSCCSCEECCSCCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-----------CCCCchhhhhcCCCCEEECCCCcCC
Confidence              111347777777777544221   12222   4555544421           0001112  1246666666655432


Q ss_pred             hhhHHHHHhcCCCCceEEecc
Q 046658          300 WRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       300 ~~~l~~ll~~~p~L~~L~i~~  320 (413)
                        .++ .+..+|+|+.|.+.+
T Consensus       286 --~~~-~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          286 --RAP-QPDELPEVDNLTLDG  303 (310)
T ss_dssp             --SCC-CTTSCCCCSCEECSS
T ss_pred             --CCc-hhhhCCCccEEECcC
Confidence              111 135556666666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.12  E-value=3.4e-06  Score=83.44  Aligned_cols=128  Identities=13%  Similarity=0.122  Sum_probs=59.4

Q ss_pred             ecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEE
Q 046658          124 QLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFI  202 (413)
Q Consensus       124 ~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~  202 (413)
                      .+|..++  ++|++|+|++|.....++ ...++++|++|+|+++.++.- ....+..++.|++|++.++.. ..+.. . 
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~lp~-~-   87 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKL-VKISC-H-   87 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCC-CEEEC-C-
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCce-eecCc-c-
Confidence            3444433  556666666655444432 344556666666665554211 122344556666666666554 22222 1 


Q ss_pred             EecCccceeEEEeeecCCCCCCC-CcceEEEecCceeEEEEeecccceeeeecCCCc--eEEEE
Q 046658          203 IASSTLKHFTLTVVIDTDNHFSE-IDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCL--HEAVV  263 (413)
Q Consensus       203 i~~~~L~~L~i~~~~~~~~~~~~-~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L--~~~~i  263 (413)
                       ..++|++|.+.     ++.... .........++|++|+++++......+..+++|  +.+.+
T Consensus        88 -~l~~L~~L~L~-----~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           88 -PTVNLKHLDLS-----FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL  145 (520)
T ss_dssp             -CCCCCSEEECC-----SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEE
T ss_pred             -ccCCccEEecc-----CCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEe
Confidence             33556666665     544321 000111234556666666543333333444444  44444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.12  E-value=7.7e-07  Score=79.33  Aligned_cols=68  Identities=15%  Similarity=0.094  Sum_probs=41.2

Q ss_pred             eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ..+|..+.  ++|+.|+|.++.+...++ ....+++|++|+|.+..++.- ....+..++.|+.|.+.++..
T Consensus        27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCC
T ss_pred             cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcc
Confidence            34554433  467777777776655543 355677777777777666321 123345667777777777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.11  E-value=1.2e-07  Score=77.28  Aligned_cols=102  Identities=20%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658          109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV  188 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  188 (413)
                      ++++|+++...-....+|..+..+++|++|++.+|.....+ ....+++|++|+|.++.++.. +...+..+|.|+.|.+
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCT-TCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCch-hhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            45555555433211245665566777888888777655553 566677788888877776332 4555666777888877


Q ss_pred             EeeecCCCCc--ceEEEecCccceeEEE
Q 046658          189 HAYFDADDSR--TNFIIASSTLKHFTLT  214 (413)
Q Consensus       189 ~~~~~~~~~~--~~~~i~~~~L~~L~i~  214 (413)
                      .+|.. .++.  . .....++|+.|.+.
T Consensus        96 s~N~i-~~~~~~~-~~~~l~~L~~L~l~  121 (149)
T 2je0_A           96 SGNKI-KDLSTIE-PLKKLENLKSLDLF  121 (149)
T ss_dssp             TTSCC-CSHHHHG-GGGGCTTCCEEECT
T ss_pred             CCCcC-CChHHHH-HHhhCCCCCEEeCc
Confidence            77765 2221  1 11123566666666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.11  E-value=1.1e-06  Score=90.06  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=45.5

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccc-cCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVIN-APC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      ..++.+++....- ....|..+..+++|+.|+|.++.... .|+ ...++++|++|+|.++.+..- ....+..+|.|+.
T Consensus       381 ~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~  458 (680)
T 1ziw_A          381 SPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQR  458 (680)
T ss_dssp             SCCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC-CTTTTTTCTTCCE
T ss_pred             CcCceEECCCCCC-CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee-ChhhhhcCccccc
Confidence            4566776654332 11223445566778888887775532 231 455677777777776654111 0112345666666


Q ss_pred             EEEEeee
Q 046658          186 LSVHAYF  192 (413)
Q Consensus       186 L~l~~~~  192 (413)
                      |.+.++.
T Consensus       459 L~l~~n~  465 (680)
T 1ziw_A          459 LMLRRVA  465 (680)
T ss_dssp             EECTTSC
T ss_pred             chhcccc
Confidence            6666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.08  E-value=1.4e-06  Score=78.23  Aligned_cols=103  Identities=18%  Similarity=0.235  Sum_probs=72.2

Q ss_pred             ccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658          129 IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL  208 (413)
Q Consensus       129 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L  208 (413)
                      +..+++|++|++.++.....+ ....+++|++|+|.++.+++-.  . +..++.|+.|.+.+|.. ..+.. +  ..++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l-~~l~~-~--~~~~L  108 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRL-KNLNG-I--PSACL  108 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCC-SCCTT-C--CCSSC
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCcc-CCcCc-c--ccCcc
Confidence            345688999999998777776 6778899999999988873321  1 77889999999999887 43443 2  12788


Q ss_pred             ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecc
Q 046658          209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADR  246 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~  246 (413)
                      +.|.+.     ++....- . .....++|+.|+++++.
T Consensus       109 ~~L~L~-----~N~l~~~-~-~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A          109 SRLFLD-----NNELRDT-D-SLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             CEEECC-----SSCCSBS-G-GGTTCTTCCEEECTTSC
T ss_pred             cEEEcc-----CCccCCC-h-hhcCcccccEEECCCCc
Confidence            999888     7754321 1 12245677777777643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.08  E-value=4.8e-06  Score=82.43  Aligned_cols=62  Identities=13%  Similarity=0.136  Sum_probs=26.7

Q ss_pred             cccccEEEeCCccccc-cCCCcccCCcccEEEeeeeEeC-hhhHHHHhccCCccceEEEEeeec
Q 046658          132 STTLEVLKLDSDCVIN-APCVGTCFPTMKVLHMQLQNLD-NSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      +++|++|++++|.... .|.....+++|++|+|.++.++ -..+...+..++.|+.|++.+|..
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l  386 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV  386 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence            3445555554443333 1223344445555555444442 122333344445555555544443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.07  E-value=1.1e-06  Score=81.79  Aligned_cols=194  Identities=14%  Similarity=0.112  Sum_probs=123.5

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeCh-hhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDN-SLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~  185 (413)
                      .+++.|+++...  ...+|..++  ++|++|++.++.....+. ...++++|++|++.+..++. ......+..+ .|+.
T Consensus       102 ~~L~~L~L~~n~--l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A          102 RKLQKLYISKNH--LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY  176 (332)
T ss_dssp             TTCCEEECCSSC--CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred             CCCCEEECCCCc--CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence            578899887654  236777655  799999999998777764 36789999999999988743 2223334444 8999


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEEE
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEAV  262 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~~  262 (413)
                      |.+.++.. ..+..   ...++|+.|.+.     ++.............++|++|+++++....   ..+..+++|+.++
T Consensus       177 L~l~~n~l-~~l~~---~~~~~L~~L~l~-----~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  247 (332)
T 2ft3_A          177 LRISEAKL-TGIPK---DLPETLNELHLD-----HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH  247 (332)
T ss_dssp             CBCCSSBC-SSCCS---SSCSSCSCCBCC-----SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             EECcCCCC-CccCc---cccCCCCEEECC-----CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence            99998877 33322   123689999998     765432111122246889999998865432   2467788888877


Q ss_pred             EEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCC---hhhHHH--HHhcCCCCceEEecccc
Q 046658          263 VHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSG---WRVLPI--ILHSSPNLERLLVDKEC  322 (413)
Q Consensus       263 i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~---~~~l~~--ll~~~p~L~~L~i~~~~  322 (413)
                      +....  ++    .. ...+..+++|+.|.+..+...   ...+..  +....+.|+.|.+.+.+
T Consensus       248 L~~N~--l~----~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          248 LDNNK--LS----RV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             CCSSC--CC----BC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             CCCCc--Ce----ec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            64310  11    00 111335678999998876543   111111  11225788899888743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.04  E-value=8.1e-08  Score=90.73  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             CCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccc
Q 046658          286 SELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKE  321 (413)
Q Consensus       286 ~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~  321 (413)
                      ++|++|+++.+...   ...+..++..+++|+.|.+...
T Consensus       225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            48999999988754   3567778899999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.04  E-value=1.3e-05  Score=80.28  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=60.4

Q ss_pred             cccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE---EEecCccce
Q 046658          134 TLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF---IIASSTLKH  210 (413)
Q Consensus       134 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~---~i~~~~L~~  210 (413)
                      +|++|++.++.....+ ....+++|++|+|.+..+++. +...+..+|.|+.|.+.++.. ..+.. +   ....++|+.
T Consensus       332 ~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l-~~~~~-~~~~~~~l~~L~~  407 (562)
T 3a79_B          332 NIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGL-KNFFK-VALMTKNMSSLET  407 (562)
T ss_dssp             CCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCC-CBTTH-HHHTTTTCTTCCE
T ss_pred             cceEEEccCCCccccc-CccCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCc-CCccc-chhhhcCCCCCCE
Confidence            4666666665443332 225678888888888777432 223346778888888888765 22211 1   012367888


Q ss_pred             eEEEeeecCCCCCCC-CcceEEEecCceeEEEEeecc
Q 046658          211 FTLTVVIDTDNHFSE-IDHTVMLKAPNLQCLHIIADR  246 (413)
Q Consensus       211 L~i~~~~~~~~~~~~-~~~~~~~~~P~L~~L~~~~~~  246 (413)
                      |.+.     ++.... .........++|+.|+++++.
T Consensus       408 L~l~-----~N~l~~~~~~~~~~~l~~L~~L~l~~n~  439 (562)
T 3a79_B          408 LDVS-----LNSLNSHAYDRTCAWAESILVLNLSSNM  439 (562)
T ss_dssp             EECT-----TSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred             EECC-----CCcCCCccChhhhcCcccCCEEECCCCC
Confidence            8887     665432 111222345777777777743

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.02  E-value=1.6e-06  Score=81.53  Aligned_cols=139  Identities=16%  Similarity=0.159  Sum_probs=79.5

Q ss_pred             cccCCcccEEEeeeeEeC--------hhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCC
Q 046658          152 GTCFPTMKVLHMQLQNLD--------NSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHF  223 (413)
Q Consensus       152 ~~~~~~L~~L~L~~~~~~--------~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~  223 (413)
                      ...|++|+.|.+..+...        ...+..++..+|.|++|.+.++.+ ..+..   +..++|++|.+.     .|..
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~---~~~~~L~~L~L~-----~~~l  205 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK---KPRPNLKSLEII-----SGGL  205 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS---CBCTTCSEEEEE-----CSBC
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc---ccCCCCcEEEEe-----cCCC
Confidence            346788888888665331        234778899999999999998854 22222   347899999998     7764


Q ss_pred             CCCc-ceEE-EecCceeEEEEeeccc---ceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCC
Q 046658          224 SEID-HTVM-LKAPNLQCLHIIADRL---GSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGS  298 (413)
Q Consensus       224 ~~~~-~~~~-~~~P~L~~L~~~~~~~---~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~  298 (413)
                      .... ..+. ...|+|++|+++....   +...+..+..+                     .....|++|++|.+..|..
T Consensus       206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~---------------------l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL---------------------FSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG---------------------SCTTTCTTCCEEEEESCTT
T ss_pred             ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH---------------------HhcCCCCCcCEEeCCCCCC
Confidence            3210 0111 1468888888753110   00000000000                     0012467788888877654


Q ss_pred             ChhhHHHHH--hcCCCCceEEecc
Q 046658          299 GWRVLPIIL--HSSPNLERLLVDK  320 (413)
Q Consensus       299 ~~~~l~~ll--~~~p~L~~L~i~~  320 (413)
                      .......+.  ..+|+|++|.+..
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~  288 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISA  288 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCS
T ss_pred             chHHHHHHHhCccCCCCCEEECCC
Confidence            322222222  2567788888865

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=1.4e-06  Score=72.47  Aligned_cols=97  Identities=8%  Similarity=0.077  Sum_probs=68.2

Q ss_pred             eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeE-eChhhHHHHhcc---CCccceEEEEeeec--C
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQN-LDNSLTEKMFSA---CPCLEELSVHAYFD--A  194 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~~~~--~  194 (413)
                      ...+|..-...-.|++|+|++|.+.+... ...++++|++|+|.+|. +++..+..+...   ||.|++|.|.+|..  .
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            34566543344579999999986543321 35678999999999996 499988888763   78999999999975  1


Q ss_pred             CCCcceEEEecCccceeEEEeeecCCCCCCC
Q 046658          195 DDSRTNFIIASSTLKHFTLTVVIDTDNHFSE  225 (413)
Q Consensus       195 ~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~  225 (413)
                      .++.. + ..+++|++|.+.     +|...+
T Consensus       130 ~Gl~~-L-~~~~~L~~L~L~-----~c~~It  153 (176)
T 3e4g_A          130 KGIIA-L-HHFRNLKYLFLS-----DLPGVK  153 (176)
T ss_dssp             HHHHH-G-GGCTTCCEEEEE-----SCTTCC
T ss_pred             HHHHH-H-hcCCCCCEEECC-----CCCCCC
Confidence            22333 2 246888888888     886543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.01  E-value=5.1e-06  Score=81.60  Aligned_cols=163  Identities=9%  Similarity=0.074  Sum_probs=113.8

Q ss_pred             ccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeC-hhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658          131 TSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLD-NSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL  208 (413)
Q Consensus       131 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L  208 (413)
                      .+++|++|+|.++.+...++ ....+++|++|+|+++.++ ...    +..++.|+.|++.+|..    .. + ...++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l----~~-l-~~~~~L  101 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYV----QE-L-LVGPSI  101 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEE----EE-E-EECTTC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcC----CC-C-CCCCCc
Confidence            34689999999998776653 5678999999999998873 222    78899999999999976    22 2 234899


Q ss_pred             ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEEEeecceeEEEecccCcccC-CC
Q 046658          209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFC-PS  284 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~-p~  284 (413)
                      +.|.+.     ++....   ......|+|+.|+++++...   ...+.++++|+.+++..  +.++-...    ..+ ..
T Consensus       102 ~~L~L~-----~N~l~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~----~~l~~~  167 (487)
T 3oja_A          102 ETLHAA-----NNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL--NEIDTVNF----AELAAS  167 (487)
T ss_dssp             CEEECC-----SSCCCC---EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT--SCCCEEEG----GGGGGG
T ss_pred             CEEECc-----CCcCCC---CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC--CCCCCcCh----HHHhhh
Confidence            999999     887543   22234689999999996553   33567788888876632  11111111    112 24


Q ss_pred             CCCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEeccc
Q 046658          285 FSELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKE  321 (413)
Q Consensus       285 ~~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~  321 (413)
                      +++|+.|.++.+... ...    ...+|+|+.|.+...
T Consensus       168 l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSN  201 (487)
T ss_dssp             TTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSS
T ss_pred             CCcccEEecCCCccccccc----cccCCCCCEEECCCC
Confidence            678999999887644 211    225899999998874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.98  E-value=2.2e-05  Score=79.25  Aligned_cols=113  Identities=17%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.|+++...  ...+|..++  ++|++|+|.+|.+..+|.   .+++|++|+|+++.++.  +.   ...+.|++|.
T Consensus        40 ~~l~~L~ls~n~--L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LP---VLPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSC--CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CC---CCCTTCCEEE
T ss_pred             CCCcEEEecCCC--cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEE
Confidence            357777776544  346777655  799999999998777763   68999999999988732  11   2679999999


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecc
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADR  246 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~  246 (413)
                      +.+|.. ..+..    ..++|+.|.+.     ++....    +....|+|++|+++++.
T Consensus       108 Ls~N~l-~~l~~----~l~~L~~L~L~-----~N~l~~----lp~~l~~L~~L~Ls~N~  152 (622)
T 3g06_A          108 IFSNPL-THLPA----LPSGLCKLWIF-----GNQLTS----LPVLPPGLQELSVSDNQ  152 (622)
T ss_dssp             ECSCCC-CCCCC----CCTTCCEEECC-----SSCCSC----CCCCCTTCCEEECCSSC
T ss_pred             CcCCcC-CCCCC----CCCCcCEEECC-----CCCCCc----CCCCCCCCCEEECcCCc
Confidence            999876 33322    34667777777     665332    11123677777777643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.98  E-value=4.8e-06  Score=76.92  Aligned_cols=164  Identities=9%  Similarity=0.091  Sum_probs=110.3

Q ss_pred             ccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeC-hhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658          131 TSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLD-NSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL  208 (413)
Q Consensus       131 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L  208 (413)
                      .+++|++|+|.++.....++ ....+++|++|+|.++.+. ...    +..++.|++|.+.+|..    .. + ...++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l----~~-l-~~~~~L  101 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYV----QE-L-LVGPSI  101 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSEE----EE-E-EECTTC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCcc----cc-c-cCCCCc
Confidence            35789999999997766653 4678999999999988773 222    67899999999999976    22 2 235899


Q ss_pred             ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEEEeecceeEEEecccCcccCCCC
Q 046658          209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSF  285 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~  285 (413)
                      +.|.+.     ++....   ......++|+.|+++++...   ...+..+++|+.+++..  +.+.-...   ......+
T Consensus       102 ~~L~l~-----~n~l~~---~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~---~~~~~~l  168 (317)
T 3o53_A          102 ETLHAA-----NNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL--NEIDTVNF---AELAASS  168 (317)
T ss_dssp             CEEECC-----SSCCSE---EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT--SCCCEEEG---GGGGGGT
T ss_pred             CEEECC-----CCccCC---cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC--CCCCcccH---HHHhhcc
Confidence            999999     876542   22334688999999986553   33556678888776632  11110000   0011246


Q ss_pred             CCeeEEEEEeCCCC-hhhHHHHHhcCCCCceEEeccc
Q 046658          286 SELTFLEVKLAGSG-WRVLPIILHSSPNLERLLVDKE  321 (413)
Q Consensus       286 ~~L~~L~l~~~~~~-~~~l~~ll~~~p~L~~L~i~~~  321 (413)
                      ++|++|.++.+... ...    ...+|+|+.|.+...
T Consensus       169 ~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSN  201 (317)
T ss_dssp             TTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSS
T ss_pred             CcCCEEECCCCcCccccc----ccccccCCEEECCCC
Confidence            78999998876643 211    124789999998873

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.94  E-value=7.6e-07  Score=91.25  Aligned_cols=35  Identities=11%  Similarity=0.065  Sum_probs=19.8

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCc
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSD  143 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~  143 (413)
                      .++++|+++...-.. ..|..+..+++|++|++.+|
T Consensus       329 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             TTCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTC
T ss_pred             CCCCEEECCCCccCC-CChhHhccccCCcEEECCCC
Confidence            567777776443211 12333455677777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.93  E-value=1.9e-06  Score=71.67  Aligned_cols=104  Identities=16%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             cccccEEEeCCcccc--ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCC-CcceEEEecCcc
Q 046658          132 STTLEVLKLDSDCVI--NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADD-SRTNFIIASSTL  208 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~-~~~~~~i~~~~L  208 (413)
                      .++|++|++.+|...  ..|.....+++|++|+|.++.++.-   ..+..++.|+.|.+.+|.. .. +.. ..-..++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l-~~~~~~-~~~~l~~L   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRI-FGGLDM-LAEKLPNL   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCC-CSCCCH-HHHHCTTC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcC-chHHHH-HHhhCCCC
Confidence            378999999999776  5664567899999999999887433   5567889999999999987 32 333 22236789


Q ss_pred             ceeEEEeeecCCCCCCCCcc-eEEEecCceeEEEEeec
Q 046658          209 KHFTLTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~  245 (413)
                      +.|.+.     ++....-.. ......|+|++|++.++
T Consensus        98 ~~L~Ls-----~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           98 THLNLS-----GNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             CEEECB-----SSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             CEEecc-----CCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            999988     775432110 12224567777777764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.90  E-value=5.3e-06  Score=75.69  Aligned_cols=123  Identities=20%  Similarity=0.202  Sum_probs=86.4

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      ..+++.|+++...-  ..++. +..+++|++|.|.++.....+ ....+++|++|+|.++.+++-   .-+..++.|+.|
T Consensus        67 l~~L~~L~L~~n~l--~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L  139 (291)
T 1h6t_A           67 LPNVTKLFLNGNKL--TDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESL  139 (291)
T ss_dssp             CTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCcc--CCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEE
Confidence            36788888875542  23444 677899999999998776666 577889999999998887432   235678999999


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecc
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADR  246 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~  246 (413)
                      .+.+|.. ..+..  ....++|+.|.+.     ++...... . ....++|+.|+++++.
T Consensus       140 ~l~~n~l-~~~~~--l~~l~~L~~L~L~-----~N~l~~~~-~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          140 YLGNNKI-TDITV--LSRLTKLDTLSLE-----DNQISDIV-P-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             ECCSSCC-CCCGG--GGGCTTCSEEECC-----SSCCCCCG-G-GTTCTTCCEEECCSSC
T ss_pred             EccCCcC-Ccchh--hccCCCCCEEEcc-----CCccccch-h-hcCCCccCEEECCCCc
Confidence            9999876 33322  1234789999998     77654321 1 2346778888887743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.88  E-value=4.5e-06  Score=84.03  Aligned_cols=139  Identities=18%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.|+++...-  ..+++ +..+++|+.|.|.+|.+..++ ....+++|++|+|.++.+.+  + .-+..+|.|+.|.
T Consensus        65 ~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~  137 (605)
T 1m9s_A           65 PNVTKLFLNGNKL--TDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLY  137 (605)
T ss_dssp             TTCCEEECTTSCC--CCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEE
T ss_pred             CCCCEEEeeCCCC--CCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEE
Confidence            4566666553321  22333 455677777777776655555 55667777777777666632  1 1245667777777


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEE
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVV  263 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i  263 (413)
                      |.+|.. ..+..  ....++|+.|.+.     +|.......  ....|+|+.|+++++... ...+..+++|+.+.+
T Consensus       138 Ls~N~l-~~l~~--l~~l~~L~~L~Ls-----~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          138 LGNNKI-TDITV--LSRLTKLDTLSLE-----DNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  204 (605)
T ss_dssp             CCSSCC-CCCGG--GGSCTTCSEEECC-----SSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred             CCCCcc-CCchh--hcccCCCCEEECc-----CCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence            777665 22221  1123567777776     665432111  224566777766664332 123444555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.86  E-value=3.1e-06  Score=72.95  Aligned_cols=88  Identities=16%  Similarity=0.192  Sum_probs=53.1

Q ss_pred             eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE
Q 046658          123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF  201 (413)
Q Consensus       123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~  201 (413)
                      ..+|..+  .++|++|++.++.....+. ....+++|++|+|.+..++. .....+..++.|++|.+.++.. ..+....
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~   95 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQL-QSLPNGV   95 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred             cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcC-CccCHhH
Confidence            3455443  3578888888886666553 24578888888888776631 1223456778888888887765 2221100


Q ss_pred             EEecCccceeEEE
Q 046658          202 IIASSTLKHFTLT  214 (413)
Q Consensus       202 ~i~~~~L~~L~i~  214 (413)
                      ....++|+.|.+.
T Consensus        96 ~~~l~~L~~L~L~  108 (208)
T 2o6s_A           96 FDKLTQLKELALN  108 (208)
T ss_dssp             TTTCTTCCEEECC
T ss_pred             hcCccCCCEEEcC
Confidence            0123566667666

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.86  E-value=9.7e-06  Score=74.57  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=31.2

Q ss_pred             ccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEe-ChhhHH--HHhccCCccceEEEEeeec
Q 046658          131 TSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNL-DNSLTE--KMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       131 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~-~~~~l~--~l~~~cp~Le~L~l~~~~~  193 (413)
                      .+++|++|+|.+|.....++ ....+++|++|+|++..+ +...+.  ..+..+|.|++|.+.+|..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM  209 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence            45566666666555444332 334556666666665544 222221  1123455666666655544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.85  E-value=1.4e-06  Score=78.80  Aligned_cols=115  Identities=10%  Similarity=0.141  Sum_probs=73.5

Q ss_pred             eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN  200 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~  200 (413)
                      ...+|..+.  ++|++|+|.++.....+. ...++++|++|+|.++.++.- ....+..++.|+.|.+.++.. ..+...
T Consensus        19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~   94 (276)
T 2z62_A           19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALG   94 (276)
T ss_dssp             CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECTT
T ss_pred             ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCcc-CccChh
Confidence            445666543  579999999997776664 567899999999998876321 122457789999999998875 111100


Q ss_pred             EEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          201 FIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       201 ~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      .....++|+.|.+.     ++....-........++|++|+++++
T Consensus        95 ~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n  134 (276)
T 2z62_A           95 AFSGLSSLQKLVAV-----ETNLASLENFPIGHLKTLKELNVAHN  134 (276)
T ss_dssp             TTTTCTTCCEEECT-----TSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             hhcCCccccEEECC-----CCCccccCchhcccCCCCCEEECcCC
Confidence            00123678888887     66543211111224567777777764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.82  E-value=4.5e-06  Score=76.13  Aligned_cols=129  Identities=19%  Similarity=0.217  Sum_probs=79.4

Q ss_pred             CCcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      .+++.|+++...-  ..+ |..+..+++|++|.|.++.+...+ ....+++|++|+|++..++  .+...+..+|.|+.|
T Consensus        31 ~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           31 KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVL  105 (290)
T ss_dssp             TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEE
T ss_pred             CCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCccc-CCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEE
Confidence            4667776664432  222 345566788999999888776665 3467889999999888773  233455678889999


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccc
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRL  247 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~  247 (413)
                      .+.++.. ..+........++|+.|.+.     ++....-.....-..++|+.|++.++..
T Consensus       106 ~l~~N~l-~~l~~~~~~~l~~L~~L~L~-----~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G          106 DVSFNRL-TSLPLGALRGLGELQELYLK-----GNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             ECCSSCC-CCCCSSTTTTCTTCCEEECT-----TSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcC-cccCHHHHcCCCCCCEEECC-----CCCCCccChhhcccccCCCEEECCCCcC
Confidence            9988876 22211000123678888887     6654321111112356777777776433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.81  E-value=2.3e-05  Score=72.14  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=27.9

Q ss_pred             ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeCh-hhH-HHH-hccCCccceEEEEeeec
Q 046658          133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDN-SLT-EKM-FSACPCLEELSVHAYFD  193 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~-~~l-~~l-~~~cp~Le~L~l~~~~~  193 (413)
                      ++|++|+|.++.....++ ....+++|++|+|++..+.. ..+ ..+ +..++.|++|.+.+|..
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l  213 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM  213 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence            455555555554444331 34445555555555554311 111 111 14455555555555544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.80  E-value=9e-06  Score=73.21  Aligned_cols=36  Identities=31%  Similarity=0.637  Sum_probs=33.7

Q ss_pred             cCCCCChHHHHHHhcCCCcccch-hhcccchhhHHHH
Q 046658            4 RISDLPDAILGRIVSFLPTKNTV-ATSVLSRRWKHVW   39 (413)
Q Consensus         4 ~is~LPd~lL~~Ils~L~~~d~~-r~s~lSrrWr~l~   39 (413)
                      .+..||||+|.+||++||.++.+ +++.|||+|+.+.
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            57899999999999999999999 9999999999763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.78  E-value=3.9e-06  Score=74.69  Aligned_cols=128  Identities=20%  Similarity=0.162  Sum_probs=77.3

Q ss_pred             CCcEEEEEEECcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.|++....-  ..++ ..+..+++|++|+|.++.+...++ ....+++|++|+|.+..++.- ....+..++.|++
T Consensus        35 ~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCE
Confidence            3566666654332  2233 345667999999999987766654 357789999999998877421 1244577899999


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEee
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~  244 (413)
                      |.+.++.. ..+........++|+.|.+.     ++....-.....-..++|+.|++.+
T Consensus       112 L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A          112 LYLGGNQL-KSLPSGVFDRLTKLKELRLN-----TNQLQSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             EECCSSCC-CCCCTTTTTTCTTCCEEECC-----SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEcCCCcC-CCcChhHhccCCcccEEECc-----CCcCCccCHHHcCcCcCCCEEECCC
Confidence            99998876 22221000124677777777     6543311110111245666666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.78  E-value=5.3e-05  Score=79.61  Aligned_cols=179  Identities=13%  Similarity=0.135  Sum_probs=97.1

Q ss_pred             ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcccee
Q 046658          133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHF  211 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L  211 (413)
                      ++|+.|+|.++.....++ ....+++|++|+|.+..++.. ....+.+++.|+.|.+.+|.. ...........++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTTTTTTCSSCCEEEEESCCC-SCCCSCSCSSCTTCCEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChHHhcCCCCCCEEECCCCCC-CccCHHHhcCCCCCCEE
Confidence            678888888876555432 456788888888887766321 123356778888888888865 22211011234678888


Q ss_pred             EEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeec-ce--------eEEEecccCccc-
Q 046658          212 TLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISY-AE--------WSQAVDQCYDNF-  281 (413)
Q Consensus       212 ~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~-~~--------l~l~~~~~~~~~-  281 (413)
                      .+.     ++....-.....-..|+|+.|+++++...  .+..+++|+.+.+.... ..        ..+.++...... 
T Consensus       344 ~L~-----~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l  416 (844)
T 3j0a_A          344 DLQ-----KNHIAIIQDQTFKFLEKLQTLDLRDNALT--TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL  416 (844)
T ss_dssp             ECC-----SCCCCCCCSSCSCSCCCCCEEEEETCCSC--CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred             ECC-----CCCCCccChhhhcCCCCCCEEECCCCCCC--cccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence            887     66543211112234678888888875433  22336677776664311 00        012222111111 


Q ss_pred             -----CCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          282 -----CPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       282 -----~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                           +..+++|+.|.+..+..........+..+++|+.|.+..
T Consensus       417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~  460 (844)
T 3j0a_A          417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE  460 (844)
T ss_dssp             TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred             chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence                 114566777777665432111111233466777777665

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.77  E-value=4.1e-06  Score=74.57  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=32.5

Q ss_pred             cCCCCChHHHHHHhcCCCcccchhhcccchhhHHH
Q 046658            4 RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHV   38 (413)
Q Consensus         4 ~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l   38 (413)
                      .|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999953

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.71  E-value=6.2e-06  Score=77.49  Aligned_cols=223  Identities=16%  Similarity=0.119  Sum_probs=126.4

Q ss_pred             hHHHHHHHHHhccCCCCcceEEeeecCCCCc----ccHHHHHHHHH-hCCcEEEEEEECcce--------eeecCccccc
Q 046658           65 GFVDFVQTVLLRTHPGNIDSFCLHCSRPIDL----SSVNFWLSSAL-MQSVRELQLYLGQQN--------RVQLLETIYT  131 (413)
Q Consensus        65 ~~~~~v~~~L~~~~~~~l~~l~l~~~~~~~~----~~~~~wl~~a~-~~~v~~L~l~~~~~~--------~~~lp~~~~~  131 (413)
                      .+.+...++|.......|+.+.+.... +++    ..+..++..+. -.+++.|.+......        ...++..+..
T Consensus        92 ~~~~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~  170 (362)
T 2ra8_A           92 EGVNLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA  170 (362)
T ss_dssp             TTCCHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT
T ss_pred             cHHHHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhc
Confidence            444566667766665568888888432 331    12333333222 268999988532110        1134455566


Q ss_pred             cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHh-ccCCccceEEEEeee---cCCC-C---cceEEE
Q 046658          132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMF-SACPCLEELSVHAYF---DADD-S---RTNFII  203 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~-~~cp~Le~L~l~~~~---~~~~-~---~~~~~i  203 (413)
                      +|+|++|.|.++....++ . ...++|++|+|..+.++...+..+. ..+|+|+.|.|..+.   +.+. +   ...+..
T Consensus       171 ~P~L~~L~L~g~~~l~l~-~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSIG-K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             CTTCCEEEEECCBTCBCC-S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCCcEEEEeCCCCceec-c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            799999999887434444 2 3489999999998888888787776 479999999996432   1111 1   110111


Q ss_pred             -ecCccceeEEEeeecCCCCCCCCcceEE---EecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCc
Q 046658          204 -ASSTLKHFTLTVVIDTDNHFSEIDHTVM---LKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYD  279 (413)
Q Consensus       204 -~~~~L~~L~i~~~~~~~~~~~~~~~~~~---~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~  279 (413)
                       ..|+|+.|.+.     +|..........   ...|+|++|+++.+..+..-..   .+                    .
T Consensus       249 ~~~p~Lr~L~L~-----~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~---~L--------------------~  300 (362)
T 2ra8_A          249 DRFPNLKWLGIV-----DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR---LL--------------------L  300 (362)
T ss_dssp             TTCTTCCEEEEE-----SCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH---HH--------------------H
T ss_pred             CCCCCcCEEeCC-----CCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH---HH--------------------H
Confidence             25788999888     776432100000   1256777777755211100000   00                    0


Q ss_pred             ccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          280 NFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       280 ~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      ..++.+++|++|+|+.+.....++..+-+..  .-++++..
T Consensus       301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~  339 (362)
T 2ra8_A          301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD  339 (362)
T ss_dssp             TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred             hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence            0123467899999987765544444444434  34466655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.71  E-value=2.7e-06  Score=69.15  Aligned_cols=107  Identities=15%  Similarity=0.178  Sum_probs=75.9

Q ss_pred             cccccEEEeCCcccc--ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccc
Q 046658          132 STTLEVLKLDSDCVI--NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLK  209 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~  209 (413)
                      .++|+.|++.+|...  ..|.....+++|++|++.++.++.-   ..+..++.|+.|.+.+|...+.+.. .....++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~   91 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLT   91 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCC
Confidence            378999999999776  5665567899999999999988443   5577899999999999987221333 222368899


Q ss_pred             eeEEEeeecCCCCCCCCc-ceEEEecCceeEEEEeeccc
Q 046658          210 HFTLTVVIDTDNHFSEID-HTVMLKAPNLQCLHIIADRL  247 (413)
Q Consensus       210 ~L~i~~~~~~~~~~~~~~-~~~~~~~P~L~~L~~~~~~~  247 (413)
                      .|.+.     ++....-. .......|+|++|+++++..
T Consensus        92 ~L~ls-----~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           92 HLNLS-----GNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             EEECT-----TSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             EEECC-----CCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            99998     77643210 01223467888888877543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.70  E-value=0.00012  Score=72.96  Aligned_cols=70  Identities=14%  Similarity=0.103  Sum_probs=31.1

Q ss_pred             cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcccee
Q 046658          132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHF  211 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L  211 (413)
                      +++|++|+|.+|.+..+|. ..  .+|++|+|.++.++.  +..   .++.|+.|.+.+|.. ..+..    ..++|+.|
T Consensus        99 l~~L~~L~Ls~N~l~~ip~-l~--~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L  165 (571)
T 3cvr_A           99 PASLEYLDACDNRLSTLPE-LP--ASLKHLDVDNNQLTM--LPE---LPALLEYINADNNQL-TMLPE----LPTSLEVL  165 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCEE
T ss_pred             cCCCCEEEccCCCCCCcch-hh--cCCCEEECCCCcCCC--CCC---cCccccEEeCCCCcc-CcCCC----cCCCcCEE
Confidence            3455555555554444432 11  155555555554421  111   345555555555544 21211    23455555


Q ss_pred             EEE
Q 046658          212 TLT  214 (413)
Q Consensus       212 ~i~  214 (413)
                      .+.
T Consensus       166 ~Ls  168 (571)
T 3cvr_A          166 SVR  168 (571)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.61  E-value=0.00013  Score=70.76  Aligned_cols=33  Identities=9%  Similarity=0.162  Sum_probs=15.8

Q ss_pred             hccCCccceEEEEeeecCCCCcceEEEecCccceeEEE
Q 046658          177 FSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       177 ~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      +..++.|++|.+.++.. ..+..    ..++|+.|.+.
T Consensus       233 ~~~l~~L~~L~l~~N~l-~~l~~----~~~~L~~L~l~  265 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLL-KTLPD----LPPSLEALNVR  265 (454)
T ss_dssp             CTTCTTCCEEECCSSCC-SSCCS----CCTTCCEEECC
T ss_pred             cCCCCCCCEEECCCCcC-Ccccc----cccccCEEECC
Confidence            34455666666655544 22211    12455555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.59  E-value=1.2e-05  Score=69.22  Aligned_cols=102  Identities=17%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             CcEEEEEEECcceeeecCcc-ccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          109 SVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      +++.|+++...-  ..++.. +..+++|++|+|.++.+...+.. ...+++|++|+|.+..++.- ....+..++.|++|
T Consensus        29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence            556666654432  234443 34568888888888766665532 45678888888887766311 12335667888888


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEE
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      .+.++.. ..+........++|+.|.+.
T Consensus       106 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A          106 ALNTNQL-QSLPDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             ECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             EcCCCcC-cccCHhHhccCCcCCEEECC
Confidence            8887765 22211000123567777776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.57  E-value=1.7e-05  Score=68.99  Aligned_cols=154  Identities=11%  Similarity=0.163  Sum_probs=84.8

Q ss_pred             eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN  200 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~  200 (413)
                      ...+|..+.  ++|+.|+|.++.+...+. .+..+++|++|+|.+..++.- ....+.+++.|+.|.+.++.. ..+...
T Consensus        23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~   98 (220)
T 2v9t_B           23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI-TELPKS   98 (220)
T ss_dssp             CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC-CCCCTT
T ss_pred             cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC-CccCHh
Confidence            345565443  678888888887666654 456788888888887766321 123356678888888888876 222210


Q ss_pred             EEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeecceeEEEecccCcc
Q 046658          201 FIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDN  280 (413)
Q Consensus       201 ~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~  280 (413)
                      .....++|+.|.+.     ++....-........++|++|++.++....                           ....
T Consensus        99 ~f~~l~~L~~L~L~-----~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------~~~~  146 (220)
T 2v9t_B           99 LFEGLFSLQLLLLN-----ANKINCLRVDAFQDLHNLNLLSLYDNKLQT---------------------------IAKG  146 (220)
T ss_dssp             TTTTCTTCCEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCSC---------------------------CCTT
T ss_pred             HccCCCCCCEEECC-----CCCCCEeCHHHcCCCCCCCEEECCCCcCCE---------------------------ECHH
Confidence            00123567777776     554321101111124556666555521110                           0011


Q ss_pred             cCCCCCCeeEEEEEeCCCC----hhhHHHHHhcCC
Q 046658          281 FCPSFSELTFLEVKLAGSG----WRVLPIILHSSP  311 (413)
Q Consensus       281 ~~p~~~~L~~L~l~~~~~~----~~~l~~ll~~~p  311 (413)
                      .+..+++|+.|.+..+...    ..++...+..-+
T Consensus       147 ~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~  181 (220)
T 2v9t_B          147 TFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP  181 (220)
T ss_dssp             TTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred             HHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCC
Confidence            2345667888888776532    455555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.56  E-value=1.4e-05  Score=70.07  Aligned_cols=131  Identities=16%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE
Q 046658          123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF  201 (413)
Q Consensus       123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~  201 (413)
                      ..+|..+.  ++|++|.|.++.+...++ ....+++|++|+|.+..++.- -...+..++.|+.|.+.++.. ..+....
T Consensus        32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~  107 (229)
T 3e6j_A           32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPSAV  107 (229)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred             CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccChhH
Confidence            34444332  566677776665555432 345566677777766655211 112345566677777766654 2111100


Q ss_pred             EEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccccee---eeecCCCceEEEE
Q 046658          202 IIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSY---VLEEMHCLHEAVV  263 (413)
Q Consensus       202 ~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~---~~~~~~~L~~~~i  263 (413)
                      ....++|+.|.+.     ++.... ........++|+.|+++++.....   .+..+++|+.+.+
T Consensus       108 ~~~l~~L~~L~Ls-----~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A          108 FDRLVHLKELFMC-----CNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TTTCTTCCEEECC-----SSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             hCcchhhCeEecc-----CCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            0123566666666     554321 111112456677777776544322   2455667776555

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.55  E-value=2.7e-05  Score=68.23  Aligned_cols=149  Identities=13%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             ccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEE
Q 046658          135 LEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       135 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      -..++..+.....+|.  .-.++|++|+|.+..+..- ....+..++.|++|.+.++.. ..+........++|+.|.+.
T Consensus        21 ~~~v~c~~~~l~~ip~--~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA--GIPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCS--CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCC--CCCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECC
Confidence            4566776665555552  2247888888888776321 123456678888888888776 22221001124678888887


Q ss_pred             eeecCCCCCCCCcceEEEecCceeEEEEeecccce--eeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEE
Q 046658          215 VVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS--YVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLE  292 (413)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~--~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~  292 (413)
                           ++....-.....-..++|+.|+++++....  ..+..+++|+.+++...  .+    .......+..+++|+.|.
T Consensus        97 -----~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N--~l----~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           97 -----TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN--QL----KSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             -----SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS--CC----CCCCTTTTTTCTTCCEEE
T ss_pred             -----CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC--cC----CccCHHHHhCCCCCCEEE
Confidence                 665432111111246788888888754432  23456777777665321  00    011112244567788888


Q ss_pred             EEeCCC
Q 046658          293 VKLAGS  298 (413)
Q Consensus       293 l~~~~~  298 (413)
                      +..+..
T Consensus       166 l~~N~~  171 (229)
T 3e6j_A          166 LFGNPW  171 (229)
T ss_dssp             CTTSCB
T ss_pred             eeCCCc
Confidence            776553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.53  E-value=1.4e-06  Score=74.69  Aligned_cols=63  Identities=16%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             cccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          128 TIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       128 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      .+..+++|++|+|.+|.....| ....+++|++|+|.++.++  .+...+..+|.|+.|.+.+|..
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l  105 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEEC
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcC
Confidence            3444455555555555444444 4445555555555555553  1223333445555555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.52  E-value=2.6e-05  Score=78.76  Aligned_cols=130  Identities=17%  Similarity=0.185  Sum_probs=81.1

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      ..+++|+++...  ...+|+ .+..+++|++|+|++|.+...++ .+.++++|++|+|.+..++.- -...+.+++.|++
T Consensus        52 ~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCE
Confidence            467777777544  334554 45667888888888887666654 356788888888888766221 1234577888888


Q ss_pred             EEEEeeecCCCCcceEEE-ecCccceeEEEeeecCCCCCCCC-cceEEEecCceeEEEEeeccc
Q 046658          186 LSVHAYFDADDSRTNFII-ASSTLKHFTLTVVIDTDNHFSEI-DHTVMLKAPNLQCLHIIADRL  247 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i-~~~~L~~L~i~~~~~~~~~~~~~-~~~~~~~~P~L~~L~~~~~~~  247 (413)
                      |.+.+|.. ..+.. ..+ ..++|+.|.+.     ++..... ........++|++|+++++..
T Consensus       129 L~Ls~N~l-~~l~~-~~~~~L~~L~~L~Ls-----~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          129 LVAVETNL-ASLEN-FPIGHLKTLKELNVA-----HNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             EECTTSCC-CCSTT-CCCTTCTTCCEEECC-----SSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcC-CCCCh-hhhhcCcccCeeccc-----cCccccCCCchhhccchhhhhhcccCccc
Confidence            88888866 32322 111 24678888887     6653211 111122357788888777533

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.46  E-value=2.3e-05  Score=75.83  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=36.9

Q ss_pred             CccCCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhc
Q 046658            2 GYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTS   41 (413)
Q Consensus         2 ~D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~   41 (413)
                      .|.|+.||+|++.+||+||+.++.++++.|||+|+++...
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            4889999999999999999999999999999999976554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.46  E-value=0.00016  Score=67.59  Aligned_cols=16  Identities=19%  Similarity=0.019  Sum_probs=7.8

Q ss_pred             ccCCccceEEEEeeec
Q 046658          178 SACPCLEELSVHAYFD  193 (413)
Q Consensus       178 ~~cp~Le~L~l~~~~~  193 (413)
                      ..++.|+.|.+.++..
T Consensus       101 ~~l~~L~~L~l~~n~l  116 (350)
T 4ay9_X          101 QNLPNLQYLLISNTGI  116 (350)
T ss_dssp             CCCTTCCEEEEEEECC
T ss_pred             hhcccccccccccccc
Confidence            3445555555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.43  E-value=7.8e-05  Score=61.92  Aligned_cols=84  Identities=8%  Similarity=-0.021  Sum_probs=63.4

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC--Cccc----CCcccEEEeeeeE-eChhhHHHHhccC
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTC----FPTMKVLHMQLQN-LDNSLTEKMFSAC  180 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~----~~~L~~L~L~~~~-~~~~~l~~l~~~c  180 (413)
                      ..+++|+++.+.-....+.. +..|++|++|+|.+|...+-.+  ....    +++|++|+|++|. +++..+..+ +.|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGC
T ss_pred             ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcC
Confidence            35899999976543444433 4679999999999996433211  1222    4689999999997 599999886 579


Q ss_pred             CccceEEEEeeec
Q 046658          181 PCLEELSVHAYFD  193 (413)
Q Consensus       181 p~Le~L~l~~~~~  193 (413)
                      |+|++|.+.+|..
T Consensus       139 ~~L~~L~L~~c~~  151 (176)
T 3e4g_A          139 RNLKYLFLSDLPG  151 (176)
T ss_dssp             TTCCEEEEESCTT
T ss_pred             CCCCEEECCCCCC
Confidence            9999999999987

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.43  E-value=2.3e-05  Score=68.21  Aligned_cols=129  Identities=15%  Similarity=0.190  Sum_probs=75.8

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCcccccc-CCCcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINA-PCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .++++|++....  ...+|. .+..+++|++|+|.++.+... |..+.++++|++|+|.+..++. .-..++.+++.|+.
T Consensus        32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCCCE
Confidence            356666665443  223443 445568888888888866655 3356678888888888777631 11234566788888


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      |.+.++.. ..+........++|+.|.+.     ++....-.....-..++|+.|++.++
T Consensus       109 L~L~~N~l-~~~~~~~~~~l~~L~~L~L~-----~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          109 LLLNANKI-NCLRVDAFQDLHNLNLLSLY-----DNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             EECCSSCC-CCCCTTTTTTCTTCCEEECC-----SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCCC-CEeCHHHcCCCCCCCEEECC-----CCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            88888766 22211001123678888887     66543211111113567777777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.40  E-value=0.00019  Score=69.66  Aligned_cols=117  Identities=14%  Similarity=0.155  Sum_probs=63.7

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .+++.|++....-  ..+| .+..+++|++|++.++.....|.   ..++|++|++.++.+..  +. -+..++.|+.|.
T Consensus       131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp~---~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccCC---CcccccEEECcCCcCCc--Cc-cccCCCCCCEEE
Confidence            3566666654332  2245 35566777777777765544441   23467777777666532  11 146677777777


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      +.+|.. ..+..    ..++|+.|.+.     ++.... ... ....++|++|+++++
T Consensus       202 l~~N~l-~~l~~----~~~~L~~L~l~-----~n~l~~-lp~-~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          202 ADNNSL-KKLPD----LPLSLESIVAG-----NNILEE-LPE-LQNLPFLTTIYADNN  247 (454)
T ss_dssp             CCSSCC-SSCCC----CCTTCCEEECC-----SSCCSS-CCC-CTTCTTCCEEECCSS
T ss_pred             CCCCcC-CcCCC----CcCcccEEECc-----CCcCCc-ccc-cCCCCCCCEEECCCC
Confidence            777765 22222    12467777776     554331 111 124566666666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.36  E-value=3.4e-05  Score=67.14  Aligned_cols=30  Identities=10%  Similarity=0.279  Sum_probs=14.5

Q ss_pred             cCceeEEEEeecccc---eeeeecCCCceEEEE
Q 046658          234 APNLQCLHIIADRLG---SYVLEEMHCLHEAVV  263 (413)
Q Consensus       234 ~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i  263 (413)
                      .++|+.|++.++...   ...+..+++|+.+++
T Consensus       128 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A          128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence            355555555553332   123445556665544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.36  E-value=7.3e-05  Score=64.98  Aligned_cols=67  Identities=12%  Similarity=0.179  Sum_probs=36.5

Q ss_pred             ecCccccccccccEEEeCCccccccCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          124 QLLETIYTSTTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       124 ~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      .+|..+.  +.+++|.|.++.+...++  ....+++|++|+|.+..++.- ....+..++.|++|.+.++..
T Consensus        25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred             cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCcc
Confidence            3454332  345677777765555432  245667777777766655211 012345566666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.36  E-value=2.4e-05  Score=65.47  Aligned_cols=80  Identities=13%  Similarity=-0.002  Sum_probs=41.2

Q ss_pred             cccccccEEEeCCccccccCCCccc-CCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcc
Q 046658          130 YTSTTLEVLKLDSDCVINAPCVGTC-FPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTL  208 (413)
Q Consensus       130 ~~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L  208 (413)
                      ..+.+|+.|.+.+|.....+ .... +++|++|+|+++.++.-   ..+..++.|+.|.+.+|.. ..+...+....++|
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL   90 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred             CCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcCCCC
Confidence            34566666776666555544 2333 33666666666655321   2345566666666666654 11110000123556


Q ss_pred             ceeEEE
Q 046658          209 KHFTLT  214 (413)
Q Consensus       209 ~~L~i~  214 (413)
                      +.|.+.
T Consensus        91 ~~L~L~   96 (176)
T 1a9n_A           91 TELILT   96 (176)
T ss_dssp             CEEECC
T ss_pred             CEEECC
Confidence            666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.35  E-value=3.3e-05  Score=69.22  Aligned_cols=120  Identities=16%  Similarity=0.207  Sum_probs=59.4

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      ..++.|++....-  ..+| .+..+++|++|+|.+|.+.+.+ ....+++|++|+|.+..+++  +..+ .. +.|+.|.
T Consensus        41 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~L~~N~i~~~~-~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~  112 (263)
T 1xeu_A           41 SGVQNFNGDNSNI--QSLA-GMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLF  112 (263)
T ss_dssp             TTCSEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEE
T ss_pred             CcCcEEECcCCCc--ccch-HHhhCCCCCEEECCCCccCCCh-hhccCCCCCEEECCCCccCC--cCcc-cc-CcccEEE
Confidence            4555555553321  2233 3445566677777666555555 25566666777666665522  1111 11 6666666


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      +.+|.. .++.. + ...++|+.|.+.     ++....- . .....++|+.|+++++
T Consensus       113 L~~N~l-~~~~~-l-~~l~~L~~L~Ls-----~N~i~~~-~-~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          113 LDNNEL-RDTDS-L-IHLKNLEILSIR-----NNKLKSI-V-MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CCSSCC-SBSGG-G-TTCTTCCEEECT-----TSCCCBC-G-GGGGCTTCCEEECTTS
T ss_pred             ccCCcc-CCChh-h-cCcccccEEECC-----CCcCCCC-h-HHccCCCCCEEECCCC
Confidence            666655 22221 0 123566666666     5543211 0 1112455666655553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.32  E-value=1.3e-06  Score=82.64  Aligned_cols=40  Identities=25%  Similarity=0.201  Sum_probs=30.2

Q ss_pred             CCCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccc
Q 046658          284 SFSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECW  323 (413)
Q Consensus       284 ~~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~  323 (413)
                      ..++|++|+|+.+...   ...+...+..+|+|++|.+.....
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            3457888888887765   345777788999999999988543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.30  E-value=3.3e-05  Score=68.00  Aligned_cols=168  Identities=11%  Similarity=0.100  Sum_probs=104.5

Q ss_pred             hCCcEEEEEEECcceeeecCc-cccccccccEEEeCC-ccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCcc
Q 046658          107 MQSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDS-DCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCL  183 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L  183 (413)
                      ..+++.|++..... ...++. .+..+++|++|++.+ +.....+. ...++++|++|+|.+..++.  +.. +..++.|
T Consensus        54 l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L  129 (239)
T 2xwt_C           54 LPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST  129 (239)
T ss_dssp             CTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred             CCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence            36789999986641 124454 455789999999998 66655553 46689999999999988733  223 6778888


Q ss_pred             c---eEEEEee-ecCCCCcceEEEecCccc-eeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecc-cce---eeeec
Q 046658          184 E---ELSVHAY-FDADDSRTNFIIASSTLK-HFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADR-LGS---YVLEE  254 (413)
Q Consensus       184 e---~L~l~~~-~~~~~~~~~~~i~~~~L~-~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~-~~~---~~~~~  254 (413)
                      +   .|.+.++ .. ..+........++|+ .|.+.     ++.... .....+..++|+.|++.++. ...   ..+..
T Consensus       130 ~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~-----~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~  202 (239)
T 2xwt_C          130 DIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLY-----NNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG  202 (239)
T ss_dssp             CSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECC-----SCCCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTTTTT
T ss_pred             ccccEEECCCCcch-hhcCcccccchhcceeEEEcC-----CCCCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc
Confidence            8   9999988 43 111100001246788 88887     664321 01111123689999998863 432   23456


Q ss_pred             C-CCceEEEEEeecceeEEEecccCcccCC--CCCCeeEEEEEeC
Q 046658          255 M-HCLHEAVVHISYAEWSQAVDQCYDNFCP--SFSELTFLEVKLA  296 (413)
Q Consensus       255 ~-~~L~~~~i~~~~~~l~l~~~~~~~~~~p--~~~~L~~L~l~~~  296 (413)
                      + ++|+.+++..           ..-..+|  .|++|++|.+..+
T Consensus       203 l~~~L~~L~l~~-----------N~l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          203 VYSGPSLLDVSQ-----------TSVTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             CSBCCSEEECTT-----------CCCCCCCCTTCTTCSEEECTTC
T ss_pred             cccCCcEEECCC-----------CccccCChhHhccCceeeccCc
Confidence            6 7888776632           1112233  5788999987654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.29  E-value=0.00028  Score=71.14  Aligned_cols=114  Identities=11%  Similarity=0.135  Sum_probs=69.1

Q ss_pred             eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN  200 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~  200 (413)
                      -..+|..+.  +++++|+|+++.+...++ .+.++++|++|+|+++.++.- -...+.+++.|++|.|.+|.. ..+...
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l-~~l~~~  118 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALG  118 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECGG
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcC-CCCCHH
Confidence            445666542  479999999998777764 567899999999998876211 022457789999999999865 211110


Q ss_pred             EEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEee
Q 046658          201 FIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       201 ~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~  244 (413)
                      .....++|+.|.+.     ++....-.....-..++|++|++++
T Consensus       119 ~f~~L~~L~~L~Ls-----~N~l~~l~~~~~~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          119 AFSGLSSLQKLVAV-----ETNLASLENFPIGHLKTLKELNVAH  157 (635)
T ss_dssp             GGTTCTTCCEEECT-----TSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred             HhcCCCCCCEEECC-----CCcCCCCChhhhhcCcccCeecccc
Confidence            00123567777777     6543221111112345555555554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.25  E-value=0.00012  Score=70.43  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=35.0

Q ss_pred             CccCCCCChHHHHHHhcCCCcccchhhcccchhhHHH
Q 046658            2 GYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHV   38 (413)
Q Consensus         2 ~D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l   38 (413)
                      .|.|+.||+|++.+||+||+.+|.++++.|||+|+.+
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            5889999999999999999999999999999999863

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.13  E-value=9.9e-05  Score=61.62  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=48.3

Q ss_pred             eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE
Q 046658          123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF  201 (413)
Q Consensus       123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~  201 (413)
                      ..+|..++  ++|++|.+.++.....+. ....+++|++|+|.+..++.- ....+..++.|+.|.+.++.. ..+....
T Consensus        20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~   95 (177)
T 2o6r_A           20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKL-QSLPNGV   95 (177)
T ss_dssp             SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred             ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCc-cccCHHH
Confidence            34454333  577777777776555543 245677777777777665311 123345677777777777665 2111100


Q ss_pred             EEecCccceeEEE
Q 046658          202 IIASSTLKHFTLT  214 (413)
Q Consensus       202 ~i~~~~L~~L~i~  214 (413)
                      ....++|+.|.+.
T Consensus        96 ~~~l~~L~~L~l~  108 (177)
T 2o6r_A           96 FDKLTQLKELALD  108 (177)
T ss_dssp             TTTCTTCCEEECC
T ss_pred             hhCCcccCEEECc
Confidence            0123556666666

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.12  E-value=6.8e-05  Score=72.11  Aligned_cols=37  Identities=30%  Similarity=0.515  Sum_probs=34.7

Q ss_pred             CccCCCCChH----HHHHHhcCCCcccchhhcccchhhHHH
Q 046658            2 GYRISDLPDA----ILGRIVSFLPTKNTVATSVLSRRWKHV   38 (413)
Q Consensus         2 ~D~is~LPd~----lL~~Ils~L~~~d~~r~s~lSrrWr~l   38 (413)
                      .|.|+.||+|    ++.+||+||+.++.++++.|||+|+.+
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4889999999    999999999999999999999999953

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.10  E-value=8.7e-05  Score=63.10  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=41.0

Q ss_pred             eecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          123 VQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ..+|..++  ++|++|.|.++.+..+|.....+++|++|+|.+..++.- ....+.+++.|++|.+.++..
T Consensus        23 ~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           23 KVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCcc
Confidence            34554433  467777777776655554556677777777776666221 112345667777777777655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.09  E-value=7.9e-05  Score=70.05  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=38.5

Q ss_pred             ecCccccccccccEEEeCCccccccCCC-cc-cCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          124 QLLETIYTSTTLEVLKLDSDCVINAPCV-GT-CFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       124 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~-~~-~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      .+|..+.  +.++.|+|+++.+...+.. .. .+++|++|+|.+..++.-. ...+..++.|+.|.|.++..
T Consensus        32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred             ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC
Confidence            4454433  3467777777766555432 23 6777777777766552111 12345667777777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.08  E-value=0.00012  Score=61.07  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=54.0

Q ss_pred             cccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce-EEEecCccceeE
Q 046658          134 TLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN-FIIASSTLKHFT  212 (413)
Q Consensus       134 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~-~~i~~~~L~~L~  212 (413)
                      +|++|+|++|.+...+ ....+++|++|+|.+..++.- -..++..+|.|+.|.+.+|.. ..+... .....++|+.|.
T Consensus        43 ~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCccc-ccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEE
Confidence            6666666666554443 455566666666666655311 112335566666666666655 222210 001235666666


Q ss_pred             EEeeecCCCCCCCCcce---EEEecCceeEEEEeec
Q 046658          213 LTVVIDTDNHFSEIDHT---VMLKAPNLQCLHIIAD  245 (413)
Q Consensus       213 i~~~~~~~~~~~~~~~~---~~~~~P~L~~L~~~~~  245 (413)
                      +.     ++........   .....|+|+.|++.+.
T Consensus       120 l~-----~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          120 IL-----RNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CC-----SSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ec-----CCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            66     5543321111   1235677777777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.04  E-value=0.0001  Score=62.59  Aligned_cols=69  Identities=13%  Similarity=0.115  Sum_probs=47.2

Q ss_pred             eeecCccccccccccEEEeCCccccccCC--CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPC--VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ...+|..++.  +|++|.|.++.+...+.  ....+++|++|+|.+..++.- ....+..++.|++|.+.++..
T Consensus        20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC
T ss_pred             cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC
Confidence            3455655443  78888888887666653  256788888888888776321 123456678888888888766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.99  E-value=0.00044  Score=64.87  Aligned_cols=131  Identities=20%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             CCcEEEEEEECcceeeecCcccc--ccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658          108 QSVRELQLYLGQQNRVQLLETIY--TSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE  184 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~--~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  184 (413)
                      ..++.|+++...  ...++...+  .+++|++|.|.++.+...++ .+..+++|++|+|.+..++.- ....+..++.|+
T Consensus        39 ~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CCCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence            345666666443  234454444  67888888888887766653 466788888888888766321 123456778888


Q ss_pred             eEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEE---EecCceeEEEEeeccc
Q 046658          185 ELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVM---LKAPNLQCLHIIADRL  247 (413)
Q Consensus       185 ~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~---~~~P~L~~L~~~~~~~  247 (413)
                      .|.|.++.. ..+........++|+.|.+.     ++....-.....   ...++|+.|+++++..
T Consensus       116 ~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~-----~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          116 VLLLYNNHI-VVVDRNAFEDMAQLQKLYLS-----QNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             EEECCSSCC-CEECTTTTTTCTTCCEEECC-----SSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             EEECCCCcc-cEECHHHhCCcccCCEEECC-----CCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            888888765 11100000123678888887     665432111111   2467777777777433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.94  E-value=0.0016  Score=64.86  Aligned_cols=174  Identities=15%  Similarity=0.156  Sum_probs=111.3

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      ..+++.|++....-  ..+|..++  ++|++|+|.+|.+..+|   ..+++|++|+|.++.++.  +.. +.  ..|+.|
T Consensus        58 ~~~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L  125 (571)
T 3cvr_A           58 INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE-LP--ASLKHL  125 (571)
T ss_dssp             HTTCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEE
T ss_pred             cCCccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch-hh--cCCCEE
Confidence            35788888875542  34777654  78999999998777665   558999999999887743  322 22  289999


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceee-eecCCCceEEEEEe
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYV-LEEMHCLHEAVVHI  265 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~-~~~~~~L~~~~i~~  265 (413)
                      .+.+|.. ..+..    ..++|+.|.+.     ++.... ...   ..++|++|+++++....+. +.  ++|+.+++..
T Consensus       126 ~Ls~N~l-~~lp~----~l~~L~~L~Ls-----~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          126 DVDNNQL-TMLPE----LPALLEYINAD-----NNQLTM-LPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVST  189 (571)
T ss_dssp             ECCSSCC-SCCCC----CCTTCCEEECC-----SSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCS
T ss_pred             ECCCCcC-CCCCC----cCccccEEeCC-----CCccCc-CCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcC
Confidence            9999877 33332    46789999998     776542 222   4678999999986543211 22  6777665532


Q ss_pred             ecceeEEEecccCcccCCCC-CCe-------eEEEEEeCCCChhhHHHHHhcCCCCceEEeccc
Q 046658          266 SYAEWSQAVDQCYDNFCPSF-SEL-------TFLEVKLAGSGWRVLPIILHSSPNLERLLVDKE  321 (413)
Q Consensus       266 ~~~~l~l~~~~~~~~~~p~~-~~L-------~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~  321 (413)
                                 .....+|.+ .+|       +.|.++.+...  .++.-+..+|+|+.|.+...
T Consensus       190 -----------N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          190 -----------NLLESLPAVPVRNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             -----------SCCSSCCCCC--------CCEEEECCSSCCC--CCCGGGGGSCTTEEEECCSS
T ss_pred             -----------CCCCchhhHHHhhhcccccceEEecCCCcce--ecCHHHhcCCCCCEEEeeCC
Confidence                       111122222 156       77777765433  33443445888888888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.88  E-value=0.00024  Score=70.95  Aligned_cols=79  Identities=20%  Similarity=0.172  Sum_probs=45.4

Q ss_pred             CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658          109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV  188 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  188 (413)
                      .++.|+++...  ...+|. +..+++|+.|+|++|.+..+|....++++|++|+|++..++.  +. -+..++.|+.|.+
T Consensus       442 ~L~~L~Ls~n~--l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKD--LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSC--CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCC--CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence            34555554332  223454 555666777777666555555455566667777776666532  22 3556666777766


Q ss_pred             Eeeec
Q 046658          189 HAYFD  193 (413)
Q Consensus       189 ~~~~~  193 (413)
                      .+|..
T Consensus       516 s~N~l  520 (567)
T 1dce_A          516 CNNRL  520 (567)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            66655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.76  E-value=0.0071  Score=56.24  Aligned_cols=33  Identities=6%  Similarity=-0.037  Sum_probs=15.7

Q ss_pred             cccEEEeCCccccccCC-CcccCCcccEEEeeee
Q 046658          134 TLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQ  166 (413)
Q Consensus       134 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~  166 (413)
                      ++++|+|.++.+..+|. .+.++++|++|+|++.
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   64 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN   64 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC
Confidence            45555555544444432 2344555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.70  E-value=0.00017  Score=74.22  Aligned_cols=110  Identities=15%  Similarity=0.046  Sum_probs=56.7

Q ss_pred             CccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEec
Q 046658          126 LETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIAS  205 (413)
Q Consensus       126 p~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~  205 (413)
                      |..+..++.|+.|+|.++.+..+|.....+++|++|+|.++.++  .+..-+..++.|+.|+|.+|.. ..+.. .....
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~-~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSLPA-ELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSCCS-SGGGG
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-CccCh-hhcCC
Confidence            33445556677777766665555544556666777777666553  2233345566677777766665 22221 11123


Q ss_pred             CccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          206 STLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       206 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      ++|+.|.+.     ++.... ........++|+.|+++++
T Consensus       293 ~~L~~L~L~-----~N~l~~-lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          293 FQLKYFYFF-----DNMVTT-LPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             TTCSEEECC-----SSCCCC-CCSSTTSCTTCCCEECTTS
T ss_pred             CCCCEEECC-----CCCCCc-cChhhhcCCCccEEeCCCC
Confidence            566666666     554321 1111223566677766664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.67  E-value=0.00021  Score=73.66  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=78.7

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      ..++.|+++...  ...+|..++.+++|++|.|.+|.+..+|.....+++|++|+|+++.++  .+..-+..++.|+.|.
T Consensus       224 ~~L~~L~Ls~n~--l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQ--IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSC--CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCC--CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence            456777776544  347888888999999999999977777756778999999999998875  3344467789999999


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCC
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFS  224 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~  224 (413)
                      |.+|.. ..+.. ..-..++|+.|.+.     ++...
T Consensus       300 L~~N~l-~~lp~-~~~~l~~L~~L~L~-----~N~l~  329 (727)
T 4b8c_D          300 FFDNMV-TTLPW-EFGNLCNLQFLGVE-----GNPLE  329 (727)
T ss_dssp             CCSSCC-CCCCS-STTSCTTCCCEECT-----TSCCC
T ss_pred             CCCCCC-CccCh-hhhcCCCccEEeCC-----CCccC
Confidence            999876 33332 11234789999998     76643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.61  E-value=0.00059  Score=68.11  Aligned_cols=84  Identities=20%  Similarity=0.216  Sum_probs=68.8

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      -.+++.|+++...-  ..+|..+..+++|+.|+|++|.+..+| ....+++|++|+|++..++.-.....+..++.|+.|
T Consensus       462 l~~L~~L~Ls~N~l--~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCC--CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCcccc--cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            36889999886653  378988899999999999999887777 788899999999999988433213446789999999


Q ss_pred             EEEeeec
Q 046658          187 SVHAYFD  193 (413)
Q Consensus       187 ~l~~~~~  193 (413)
                      .+.++..
T Consensus       539 ~L~~N~l  545 (567)
T 1dce_A          539 NLQGNSL  545 (567)
T ss_dssp             ECTTSGG
T ss_pred             EecCCcC
Confidence            9999876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.61  E-value=0.00067  Score=57.49  Aligned_cols=83  Identities=17%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      .++++|.+....-  ..+|..+..+++|++|+|+++.+...++ .+.++++|++|+|.+..++.-. ...+..++.|+.|
T Consensus        31 ~~l~~L~L~~n~i--~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCC--CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcC--chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence            4677777775543  3567777788999999999998777664 4678999999999988773211 2235678999999


Q ss_pred             EEEeeec
Q 046658          187 SVHAYFD  193 (413)
Q Consensus       187 ~l~~~~~  193 (413)
                      .+.++..
T Consensus       108 ~L~~N~l  114 (193)
T 2wfh_A          108 SLHGNDI  114 (193)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCCC
Confidence            9998876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.46  E-value=0.00094  Score=55.51  Aligned_cols=103  Identities=17%  Similarity=0.150  Sum_probs=65.7

Q ss_pred             CCcEEEEEEECcceeeecCcc-ccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .++++|++....  ...+|.. +..+++|++|+|.++.+...++. ...+++|++|+|.+..++.- ....+..++.|+.
T Consensus        28 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence            466777766543  2345544 34678999999998877666643 46789999999998877321 1234567889999


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEE
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      |.+.++.. ..+........++|+.|.+.
T Consensus       105 L~l~~N~l-~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A          105 LALDTNQL-KSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             EECCSSCC-SCCCTTTTTTCTTCCEEECC
T ss_pred             EECcCCcc-eEeCHHHhcCCcccCEEEec
Confidence            99988876 22221000123566666666

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.41  E-value=0.00095  Score=56.68  Aligned_cols=105  Identities=12%  Similarity=0.133  Sum_probs=75.0

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      -.+++.|+++...-  ..+| .+..+++|++|+|.+|.+..+|.....+++|++|+|.++.++.  +. -+..++.|+.|
T Consensus        47 l~~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           47 LKACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEE
T ss_pred             CCCCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEE
Confidence            46788888875542  3356 6677899999999998777777445567899999999998843  22 35678999999


Q ss_pred             EEEeeecCCCCcce-EEEecCccceeEEEeeecCCCCC
Q 046658          187 SVHAYFDADDSRTN-FIIASSTLKHFTLTVVIDTDNHF  223 (413)
Q Consensus       187 ~l~~~~~~~~~~~~-~~i~~~~L~~L~i~~~~~~~~~~  223 (413)
                      .+.++.. ..+... .....++|+.|.+.     ++..
T Consensus       121 ~l~~N~i-~~~~~~~~l~~l~~L~~L~l~-----~N~l  152 (198)
T 1ds9_A          121 YMSNNKI-TNWGEIDKLAALDKLEDLLLA-----GNPL  152 (198)
T ss_dssp             EESEEEC-CCHHHHHHHTTTTTCSEEEEC-----SCHH
T ss_pred             ECCCCcC-CchhHHHHHhcCCCCCEEEec-----CCcc
Confidence            9999887 322210 01135789999998     7754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.39  E-value=0.0014  Score=54.21  Aligned_cols=69  Identities=19%  Similarity=0.116  Sum_probs=44.9

Q ss_pred             eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ...+|..+.  ++|++|+|.++.+...++ .+.++++|++|+|.+..++.- ....+..++.|+.|.+.++..
T Consensus        21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCcc
Confidence            344565443  678888888877666643 456778888888887766311 123346677888888877765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.26  E-value=0.00065  Score=57.50  Aligned_cols=101  Identities=16%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             cEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEe
Q 046658          136 EVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTV  215 (413)
Q Consensus       136 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~  215 (413)
                      +++++.++....+|.  .-+++|++|+|.+..++.-.-..++..++.|+.|.+.++.. ..+........++|+.|.+. 
T Consensus        11 ~~l~~s~~~l~~ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls-   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR--DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLG-   86 (192)
T ss_dssp             TEEECTTSCCSSCCS--CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECC-
T ss_pred             CEEEcCCCCcCcCcc--CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECC-
Confidence            788888887766663  22458999999998874322223467889999999999876 22211000123678888887 


Q ss_pred             eecCCCCCCCCcceEEEecCceeEEEEee
Q 046658          216 VIDTDNHFSEIDHTVMLKAPNLQCLHIIA  244 (413)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~P~L~~L~~~~  244 (413)
                          ++.............++|++|++++
T Consensus        87 ----~N~l~~~~~~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           87 ----ENKIKEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             ----SCCCCEECSSSSTTCTTCCEEECCS
T ss_pred             ----CCcCCccCHHHhcCCCCCCEEECCC
Confidence                6554311000011245566665555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.20  E-value=0.0021  Score=53.43  Aligned_cols=68  Identities=15%  Similarity=0.112  Sum_probs=44.4

Q ss_pred             eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ..+|..+.  ++|++|.|.++.+...++ ...++++|++|+|.+..++.- -..++..++.|+.|.+.++..
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCcc
Confidence            45565543  678888888877666643 456778888888887766321 122345677888888877765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.12  E-value=0.0028  Score=53.23  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=16.4

Q ss_pred             CCcccEEEeeeeEeChhhH---HHHhccCCccceEEE
Q 046658          155 FPTMKVLHMQLQNLDNSLT---EKMFSACPCLEELSV  188 (413)
Q Consensus       155 ~~~L~~L~L~~~~~~~~~l---~~l~~~cp~Le~L~l  188 (413)
                      .++|++|+|.++.+++...   ...+..++.|++|.+
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence            3455555555555544332   222344455555555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.06  E-value=0.0021  Score=59.27  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=47.8

Q ss_pred             cCceeEEEEeeccc---ceeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCee-EEEEEeCCCChhhHHHHHhc
Q 046658          234 APNLQCLHIIADRL---GSYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELT-FLEVKLAGSGWRVLPIILHS  309 (413)
Q Consensus       234 ~P~L~~L~~~~~~~---~~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~-~L~l~~~~~~~~~l~~ll~~  309 (413)
                      +++|+++++.++..   +...+.++.+|+++.+.-.       +.......+..+.+|+ .|.+...-...  -...+..
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-------i~~I~~~aF~~~~~L~~~l~l~~~l~~I--~~~aF~~  295 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-------LKTIGQRVFSNCGRLAGTLELPASVTAI--EFGAFMG  295 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-------CCEECTTTTTTCTTCCEEEEECTTCCEE--CTTTTTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-------cceehHHHhhCChhccEEEEEcccceEE--chhhhhC
Confidence            68899998887433   2445677888888766210       0011123355677788 88886521111  1235679


Q ss_pred             CCCCceEEecc
Q 046658          310 SPNLERLLVDK  320 (413)
Q Consensus       310 ~p~L~~L~i~~  320 (413)
                      |++|++|.+..
T Consensus       296 c~~L~~l~l~~  306 (329)
T 3sb4_A          296 CDNLRYVLATG  306 (329)
T ss_dssp             CTTEEEEEECS
T ss_pred             CccCCEEEeCC
Confidence            99999999865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.90  E-value=0.0046  Score=51.29  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=60.0

Q ss_pred             CCcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .+++.|+++...  ...+ |..+...++|++|+|.++.+...|.. +..+++|++|+|.+..+..- ....+..++.|+.
T Consensus        33 ~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence            567777776544  2334 44556779999999999988777753 46899999999998877321 1234667899999


Q ss_pred             EEEEeeec
Q 046658          186 LSVHAYFD  193 (413)
Q Consensus       186 L~l~~~~~  193 (413)
                      |.+.++..
T Consensus       110 L~L~~N~~  117 (174)
T 2r9u_A          110 IYLYNNPW  117 (174)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCc
Confidence            99988876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.81  E-value=0.00012  Score=69.08  Aligned_cols=158  Identities=13%  Similarity=0.081  Sum_probs=77.6

Q ss_pred             CcceEEeeecCCCCcccHHHHHHHHHh---CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-Cc----
Q 046658           81 NIDSFCLHCSRPIDLSSVNFWLSSALM---QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VG----  152 (413)
Q Consensus        81 ~l~~l~l~~~~~~~~~~~~~wl~~a~~---~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~----  152 (413)
                      .++.+.+.... ....... .+..+..   ..+++|+++.+.-....+......+++|++|+|++|.+.+... ..    
T Consensus        73 ~L~~L~Ls~n~-l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           73 SLRQLNLAGVR-MTPVKCT-VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TCCEEECTTSC-CCHHHHH-HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hCCEEEecCCC-CCHHHHH-HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            36777766533 2222122 2222222   4677777764432222222222223567788887775433211 00    


Q ss_pred             -ccCCcccEEEeeeeEeChhh---HHHHhccCCccceEEEEeeec-CCCCcce--EEEecCccceeEEEeeecCCCCCCC
Q 046658          153 -TCFPTMKVLHMQLQNLDNSL---TEKMFSACPCLEELSVHAYFD-ADDSRTN--FIIASSTLKHFTLTVVIDTDNHFSE  225 (413)
Q Consensus       153 -~~~~~L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~~~~-~~~~~~~--~~i~~~~L~~L~i~~~~~~~~~~~~  225 (413)
                       ...++|++|+|.++.+++..   +...+..++.|++|+|.+|.. ..++...  .-...++|+.|.+.     +|....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls-----~N~i~~  225 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA-----YNGAGD  225 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC-----SSCCCH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC-----CCCCCH
Confidence             23567888888877774433   344456677788888777765 1111110  00123567777777     665431


Q ss_pred             Ccc----eEEEecCceeEEEEeec
Q 046658          226 IDH----TVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       226 ~~~----~~~~~~P~L~~L~~~~~  245 (413)
                      ...    ......|+|++|+++++
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCC
Confidence            100    00012366777766664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.60  E-value=0.0071  Score=49.86  Aligned_cols=83  Identities=18%  Similarity=0.130  Sum_probs=58.2

Q ss_pred             CCcEEEEEEECcceeeec-CccccccccccEEEeCCccccccCCC-cccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQL-LETIYTSTTLEVLKLDSDCVINAPCV-GTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      ..++.|+++...  ...+ |..+...++|++|+|.++.+...++. +..+++|++|+|.+..+..- ....+..++.|+.
T Consensus        30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence            456666666443  2334 34455678999999999887777653 46889999999998877321 1234567889999


Q ss_pred             EEEEeeec
Q 046658          186 LSVHAYFD  193 (413)
Q Consensus       186 L~l~~~~~  193 (413)
                      |.+.++..
T Consensus       107 L~L~~N~~  114 (170)
T 3g39_A          107 IWLLNNPW  114 (170)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCC
Confidence            99988876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.56  E-value=0.0043  Score=57.52  Aligned_cols=88  Identities=13%  Similarity=0.095  Sum_probs=50.4

Q ss_pred             eecCccccccccccEEEeCC-ccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658          123 VQLLETIYTSTTLEVLKLDS-DCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN  200 (413)
Q Consensus       123 ~~lp~~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~  200 (413)
                      ..+|. +...++|+.|+|.+ +.+...++ .+.++++|++|+|++..+..- ....+..++.|+.|+|.++.. ..+.. 
T Consensus        22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~-   97 (347)
T 2ifg_A           22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL-ESLSW-   97 (347)
T ss_dssp             TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC-SCCCS-
T ss_pred             CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc-ceeCH-
Confidence            34666 66667777777775 65555542 355677777777777765221 122345677777777777765 22211 


Q ss_pred             EEEecCccceeEEE
Q 046658          201 FIIASSTLKHFTLT  214 (413)
Q Consensus       201 ~~i~~~~L~~L~i~  214 (413)
                      -......|+.|.+.
T Consensus        98 ~~~~~~~L~~l~l~  111 (347)
T 2ifg_A           98 KTVQGLSLQELVLS  111 (347)
T ss_dssp             TTTCSCCCCEEECC
T ss_pred             HHcccCCceEEEee
Confidence            00111236677766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.58  E-value=0.016  Score=48.53  Aligned_cols=62  Identities=19%  Similarity=0.214  Sum_probs=27.5

Q ss_pred             ccccccEEEeCCccccccC-----CCcccCCcccEEEe--eeeEeChhh---HHHHhccCCccceEEEEeee
Q 046658          131 TSTTLEVLKLDSDCVINAP-----CVGTCFPTMKVLHM--QLQNLDNSL---TEKMFSACPCLEELSVHAYF  192 (413)
Q Consensus       131 ~~~~L~~L~L~~~~~~~~~-----~~~~~~~~L~~L~L--~~~~~~~~~---l~~l~~~cp~Le~L~l~~~~  192 (413)
                      ..++|++|+|.+|.+.+..     ......++|++|+|  .+..+++..   +...+..++.|++|.+.+|.
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            3445555555554332210     02223445555555  444443332   33334445555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.12  E-value=0.017  Score=54.75  Aligned_cols=36  Identities=11%  Similarity=0.029  Sum_probs=16.7

Q ss_pred             CCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEec
Q 046658          282 CPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVD  319 (413)
Q Consensus       282 ~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~  319 (413)
                      +..+.+|+.+.+...-...  -...+..|++|+++.|.
T Consensus       296 F~~c~~L~~l~l~~~i~~I--~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          296 LEGCPKLARFEIPESIRIL--GQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             TTTCTTCCEECCCTTCCEE--CTTTTTTCCSCCEEEEC
T ss_pred             hhCCccCCeEEeCCceEEE--hhhhhcCCCCccEEEEC
Confidence            3345556655554211100  11234566667666663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.01  E-value=0.032  Score=49.60  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=16.0

Q ss_pred             cccccccEEEeCCccccccCCCcccCC--cccEEEeeeeEe
Q 046658          130 YTSTTLEVLKLDSDCVINAPCVGTCFP--TMKVLHMQLQNL  168 (413)
Q Consensus       130 ~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~  168 (413)
                      ..+++|+.|+|+++.+.+.. ....+.  +|++|+|.+..+
T Consensus       193 ~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          193 QKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred             hhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence            34455555555554433321 122222  455555554444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=92.95  E-value=0.052  Score=50.07  Aligned_cols=82  Identities=15%  Similarity=0.092  Sum_probs=51.5

Q ss_pred             CCcEEEEEEE-CcceeeecC-ccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658          108 QSVRELQLYL-GQQNRVQLL-ETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE  184 (413)
Q Consensus       108 ~~v~~L~l~~-~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  184 (413)
                      .++++|+++. ..  ...+| ..+..+++|+.|+|+++.+...++ .+.++++|++|+|.+..++.- -..++...+ |+
T Consensus        31 ~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~  106 (347)
T 2ifg_A           31 ENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQ  106 (347)
T ss_dssp             SCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CC
T ss_pred             CCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ce
Confidence            3567777763 33  23344 345567888888888887666654 356788888888888776311 112233333 88


Q ss_pred             eEEEEeeec
Q 046658          185 ELSVHAYFD  193 (413)
Q Consensus       185 ~L~l~~~~~  193 (413)
                      .|.|.++..
T Consensus       107 ~l~l~~N~~  115 (347)
T 2ifg_A          107 ELVLSGNPL  115 (347)
T ss_dssp             EEECCSSCC
T ss_pred             EEEeeCCCc
Confidence            888877765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=91.26  E-value=0.2  Score=45.82  Aligned_cols=33  Identities=9%  Similarity=0.025  Sum_probs=16.1

Q ss_pred             cccccEEEeCCccccccCC-CcccCCcccEEEee
Q 046658          132 STTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQ  164 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~  164 (413)
                      |++|++++|.++.....+. .+.+|++|++|+|.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence            4555555555543333332 34445555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=89.31  E-value=0.29  Score=46.28  Aligned_cols=185  Identities=12%  Similarity=0.161  Sum_probs=101.2

Q ss_pred             CCcEEEEEEECcceeeecCc-cccccccccEEEeCCccccccCCCcccCCcccEEEeeee-E-eChhhHHHHhccCCccc
Q 046658          108 QSVRELQLYLGQQNRVQLLE-TIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQ-N-LDNSLTEKMFSACPCLE  184 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~-~-~~~~~l~~l~~~cp~Le  184 (413)
                      .+++++.+..   ....++. .+..|++|+.+.|..+.....+..+..+.+|+.+.|... . ++.    ..+.+|+.|+
T Consensus       157 ~~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~  229 (401)
T 4fdw_A          157 STVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLK  229 (401)
T ss_dssp             CCCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCC
T ss_pred             CCceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCC
Confidence            3566666542   1233443 345689999999987666556544445788998888632 1 133    3457799999


Q ss_pred             eEEEEeeec--CCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeeccc--------ceeeeec
Q 046658          185 ELSVHAYFD--ADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRL--------GSYVLEE  254 (413)
Q Consensus       185 ~L~l~~~~~--~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~--------~~~~~~~  254 (413)
                      .+.+...-.  +...     ....+|+.+.+.     +.-..-+ ......+++|+.+.+.+...        +...+.+
T Consensus       230 ~l~l~~~l~~I~~~a-----F~~~~L~~i~lp-----~~i~~I~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~  298 (401)
T 4fdw_A          230 TIEIPENVSTIGQEA-----FRESGITTVKLP-----NGVTNIA-SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG  298 (401)
T ss_dssp             CEECCTTCCEECTTT-----TTTCCCSEEEEE-----TTCCEEC-TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred             EEecCCCccCccccc-----cccCCccEEEeC-----CCccEEC-hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence            998865321  1100     112467777775     3221100 01112467888888766321        2334566


Q ss_pred             CCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          255 MHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       255 ~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      +++|+.+.+.-.       +.......+..+.+|+.+.|.......  -...+..| +|+++.+..
T Consensus       299 c~~L~~l~l~~~-------i~~I~~~aF~~c~~L~~l~lp~~l~~I--~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          299 CPKLARFEIPES-------IRILGQGLLGGNRKVTQLTIPANVTQI--NFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             CTTCCEECCCTT-------CCEECTTTTTTCCSCCEEEECTTCCEE--CTTSSSSS-CCCEEEECC
T ss_pred             CccCCeEEeCCc-------eEEEhhhhhcCCCCccEEEECccccEE--cHHhCCCC-CCCEEEEcC
Confidence            777777655210       000011234466778888874321111  11235677 888888876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=88.93  E-value=0.16  Score=45.02  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=19.1

Q ss_pred             cCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec
Q 046658          154 CFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       154 ~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      .+|+|++|+|++..+ +-..+..++..+|.|+.|.|.++..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i  208 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  208 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence            345555555555544 2233334444555555555555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d1gefa_	120	c.52.1.18 (A:) Archaeal Holliday junction resolvas	3e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	5e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.001

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 5  ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANLSFDDRLCLRPPASAYVVMP 64
          I+ LP  I  +I ++L  ++ + +  +S+ W  +     +L    +L +      +V   
Sbjct: 6  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW--KKLLIS---ENFVSPK 60

Query: 65 GFVDFVQTVLLRTHP 79
          GF      +  +   
Sbjct: 61 GFNSLNLKLSQKYPK 75

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 4  RISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHV 38
           IS LP  +   ++SFL  K+ +  +   R W+ +
Sbjct: 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.03
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.97
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.75
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.65
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.31
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.3
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.2
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.2
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.11
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.1
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.08
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.96
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.82
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.76
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.65
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.51
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.21
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.05
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.51
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.3
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	92.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	92.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	90.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	88.59
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	87.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.72

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.5e-13  Score=122.11  Aligned_cols=151  Identities=15%  Similarity=0.165  Sum_probs=87.0

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCcccccc-CCCcccCCcccEEEeeeeEe-ChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINA-PCVGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~  185 (413)
                      ..+++++++........++..+..|++|++|+|.+|...+. +.....+++|++|+|.++.. ++..+..++.+||.|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            35677776543322233444455678888888888754321 11345678888888888754 77778888888888888


Q ss_pred             EEEEeeec-CC-CCcceEEEecCccceeEEEeeecCCCCCC-C--CcceEEEecCceeEEEEeeccc----ceeeeecCC
Q 046658          186 LSVHAYFD-AD-DSRTNFIIASSTLKHFTLTVVIDTDNHFS-E--IDHTVMLKAPNLQCLHIIADRL----GSYVLEEMH  256 (413)
Q Consensus       186 L~l~~~~~-~~-~~~~~~~i~~~~L~~L~i~~~~~~~~~~~-~--~~~~~~~~~P~L~~L~~~~~~~----~~~~~~~~~  256 (413)
                      |.+.+|.. .+ .+...+...+++|++|.+.     +|... .  +...+.-.+|+|++|+++++..    +...+..++
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLS-----GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECC-----SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccccccccccccchhhhcccccccchhhhc-----ccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            88888755 11 1111011124678888887     76432 1  1111223467777777776422    122344455


Q ss_pred             CceEEEE
Q 046658          257 CLHEAVV  263 (413)
Q Consensus       257 ~L~~~~i  263 (413)
                      +|+.+.+
T Consensus       201 ~L~~L~L  207 (284)
T d2astb2         201 YLQHLSL  207 (284)
T ss_dssp             TCCEEEC
T ss_pred             cCCEEEC
Confidence            5555444

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.7e-10  Score=69.96  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             CCCCChHHHHHHhcCCCcccchhhcccchhhHHHHh
Q 046658            5 ISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWT   40 (413)
Q Consensus         5 is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~   40 (413)
                      ++.||+|++.+||++||.+|.++++.|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999998753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.3e-10  Score=100.55  Aligned_cols=60  Identities=8%  Similarity=0.124  Sum_probs=26.8

Q ss_pred             ccccEEEeCCccccc--cCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          133 TTLEVLKLDSDCVIN--APCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ..|++|+|++|...+  +......+++|++|+|.++.+++..+..+ ..||+|++|.+.+|..
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~  107 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSG  107 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBS
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCcccccccc
Confidence            445555555443221  11123345555555555554444433332 3445555555555443

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.2e-09  Score=77.83  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=35.9

Q ss_pred             CccCCCCChHHHHHHhcCCCcccchhhcccchhhHHHH
Q 046658            2 GYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVW   39 (413)
Q Consensus         2 ~D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~   39 (413)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+.+.
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999754

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=2.4e-09  Score=79.34  Aligned_cols=44  Identities=20%  Similarity=0.355  Sum_probs=39.0

Q ss_pred             CccCCCCChHHHHHHhcCCCcccchhhcccchhhHHHHhccCee
Q 046658            2 GYRISDLPDAILGRIVSFLPTKNTVATSVLSRRWKHVWTSLANL   45 (413)
Q Consensus         2 ~D~is~LPd~lL~~Ils~L~~~d~~r~s~lSrrWr~l~~~~~~L   45 (413)
                      .|.|+.||+|++.+||++|+.+|.++++.|||+|+.+...-+.|
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            48899999999999999999999999999999999876554433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=2.9e-07  Score=76.99  Aligned_cols=57  Identities=7%  Similarity=0.040  Sum_probs=27.2

Q ss_pred             ccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          133 TTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      +++++|.+.++....++ +...+++|++|+|+++.+++-  .. +.++|.|+.|.+.++..
T Consensus        40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCC
T ss_pred             cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCc--cc-ccCCccccccccccccc
Confidence            44555555555444433 344455555555555544211  11 34555555555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=4.7e-07  Score=77.36  Aligned_cols=163  Identities=15%  Similarity=0.127  Sum_probs=70.4

Q ss_pred             ccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeE
Q 046658          133 TTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFT  212 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~  212 (413)
                      .+|+.|.+.+|.+.+++ +...+++|++|++.+..+.+-  .. +..++.|+.|.+.++.. .++.. + ...++|+.+.
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~~-~~i~~-l-~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPL-KNVSA-I-AGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCC-SCCGG-G-TTCTTCCEEE
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecc--cc-ccccccccccccccccc-ccccc-c-cccccccccc
Confidence            45555555555444443 344555555555555544211  00 34455555555555443 22222 1 1234455555


Q ss_pred             EEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEE
Q 046658          213 LTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFL  291 (413)
Q Consensus       213 i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L  291 (413)
                      +.     ++.....  ......+.+..+.+.+.... ...+..+++|+.+.+....      +.  ....+..+++|++|
T Consensus       114 l~-----~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~------~~--~~~~l~~l~~L~~L  178 (227)
T d1h6ua2         114 LT-----STQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ------VS--DLTPLANLSKLTTL  178 (227)
T ss_dssp             CT-----TSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC------CC--CCGGGTTCTTCCEE
T ss_pred             cc-----ccccccc--chhccccchhhhhchhhhhchhhhhccccccccccccccc------cc--cchhhcccccceec
Confidence            54     4432210  00112344444444332221 2223444445444331100      00  01113355667777


Q ss_pred             EEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          292 EVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       292 ~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      .++.+...  .+. .+..+|+|+.|++..
T Consensus       179 ~Ls~n~l~--~l~-~l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         179 KADDNKIS--DIS-PLASLPNLIEVHLKN  204 (227)
T ss_dssp             ECCSSCCC--CCG-GGGGCTTCCEEECTT
T ss_pred             ccCCCccC--CCh-hhcCCCCCCEEECcC
Confidence            77665422  111 156777777777766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1e-07  Score=83.82  Aligned_cols=85  Identities=11%  Similarity=0.103  Sum_probs=44.7

Q ss_pred             eecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE
Q 046658          123 VQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF  201 (413)
Q Consensus       123 ~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~  201 (413)
                      ..+|..+.  ++|++|+|+++.+...+. .+.++++|++|+|.+..++.  +. ....+|.|+.|.+.++.. ..... .
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l-~~~~~-~   95 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQL-QSLPL-L   95 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCC-SSCCC-C
T ss_pred             CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccccc-ccccc-c
Confidence            34555443  457777777765554442 34566777777777665521  11 124566777777766654 11111 1


Q ss_pred             EEecCccceeEEE
Q 046658          202 IIASSTLKHFTLT  214 (413)
Q Consensus       202 ~i~~~~L~~L~i~  214 (413)
                      ....++|+.|.+.
T Consensus        96 ~~~l~~L~~L~l~  108 (266)
T d1p9ag_          96 GQTLPALTVLDVS  108 (266)
T ss_dssp             TTTCTTCCEEECC
T ss_pred             ccccccccccccc
Confidence            1122456666665

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=8.8e-08  Score=72.96  Aligned_cols=38  Identities=32%  Similarity=0.513  Sum_probs=34.7

Q ss_pred             CccCCCCC----hHHHHHHhcCCCcccchhhcccchhhHHHH
Q 046658            2 GYRISDLP----DAILGRIVSFLPTKNTVATSVLSRRWKHVW   39 (413)
Q Consensus         2 ~D~is~LP----d~lL~~Ils~L~~~d~~r~s~lSrrWr~l~   39 (413)
                      -|.|+.||    |||+.+|||||+.+|.++++.|||+|+.+.
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~   49 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVT   49 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            48899999    599999999999999999999999999753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.11  E-value=1.4e-06  Score=74.35  Aligned_cols=185  Identities=15%  Similarity=0.121  Sum_probs=122.5

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .++++|.+....  ...++ .+..+++|++|++.++...+.+ ....+++|+++++.++.++.  +.. +..++.|+.|.
T Consensus        41 ~~L~~L~l~~~~--i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEE
T ss_pred             CCcCEEECCCCC--CCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccc--ccc-ccccccccccc
Confidence            567777776544  23443 4667899999999998776665 57889999999999887632  222 56789999999


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEee
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHIS  266 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~~  266 (413)
                      +.+|.. .+...  ....+.++.+.+.     ++.....  .....+++|+.|.+.++... ...+.++++|+++++...
T Consensus       114 l~~~~~-~~~~~--~~~~~~~~~l~~~-----~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         114 LTSTQI-TDVTP--LAGLSNLQVLYLD-----LNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN  183 (227)
T ss_dssp             CTTSCC-CCCGG--GTTCTTCCEEECC-----SSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             cccccc-cccch--hccccchhhhhch-----hhhhchh--hhhccccccccccccccccccchhhcccccceecccCCC
Confidence            988876 32322  1234677777777     6554321  11235788999998885443 334678899988776321


Q ss_pred             cceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          267 YAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       267 ~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      .      +..  ...+..+++|++|.++.+...  .+. -++.+|+|+.|.+..
T Consensus       184 ~------l~~--l~~l~~l~~L~~L~Ls~N~lt--~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         184 K------ISD--ISPLASLPNLIEVHLKNNQIS--DVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             C------CCC--CGGGGGCTTCCEEECTTSCCC--BCG-GGTTCTTCCEEEEEE
T ss_pred             c------cCC--ChhhcCCCCCCEEECcCCcCC--CCc-ccccCCCCCEEEeeC
Confidence            0      000  112346789999999887533  222 278999999998853

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.10  E-value=7.7e-07  Score=79.85  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             CcEEEEEEECcc-eeeecCccccccccccEEEeCCc-ccc-ccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          109 SVRELQLYLGQQ-NRVQLLETIYTSTTLEVLKLDSD-CVI-NAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       109 ~v~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~-~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      +|.+|++....- ....+|..+..+++|++|+|.++ ... .+|....++++|++|+|++..+... ....+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcc
Confidence            477777775432 34578888888888999998764 333 4565677888899999888876221 1233456778888


Q ss_pred             EEEEeeecCCCCcceEEEecCccceeEEE
Q 046658          186 LSVHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       186 L~l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      |.+..+.....+.. ..-..++++.+.+.
T Consensus       130 l~l~~N~~~~~~p~-~l~~l~~L~~l~l~  157 (313)
T d1ogqa_         130 LDFSYNALSGTLPP-SISSLPNLVGITFD  157 (313)
T ss_dssp             EECCSSEEESCCCG-GGGGCTTCCEEECC
T ss_pred             cccccccccccCch-hhccCcccceeecc
Confidence            88877655111111 01123566777766

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.08  E-value=1.5e-06  Score=73.13  Aligned_cols=61  Identities=11%  Similarity=0.052  Sum_probs=31.3

Q ss_pred             ccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          129 IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       129 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      +..+++|++|+|.++.+.+.+ ....+++|++|++.++.+++  +. -+..+|.|+.|.+.+|..
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCC
T ss_pred             HhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccc--cc-cccccccccccccccccc
Confidence            344556666666665444443 34455566666665555422  11 134455666666555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.96  E-value=7e-06  Score=75.27  Aligned_cols=57  Identities=7%  Similarity=0.115  Sum_probs=31.0

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEe
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNL  168 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~  168 (413)
                      .++++|+++...  ...+|+ +..+++|++|++.+|.+.+.+ ...++++|+.|++.++.+
T Consensus        66 ~nL~~L~Ls~N~--l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~~~~  122 (384)
T d2omza2          66 NNLTQINFSNNQ--LTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQI  122 (384)
T ss_dssp             TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             CCCCEEeCcCCc--CCCCcc-ccCCccccccccccccccccc-cccccccccccccccccc
Confidence            456666665443  122332 445666666666666555444 355666666666655443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.90  E-value=4.8e-06  Score=69.94  Aligned_cols=164  Identities=15%  Similarity=0.144  Sum_probs=102.4

Q ss_pred             cccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCcccee
Q 046658          132 STTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHF  211 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L  211 (413)
                      ..+|+.|.+.++.....+ +...+++|++|+|+++.+++  +.. ++.++.|+.|.+.+|.. .++.. + ...++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~i-~~l~~-l-~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKV-KDLSS-L-KDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC-CCGGG-G-TTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccC--ccc-cccCccccccccccccc-ccccc-c-ccccccccc
Confidence            357888888888766665 56778899999998887733  222 36788899999888876 33332 1 124678888


Q ss_pred             EEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeE
Q 046658          212 TLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTF  290 (413)
Q Consensus       212 ~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~  290 (413)
                      .+.     ++....-  ......|+|+.+.+.+.... ......+++|+.+.+...  ++    ..  ...+..+++|++
T Consensus       118 ~l~-----~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n--~l----~~--i~~l~~l~~L~~  182 (210)
T d1h6ta2         118 SLE-----HNGISDI--NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN--QI----SD--IVPLAGLTKLQN  182 (210)
T ss_dssp             ECT-----TSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CC----CC--CGGGTTCTTCCE
T ss_pred             ccc-----ccccccc--ccccccccccccccccccccccccccccccccccccccc--cc----cc--cccccCCCCCCE
Confidence            887     7654321  11224577888877764332 233556777777655321  00    00  011346778888


Q ss_pred             EEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          291 LEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       291 L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      |.++.+...  .+. -+..+++|+.|++.+
T Consensus       183 L~Ls~N~i~--~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         183 LYLSKNHIS--DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCC--BCG-GGTTCTTCSEEEEEE
T ss_pred             EECCCCCCC--CCh-hhcCCCCCCEEEccC
Confidence            888776533  233 367889999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.85  E-value=3.8e-06  Score=69.90  Aligned_cols=160  Identities=14%  Similarity=0.142  Sum_probs=99.5

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .++++|.+....-  ..++ .+..+++|++|+|++|...+.+ ...++++|++|++.++.+..-  . -+.+++.|+.|.
T Consensus        40 ~~l~~L~l~~~~i--~~l~-~l~~l~nL~~L~Ls~N~l~~~~-~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGI--KSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI--T-PLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCC--CCcc-ccccCCCcCcCccccccccCcc-cccCCcccccccccccccccc--c-cccccccccccc
Confidence            5677777664432  2232 3556899999999999777666 577899999999998877221  1 157889999999


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEeec
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHISY  267 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~~  267 (413)
                      +.++.. ..... + ...++|+.|.+.     ++....- . .....++|+.|++.++....                  
T Consensus       113 l~~~~~-~~~~~-~-~~l~~L~~L~l~-----~n~l~~~-~-~l~~~~~L~~L~l~~n~l~~------------------  164 (199)
T d2omxa2         113 LFNNQI-TDIDP-L-KNLTNLNRLELS-----SNTISDI-S-ALSGLTSLQQLNFSSNQVTD------------------  164 (199)
T ss_dssp             CCSSCC-CCCGG-G-TTCTTCSEEECC-----SSCCCCC-G-GGTTCTTCSEEECCSSCCCC------------------
T ss_pred             cccccc-ccccc-c-chhhhhHHhhhh-----hhhhccc-c-cccccccccccccccccccC------------------
Confidence            988876 22222 1 124678888887     6643210 1 01234566666665521110                  


Q ss_pred             ceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceE
Q 046658          268 AEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERL  316 (413)
Q Consensus       268 ~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L  316 (413)
                                 ...+..+++|++|.++.+...  .+. .+..+++|++|
T Consensus       165 -----------l~~l~~l~~L~~L~ls~N~i~--~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 -----------LKPLANLTTLERLDISSNKVS--DIS-VLAKLTNLESL  199 (199)
T ss_dssp             -----------CGGGTTCTTCCEEECCSSCCC--CCG-GGGGCTTCSEE
T ss_pred             -----------CccccCCCCCCEEECCCCCCC--CCc-cccCCCCCCcC
Confidence                       011335677888888776532  122 35678888876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=2.2e-06  Score=74.96  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=81.0

Q ss_pred             CCcEEEEEEECcceeeecCcc-ccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      ++++.|+++...  ...+|.. +..+++|++|+|.++.+..++ ....+++|++|+|++..+..  ....+...|.|+.|
T Consensus        31 ~~l~~L~Ls~N~--i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEE
T ss_pred             cCCCEEECcCCc--CCCcCHHHhhccccccccccccccccccc-cccccccccccccccccccc--cccccccccccccc
Confidence            578888877544  3345543 456799999999999776666 45679999999999887732  23346778999999


Q ss_pred             EEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeec
Q 046658          187 SVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~  245 (413)
                      .+.++.. ..+........++++.|.+.     ++....-........++|+.+++.++
T Consensus       106 ~l~~~~~-~~~~~~~~~~l~~l~~L~l~-----~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_         106 DVSFNRL-TSLPLGALRGLGELQELYLK-----GNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             ECCSSCC-CCCCSSTTTTCTTCCEEECT-----TSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccccc-ceeecccccccccccccccc-----ccccceeccccccccccchhcccccc
Confidence            9998876 22211011123567777776     55432111111123466777766663

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-06  Score=70.78  Aligned_cols=106  Identities=15%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccce
Q 046658          131 TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKH  210 (413)
Q Consensus       131 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~  210 (413)
                      ++..|+.|+|.++.+...+....++++|++|+|++..+..  ++ -++.+|.|+.|.+.+|.. ..+...+....++|+.
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccc-cCCCcccccccccccc
Confidence            4456666666666655555334556666666666665521  11 145566666666666655 1111101112456666


Q ss_pred             eEEEeeecCCCCCCCCcc-eEEEecCceeEEEEeec
Q 046658          211 FTLTVVIDTDNHFSEIDH-TVMLKAPNLQCLHIIAD  245 (413)
Q Consensus       211 L~i~~~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~  245 (413)
                      |.+.     ++....-.. ...-..|+|++|.+.++
T Consensus        92 L~L~-----~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          92 LILT-----NNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             EECC-----SCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ceec-----cccccccccccccccccccchhhcCCC
Confidence            6666     554321000 01113466666666664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.76  E-value=1.3e-05  Score=73.39  Aligned_cols=168  Identities=14%  Similarity=0.130  Sum_probs=103.1

Q ss_pred             cccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCc
Q 046658          128 TIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASST  207 (413)
Q Consensus       128 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~  207 (413)
                      ....++.+..+.+.++...+.+ ....+++|++|++.++.+.+-  . .+..++.|+.|.+.+|.. .++.. + ...++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l-~~~~~-~-~~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQI-SNLAP-L-SGLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCC-CCCGG-G-TTCTT
T ss_pred             ccccccccceeeccCCccCCCC-cccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCcc-CCCCc-c-ccccc
Confidence            3455688888988887665554 456678899999988877331  1 256788899998888876 33322 1 13467


Q ss_pred             cceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc-eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCC
Q 046658          208 LKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG-SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFS  286 (413)
Q Consensus       208 L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~-~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~  286 (413)
                      |+.|.+.     ++....- .. ....+.++.+........ ...+..+++++.+.+....      +..  ...++.++
T Consensus       265 L~~L~l~-----~~~l~~~-~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~------l~~--l~~l~~l~  329 (384)
T d2omza2         265 LTELKLG-----ANQISNI-SP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN------ISD--ISPVSSLT  329 (384)
T ss_dssp             CSEEECC-----SSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC------CSC--CGGGGGCT
T ss_pred             CCEeecc-----CcccCCC-Cc-cccccccccccccccccccccccchhcccCeEECCCCC------CCC--CcccccCC
Confidence            8888887     6543210 10 113456666666654332 2235566777666553210      000  01245678


Q ss_pred             CeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          287 ELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       287 ~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      +|++|.+..+...  .+. .+..+|+|+.|++..
T Consensus       330 ~L~~L~L~~n~l~--~l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         330 KLQRLFFANNKVS--DVS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             TCCEEECCSSCCC--CCG-GGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCCCC--CCh-hHcCCCCCCEEECCC
Confidence            8999999887533  122 367899999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.2e-06  Score=73.81  Aligned_cols=16  Identities=13%  Similarity=-0.101  Sum_probs=8.0

Q ss_pred             ccCCccceEEEEeeec
Q 046658          178 SACPCLEELSVHAYFD  193 (413)
Q Consensus       178 ~~cp~Le~L~l~~~~~  193 (413)
                      ++++.|++|.+..+..
T Consensus       102 ~~l~~L~~L~l~~n~~  117 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGL  117 (284)
T ss_dssp             TTCTTCCEEECTTSCC
T ss_pred             cccccCCEEecCCccc
Confidence            4445555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=5.4e-06  Score=63.29  Aligned_cols=62  Identities=18%  Similarity=0.173  Sum_probs=31.5

Q ss_pred             ccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          129 IYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       129 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      +..++.|++|+++++.+...|.....+++|++|++++..++.  +.. +..+|.|+.|.+.++..
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCC
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCcc
Confidence            344555555555555554444334455555555555555521  111 34455555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.7e-06  Score=69.64  Aligned_cols=123  Identities=16%  Similarity=0.115  Sum_probs=73.8

Q ss_pred             CcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEE
Q 046658          109 SVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSV  188 (413)
Q Consensus       109 ~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l  188 (413)
                      .+++|+++...  ...+|.....++.|++|+|+++.+..++ ....+++|++|+++++.+..- -..++..+|.|++|.+
T Consensus        19 ~lr~L~L~~n~--I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYK--IPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSC--CCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCC--CCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCC-Ccccccccccccccee
Confidence            45666666443  2334443345678888888888766665 566788888888888876321 0224466788888888


Q ss_pred             EeeecCCCCcceEE--EecCccceeEEEeeecCCCCCCCCcc---eEEEecCceeEEEE
Q 046658          189 HAYFDADDSRTNFI--IASSTLKHFTLTVVIDTDNHFSEIDH---TVMLKAPNLQCLHI  242 (413)
Q Consensus       189 ~~~~~~~~~~~~~~--i~~~~L~~L~i~~~~~~~~~~~~~~~---~~~~~~P~L~~L~~  242 (413)
                      .+|.. .++.. +.  ...|+|+.|.+.     ++.......   .+....|+|++|+.
T Consensus        95 ~~N~i-~~~~~-l~~l~~l~~L~~L~l~-----~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          95 TNNSL-VELGD-LDPLASLKSLTYLCIL-----RNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CSCCC-CCGGG-GGGGGGCTTCCEEECC-----SSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccc-ccccc-ccccccccccchhhcC-----CCccccccchHHHHHHHCCCcCeeCC
Confidence            88876 33322 11  134778888888     775432110   11224577776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.65  E-value=1.8e-06  Score=78.53  Aligned_cols=99  Identities=14%  Similarity=0.043  Sum_probs=61.3

Q ss_pred             CCCCCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeec-C
Q 046658          282 CPSFSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQ-G  357 (413)
Q Consensus       282 ~p~~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~-~  357 (413)
                      ++.+++|++|++..+...   ...+...+..+|+|++|.+.....+..+.. ...   .....+....|+.+.+.+-. +
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~-~l~---~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA-AVV---DAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH-HHH---HHHHTCSSCCCCEEECCSSCCB
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH-HHH---HHhhhccCCCCCEEECCCCcCC
Confidence            346778999999876643   345777889999999999987432221100 000   00111222568888876543 3


Q ss_pred             CHhHHHHHHHHHhcCCCCceEEEEeec
Q 046658          358 DEDEQRVIEYFLQQCKCLEVMIINCKA  384 (413)
Q Consensus       358 ~~~~~~l~~~ll~~a~~Le~l~i~~~~  384 (413)
                      ......+++.+-.+.+.|+++.+..+.
T Consensus       287 ~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         287 LDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            334455666666788999999876544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.6e-05  Score=69.88  Aligned_cols=219  Identities=11%  Similarity=0.109  Sum_probs=122.6

Q ss_pred             eeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcce
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTN  200 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~  200 (413)
                      ...+|..+.  +++++|.|+++.+..+|. .+.++++|++|++++..+..- .......++.++.|.+.....-..+.. 
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~~-   98 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDP-   98 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCT-
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-ccccccccccccccccccccccccccc-
Confidence            446666544  578999999998777764 467899999999987766221 123446678888887765544011111 


Q ss_pred             EEE-ecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccce---eeeecCCCceEEEEEeecceeEEEecc
Q 046658          201 FII-ASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGS---YVLEEMHCLHEAVVHISYAEWSQAVDQ  276 (413)
Q Consensus       201 ~~i-~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~---~~~~~~~~L~~~~i~~~~~~l~l~~~~  276 (413)
                      ... ..++|+.|.+.     .+.............++|+.+++.+.....   ..+...+.|+.+.+..  +.+    ..
T Consensus        99 ~~~~~l~~L~~L~l~-----~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~--N~l----~~  167 (284)
T d1ozna_          99 ATFHGLGRLHTLHLD-----RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG--NRI----SS  167 (284)
T ss_dssp             TTTTTCTTCCEEECT-----TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCC----CE
T ss_pred             hhhcccccCCEEecC-----CcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc--Ccc----cc
Confidence            011 23678988888     665432111122245678888888754432   2245667777665522  111    00


Q ss_pred             cCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEe--
Q 046658          277 CYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIR--  354 (413)
Q Consensus       277 ~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~--  354 (413)
                      .....+..+++|+.|.+..+... ...+..+..+|+|+.|++.........        ......+  .+|+.+.+.+  
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~i~~~~--------~~~~~~~--~~L~~L~l~~N~  236 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALP--------TEALAPL--RALQYLRLNDNP  236 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCC--------HHHHTTC--TTCCEEECCSSC
T ss_pred             cchhhhccccccchhhhhhcccc-ccChhHhhhhhhccccccccccccccc--------ccccccc--cccCEEEecCCC
Confidence            11123456667777777765433 112345677888888888763221110        0011122  5678877764  


Q ss_pred             ecCCHhHHHHHH
Q 046658          355 VQGDEDEQRVIE  366 (413)
Q Consensus       355 ~~~~~~~~~l~~  366 (413)
                      +.++.+...+..
T Consensus       237 l~C~C~~~~l~~  248 (284)
T d1ozna_         237 WVCDCRARPLWA  248 (284)
T ss_dssp             EECSGGGHHHHH
T ss_pred             CCCCccchHHHH
Confidence            345554444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.51  E-value=2.7e-05  Score=69.12  Aligned_cols=59  Identities=12%  Similarity=0.098  Sum_probs=28.3

Q ss_pred             ccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeee
Q 046658          133 TTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYF  192 (413)
Q Consensus       133 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~  192 (413)
                      +++++|+|.++.+..+|. .+.++++|++|++.++.+..- ....+..++.|+.|.+.++.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc
Confidence            345555555555444442 234555555555555544210 01223445555555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.36  E-value=4.7e-05  Score=67.41  Aligned_cols=170  Identities=13%  Similarity=0.130  Sum_probs=81.8

Q ss_pred             ccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec--CCCCcceEEEecCcc
Q 046658          131 TSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD--ADDSRTNFIIASSTL  208 (413)
Q Consensus       131 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~--~~~~~~~~~i~~~~L  208 (413)
                      .++.|++|++.++.....|  ...++.|+.|.+....+..- -...+..++.+..+....+..  ...... .....++|
T Consensus        77 ~l~~L~~L~l~~n~l~~l~--~~~~~~l~~L~~~~n~l~~l-~~~~~~~~~~~~~l~~~~n~~~~~~~~~~-~~~~l~~L  152 (305)
T d1xkua_          77 PLVKLERLYLSKNQLKELP--EKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKL  152 (305)
T ss_dssp             TCTTCCEEECCSSCCSBCC--SSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTC
T ss_pred             CCCccCEecccCCccCcCc--cchhhhhhhhhccccchhhh-hhhhhhccccccccccccccccccCCCcc-cccccccc
Confidence            3455555555555443333  12234445554444333110 112234455555555444332  000000 00122467


Q ss_pred             ceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccc---eeeeecCCCceEEEEEeecceeEEEecccCcccCCCC
Q 046658          209 KHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLG---SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSF  285 (413)
Q Consensus       209 ~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~---~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~  285 (413)
                      +.+.+.     ++....-...   ..++|+.|++.+....   ...+..++.++.+.+..  +.+.    ......+..+
T Consensus       153 ~~l~l~-----~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~--n~l~----~~~~~~~~~l  218 (305)
T d1xkua_         153 SYIRIA-----DTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF--NSIS----AVDNGSLANT  218 (305)
T ss_dssp             CEEECC-----SSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS--SCCC----EECTTTGGGS
T ss_pred             Cccccc-----cCCccccCcc---cCCccCEEECCCCcCCCCChhHhhcccccccccccc--cccc----cccccccccc
Confidence            777777     6543321111   2578888888774432   23345566666654421  0000    0011224456


Q ss_pred             CCeeEEEEEeCCCChhhHHHHHhcCCCCceEEecc
Q 046658          286 SELTFLEVKLAGSGWRVLPIILHSSPNLERLLVDK  320 (413)
Q Consensus       286 ~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~L~i~~  320 (413)
                      ++|+.|+|..+...  .++.-+..+|+|+.|.++.
T Consensus       219 ~~L~~L~L~~N~L~--~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         219 PHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             TTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCS
T ss_pred             ccceeeeccccccc--ccccccccccCCCEEECCC
Confidence            78888888776532  2333467788999998876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.32  E-value=2.1e-05  Score=59.89  Aligned_cols=100  Identities=16%  Similarity=0.184  Sum_probs=71.3

Q ss_pred             cEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEe
Q 046658          136 EVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTV  215 (413)
Q Consensus       136 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~  215 (413)
                      +.|+|+++....++ ...++++|++|++++..++.  +..-+..++.|+.|.+.++.. ..+.. + ...++|+.|.+. 
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i-~~l~~-~-~~l~~L~~L~l~-   73 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNAL-ENVDG-V-ANLPRLQELLLC-   73 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCC-CCCGG-G-TTCSSCCEEECC-
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccc-cccCc-c-ccccccCeEECC-
Confidence            57899998877777 67899999999999988842  333467899999999999987 44443 1 234789999998 


Q ss_pred             eecCCCCCCCCcc-eEEEecCceeEEEEeecc
Q 046658          216 VIDTDNHFSEIDH-TVMLKAPNLQCLHIIADR  246 (413)
Q Consensus       216 ~~~~~~~~~~~~~-~~~~~~P~L~~L~~~~~~  246 (413)
                          ++....... .....+|+|+.|++.+..
T Consensus        74 ----~N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          74 ----NNRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             ----SSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ----CCccCCCCCchhhcCCCCCCEEECCCCc
Confidence                765432111 112346788888887743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00031  Score=59.60  Aligned_cols=88  Identities=9%  Similarity=0.083  Sum_probs=44.7

Q ss_pred             ecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec-CCCCcceE
Q 046658          124 QLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD-ADDSRTNF  201 (413)
Q Consensus       124 ~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~-~~~~~~~~  201 (413)
                      .+|..++  +++++|+|.++.+...|. .+.++++|++|+|.+..+....-...+.+++.+++|.+..+.. ...... .
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~-~   98 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-A   98 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT-S
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc-c
Confidence            4555443  356777777665555543 2456677777777665432111112244566677776655433 000001 1


Q ss_pred             EEecCccceeEEE
Q 046658          202 IIASSTLKHFTLT  214 (413)
Q Consensus       202 ~i~~~~L~~L~i~  214 (413)
                      ....++|+.|.+.
T Consensus        99 ~~~l~~L~~l~l~  111 (242)
T d1xwdc1          99 FQNLPNLQYLLIS  111 (242)
T ss_dssp             EECCTTCCEEEEE
T ss_pred             ccccccccccccc
Confidence            1234667777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.21  E-value=2.3e-06  Score=71.25  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=55.9

Q ss_pred             eeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceE
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNF  201 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~  201 (413)
                      ...+|..+...++|++|+|+++.+..++ ...++++|++|+|.++.++.  +..+...+|.|+.|.+.++.. ..+.. +
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i-~~l~~-~  111 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI-ASLSG-I  111 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEEC-CCHHH-H
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccc--ccccccccccccccccccccc-ccccc-c
Confidence            3445556666788888888888776665 56778888888888887732  223344456788888888765 22221 0


Q ss_pred             EEecCccceeEEE
Q 046658          202 IIASSTLKHFTLT  214 (413)
Q Consensus       202 ~i~~~~L~~L~i~  214 (413)
                       ...++|+.|.+.
T Consensus       112 -~~l~~L~~L~L~  123 (198)
T d1m9la_         112 -EKLVNLRVLYMS  123 (198)
T ss_dssp             -HHHHHSSEEEES
T ss_pred             -cccccccccccc
Confidence             123456666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.86  E-value=0.00015  Score=64.40  Aligned_cols=223  Identities=13%  Similarity=0.017  Sum_probs=125.5

Q ss_pred             CcceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCccc
Q 046658           81 NIDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMK  159 (413)
Q Consensus        81 ~l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~  159 (413)
                      .|..+.+..........+..-+.  .-..++.|+++......-.+|..+..+++|++|+|+++.+...++ ....+++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~--~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHh--cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            37777776543211111111111  126899999986443344689999999999999999987766543 467789999


Q ss_pred             EEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCc-cceeEEEeeecCCCCCCCCcceEEEecCcee
Q 046658          160 VLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASST-LKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQ  238 (413)
Q Consensus       160 ~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~-L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~  238 (413)
                      .+++....+... +..-+..++.|+.+.+.++.....+.. .....+. ++.+.+.     .+.... .....+....+.
T Consensus       129 ~l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l~~~ip~-~~~~l~~l~~~l~~~-----~n~l~~-~~~~~~~~l~~~  200 (313)
T d1ogqa_         129 TLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTIS-----RNRLTG-KIPPTFANLNLA  200 (313)
T ss_dssp             EEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECC-----SSEEEE-ECCGGGGGCCCS
T ss_pred             cccccccccccc-CchhhccCcccceeecccccccccccc-ccccccccccccccc-----cccccc-cccccccccccc
Confidence            999998766221 233467889999999988765111111 0001122 3444444     332110 000001112233


Q ss_pred             EEEEeecccc---eeeeecCCCceEEEEEeecceeEEEecccCcccCCCCCCeeEEEEEeCCCChhhHHHHHhcCCCCce
Q 046658          239 CLHIIADRLG---SYVLEEMHCLHEAVVHISYAEWSQAVDQCYDNFCPSFSELTFLEVKLAGSGWRVLPIILHSSPNLER  315 (413)
Q Consensus       239 ~L~~~~~~~~---~~~~~~~~~L~~~~i~~~~~~l~l~~~~~~~~~~p~~~~L~~L~l~~~~~~~~~l~~ll~~~p~L~~  315 (413)
                      .+++......   ......+++++.+.+...      .+... ...+..+++|+.|+++.+... ..++.-+.++|+|+.
T Consensus       201 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------~l~~~-~~~~~~~~~L~~L~Ls~N~l~-g~iP~~l~~L~~L~~  272 (313)
T d1ogqa_         201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKN------SLAFD-LGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHS  272 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSS------EECCB-GGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccc------ccccc-ccccccccccccccCccCeec-ccCChHHhCCCCCCE
Confidence            4444432221   233455667766654220      01111 122446678999998775432 235566788999999


Q ss_pred             EEeccc
Q 046658          316 LLVDKE  321 (413)
Q Consensus       316 L~i~~~  321 (413)
                      |++...
T Consensus       273 L~Ls~N  278 (313)
T d1ogqa_         273 LNVSFN  278 (313)
T ss_dssp             EECCSS
T ss_pred             EECcCC
Confidence            999873

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.60  E-value=0.00018  Score=59.01  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             eeecCccccccccccEEEeCCccccc-cC-CCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcc
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDCVIN-AP-CVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRT  199 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~~~~-~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~  199 (413)
                      ...+|..++  +++++|.|.++.+.. .+ ..+.++++|++|+|.+..+..- ....+...+.|++|.+.++.. ..+..
T Consensus        20 L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l-~~l~~   95 (192)
T d1w8aa_          20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEISN   95 (192)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEECS
T ss_pred             cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccc-cccCH
Confidence            445666554  578889998886643 22 2456788889999887766221 123455678888888888765 11111


Q ss_pred             eEEEecCccceeEEE
Q 046658          200 NFIIASSTLKHFTLT  214 (413)
Q Consensus       200 ~~~i~~~~L~~L~i~  214 (413)
                      ......++|+.|.+.
T Consensus        96 ~~F~~l~~L~~L~L~  110 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLY  110 (192)
T ss_dssp             SSSTTCTTCCEEECC
T ss_pred             HHHhCCCcccccccC
Confidence            000112556666666

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0012  Score=55.77  Aligned_cols=84  Identities=15%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             CCcEEEEEEECcceeeecCcc-ccccccccEEEeCCcccccc-CC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccc
Q 046658          108 QSVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINA-PC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLE  184 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le  184 (413)
                      ++++.|+++...  ...+|.. +..+++|++|+|.++..... +. .+.+++++++|.+.....-.......+.++|.|+
T Consensus        29 ~~l~~L~Ls~n~--i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCC--CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcCCc--CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            578888888654  3456664 45689999999999865542 32 4567889999987654221111234467899999


Q ss_pred             eEEEEeeec
Q 046658          185 ELSVHAYFD  193 (413)
Q Consensus       185 ~L~l~~~~~  193 (413)
                      +|.+.++..
T Consensus       107 ~l~l~~~~l  115 (242)
T d1xwdc1         107 YLLISNTGI  115 (242)
T ss_dssp             EEEEESCCC
T ss_pred             ccccchhhh
Confidence            999999866

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.05  E-value=0.00066  Score=55.78  Aligned_cols=100  Identities=12%  Similarity=0.125  Sum_probs=71.0

Q ss_pred             hCCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          107 MQSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       107 ~~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      -.++++|+++...-  ..++ .+..+++|++|+|++|.+..++.....+++|++|++.+..++.  +. -+..++.|+.|
T Consensus        47 L~~L~~L~Ls~n~I--~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEE--SCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HH-HHHHHHHSSEE
T ss_pred             ccccceeECcccCC--CCcc-cccCCccccChhhcccccccccccccccccccccccccccccc--cc-ccccccccccc
Confidence            36788888875542  2344 3667899999999999877776334456789999999998843  22 24567899999


Q ss_pred             EEEeeecCCCCcceEE--EecCccceeEEE
Q 046658          187 SVHAYFDADDSRTNFI--IASSTLKHFTLT  214 (413)
Q Consensus       187 ~l~~~~~~~~~~~~~~--i~~~~L~~L~i~  214 (413)
                      ++.++.. .++.. +.  ...|+|+.|.+.
T Consensus       121 ~L~~N~i-~~~~~-~~~l~~l~~L~~L~L~  148 (198)
T d1m9la_         121 YMSNNKI-TNWGE-IDKLAALDKLEDLLLA  148 (198)
T ss_dssp             EESEEEC-CCHHH-HHHHTTTTTCSEEEEC
T ss_pred             ccccchh-ccccc-cccccCCCccceeecC
Confidence            9999876 33332 11  234789999998

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.03  E-value=0.00062  Score=55.57  Aligned_cols=85  Identities=15%  Similarity=0.070  Sum_probs=57.4

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEEL  186 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L  186 (413)
                      .++++|+++...-....-+..+...++|++|.|.++.....+. .+..+++|++|+|++..+..- -...+.+.+.|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l-~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc-CHHHHhCCCccccc
Confidence            4677777775442111122333457899999999887666553 566789999999998876321 12245778999999


Q ss_pred             EEEeeec
Q 046658          187 SVHAYFD  193 (413)
Q Consensus       187 ~l~~~~~  193 (413)
                      .|.++..
T Consensus       108 ~L~~N~l  114 (192)
T d1w8aa_         108 NLYDNQI  114 (192)
T ss_dssp             ECCSSCC
T ss_pred             ccCCccc
Confidence            9999876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.003  Score=49.42  Aligned_cols=71  Identities=13%  Similarity=0.079  Sum_probs=46.3

Q ss_pred             eeecCccccccccccEEEeCCcc-ccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeec
Q 046658          122 RVQLLETIYTSTTLEVLKLDSDC-VINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       122 ~~~lp~~~~~~~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ....|..+...++|++|.+.++. ...++. .+.++++|+.|+|.+..++.-. ...+...+.|+.|+|.++..
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCCC
Confidence            34556666667788888887653 334432 4566788888888877662210 23456678888888888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.51  E-value=0.006  Score=54.25  Aligned_cols=238  Identities=10%  Similarity=0.094  Sum_probs=122.2

Q ss_pred             ecCccccccccccEEEeCCcccccc-----CCCcccCCcccEEEeeeeEeC------hhh---HHHHhccCCccceEEEE
Q 046658          124 QLLETIYTSTTLEVLKLDSDCVINA-----PCVGTCFPTMKVLHMQLQNLD------NSL---TEKMFSACPCLEELSVH  189 (413)
Q Consensus       124 ~lp~~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L~~~~~~------~~~---l~~l~~~cp~Le~L~l~  189 (413)
                      .+...+....+|+.|+|.++.+-+.     .......++|+.|++.++...      ...   +...+..|+.|++|.+.
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            3344455567888888888744221     113445688888888866541      122   33445668888888888


Q ss_pred             eeec-CCCCcce--EEEecCccceeEEEeeecCCCCCCCCcceEEEecCceeEEEEeecccceeeeecCCCceEEEEEee
Q 046658          190 AYFD-ADDSRTN--FIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLKAPNLQCLHIIADRLGSYVLEEMHCLHEAVVHIS  266 (413)
Q Consensus       190 ~~~~-~~~~~~~--~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~P~L~~L~~~~~~~~~~~~~~~~~L~~~~i~~~  266 (413)
                      +|.. ...+...  .....++|++|.+.     +|.....  ....-+..|..+..      .......+.|+.+.+...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~-----~n~l~~~--~~~~l~~~l~~~~~------~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLH-----NNGLGPQ--AGAKIARALQELAV------NKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECC-----SSCCHHH--HHHHHHHHHHHHHH------HHHHHTCCCCCEEECCSS
T ss_pred             ccccccccccchhhhhcccccchheecc-----ccccccc--cccccccccccccc------ccccccCcccceeecccc
Confidence            8865 1222220  11134677777777     6643210  00000000000000      001123444544433210


Q ss_pred             cceeEEEecccC----cccCCCCCCeeEEEEEeCCCChh----hHHHHHhcCCCCceEEeccccceecccccCCccccCc
Q 046658          267 YAEWSQAVDQCY----DNFCPSFSELTFLEVKLAGSGWR----VLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDC  338 (413)
Q Consensus       267 ~~~l~l~~~~~~----~~~~p~~~~L~~L~l~~~~~~~~----~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~  338 (413)
                      .      +....    ...++.+.+|++|.+..+.....    .+...+..+|+|+.|++.....+..+...  ..  ..
T Consensus       169 ~------i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~--L~--~~  238 (344)
T d2ca6a1         169 R------LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA--LA--IA  238 (344)
T ss_dssp             C------CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH--HH--HH
T ss_pred             c------ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccc--cc--cc
Confidence            0      00000    01123567899999988765532    24556788999999999874332221100  00  11


Q ss_pred             cCcccccceeEEEEEeec-CCHhHHHHHHHHHh-cCCCCceEEEEeeccc
Q 046658          339 VPQCLLQRVKKIEIIRVQ-GDEDEQRVIEYFLQ-QCKCLEVMIINCKALI  386 (413)
Q Consensus       339 ~~~c~~~~L~~v~i~~~~-~~~~~~~l~~~ll~-~a~~Le~l~i~~~~~~  386 (413)
                      ...|  .+|+.+.+.+-. +..+...++..+-+ ..+.|+++.+..+.-.
T Consensus       239 l~~~--~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         239 LKSW--PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGGC--TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccc--ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            1223  678988886554 33445556665543 2467999999886533

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.38  E-value=0.0076  Score=47.57  Aligned_cols=61  Identities=15%  Similarity=0.221  Sum_probs=30.0

Q ss_pred             cccccEEEeCCcccccc--CC---CcccCCcccEEEeeeeEeChhhHHHH---hccCCccceEEEEeee
Q 046658          132 STTLEVLKLDSDCVINA--PC---VGTCFPTMKVLHMQLQNLDNSLTEKM---FSACPCLEELSVHAYF  192 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~--~~---~~~~~~~L~~L~L~~~~~~~~~l~~l---~~~cp~Le~L~l~~~~  192 (413)
                      .++|++|+|++|...+.  ..   .....++|++|+|.++.+++.++..+   +..++.|++|.+.++.
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            34556666655533221  10   12234556666666665544433332   4445566666665554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.0099  Score=54.45  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=70.5

Q ss_pred             cceEEeeecCCCCcccHHHHHHHHHhCCcEEEEEEECcc---eeeecCccccccccccEEEeCCccccccCC--Cc----
Q 046658           82 IDSFCLHCSRPIDLSSVNFWLSSALMQSVRELQLYLGQQ---NRVQLLETIYTSTTLEVLKLDSDCVINAPC--VG----  152 (413)
Q Consensus        82 l~~l~l~~~~~~~~~~~~~wl~~a~~~~v~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~----  152 (413)
                      ++.+.+.+.. .....+..++..  -++++.|.+..+.-   +...+...+..+++|++|+|+++.+.+...  ..    
T Consensus         4 l~~ld~~~~~-i~~~~~~~l~~~--l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           4 IQSLDIQCEE-LSDARWAELLPL--LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEESCC-CCHHHHHHHHHH--HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCEEEeeCCc-CChHHHHHHHHh--CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            6777776543 343444444433  47888888886542   223455556778899999998875532110  11    


Q ss_pred             ccCCcccEEEeeeeEeChhhH---HHHhccCCccceEEEEeeec
Q 046658          153 TCFPTMKVLHMQLQNLDNSLT---EKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       153 ~~~~~L~~L~L~~~~~~~~~l---~~l~~~cp~Le~L~l~~~~~  193 (413)
                      ...++|++|+|.++.+++..+   ...+..++.|++|.+.++..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            123579999999988865544   44567789999999988753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.007  Score=55.55  Aligned_cols=98  Identities=11%  Similarity=0.046  Sum_probs=59.3

Q ss_pred             CCCCCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeecCC
Q 046658          282 CPSFSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQGD  358 (413)
Q Consensus       282 ~p~~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~~~  358 (413)
                      +|.+.+++.|.|..|...   ...+...++.+|+|+.|++.....++.+     +............+|+++.+.+-.-.
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~-----~~~l~~~l~~~~~~L~~L~L~~n~it   97 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG-----VHCVLQGLQTPSCKIQKLSLQNCCLT   97 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH-----HHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHH-----HHHHHHHHhcCCCCCCEEECCCCCcc
Confidence            456778899999988754   4567778899999999998773322111     00000000001135777777654433


Q ss_pred             HhHHHHHHHHHhcCCCCceEEEEeec
Q 046658          359 EDEQRVIEYFLQQCKCLEVMIINCKA  384 (413)
Q Consensus       359 ~~~~~l~~~ll~~a~~Le~l~i~~~~  384 (413)
                      ......+...+...+.|+++.+....
T Consensus        98 ~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          98 GAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             GGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             ccccccccchhhcccccccccccccc
Confidence            33444555566777888888876543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.12  E-value=0.0099  Score=46.87  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=18.1

Q ss_pred             CCcccEEEeeeeEeChhh---HHHHhccCCccceEEEEeeec
Q 046658          155 FPTMKVLHMQLQNLDNSL---TEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       155 ~~~L~~L~L~~~~~~~~~---l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      .++|++|+|.++.+++..   +...+..++.|++|.+.+|..
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            344555555555443322   233344455555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.028  Score=43.56  Aligned_cols=83  Identities=16%  Similarity=0.060  Sum_probs=53.3

Q ss_pred             CCcEEEEEEECcceeeecCcc-ccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeChhhHHHHhccCCccce
Q 046658          108 QSVRELQLYLGQQNRVQLLET-IYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEE  185 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~  185 (413)
                      .++++|.+..... ...++.. +...+.|+.|.|.++.+..+++ .+.++++|++|+|++..++.-. ..++. .+.|+.
T Consensus        31 ~~l~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~-~~~l~~  107 (156)
T d2ifga3          31 ENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQ-GLSLQE  107 (156)
T ss_dssp             SCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTC-SCCCCE
T ss_pred             cccCeeecCCCcc-ccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccC-hhhhc-cccccc
Confidence            4566666643221 2334433 4457899999999987777654 4678999999999988772100 11122 346888


Q ss_pred             EEEEeeec
Q 046658          186 LSVHAYFD  193 (413)
Q Consensus       186 L~l~~~~~  193 (413)
                      |.|.++..
T Consensus       108 L~L~~Np~  115 (156)
T d2ifga3         108 LVLSGNPL  115 (156)
T ss_dssp             EECCSSCC
T ss_pred             cccCCCcc
Confidence            88887765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=92.11  E-value=0.035  Score=48.63  Aligned_cols=91  Identities=24%  Similarity=0.195  Sum_probs=50.9

Q ss_pred             CCcEEEEEEECcceeeecCccccccccccEEEeCCccccccCCCcccCCcccEEEeeeeEeChhhHHHHhccCCccceEE
Q 046658          108 QSVRELQLYLGQQNRVQLLETIYTSTTLEVLKLDSDCVINAPCVGTCFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELS  187 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~  187 (413)
                      .++++|+++...  ...+|..   .++|++|.|+++.+..+|   ..+.+|++|++.+..++.  +..   --+.|++|+
T Consensus        38 ~~l~~LdLs~~~--L~~lp~~---~~~L~~L~Ls~N~l~~lp---~~~~~L~~L~l~~n~l~~--l~~---lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLG--LSSLPEL---PPHLESLVASCNSLTELP---ELPQSLKSLLVDNNNLKA--LSD---LPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSC--CSCCCSC---CTTCSEEECCSSCCSSCC---CCCTTCCEEECCSSCCSC--CCS---CCTTCCEEE
T ss_pred             cCCCEEEeCCCC--CCCCCCC---CCCCCEEECCCCCCcccc---cchhhhhhhhhhhcccch--hhh---hcccccccc
Confidence            456666665433  2345643   357788888777665555   224577777777665421  111   124577777


Q ss_pred             EEeeecCCCCcceEEEecCccceeEEE
Q 046658          188 VHAYFDADDSRTNFIIASSTLKHFTLT  214 (413)
Q Consensus       188 l~~~~~~~~~~~~~~i~~~~L~~L~i~  214 (413)
                      +.++.. ..+.. . ...++|+.|.+.
T Consensus       105 L~~n~l-~~lp~-~-~~l~~L~~L~l~  128 (353)
T d1jl5a_         105 VSNNQL-EKLPE-L-QNSSFLKIIDVD  128 (353)
T ss_dssp             CCSSCC-SSCCC-C-TTCTTCCEEECC
T ss_pred             cccccc-ccccc-h-hhhccceeeccc
Confidence            777765 22322 1 123567777776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.0015  Score=51.68  Aligned_cols=60  Identities=20%  Similarity=0.172  Sum_probs=31.0

Q ss_pred             cccccEEEeCCccccccCC---CcccCCcccEEEeeeeEe-ChhhHHHHhccCCccceEEEEeeec
Q 046658          132 STTLEVLKLDSDCVINAPC---VGTCFPTMKVLHMQLQNL-DNSLTEKMFSACPCLEELSVHAYFD  193 (413)
Q Consensus       132 ~~~L~~L~L~~~~~~~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~~~~  193 (413)
                      +++|++|+|++|...++++   ....+++|+.|+|++..+ +-..+..+  ..+.|++|.+.++..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~Npl  127 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTSTT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCCCCc
Confidence            5666666666665544331   233466666666666665 33333322  233466666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.03  E-value=0.1  Score=40.44  Aligned_cols=111  Identities=14%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             CCcceEEeeecCCCCcccHHHHHHHHHh-CCcEEEEEEECcc---eeeecCccccccccccEEEeCCccccccC-----C
Q 046658           80 GNIDSFCLHCSRPIDLSSVNFWLSSALM-QSVRELQLYLGQQ---NRVQLLETIYTSTTLEVLKLDSDCVINAP-----C  150 (413)
Q Consensus        80 ~~l~~l~l~~~~~~~~~~~~~wl~~a~~-~~v~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~~~~~~-----~  150 (413)
                      +.++.+.+......+...+..+...... ..+++|+++...-   ....+-..+...++++.+.+.+|...+..     .
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4578877764333444444444443322 3466666553321   11222223333456666666655332110     0


Q ss_pred             CcccCCcccEEEeee--eEeChhh---HHHHhccCCccceEEEEe
Q 046658          151 VGTCFPTMKVLHMQL--QNLDNSL---TEKMFSACPCLEELSVHA  190 (413)
Q Consensus       151 ~~~~~~~L~~L~L~~--~~~~~~~---l~~l~~~cp~Le~L~l~~  190 (413)
                      .....++|+.++|..  ..++++.   +...+..|+.|++|.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            234455666555542  2333433   344445666666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=88.59  E-value=0.17  Score=43.93  Aligned_cols=70  Identities=17%  Similarity=0.144  Sum_probs=42.5

Q ss_pred             cCCcccEEEeeeeEeChhhHHHHhccCCccceEEEEeeecCCCCcceEEEecCccceeEEEeeecCCCCCCCCcceEEEe
Q 046658          154 CFPTMKVLHMQLQNLDNSLTEKMFSACPCLEELSVHAYFDADDSRTNFIIASSTLKHFTLTVVIDTDNHFSEIDHTVMLK  233 (413)
Q Consensus       154 ~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~~~~~~~~~~~~~i~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~  233 (413)
                      .+++|++|+|+++.+..     +-...|+|+.|.+.+|.. ..+..    ..++|++|.+.     +|.... ..   --
T Consensus       282 ~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~L-~~l~~----~~~~L~~L~L~-----~N~L~~-lp---~~  342 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHL-AEVPE----LPQNLKQLHVE-----YNPLRE-FP---DI  342 (353)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC-SCCCC----CCTTCCEEECC-----SSCCSS-CC---CC
T ss_pred             cCCCCCEEECCCCccCc-----cccccCCCCEEECCCCcC-Ccccc----ccCCCCEEECc-----CCcCCC-CC---cc
Confidence            46788888888776521     113467888888887765 33332    24578888888     776432 11   11


Q ss_pred             cCceeEEEE
Q 046658          234 APNLQCLHI  242 (413)
Q Consensus       234 ~P~L~~L~~  242 (413)
                      .+.|+.|.+
T Consensus       343 ~~~L~~L~~  351 (353)
T d1jl5a_         343 PESVEDLRM  351 (353)
T ss_dssp             CTTCCEEEC
T ss_pred             ccccCeeEC
Confidence            235777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.0095  Score=46.72  Aligned_cols=80  Identities=14%  Similarity=0.143  Sum_probs=55.6

Q ss_pred             CCcEEEEEEECcceee-ecCccccccccccEEEeCCccccccCC-CcccCCcccEEEeeeeEeC------hhhHHHHhcc
Q 046658          108 QSVRELQLYLGQQNRV-QLLETIYTSTTLEVLKLDSDCVINAPC-VGTCFPTMKVLHMQLQNLD------NSLTEKMFSA  179 (413)
Q Consensus       108 ~~v~~L~l~~~~~~~~-~lp~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~------~~~l~~l~~~  179 (413)
                      ..++.|+++...-... .++..+..+++|+.|+|+++.+.+.+. ......+|++|++.+..+.      ......++..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            4677777775543222 234445568999999999998777653 2335667999999988762      1345677889


Q ss_pred             CCccceEE
Q 046658          180 CPCLEELS  187 (413)
Q Consensus       180 cp~Le~L~  187 (413)
                      +|.|+.|+
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            99999885

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.72  E-value=0.12  Score=40.16  Aligned_cols=96  Identities=11%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             CCCCCeeEEEEEeCCCC---hhhHHHHHhcCCCCceEEeccccceecccccCCccccCccCcccccceeEEEEEeec---
Q 046658          283 PSFSELTFLEVKLAGSG---WRVLPIILHSSPNLERLLVDKECWFEITKEQFGWIESDCVPQCLLQRVKKIEIIRVQ---  356 (413)
Q Consensus       283 p~~~~L~~L~l~~~~~~---~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~w~~~~~~~~c~~~~L~~v~i~~~~---  356 (413)
                      ...++|++|+++.+...   ...+...++..+.++.|.+.....+..+..  ...  .....  ..+|+.+.+....   
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~--~l~--~~l~~--~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL--ALV--EALQS--NTSLIELRIDNQSQPL  116 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH--HHH--HGGGG--CSSCCEEECCCCSSCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH--HHH--HHHHh--CccccEEeeccCCCcC
Confidence            45668999999887654   556778889999999999887433222100  000  01112  2678888775332   


Q ss_pred             CCHhHHHHHHHHHhcCCCCceEEEEeecc
Q 046658          357 GDEDEQRVIEYFLQQCKCLEVMIINCKAL  385 (413)
Q Consensus       357 ~~~~~~~l~~~ll~~a~~Le~l~i~~~~~  385 (413)
                      |......+++. ++..+.|+++.+.+...
T Consensus       117 ~~~~~~~La~~-L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         117 GNNVEMEIANM-LEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred             cHHHHHHHHHH-HHhCCCcCEEeCcCCCC
Confidence            44555566654 56778899999877543