Citrus Sinensis ID: 046665

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccEEEEEccHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccEccccHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHcc
Coil and Loop (DISEMBL)
MEIVTFVVTKVAEYLvapiihpftyYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLIEVEEKsnnrcfnglcpnlkthyqlSKKAEMEVNAIVGLhekrkfdsvsfrtipeEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAqvsqtpqikkiqe
Flexible Loop (DISEMBL)
MEIVTFVVTKVAeylvapiihpFTYYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLIEVEEksnnrcfnglcpNLKTHYQLSKKAEMEVNAIVGlhekrkfdsvsfrTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVisaqvsqtpqikkiqe
Low Complexity Region (SEG)
MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQE
Disordered region (IsUnstruct)
**IVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVI***************
Disordered Region (DISOPRED)
MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKL*NARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHEKRKF*SVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQE
Disordered Region (DISEMBL)
MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ************
Disordered Region (DISPRO)
MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNxxxxxxxxxxxxxxxxxxxxxWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
P60838	894	Probable disease resistan	yes	no	0.848	0.193	0.264	4e-10
Q9FLB4	874	Putative disease resistan	no	no	0.813	0.189	0.269	1e-08
O64973	889	Disease resistance protei	no	no	0.754	0.173	0.287	9e-08
O22727	967	Probable disease resistan	no	no	0.759	0.160	0.273	9e-08
Q9FG90	862	Probable disease resistan	no	no	0.911	0.215	0.273	2e-07
O23317	719	Probable disease resistan	no	no	0.848	0.240	0.243	3e-07
Q9FG91	848	Probable disease resistan	no	no	0.857	0.206	0.278	9e-07
Q8L3R3	885	Disease resistance protei	no	no	0.745	0.171	0.266	1e-06
Q940K0	889	Probable disease resistan	no	no	0.872	0.200	0.263	1e-06
O64789	925	Probable disease resistan	no	no	0.759	0.167	0.273	1e-06

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 31/204 (15%)

Query: 25  YYCTYKTNFEKLKNDVDKLKNARD------------------SHIEEWLISVDEVISEVR 66
           Y C    N   +K D++ LK  RD                  S ++ WL +V  V ++  
Sbjct: 28  YICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERLSQVQGWLTNVSTVENKFN 87

Query: 67  KLIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIP-- 122
           +L+   +    R C  G C  N+K  Y   K+  + +  I  L  +  FD+V+  T P  
Sbjct: 88  ELLTTNDAELQRLCLFGFCSKNVKMSYLYGKRVVLMLKEIESLSSQGDFDTVTLAT-PIA 146

Query: 123 --EEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ-A 179
             EE+ ++ T        +++ L+ +   L+     ++G+YGMGG+GKT L+  +  + +
Sbjct: 147 RIEEMPIQPT-----IVGQETMLERVWTRLTEDGDEIVGLYGMGGVGKTTLLTRINNKFS 201

Query: 180 KGNNLFEKVISAQVSQTPQIKKIQ 203
           +  + F  VI   VS++P I +IQ
Sbjct: 202 EKCSGFGVVIWVVVSKSPDIHRIQ 225

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 33  FEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLI-EVEEKSNNRCFNGLCP-NLKTH 90
            +++K   D+  N  D  +++WL  V+  + E   ++ + +E+ +N C    C    K  
Sbjct: 54  LKRIKVQEDRGLNLLD-EVQQWLSEVESRVCEAHDILSQSDEEIDNLCCGQYCSKRCKYS 112

Query: 91  YQLSKKAEMEVNAIVGLHEKRKFDSVSFR-TIPEEIWLKSTEGFIHFE--SRKSTLKEIL 147
           Y  SK    ++  +  L  K  FD V+ +  IP     K  E   H E   +++ ++   
Sbjct: 113 YDYSKSVINKLQDVENLLSKGVFDEVAQKGPIP-----KVEERLFHQEIVGQEAIVESTW 167

Query: 148 GSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG-NNLFEKVISAQVSQTPQIKKIQE 204
            S+      ++G+YGMGG+GKT L+ ++  + +  +N F+  I   VS+ P +K+IQE
Sbjct: 168 NSMMEVGVGLLGIYGMGGVGKTTLLSQINNKFRTVSNDFDIAIWVVVSKNPTVKRIQE 225

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 13/167 (7%)

Query: 44  KNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEV 101
           +  R S ++ WL SV  + ++   L+   E    R C  G C  +LK  Y+  K+  M +
Sbjct: 65  RQQRLSQVQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMML 124

Query: 102 NAIVGLHEKRKFDSVSFRTIP----EEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNM 157
             +  L  +  FD VS  T P    +EI  + T        ++  L++    L      +
Sbjct: 125 KEVESLSSQGFFDVVSEAT-PFADVDEIPFQPT-----IVGQEIMLEKAWNRLMEDGSGI 178

Query: 158 IGVYGMGGIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQ 203
           +G+YGMGG+GKT L+ ++  + +K ++ F+ VI   VS++  ++KIQ
Sbjct: 179 LGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQ 225

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 47  RDSHIEEWLISVDEVISEVRKLIEVEE-KSNNRCFNGLCPN-LKTHYQLSKKAEMEVNAI 104
           R   ++ WL  V+ +  E + L+ V   +    C  GLC   + + Y+  K+  + +  +
Sbjct: 66  RLEAVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEV 125

Query: 105 VGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMG 164
             L  +  FD VS      E+  + T+  I    ++  LK+    L      ++G++GMG
Sbjct: 126 TKLKSEGNFDEVSQPPPRSEVEERPTQPTI---GQEEMLKKAWNRLMEDGVGIMGLHGMG 182

Query: 165 GIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQE 204
           G+GKT L K++  + A+    F+ VI   VSQ  ++ K+QE
Sbjct: 183 GVGKTTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQE 223

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG90|DRL33_ARATH Probable disease resistance protein At5g43740 OS=Arabidopsis thaliana GN=At5g43740 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 37/223 (16%)

Query: 14  YLVAPIIHPFTYYC-----------TYKTNFEKLKNDVDKLKNARDS-----HIEE---- 53
           +LV P    FT  C             ++N + L+  +++LKN RD       IEE    
Sbjct: 4   WLVIPWNQIFTAACGCFLSDRNYIHMMESNLDALQKTMEELKNGRDDLLGRVSIEEDKGL 63

Query: 54  --------WLISVDEVISEVRKLIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNA 103
                   WL  V  V SE + L+E       R C  G C  +  + Y   +K    +  
Sbjct: 64  QRLAQVNGWLSRVQIVESEFKDLLEAMSIETGRLCLLGYCSEDCISSYNYGEKVSKMLEE 123

Query: 104 IVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEI-LGSLSNHNFNMIGVYG 162
           +  L  K+      FR + +EI  K  +  I        L E+   SL N     +G+YG
Sbjct: 124 VKELLSKK-----DFRMVAQEIIHKVEKKLIQTTVGLDKLVEMAWSSLMNDEIGTLGLYG 178

Query: 163 MGGIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQE 204
           MGG+GKT L++ +  +  +  + F+ VI   VS+  Q + IQ+
Sbjct: 179 MGGVGKTTLLESLNNKFVELESEFDVVIWVVVSKDFQFEGIQD 221

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 12/185 (6%)

Query: 25  YYCTYKTNFEKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLC 84
           Y  +   N   L+  ++ LK   D       +  +E +    +L +V+ +    CF G C
Sbjct: 22  YIHSLPENLAALQKAIEVLKTKHDDVKRR--VDKEEFLGRRHRLSQVQVEIERLCFCGFC 79

Query: 85  P-NLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIP---EEIWLKSTEGFIHFESRK 140
             +    Y   K   + +  +  L  +  FD V+   +    EE+ ++ST        ++
Sbjct: 80  SKSFGKSYHYGKMVSVMLKEVENLSSRGVFDVVTEENLVAQVEEMPIQST-----VVGQE 134

Query: 141 STLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQI 199
           + L+ +  +L    F ++G+YGMGG+GKT L+ ++  + ++ +  F+ V+   VS+T +I
Sbjct: 135 TMLERVWNTLMKDGFKIMGLYGMGGVGKTTLLTQINKKFSETDGGFDIVMWVVVSKTSEI 194

Query: 200 KKIQE 204
            +IQE
Sbjct: 195 YRIQE 199

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 26/201 (12%)

Query: 25  YYCTYKTNFEKLKNDVDKLKNARDS-----HIEE------------WLISVDEVISEVRK 67
           Y    ++N + L+  +++LKN RD       IEE            WL  V  V SE + 
Sbjct: 27  YIHLMESNLDALQKTMEELKNGRDDLLARVSIEEDKGLQRLALVNGWLSRVQIVESEFKD 86

Query: 68  LIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEI 125
           L+E       R C  G C  +  + Y    K    +  +  L  K+ F+ V+ + IP   
Sbjct: 87  LLEAMSIETGRLCLFGYCSEDCISSYNYGGKVMKNLEEVKELLSKKNFEVVAQKIIP--- 143

Query: 126 WLKSTEGFIHFESRKSTLKEILG-SLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ-AKGNN 183
             K+ +  I       T+  I   SL +     +G+YGMGGIGKT L++ +  +  +  +
Sbjct: 144 --KAEKKHIQTTVGLDTMVGIAWESLIDDEIRTLGLYGMGGIGKTTLLESLNNKFVELES 201

Query: 184 LFEKVISAQVSQTPQIKKIQE 204
            F+ VI   VS+  Q++ IQ+
Sbjct: 202 EFDVVIWVVVSKDFQLEGIQD 222

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 47  RDSHIEEWLISVDEVISEVRKLIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNAI 104
           R + ++ WL  +  + ++   L+        R C  G C  N+K  Y   K+  + +  +
Sbjct: 68  RLAQVQVWLTRIQTIENQFNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLREV 127

Query: 105 VGLHEKRKFDSVSFRTIP----EEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGV 160
            GL  +  FD V+    P    EE+ ++ST        + S L ++   L      ++G+
Sbjct: 128 EGLSSQGVFDIVT-EAAPIAEVEELPIQST-----IVGQDSMLDKVWNCLMEDKVWIVGL 181

Query: 161 YGMGGIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQE 204
           YGMGG+GKT L+ ++  + +K    F+ VI   VS+   + KIQ+
Sbjct: 182 YGMGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQK 226

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 23/201 (11%)

Query: 24  TYYCTYKTNFEKLKNDVDKL---------KNARDSH--------IEEWLISVDEVISEVR 66
           +Y  T + N   L+ +++ L         K ARD          ++ WL  V+ V  E +
Sbjct: 25  SYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQRRLEAVQVWLDRVNSVDIECK 84

Query: 67  KLIEVEE-KSNNRCFNGLCPN-LKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEE 124
            L+ V   +    C  GLC   + + Y+  KK  + +  +  L+ +  FD VS      E
Sbjct: 85  DLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKKLNSEGNFDEVSQPPPRSE 144

Query: 125 IWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ-AKGNN 183
           +  + T+  I    ++  L++    L      ++G++GMGG+GKT L K++  + A+   
Sbjct: 145 VEERPTQPTI---GQEDMLEKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGG 201

Query: 184 LFEKVISAQVSQTPQIKKIQE 204
            F+ VI   VS+   I K+QE
Sbjct: 202 TFDIVIWIVVSKGVMISKLQE 222

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 47  RDSHIEEWLISVDEVISEVRKLIEVEE-KSNNRCFNGLCPN-LKTHYQLSKKAEMEVNAI 104
           R   ++ WL  V+ +  E + L+ V   +    C  GLC   + + Y+  KK  + +  +
Sbjct: 67  RLEAVQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCTKYVCSSYKYGKKVFLLLEEV 126

Query: 105 VGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMG 164
             L  +  FD VS      E+  + T+  I    ++  L++    L      ++G++GMG
Sbjct: 127 KILKSEGNFDEVSQPPPRSEVEERPTQPTI---GQEEMLEKAWNRLMEDGVGIMGLHGMG 183

Query: 165 GIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQE 204
           G+GKT L K++  + A+    F+ VI   VSQ  ++ K+QE
Sbjct: 184 GVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSQGAKLSKLQE 224

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
359488027	1520	PREDICTED: disease resistance protein At	0.990	0.132	0.406	1e-39
147802546	1409	hypothetical protein VITISV_007222 [Viti	0.990	0.143	0.401	2e-39
224147195	554	cc-nbs resistance protein [Populus trich	0.975	0.359	0.436	1e-38
147787802	1517	hypothetical protein VITISV_005047 [Viti	0.975	0.131	0.415	5e-38
302143590	948	unnamed protein product [Vitis vinifera]	0.975	0.209	0.415	5e-38
147833354	1494	hypothetical protein VITISV_041837 [Viti	0.980	0.133	0.4	6e-38
296087869	1711	unnamed protein product [Vitis vinifera]	0.975	0.116	0.4	9e-38
359488025	1781	PREDICTED: uncharacterized protein LOC10	0.975	0.111	0.4	1e-37
147800070	434	hypothetical protein VITISV_036215 [Viti	0.946	0.444	0.4	2e-37
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.985	0.118	0.398	3e-37

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 130/219 (59%), Gaps = 17/219 (7%)

Query: 2   EIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNAR-------------- 47
           EIV  +  KVAEYLVAPI   F Y   Y++N + L+  V+KL +AR              
Sbjct: 3   EIVVTIAAKVAEYLVAPIGRSFGYLFNYRSNIDDLRQQVEKLGDARARLERSVDEAIRNG 62

Query: 48  ---DSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAI 104
              ++ +++WL+ V   + E     EVE+K+N  CFNG CPNLK+ YQLS++A+     +
Sbjct: 63  DEIEADVDKWLLRVSGFMEEAGIFFEVEKKANQSCFNGSCPNLKSQYQLSREAKKRARVV 122

Query: 105 VGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMG 164
             +    KF+ VS+R     I     +G    ESR +TL EI+ +L + + N+IGV+GM 
Sbjct: 123 AEIQGDGKFERVSYRAPLPGIGSAPFKGHEALESRMTTLDEIMEALRDAHVNIIGVWGMA 182

Query: 165 GIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
           G+GKT L+K+VA QA+   LF+KV+ A +S TP++KKIQ
Sbjct: 183 GVGKTTLMKQVAKQAEEEKLFDKVVMAYISSTPELKKIQ 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 129/219 (58%), Gaps = 17/219 (7%)

Query: 2   EIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNAR-------------- 47
           EIV  +  KVAEYLVAPI   F Y   Y++N + L+  V+KL +AR              
Sbjct: 3   EIVVTIAAKVAEYLVAPIGRSFGYLFNYRSNIDDLRQQVEKLGDARARLERSVDEAIRNG 62

Query: 48  ---DSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAI 104
              ++ +++WL+ V   + E     EVE+K+N  CFNG CPNLK+ YQLS++A+     +
Sbjct: 63  DEIEADVDKWLLRVSGFMEEAGIFFEVEKKANQSCFNGSCPNLKSQYQLSREAKKRARVV 122

Query: 105 VGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMG 164
             +    KF+ VS+R     I     +G    ESR +TL EI+ +L + + N+IGV+GM 
Sbjct: 123 AEIQGDGKFERVSYRAPLPGIGSAPFKGHEALESRMTTLDEIMEALRDAHVNIIGVWGMA 182

Query: 165 GIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
           G+GKT L+K+VA Q +   LF+KV+ A +S TP++KKIQ
Sbjct: 183 GVGKTTLMKQVAKQVEEEKLFDKVVMAYISSTPELKKIQ 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224147195|ref|XP_002336426.1| cc-nbs resistance protein [Populus trichocarpa] gi|222834979|gb|EEE73428.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/220 (43%), Positives = 129/220 (58%), Gaps = 21/220 (9%)

Query: 1   MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDS---HIEE---- 53
           MEIV  +V KVAE LV PI     Y     +N + LKN+V+KL +A+      IEE    
Sbjct: 1   MEIVISIVAKVAELLVVPIKRQIGYVLDCNSNIQNLKNEVEKLTDAKTRVIHSIEEAQWN 60

Query: 54  ----------WLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNA 103
                     WL SVD VI     +  V ++S+ +CF GLCP+LK  Y+L K A+ E+  
Sbjct: 61  GEEIEVEVLNWLGSVDGVIEGAGGV--VADESSKKCFMGLCPDLKIRYRLGKAAKKELTV 118

Query: 104 IVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGM 163
           +V L  K KFD VS+R  P  I     + +  FESR S L +I+G+L + + NM+GV+GM
Sbjct: 119 VVDLQGKGKFDRVSYRAAPSGI--GPVKDYEAFESRNSVLNDIVGALKDGDENMVGVFGM 176

Query: 164 GGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
            G+GKT LVK+VA Q K   LF +V+ A VSQTP I++IQ
Sbjct: 177 AGVGKTTLVKKVAEQVKEGRLFNEVVLAVVSQTPDIRRIQ 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera]

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 126/219 (57%), Gaps = 20/219 (9%)

Query: 2   EIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH----------- 50
           EIV  V  KV++ LV P+     Y   Y+TN E L  +V+KL++ARD H           
Sbjct: 3   EIVAKVAAKVSKCLVVPVKRQLGYLFNYRTNIEDLSQEVEKLRHARDGHQHSVNEAIGNG 62

Query: 51  --IEE----WLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAI 104
             IE+    WL   D  I +  K +E E+++   CFNGLCPNLK+ YQLS++A  +    
Sbjct: 63  HKIEDYVCKWLTRADGFIQDACKFLEDEKEAQKSCFNGLCPNLKSRYQLSREARKKARVA 122

Query: 105 VGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMG 164
           V +H   +F  VS+R   +EI    +E      SR  TL E++ +L +   N IGV+G+G
Sbjct: 123 VQMHGDGQFVRVSYRAPLQEIRSAPSEAL---RSRVLTLDEVMEALRDAKINKIGVWGLG 179

Query: 165 GIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
           G+GKT LVK+VA QA    LF+KV++A V QTP +KKIQ
Sbjct: 180 GVGKTTLVKQVAEQAAQEKLFDKVVTAAVLQTPDLKKIQ 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143590|emb|CBI22343.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 126/219 (57%), Gaps = 20/219 (9%)

Query: 2   EIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH----------- 50
           EIV  V  KV++ LV P+     Y   Y+TN E L  +V+KL++ARD H           
Sbjct: 3   EIVAKVAAKVSKCLVVPVKRQLGYLFNYRTNIEDLSQEVEKLRHARDGHQHSVNEAIGNG 62

Query: 51  --IEE----WLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAI 104
             IE+    WL   D  I +  K +E E+++   CFNGLCPNLK+ YQLS++A  +    
Sbjct: 63  HKIEDYVCKWLTRADGFIQDACKFLEDEKEAQKSCFNGLCPNLKSRYQLSREARKKARVA 122

Query: 105 VGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMG 164
           V +H   +F  VS+R   +EI    +E      SR  TL E++ +L +   N IGV+G+G
Sbjct: 123 VQMHGDGQFVRVSYRAPLQEIRSAPSEAL---RSRVLTLDEVMEALRDAKINKIGVWGLG 179

Query: 165 GIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
           G+GKT LVK+VA QA    LF+KV++A V QTP +KKIQ
Sbjct: 180 GVGKTTLVKQVAEQAAQEKLFDKVVTAAVLQTPDLKKIQ 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833354|emb|CAN66237.1| hypothetical protein VITISV_041837 [Vitis vinifera]

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 129/220 (58%), Gaps = 20/220 (9%)

Query: 1   MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH---------- 50
           ++IV  V  KV+EYLV P++    Y   Y+TN E L  +V+KL++ARD H          
Sbjct: 2   VDIVFSVAAKVSEYLVVPVVRQLGYLFNYRTNIEDLSQEVEKLRDARDRHQHSVNEAIGN 61

Query: 51  ---IEE----WLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNA 103
              IE+    WL   D  I +  K +E E+++   CFNGLCPNLK+ +QLS++A  +   
Sbjct: 62  GHKIEDYVCKWLTRADGFIQDACKFLEDEKEAQKSCFNGLCPNLKSRHQLSREARKKAGV 121

Query: 104 IVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGM 163
            V + E  +F+ VS+RT  + I    +E     ESR  TL E++ +L + N N IG++GM
Sbjct: 122 SVQILENGQFEKVSYRTPLQGIRTAPSEAL---ESRMLTLNEVMEALRDANINRIGLWGM 178

Query: 164 GGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
           GG+GK+ LVK +A QA    LF+KV+   V QTP +++IQ
Sbjct: 179 GGVGKSTLVKHLAEQANQEKLFDKVVKVSVLQTPDLERIQ 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087869|emb|CBI35152.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 21/220 (9%)

Query: 1   MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNAR------------- 47
           +EIV  V  KV+EYLV P++    Y   Y+TN E L   V+KL+ AR             
Sbjct: 2   VEIVVSVAAKVSEYLVGPVVRQLGYLFNYRTNIEDLSQKVEKLRGARARLQHSVDEAIRN 61

Query: 48  ----DSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNA 103
               +  + +W+   D  I +  K +E +E++   CFNGLCPNLK+ YQLS++A  +   
Sbjct: 62  GHKIEDDVCKWMTRADGFIQKDCKFLE-DEEARKSCFNGLCPNLKSRYQLSREARKKAGV 120

Query: 104 IVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGM 163
            V +HE  +F+  S+R   +EI    +E     ESR  TL E++ +L +   N IGV+G+
Sbjct: 121 AVEIHEAGQFERASYRAPLQEIRSAPSEAL---ESRMLTLNEVMKALRDAKINKIGVWGL 177

Query: 164 GGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
           GG+GKT LVK+VA QA    LF+KV++A V +TP +KKIQ
Sbjct: 178 GGVGKTTLVKQVAEQAAQEKLFDKVVTAAVLETPDLKKIQ 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera]

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 21/220 (9%)

Query: 1   MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNAR------------- 47
           +EIV  V  KV+EYLV P++    Y   Y+TN E L   V+KL+ AR             
Sbjct: 2   VEIVVSVAAKVSEYLVGPVVRQLGYLFNYRTNIEDLSQKVEKLRGARARLQHSVDEAIRN 61

Query: 48  ----DSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNA 103
               +  + +W+   D  I +  K +E +E++   CFNGLCPNLK+ YQLS++A  +   
Sbjct: 62  GHKIEDDVCKWMTRADGFIQKDCKFLE-DEEARKSCFNGLCPNLKSRYQLSREARKKAGV 120

Query: 104 IVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGM 163
            V +HE  +F+  S+R   +EI    +E     ESR  TL E++ +L +   N IGV+G+
Sbjct: 121 AVEIHEAGQFERASYRAPLQEIRSAPSEAL---ESRMLTLNEVMKALRDAKINKIGVWGL 177

Query: 164 GGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
           GG+GKT LVK+VA QA    LF+KV++A V +TP +KKIQ
Sbjct: 178 GGVGKTTLVKQVAEQAAQEKLFDKVVTAAVLETPDLKKIQ 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800070|emb|CAN77510.1| hypothetical protein VITISV_036215 [Vitis vinifera]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 125/210 (59%), Gaps = 17/210 (8%)

Query: 11  VAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNAR-----------------DSHIEE 53
           V EYLVAPI  PF Y   Y +N + L + V+KL +AR                 ++ +++
Sbjct: 12  VVEYLVAPIGRPFGYLFNYHSNIDNLVHQVEKLGDARAGLQCSVDEAIRNGDEIEADVDK 71

Query: 54  WLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHEKRKF 113
           WLI  +  + E  K +E  +K+N  CF GLCPNLK  Y+LS+ A+ + + +V +   RKF
Sbjct: 72  WLIGANGFMEEAGKFLEDGKKANKSCFMGLCPNLKLQYKLSRAAKKKASEVVEIQGARKF 131

Query: 114 DSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVK 173
           + +S+R     I   +  G+   ESR STL +I+ +L + + NMIGV+GMGG+GKT LV+
Sbjct: 132 ERLSYRAPLLGIGSATLRGYEALESRMSTLNQIMEALRDGDDNMIGVWGMGGVGKTTLVE 191

Query: 174 EVAGQAKGNNLFEKVISAQVSQTPQIKKIQ 203
           +VA  AK   LF++V+ A V Q P ++KIQ
Sbjct: 192 QVAKHAKEQKLFDEVVMASVFQNPDLRKIQ 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 20/221 (9%)

Query: 1   MEIVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNAR------------- 47
           +EIV  V  KV+EYLV P I    Y   Y+ N E L   V+KL++AR             
Sbjct: 2   VEIVLSVAAKVSEYLVDPAIRQLGYLFNYRANIEDLSQQVEKLRDARARLQHSVDEAIGN 61

Query: 48  ----DSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTHYQLSKKAEMEVNA 103
               +  + +W+   D  I    K +E E+++   CFNGLCPNLK+ YQLS++A  +   
Sbjct: 62  GHIIEDDVRKWMKRADGFIQNACKFLEDEKEARKSCFNGLCPNLKSRYQLSREARKKAGV 121

Query: 104 IVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGM 163
            V +H   +F+ VS+R   +EI    +E     ESR  TL E++ +L + N N IGV+GM
Sbjct: 122 AVEIHGAGQFERVSYRAPLQEIRTAPSEAL---ESRMLTLNEVMEALRDANINRIGVWGM 178

Query: 164 GGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQE 204
           GG+GK+ LVK+VA QA+   LF KV+   V QTP  K IQ+
Sbjct: 179 GGVGKSTLVKQVAEQAEQEKLFRKVVMVPVIQTPDFKGIQQ 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.808	0.188	0.271	1.4e-11
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.799	0.182	0.269	1.7e-10
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.740	0.156	0.273	1.3e-09
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.754	0.173	0.287	9.5e-09
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.818	0.185	0.272	3.1e-08
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.941	0.213	0.255	1.5e-07
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.745	0.171	0.266	3.1e-07
TAIR|locus:2170902	862	AT5G43740 [Arabidopsis thalian	0.857	0.203	0.278	5.7e-07
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.848	0.204	0.280	1.1e-06
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.759	0.174	0.242	1.1e-06

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 48/177 (27%), Positives = 88/177 (49%)

Query:    34 EKLKNDVDKLKNARDSHIEEWLISVDEVISEVRKLI-EVEEKSNNRCFNGLCPN-LKTHY 91
             +++K   D+  N  D  +++WL  V+  + E   ++ + +E+ +N C    C    K  Y
Sbjct:    55 KRIKVQEDRGLNLLDE-VQQWLSEVESRVCEAHDILSQSDEEIDNLCCGQYCSKRCKYSY 113

Query:    92 QLSKKAEMEVNAIVGLHEKRKFDSVSFR-TIPEEIWLKSTEGFIHFE--SRKSTLKEILG 148
               SK    ++  +  L  K  FD V+ +  IP     K  E   H E   +++ ++    
Sbjct:   114 DYSKSVINKLQDVENLLSKGVFDEVAQKGPIP-----KVEERLFHQEIVGQEAIVESTWN 168

Query:   149 SLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG-NNLFEKVISAQVSQTPQIKKIQE 204
             S+      ++G+YGMGG+GKT L+ ++  + +  +N F+  I   VS+ P +K+IQE
Sbjct:   169 SMMEVGVGLLGIYGMGGVGKTTLLSQINNKFRTVSNDFDIAIWVVVSKNPTVKRIQE 225

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 48/178 (26%), Positives = 90/178 (50%)

Query:    35 KLKNDVDKLKNARD--SHIEEWLISVDEVISEVRKLIEVEEKSNNR-CFNGLCP-NLKTH 90
             K + D+++    R+  S ++ WL +V  V ++  +L+   +    R C  G C  N+K  
Sbjct:    54 KRRVDIEEFTRRRERLSQVQGWLTNVSTVENKFNELLTTNDAELQRLCLFGFCSKNVKMS 113

Query:    91 YQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIP----EEIWLKSTEGFIHFESRKSTLKEI 146
             Y   K+  + +  I  L  +  FD+V+  T P    EE+ ++ T        +++ L+ +
Sbjct:   114 YLYGKRVVLMLKEIESLSSQGDFDTVTLAT-PIARIEEMPIQPT-----IVGQETMLERV 167

Query:   147 LGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQ 203
                L+     ++G+YGMGG+GKT L+  +  + ++  + F  VI   VS++P I +IQ
Sbjct:   168 WTRLTEDGDEIVGLYGMGGVGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQ 225

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 43/157 (27%), Positives = 77/157 (49%)

Query:    51 IEEWLISVDEVISEVRKLIEVEEKSNNR-CFNGLCPN-LKTHYQLSKKAEMEVNAIVGLH 108
             ++ WL  V+ +  E + L+ V      + C  GLC   + + Y+  K+  + +  +  L 
Sbjct:    70 VQVWLDRVNSIDIECKDLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLK 129

Query:   109 EKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGK 168
              +  FD VS      E+  + T+  I    ++  LK+    L      ++G++GMGG+GK
Sbjct:   130 SEGNFDEVSQPPPRSEVEERPTQPTI---GQEEMLKKAWNRLMEDGVGIMGLHGMGGVGK 186

Query:   169 TMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQE 204
             T L K++  + A+    F+ VI   VSQ  ++ K+QE
Sbjct:   187 TTLFKKIHNKFAETGGTFDIVIWIVVSQGAKLSKLQE 223

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 48/167 (28%), Positives = 83/167 (49%)

Query:    44 KNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEV 101
             +  R S ++ WL SV  + ++   L+   E    R C  G C  +LK  Y+  K+  M +
Sbjct:    65 RQQRLSQVQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMML 124

Query:   102 NAIVGLHEKRKFDSVSFRTIP----EEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNM 157
               +  L  +  FD VS  T P    +EI  + T        ++  L++    L      +
Sbjct:   125 KEVESLSSQGFFDVVSEAT-PFADVDEIPFQPT-----IVGQEIMLEKAWNRLMEDGSGI 178

Query:   158 IGVYGMGGIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQ 203
             +G+YGMGG+GKT L+ ++  + +K ++ F+ VI   VS++  ++KIQ
Sbjct:   179 LGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQ 225

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 48/176 (27%), Positives = 87/176 (49%)

Query:    35 KLKNDV--DKLKNARDSH-IEEWLISVDEVISEVRKLIEVEEKSNNR-CFNGLCPN-LKT 89
             +++N V  D+ ++ R    ++ WL  V+ V  E + L+ V      + C  GLC   + +
Sbjct:    50 EVQNKVARDEARHQRRLEAVQVWLDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCS 109

Query:    90 HYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGS 149
              Y+  KK  + +  +  L+ +  FD VS      E+  + T+  I    ++  L++    
Sbjct:   110 SYKYGKKVFLLLEEVKKLNSEGNFDEVSQPPPRSEVEERPTQPTI---GQEDMLEKAWNR 166

Query:   150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQE 204
             L      ++G++GMGG+GKT L K++  + A+    F+ VI   VS+   I K+QE
Sbjct:   167 LMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQE 222

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 54/211 (25%), Positives = 94/211 (44%)

Query:     8 VTKVAEYLVAPIIHPFTY---YCTYKTNFEKLKNDVD----KLKNARD------SHIEEW 54
             V KV+++L   + +           +T  E+LK   D    KLK   D        I+ W
Sbjct:    13 VNKVSQWLDMKVSYTHNLEKNLVALETTMEELKAKRDDLLRKLKREEDRGLQTLGEIKVW 72

Query:    55 LISVDEVISEVRKLIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNAIVGLHEKRK 112
             L  V+ + S V  L+        R C  G C  +L T Y+  K   +++  +  L E+R 
Sbjct:    73 LNRVETIESRVNDLLNARNAELQRLCLCGFCSKSLTTSYRYGKSVFLKLREVEKL-ERRV 131

Query:   113 FDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLV 172
             F+ +S +    E+  +  +  I    +++ L      L      ++G+YGMGG+GKT L+
Sbjct:   132 FEVISDQASTSEVEEQQLQPTI--VGQETMLDNAWNHLMEDGVGIMGLYGMGGVGKTTLL 189

Query:   173 KEVAGQ-AKGNNLFEKVISAQVSQTPQIKKI 202
              ++  + +K    F+ VI   VS+   ++ I
Sbjct:   190 TQINNKFSKYMCGFDSVIWVVVSKEVNVENI 220

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 44/165 (26%), Positives = 78/165 (47%)

Query:    47 RDSHIEEWLISVDEVISEVRKLIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNAI 104
             R + ++ WL  +  + ++   L+        R C  G C  N+K  Y   K+  + +  +
Sbjct:    68 RLAQVQVWLTRIQTIENQFNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLREV 127

Query:   105 VGLHEKRKFDSVSFRTIP----EEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGV 160
              GL  +  FD V+    P    EE+ ++ST        + S L ++   L      ++G+
Sbjct:   128 EGLSSQGVFDIVT-EAAPIAEVEELPIQST-----IVGQDSMLDKVWNCLMEDKVWIVGL 181

Query:   161 YGMGGIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQE 204
             YGMGG+GKT L+ ++  + +K    F+ VI   VS+   + KIQ+
Sbjct:   182 YGMGGVGKTTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQK 226

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 56/201 (27%), Positives = 88/201 (43%)

Query:    25 YYCTYKTNFEKLKNDVDKLKNARDS-----HIEE------------WLISVDEVISEVRK 67
             Y    ++N + L+  +++LKN RD       IEE            WL  V  V SE + 
Sbjct:    26 YIHMMESNLDALQKTMEELKNGRDDLLGRVSIEEDKGLQRLAQVNGWLSRVQIVESEFKD 85

Query:    68 LIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEI 125
             L+E       R C  G C  +  + Y   +K    +  +  L  K+      FR + +EI
Sbjct:    86 LLEAMSIETGRLCLLGYCSEDCISSYNYGEKVSKMLEEVKELLSKK-----DFRMVAQEI 140

Query:   126 WLKSTEGFIHFESRKSTLKEIL-GSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ-AKGNN 183
               K  +  I        L E+   SL N     +G+YGMGG+GKT L++ +  +  +  +
Sbjct:   141 IHKVEKKLIQTTVGLDKLVEMAWSSLMNDEIGTLGLYGMGGVGKTTLLESLNNKFVELES 200

Query:   184 LFEKVISAQVSQTPQIKKIQE 204
              F+ VI   VS+  Q + IQ+
Sbjct:   201 EFDVVIWVVVSKDFQFEGIQD 221

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 57/203 (28%), Positives = 93/203 (45%)

Query:    25 YYCTYKTNFEKLKNDVDKLKNARDS-----HIEE------------WLISVDEVISEVRK 67
             Y    ++N + L+  +++LKN RD       IEE            WL  V  V SE + 
Sbjct:    27 YIHLMESNLDALQKTMEELKNGRDDLLARVSIEEDKGLQRLALVNGWLSRVQIVESEFKD 86

Query:    68 LIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIP--E 123
             L+E       R C  G C  +  + Y    K    +  +  L  K+ F+ V+ + IP  E
Sbjct:    87 LLEAMSIETGRLCLFGYCSEDCISSYNYGGKVMKNLEEVKELLSKKNFEVVAQKIIPKAE 146

Query:   124 EIWLKSTEGFIHFESRKSTLKEILG-SLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ-AKG 181
             +  +++T G         T+  I   SL +     +G+YGMGGIGKT L++ +  +  + 
Sbjct:   147 KKHIQTTVGL-------DTMVGIAWESLIDDEIRTLGLYGMGGIGKTTLLESLNNKFVEL 199

Query:   182 NNLFEKVISAQVSQTPQIKKIQE 204
              + F+ VI   VS+  Q++ IQ+
Sbjct:   200 ESEFDVVIWVVVSKDFQLEGIQD 222

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 39/161 (24%), Positives = 75/161 (46%)

Query:    47 RDSHIEEWLISVDEVISEVRKLIEVEEKSNNR-CFNGLCP-NLKTHYQLSKKAEMEVNAI 104
             R S ++ W+  V+ ++  V +L+ +      R C  G C  NL + Y+  K+    +  +
Sbjct:    67 RLSVVQGWVSKVEAIVPRVNELVRMRSVQVQRLCLCGFCSKNLVSSYRYGKRVMKMIEEV 126

Query:   105 VGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMG 164
               L  +  F  V+ R     +  + T   +  +     L+     L      ++G++GMG
Sbjct:   127 EVLRYQGDFAVVAERVDAARVEERPTRPMVAMDPM---LESAWNRLMEDEIGILGLHGMG 183

Query:   165 GIGKTMLVKEVAGQ-AKGNNLFEKVISAQVSQTPQIKKIQE 204
             G+GKT L+  +  + ++    F+ VI   VS+  QI++IQ+
Sbjct:   184 GVGKTTLLSHINNRFSRVGGEFDIVIWIVVSKELQIQRIQD 224

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.39080001 cc-nbs resistance protein (554 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-06

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 139 RKSTLKEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT 196
           R+  ++ ++  L   + N  ++G+ GMGG+GKT L K++         F+ V    VS+T
Sbjct: 1   REDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKT 60

Query: 197 PQIKKIQE 204
               ++Q+
Sbjct: 61  YTEFRLQK 68

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.95
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.1
cd01128	249	rho_factor Transcription termination factor rho is	98.86
PRK09376	416	rho transcription termination factor Rho; Provisio	98.77
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.39
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.39
TIGR00767	415	rho transcription termination factor Rho. Members	98.39
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.31
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.19
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.14
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.08
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.95
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.89
PTZ00202	550	tuzin; Provisional	97.83
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.81
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.75
PRK06696	223	uridine kinase; Validated	97.74
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.71
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.67
KOG2028	554	consensus ATPase related to the helicase subunit o	97.66
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.65
PRK13342	413	recombination factor protein RarA; Reviewed	97.65
PRK06547	172	hypothetical protein; Provisional	97.63
PF13173	128	AAA_14: AAA domain	97.62
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.57
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.52
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.51
PRK04195	482	replication factor C large subunit; Provisional	97.5
PRK12402	337	replication factor C small subunit 2; Reviewed	97.48
PRK05564	313	DNA polymerase III subunit delta'; Validated	97.47
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.43
PRK07667	193	uridine kinase; Provisional	97.43
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.41
PLN03025	319	replication factor C subunit; Provisional	97.41
CHL00095	821	clpC Clp protease ATP binding subunit	97.4
PRK15455	644	PrkA family serine protein kinase; Provisional	97.4
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.38
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.37
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.35
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.33
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.33
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.3
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.3
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.3
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.27
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.27
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.26
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.26
PHA00729	226	NTP-binding motif containing protein	97.25
PRK13341	725	recombination factor protein RarA/unknown domain f	97.25
PHA02544	316	44 clamp loader, small subunit; Provisional	97.23
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.22
smart00382	148	AAA ATPases associated with a variety of cellular	97.2
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.19
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.17
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.16
PRK10865	857	protein disaggregation chaperone; Provisional	97.16
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.15
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.15
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.14
PF00004	132	AAA: ATPase family associated with various cellula	97.12
PRK10536	262	hypothetical protein; Provisional	97.11
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.09
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.05
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.05
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.02
PRK03846	198	adenylylsulfate kinase; Provisional	97.02
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.02
PRK08084	235	DNA replication initiation factor; Provisional	97.02
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.02
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.01
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.0
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.98
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	96.97
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.96
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.92
PRK08727	233	hypothetical protein; Validated	96.92
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.91
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.91
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.87
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.87
PRK06893	229	DNA replication initiation factor; Validated	96.86
CHL00181	287	cbbX CbbX; Provisional	96.85
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.84
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.84
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.83
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.83
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.83
PRK06851	367	hypothetical protein; Provisional	96.82
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.81
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.81
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.8
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.79
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.79
PRK14738	206	gmk guanylate kinase; Provisional	96.79
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.79
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.78
PRK09087	226	hypothetical protein; Validated	96.78
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.77
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.77
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.77
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.76
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.76
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.76
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.75
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	96.75
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.74
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.74
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.73
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.73
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.72
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.71
PLN02796	347	D-glycerate 3-kinase	96.71
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.71
PRK05439	311	pantothenate kinase; Provisional	96.71
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.7
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.69
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.69
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.69
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.68
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.68
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.68
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.68
PTZ00112	1164	origin recognition complex 1 protein; Provisional	96.68
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.68
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.67
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.67
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.66
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.66
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.66
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.66
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.65
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.65
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.64
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.64
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	96.63
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.63
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.63
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	96.63
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.62
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.62
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.62
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.62
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.62
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.62
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.61
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.61
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.61
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.6
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.6
PRK06620	214	hypothetical protein; Validated	96.59
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.58
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	96.58
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.57
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.57
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.56
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.56
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.56
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.56
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.56
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	96.56
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.55
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.55
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.55
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.55
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.54
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.54
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.54
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.54
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.54
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.54
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.54
PRK10416	318	signal recognition particle-docking protein FtsY;	96.53
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.53
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.53
PRK04841	903	transcriptional regulator MalT; Provisional	96.52
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.52
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.52
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.51
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.5
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.5
PLN02348	395	phosphoribulokinase	96.5
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.49
PRK10646	153	ADP-binding protein; Provisional	96.49
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.49
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.48
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.48
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.47
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.47
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	96.47
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.47
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.47
PRK10908	222	cell division protein FtsE; Provisional	96.47
PRK12608	380	transcription termination factor Rho; Provisional	96.46
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.46
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.46
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.46
PRK13531	498	regulatory ATPase RavA; Provisional	96.46
PLN02200	234	adenylate kinase family protein	96.46
PRK14974	336	cell division protein FtsY; Provisional	96.45
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.45
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.45
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.45
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.45
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.45
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.44
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.44
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	96.44
PLN02318	656	phosphoribulokinase/uridine kinase	96.44
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.44
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.44
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.44
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.43
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.43
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.43
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.42
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.42
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.42
cd03246	173	ABCC_Protease_Secretion This family represents the	96.42
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.42
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	96.4
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.4
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.4
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.39
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.39
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.39
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.39
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.39
PLN02165	334	adenylate isopentenyltransferase	96.38
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	96.38
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	96.38
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.38
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.38
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.38
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.38
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.38
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.38
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.37
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.37
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.36
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.36
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.36
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.36
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.36
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.35
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	96.35
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	96.35
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.35
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	96.34
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.34
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.34
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.33
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.33
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.33
smart00178	184	SAR Sar1p-like members of the Ras-family of small	96.33
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.33
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	96.33
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	96.33
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.33
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.32
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.32
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.32
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	96.32
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	96.32
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.32
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	96.31
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	96.31
PF07726	131	AAA_3: ATPase family associated with various cellu	96.31
PRK12377	248	putative replication protein; Provisional	96.31
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.31
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.31
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.3
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.3
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	96.3
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	96.3
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.3
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.29
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.29
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.29
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	96.29
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.28
PRK07940	394	DNA polymerase III subunit delta'; Validated	96.28
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.28
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	96.27
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	96.27
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	96.27
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	96.27
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.27
PLN03046	460	D-glycerate 3-kinase; Provisional	96.26
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	96.26
COG0410	237	LivF ABC-type branched-chain amino acid transport	96.26
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	96.26
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	96.25
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.25
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	96.25
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	96.25
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.25
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	96.25
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.25
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.24
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.24
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.24
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.24
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	96.23
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.23
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	96.23
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.23
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.22
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.22
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	96.22
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	96.22
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.22
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	96.22
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.22
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	96.21
PRK09112	351	DNA polymerase III subunit delta'; Validated	96.21
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	96.21
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.21
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.2
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.2
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	96.2
PRK05642	234	DNA replication initiation factor; Validated	96.2
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	96.2
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.2
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	96.2
cd02034	116	CooC The accessory protein CooC, which contains a	96.19
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.19
COG1123	539	ATPase components of various ABC-type transport sy	96.19
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	96.19
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.18
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	96.18
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	96.18
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.18
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	96.17
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.17
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	96.17
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	96.17
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	96.17
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	96.16
PRK06067	234	flagellar accessory protein FlaH; Validated	96.16
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.16
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.16
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.16
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.16
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	96.15
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.15
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.15
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	96.14
COG3899	849	Predicted ATPase [General function prediction only	96.14
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	96.14
COG1875	436	NYN ribonuclease and ATPase of PhoH family domains	96.14
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	96.13
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.12
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.12
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	96.12
PRK08116	268	hypothetical protein; Validated	96.12
PRK13546	264	teichoic acids export protein ATP-binding subunit;	96.12
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	96.11
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	96.11
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.11
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	96.11
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	96.1
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.1
PRK03695	248	vitamin B12-transporter ATPase; Provisional	96.1
PF13245	76	AAA_19: Part of AAA domain	96.1
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	96.1
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	96.1
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	96.1
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	96.09
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	96.09
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	96.09
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	96.09
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.09
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.08
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.08
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.08
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.08
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	96.08
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	96.08
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	96.08
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	96.08
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.07
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.07
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	96.07
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.07
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.06
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	96.06
PRK09183	259	transposase/IS protein; Provisional	96.06
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	96.06
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.05
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	96.05
PRK06851	367	hypothetical protein; Provisional	96.05
COG4136	213	ABC-type uncharacterized transport system, ATPase	96.05
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.04
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	96.04
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.04
PRK09984	262	phosphonate/organophosphate ester transporter subu	96.03
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.03
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	96.03
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.02
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	96.02
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	96.01
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.01
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	96.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	96.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	96.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	96.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.99
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	95.97
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	95.97
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	95.97
COG4559	259	ABC-type hemin transport system, ATPase component	95.97
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	95.96
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.95
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	95.95
PRK07952	244	DNA replication protein DnaC; Validated	95.95
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	95.94
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	95.94
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	95.94
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.94
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	95.94
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	95.93
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	95.93
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	95.93
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	95.93
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.93
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	95.93
PTZ00035	337	Rad51 protein; Provisional	95.93
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	95.93
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.92
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.91
PRK09354	349	recA recombinase A; Provisional	95.91
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	95.91
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	95.91
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	95.9
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	95.9
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	95.9
PRK13537	306	nodulation ABC transporter NodI; Provisional	95.9
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	95.89
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	95.89
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.89
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.89
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	95.88
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.88
PTZ00133	182	ADP-ribosylation factor; Provisional	95.88
PRK06526	254	transposase; Provisional	95.88
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	95.88
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	95.87
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.86
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.84
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	95.84
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	95.84
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.84
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	95.84
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	95.83
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.83
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	95.83
PRK10865	857	protein disaggregation chaperone; Provisional	95.83
COG1127	263	Ttg2A ABC-type transport system involved in resist	95.82
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.82
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	95.82
TIGR02237	209	recomb_radB DNA repair and recombination protein R	95.82
PRK07471	365	DNA polymerase III subunit delta'; Validated	95.81
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	95.81
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	95.81
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	95.81
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	95.81
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	95.81
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	95.8
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	95.79
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	95.79
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	95.79
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	95.79
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	95.79
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	95.79
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.79
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	95.78
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	95.78
PRK13536	340	nodulation factor exporter subunit NodI; Provision	95.78
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	95.78
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	95.78
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	95.77
PRK10938	490	putative molybdenum transport ATP-binding protein	95.77
PRK15064	530	ABC transporter ATP-binding protein; Provisional	95.77
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	95.76
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	95.75
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	95.75
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	95.74
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.74
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	95.74
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	95.74
PRK14088	440	dnaA chromosomal replication initiation protein; P	95.73
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	95.73
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.73
PRK10261	623	glutathione transporter ATP-binding protein; Provi	95.73
KOG0927	614	consensus Predicted transporter (ABC superfamily)	95.72
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.72
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	95.72
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	95.71

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-26  Score=210.22  Aligned_cols=195  Identities=22%  Similarity=0.354  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046665            5 TFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH---------IEEWLISVDEVISEVRKLIEVEEKS   75 (204)
Q Consensus         5 ~~~l~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~el~~l~~~l~~~---------~~~wl~~vr~~~~d~ed~ld~~~~~   75 (204)
                      +..++++.+.+..    .+..+.+.+.++..|+++|..|+.+++++         +..|...++++.|++||+++.+.-.
T Consensus         6 s~~~~~~~~~l~~----~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~   81 (889)
T KOG4658|consen    6 SFGVEKLDQLLNR----ESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE   81 (889)
T ss_pred             EEehhhHHHHHHH----HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356667665553    44677788889999999999999999987         8899999999999999999876311


Q ss_pred             -----------------ccccccccc-cChhHHhHHHHHHHHHHHHHHhhhhcCCCccccc-ccCcccccccccCCCccc
Q 046665           76 -----------------NNRCFNGLC-PNLKTHYQLSKKAEMEVNAIVGLHEKRKFDSVSF-RTIPEEIWLKSTEGFIHF  136 (204)
Q Consensus        76 -----------------~~~~~~~~~-~~~~~~~~~~~~i~~~~~~v~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  136 (204)
                                       +.-|+..++ ......+.+++++.++...++.+..++.+..... ..|.+.++..|...... 
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-  160 (889)
T KOG4658|consen   82 EIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-  160 (889)
T ss_pred             HHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-
Confidence                             011222222 2344456677777777777777766655655443 22333444555444444 


Q ss_pred             cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc-cCCCCceEEEEEcCCCCChHhhhC
Q 046665          137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK-GNNLFEKVISAQVSQTPQIKKIQE  204 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~iq~  204 (204)
                      +|.+..+++++++|.+++..++||+||||+||||||++|||+.. ++++||.+|||+||++|+...||+
T Consensus       161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~  229 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQ  229 (889)
T ss_pred             ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHH
Confidence            99999999999999998889999999999999999999999988 999999999999999999999985

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.54  E-value=1.2e-14  Score=117.42  Aligned_cols=65  Identities=29%  Similarity=0.561  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhhh
Q 046665          139 RKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       139 ~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~iq  203 (204)
                      |+.++++|.++|.+  ++.++|+|+||||+||||||+.+|++...+++|+.++||.+++.++...+.
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~   67 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLL   67 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHH
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccc
Confidence            68899999999987  789999999999999999999999997777899999999999998876553

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.10  E-value=1.8e-10  Score=109.01  Aligned_cols=59  Identities=20%  Similarity=0.452  Sum_probs=50.5

Q ss_pred             CCccccchHHHHHHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Q 046665          132 GFIHFESRKSTLKEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ  192 (204)
Q Consensus       132 ~~~~~~g~~~~~~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~  192 (204)
                      +...++|++...+++..+|.  .++.++|+||||||+||||||+.+|+...  .+|+..+|+.
T Consensus       182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~  242 (1153)
T PLN03210        182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFID  242 (1153)
T ss_pred             ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEee
Confidence            34678999999999999874  45789999999999999999999999765  5699888763

syringae 6; Provisional

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.86  E-value=3.2e-09  Score=84.13  Aligned_cols=57  Identities=14%  Similarity=0.110  Sum_probs=47.2

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC--CChHhhh
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT--PQIKKIQ  203 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~iq  203 (204)
                      .++.+.. ..-..++|+|.+|+|||||++.+|++.... +|++++||+++++  +++.++|
T Consensus         6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~   65 (249)
T cd01128           6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQ   65 (249)
T ss_pred             heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHH
Confidence            4444443 456789999999999999999999987765 8999999998887  7887776

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.77  E-value=7.8e-09  Score=86.04  Aligned_cols=58  Identities=16%  Similarity=0.137  Sum_probs=47.7

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC--ChHhhh
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP--QIKKIQ  203 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~iq  203 (204)
                      ++++++.. +.-+-..|+|.+|+||||||+.||++...+ ||++++||++++.+  .+.++|
T Consensus       158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiq  218 (416)
T PRK09376        158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQ  218 (416)
T ss_pred             eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHH
Confidence            34555443 356778999999999999999999998876 89999999999998  666665

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.39  E-value=1.8e-06  Score=73.36  Aligned_cols=67  Identities=22%  Similarity=0.241  Sum_probs=55.9

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      .++++.+...+.++..|..  .+.|.++|++|+||||+|+.+.+......+|+.+.||+++++++..+.
T Consensus       175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDF  241 (459)
T PRK11331        175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDF  241 (459)
T ss_pred             hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHH
Confidence            3467788889999998874  456777999999999999999998766567899999999999886653

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.39  E-value=5.6e-07  Score=67.67  Aligned_cols=51  Identities=18%  Similarity=0.287  Sum_probs=34.5

Q ss_pred             cccchHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCC
Q 046665          135 HFESRKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLF  185 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F  185 (204)
                      .++||+.+.+++...|.   ....+.+-|+|.+|+|||||.+.++........+
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~   54 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY   54 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence            37899999999999993   3567999999999999999999999887655333

>TIGR00767 rho transcription termination factor Rho

Probab=98.39  E-value=5.3e-07  Score=75.52  Aligned_cols=50  Identities=16%  Similarity=0.098  Sum_probs=43.2

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC--CChHhhh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT--PQIKKIQ  203 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~iq  203 (204)
                      +.-..++|+|.+|+|||||++.+++....+ ||+..+||.+++.  +++.++|
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLq  217 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQ  217 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHH
Confidence            356789999999999999999999987654 8999999999977  6777765

Members of this family differ in the specificity of RNA binding.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.31  E-value=7.4e-07  Score=69.23  Aligned_cols=45  Identities=33%  Similarity=0.424  Sum_probs=38.2

Q ss_pred             ccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          136 FESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       136 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ++||+.+++.|.+++..+..+.+.|+|+.|+|||+|++.+.+..+
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~   45 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK   45 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence            579999999999999887789999999999999999999999763

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.19  E-value=6.9e-06  Score=58.62  Aligned_cols=59  Identities=17%  Similarity=0.200  Sum_probs=45.2

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ  198 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~  198 (204)
                      |++.....+...+.......+-|+|..|+|||||++.+++.....  -..++++..++...
T Consensus         2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~   60 (151)
T cd00009           2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLE   60 (151)
T ss_pred             chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhh
Confidence            677788888888877677889999999999999999999986421  13366666655443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.14  E-value=1.2e-05  Score=67.94  Aligned_cols=64  Identities=19%  Similarity=0.152  Sum_probs=47.3

Q ss_pred             CccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          133 FIHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      +..++||+.+.+.|...|.+    .....+-|+|+.|+||||+++.++++.......-..++|.....
T Consensus        29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~   96 (394)
T PRK00411         29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID   96 (394)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence            46789999999999998742    34566789999999999999999998754422223555554433

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.08  E-value=1.5e-05  Score=66.61  Aligned_cols=48  Identities=23%  Similarity=0.283  Sum_probs=41.1

Q ss_pred             CccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +..++||+.+++.|..+|.+    .....+-|+|++|+|||++++.++++..
T Consensus        14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~   65 (365)
T TIGR02928        14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE   65 (365)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            35789999999999999863    3456899999999999999999998753

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.95  E-value=8.3e-06  Score=57.19  Aligned_cols=24  Identities=38%  Similarity=0.472  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ||.|.|+.|+||||+|+.+-+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            699999999999999999998753

...

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.89  E-value=2.1e-05  Score=64.22  Aligned_cols=48  Identities=19%  Similarity=0.313  Sum_probs=40.2

Q ss_pred             ccccchHHHHHHHHHhhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          134 IHFESRKSTLKEILGSLS-----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ..++|++..++.|..++.     ...+..+-++|+.|+||||||+.+.+....
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            468999999999988885     344667889999999999999999987653

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PTZ00202 tuzin; Provisional

Probab=97.83  E-value=4.9e-05  Score=64.58  Aligned_cols=49  Identities=18%  Similarity=0.228  Sum_probs=40.7

Q ss_pred             CCccccchHHHHHHHHHhhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          132 GFIHFESRKSTLKEILGSLSN---HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       132 ~~~~~~g~~~~~~~l~~~L~~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +...++||+.+...|...|.+   +...++.|.|++|+|||||++.+.....
T Consensus       260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~  311 (550)
T PTZ00202        260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG  311 (550)
T ss_pred             CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            356799999999999988854   2356899999999999999999996543

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.81  E-value=3.2e-05  Score=60.01  Aligned_cols=49  Identities=20%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             ccccchHHHHHHHHHhhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          134 IHFESRKSTLKEILGSLS-----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      .+++|.+.-++.+.-++.     ++.+.-+-.||++|+||||||+.|-+.....
T Consensus        24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~   77 (233)
T PF05496_consen   24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN   77 (233)
T ss_dssp             CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred             HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence            578999988877655543     2457788999999999999999999987754

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.75  E-value=6.5e-05  Score=58.47  Aligned_cols=56  Identities=14%  Similarity=0.218  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      +....++.+..++.......+-|+|..|+||||||+.+++.....  ....+++.++.
T Consensus        21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~   76 (226)
T TIGR03420        21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAE   76 (226)
T ss_pred             CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHH
Confidence            455677888888766677899999999999999999999875422  33456666543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK06696 uridine kinase; Validated

Probab=97.74  E-value=6.6e-05  Score=58.66  Aligned_cols=42  Identities=26%  Similarity=0.336  Sum_probs=34.4

Q ss_pred             hHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          139 RKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       139 ~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      |.+.+++|.+.+.   .+...+|+|.|.+|+||||||+.+.+...
T Consensus         3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696          3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5566677777764   35688999999999999999999998764

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.71  E-value=6.8e-05  Score=62.24  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=41.1

Q ss_pred             cccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          135 HFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      +++|.++.++++++++..      ...+++.++|+.|+||||||+.+.+....
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            689999999999999853      24689999999999999999999987654

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.67  E-value=0.00019  Score=57.40  Aligned_cols=29  Identities=24%  Similarity=0.359  Sum_probs=25.3

Q ss_pred             CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          152 NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.....+.|+|+.|+|||||++.+++...
T Consensus        40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        40 SQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             hcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            44567899999999999999999998765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.66  E-value=8.5e-05  Score=61.41  Aligned_cols=45  Identities=20%  Similarity=0.310  Sum_probs=34.1

Q ss_pred             HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          146 ILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       146 l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      |-+++..+.+.-+-+||++|.||||||+.|-+..+...    .-+|..|
T Consensus       153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelS  197 (554)
T KOG2028|consen  153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELS  197 (554)
T ss_pred             HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEe
Confidence            33444567788999999999999999999998766443    4455555

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.65  E-value=8.1e-05  Score=61.55  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          134 IHFESRKSTLKEILGSLS-----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .+++|++..++.+..++.     ......+-++|+.|+||||||+.+.+....
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence            568999999988877764     234667889999999999999999998654

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.65  E-value=5.5e-05  Score=64.51  Aligned_cols=47  Identities=19%  Similarity=0.295  Sum_probs=38.5

Q ss_pred             ccccchHHHHHH---HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKE---ILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~---l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.   +..++..+....+-++|++|+||||||+.+.+...
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~   61 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD   61 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            357788777555   77777777777888999999999999999998754

>PRK06547 hypothetical protein; Provisional

Probab=97.63  E-value=0.00011  Score=55.10  Aligned_cols=37  Identities=24%  Similarity=0.239  Sum_probs=29.8

Q ss_pred             HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          145 EILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       145 ~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .+...+......+|+|.|..|+||||||+.+.+....
T Consensus         5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~   41 (172)
T PRK06547          5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTGF   41 (172)
T ss_pred             HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3444455677899999999999999999999876543

>PF13173 AAA_14: AAA domain

Probab=97.62  E-value=9.7e-05  Score=52.54  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      .+++.|.|+.|+|||||+++++.+..   ....++++....
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~   39 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDD   39 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCC
Confidence            46899999999999999999998755   234466665544

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.57  E-value=0.00013  Score=65.33  Aligned_cols=61  Identities=20%  Similarity=0.221  Sum_probs=45.9

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCc---eEEEEEcC
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFE---KVISAQVS  194 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~---~~~wv~vs  194 (204)
                      +.++|.+.....+...+.......+.|+|..|+||||||+.+++.......+.   ..-|+.+.
T Consensus       154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~  217 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD  217 (615)
T ss_pred             HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence            35789888888888877766677899999999999999999998765433332   23455553

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.52  E-value=9e-05  Score=52.13  Aligned_cols=21  Identities=48%  Similarity=0.800  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~  178 (204)
                      |.|.|..|+||||+|+.+.+.
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999876

...

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.51  E-value=8.3e-05  Score=52.66  Aligned_cols=49  Identities=22%  Similarity=0.310  Sum_probs=31.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccC---CCCceEEEEEcCCCCChHhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN---NLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~i  202 (204)
                      +-+.+.|+|..|+|||++++.+.++..-.   ..-...+|+..+...+...+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDF   54 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHH
Confidence            35688999999999999999999875310   01234678888776655543

>PRK04195 replication factor C large subunit; Provisional

Probab=97.50  E-value=0.00017  Score=62.84  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=40.2

Q ss_pred             ccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+...+.+.+|+..    ...+.+-|+|+.|+||||+|+.+.+...
T Consensus        14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~   64 (482)
T PRK04195         14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG   64 (482)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4588999999999999863    1268899999999999999999998764

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.48  E-value=0.00018  Score=59.36  Aligned_cols=47  Identities=19%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|++..++.+.+++..+....+-++|..|+||||+|+.+.+...
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            45789999999999998877766788999999999999999987654

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=97.47  E-value=0.00037  Score=57.22  Aligned_cols=70  Identities=17%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc----cCCCCceEEEEE-cCCCCChHhhh
Q 046665          134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK----GNNLFEKVISAQ-VSQTPQIKKIQ  203 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~----~~~~F~~~~wv~-vs~~~~~~~iq  203 (204)
                      .+++|.+..++.+.+++..+. .+..-++|+.|+||||||+.+....-    ...|+|...|.. -+++..++.|.
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir   79 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR   79 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH
Confidence            357799899999999997765 46778999999999999999998542    235778877776 45666666553

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.43  E-value=0.00051  Score=56.19  Aligned_cols=47  Identities=15%  Similarity=0.162  Sum_probs=41.0

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|++...+.+.+++..+....+-++|..|+||||+++.+.+...
T Consensus        17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            45789999999999999877777789999999999999999998753

>PRK07667 uridine kinase; Provisional

Probab=97.43  E-value=0.00021  Score=54.60  Aligned_cols=37  Identities=24%  Similarity=0.459  Sum_probs=29.1

Q ss_pred             HHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          144 KEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       144 ~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.|++.+..  ++..+|+|-|..|+||||||+.+.....
T Consensus         4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667          4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455655543  3457999999999999999999998653

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.0056  Score=54.87  Aligned_cols=48  Identities=19%  Similarity=0.185  Sum_probs=41.1

Q ss_pred             CccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.+.+|.++-+++|++++.-      -+-+++..+|++|||||.+++.|-.-..
T Consensus       410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn  463 (906)
T KOG2004|consen  410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN  463 (906)
T ss_pred             cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC
Confidence            45678999999999999852      3568999999999999999999998765

>PLN03025 replication factor C subunit; Provisional

Probab=97.41  E-value=0.00046  Score=56.87  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+...+.|.+++..++..-+-++|+.|+||||+|+.+.+..
T Consensus        13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4578888888888888877666667799999999999999998875

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.40  E-value=0.00024  Score=65.65  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++||+.+++.+++.|.....+-+-++|.+|+|||++|+.+....
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i  224 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999987655556799999999999999998764

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.40  E-value=0.00025  Score=62.21  Aligned_cols=46  Identities=15%  Similarity=0.285  Sum_probs=40.3

Q ss_pred             cccchHHHHHHHHHhhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSLS------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +++|.++.+++|++.|.      +..-+++.++|+.|+||||||+.+.+-.+
T Consensus        77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            57899999999999983      45668999999999999999999998654

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.38  E-value=0.00038  Score=54.56  Aligned_cols=28  Identities=21%  Similarity=0.399  Sum_probs=24.8

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +...+|+|.|..|+|||||++.+.....
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5678999999999999999999987654

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.37  E-value=0.00019  Score=51.66  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ||-++|+.|+||||||+.+...
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999999854

...

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.35  E-value=0.0002  Score=45.23  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +|.|.|..|+||||+++.+-+..
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999874

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.33  E-value=0.00045  Score=50.08  Aligned_cols=39  Identities=18%  Similarity=0.319  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      .+|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence            489999999999999999999987643 355555665555

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.33  E-value=0.00028  Score=56.18  Aligned_cols=29  Identities=28%  Similarity=0.414  Sum_probs=25.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      +..+|-++||+|+||||..|.++.+...+
T Consensus        18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~   46 (366)
T KOG1532|consen   18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK   46 (366)
T ss_pred             CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence            56789999999999999999999987654

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.30  E-value=0.00033  Score=61.22  Aligned_cols=48  Identities=17%  Similarity=0.185  Sum_probs=40.1

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .+++|.+...+.|.+++..+.+ ..+-++|+.|+||||+|+.+.+....
T Consensus        14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4578999988999998887664 56699999999999999999887643

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.30  E-value=0.00049  Score=55.10  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=40.6

Q ss_pred             ccccchHHHHHHHHHhhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          134 IHFESRKSTLKEILGSLS-----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      .+++|.++-++++-=++.     +..+--+-++|++|+||||||..|-+...+.
T Consensus        26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn   79 (332)
T COG2255          26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN   79 (332)
T ss_pred             HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence            467899888888766664     3467889999999999999999999987765

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.30  E-value=0.00038  Score=64.44  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=40.6

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++||+.++.+++..|......-+-++|.+|+||||||+.+....
T Consensus       187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i  232 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI  232 (852)
T ss_pred             CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999987766666799999999999999999874

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00046  Score=61.49  Aligned_cols=48  Identities=23%  Similarity=0.206  Sum_probs=40.7

Q ss_pred             CccccchHHHHHHHHHhhc----CC--CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLS----NH--NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----~~--~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.+.+|.++-+++|+++|.    .+  +-.++.+||++|+|||.|++.|-+...
T Consensus       322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~  375 (782)
T COG0466         322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG  375 (782)
T ss_pred             cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence            3567899999999999984    22  457999999999999999999998765

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.27  E-value=0.00041  Score=56.31  Aligned_cols=26  Identities=15%  Similarity=0.206  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +.+-+|||.|..|+||||||+.+-.-
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999877543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.26  E-value=0.00046  Score=63.05  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=40.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++||+.++++++..|......=+-++|.+|+|||+||+.+....
T Consensus       182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999987666666799999999999999999875

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.26  E-value=0.0006  Score=53.40  Aligned_cols=49  Identities=20%  Similarity=0.200  Sum_probs=37.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i  202 (204)
                      .-.++.|+|.+|+|||||+.++.-......    ....++|++-..+|+.+.+
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl   70 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL   70 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence            357999999999999999999975432221    1367999998888877655

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PHA00729 NTP-binding motif containing protein

Probab=97.25  E-value=0.00049  Score=53.71  Aligned_cols=36  Identities=31%  Similarity=0.475  Sum_probs=28.8

Q ss_pred             HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++++-+.+.+..-|.|.|.+|+||||||..+-+..
T Consensus         6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729          6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345555666666789999999999999999998864

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.25  E-value=0.00048  Score=62.61  Aligned_cols=47  Identities=21%  Similarity=0.384  Sum_probs=37.1

Q ss_pred             ccccchHHHHH---HHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLK---EILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~---~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..+.   .+...+..+...-+-++|++|+||||||+.+.+...
T Consensus        28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~   77 (725)
T PRK13341         28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR   77 (725)
T ss_pred             HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            45778877663   455666677777788999999999999999998654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.23  E-value=0.00053  Score=56.21  Aligned_cols=46  Identities=15%  Similarity=0.078  Sum_probs=39.7

Q ss_pred             ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+...+.+.+++..+. ..++-++|..|+||||||+.+++..
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            567899999999999998765 4677779999999999999999865

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.22  E-value=0.00038  Score=58.18  Aligned_cols=33  Identities=24%  Similarity=0.457  Sum_probs=27.2

Q ss_pred             HhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          148 GSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       148 ~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+..+++.-.-.||++|+||||||+.|-..-.
T Consensus        41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~   73 (436)
T COG2256          41 RAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN   73 (436)
T ss_pred             HHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC
Confidence            334467888888999999999999999988544

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.20  E-value=0.00035  Score=49.12  Aligned_cols=28  Identities=29%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      ...+.|+|..|+||||+++.+.......
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            3578999999999999999999876554

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.19  E-value=0.00054  Score=57.48  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=38.4

Q ss_pred             CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++.|++..++.|...+.    .         ...+-+-++|+.|+||||||+.+.+...
T Consensus       121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            4567899999999888763    1         1245689999999999999999998754

Many proteins may score above the trusted cutoff because an internal

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.17  E-value=0.00047  Score=53.21  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=27.3

Q ss_pred             hhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          149 SLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       149 ~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+..+++.+|+++|..|+|||||.+++.....
T Consensus        16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34456899999999999999999999987643

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.16  E-value=0.00062  Score=57.69  Aligned_cols=48  Identities=23%  Similarity=0.387  Sum_probs=38.3

Q ss_pred             CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++.|++..+++|...+.    .         ...+-|-++|++|+|||+||+.+.+...
T Consensus       130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~  190 (389)
T PRK03992        130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN  190 (389)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence            3567899999888887653    1         2356689999999999999999998754

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.16  E-value=0.00058  Score=63.39  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=40.3

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++||+.++..++..|....-.-+-++|.+|+||||||+.+-...
T Consensus       178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999987666666799999999999999998764

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.15  E-value=0.0007  Score=53.37  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      .-.+.|+|..|+|||||+..+..+..  +.|.++.+++-..+
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~~~n   52 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITPEYN   52 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEecCCc
Confidence            44688999999999999999998765  45988888865443

This is thought to be an ATPase involved in viral DNA packaging [].

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.15  E-value=0.00036  Score=48.46  Aligned_cols=24  Identities=38%  Similarity=0.583  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      |.|+|..|+|||||.+.+.+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~~   25 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEFP   25 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS--
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCc
Confidence            789999999999999999976543

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.14  E-value=0.0011  Score=53.01  Aligned_cols=45  Identities=13%  Similarity=0.090  Sum_probs=31.2

Q ss_pred             cccchHHHHHHH---HHhhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          135 HFESRKSTLKEI---LGSLS------------NHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       135 ~~~g~~~~~~~l---~~~L~------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++|.+..+..|   +.|..            .+...-+-++|++|+||||+|+.+.+..
T Consensus         7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881         7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            467877655444   34431            1234567899999999999999998753

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.12  E-value=0.00051  Score=48.43  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      |-|+|..|+||||||+.+.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            56899999999999999999865

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK10536 hypothetical protein; Provisional

Probab=97.11  E-value=0.0039  Score=49.62  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=36.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+.++......++.+|.+.  .++.+.|.+|.|||+||..+.-+
T Consensus        55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence            44667888888888888764  49999999999999999998875

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.09  E-value=0.0014  Score=54.49  Aligned_cols=64  Identities=19%  Similarity=0.278  Sum_probs=51.7

Q ss_pred             CccccchHHHHHHHHHhhcCCC---ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665          133 FIHFESRKSTLKEILGSLSNHN---FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK  201 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~~~---~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  201 (204)
                      .+.+.+|+.+...+..++.+.+   +..|-|+|-.|.|||.+.+++++.....     .+|+++-.-|+.+-
T Consensus         5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~   71 (438)
T KOG2543|consen    5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAI   71 (438)
T ss_pred             ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHH
Confidence            4567899999999999887654   3455789999999999999999987432     68998888777654

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.05  E-value=0.0018  Score=46.47  Aligned_cols=29  Identities=24%  Similarity=0.111  Sum_probs=25.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      .-.+|.+.|.-|.|||||++.+.+.....
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            45689999999999999999999986543

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.05  E-value=0.0022  Score=56.54  Aligned_cols=46  Identities=20%  Similarity=0.289  Sum_probs=38.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..++.|.+.+..+.+ ..+-++|+.|+||||+|+.+.+..
T Consensus        16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L   62 (546)
T PRK14957         16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL   62 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999887654 457789999999999999998754

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.02  E-value=0.0011  Score=61.67  Aligned_cols=46  Identities=24%  Similarity=0.293  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++||+.++.+++..|......-+-++|.+|+|||+||+.+....
T Consensus       173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i  218 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI  218 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            4589999999999999977666666689999999999999988764

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.02  E-value=0.00074  Score=51.71  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=24.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....+|.|+|+.|+||||||+.+....
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999865

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.02  E-value=0.0011  Score=57.55  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=38.7

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+.....|.+.+..+.+ +.+-++|+.|+||||+|+.+.+...
T Consensus        14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4588998888888888877665 5688999999999999999987643

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.02  E-value=0.0015  Score=51.51  Aligned_cols=51  Identities=14%  Similarity=0.191  Sum_probs=34.7

Q ss_pred             HHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          142 TLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      ....+-.+........+-|+|+.|+|||+|++.+++.....  -..+.++++.
T Consensus        32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~   82 (235)
T PRK08084         32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD   82 (235)
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence            44455555445556789999999999999999999865422  1234555554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.02  E-value=0.0015  Score=52.93  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          146 ILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       146 l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .-.++.+.+..+|.|+|..|+|||||+..+.+....
T Consensus        95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~  130 (290)
T PRK10463         95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD  130 (290)
T ss_pred             HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            333444568999999999999999999999987653

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.01  E-value=0.0013  Score=55.14  Aligned_cols=47  Identities=21%  Similarity=0.247  Sum_probs=39.7

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.+.+.+..+.+ +.+-++|+.|+||||||+.+.+...
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            4678999999999998877654 5678999999999999999987653

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.00  E-value=0.0013  Score=55.33  Aligned_cols=40  Identities=33%  Similarity=0.423  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhhcCC----CccEEEEEcCCCCcH-HHHHHHHHHHh
Q 046665          140 KSTLKEILGSLSNH----NFNMIGVYGMGGIGK-TMLVKEVAGQA  179 (204)
Q Consensus       140 ~~~~~~l~~~L~~~----~~~vI~IvG~gGiGK-TTLa~~v~~~~  179 (204)
                      .+....+..|+.++    +-+||++||+.|+|| |||||....-.
T Consensus       184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~  228 (407)
T COG1419         184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV  228 (407)
T ss_pred             HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            33445555565554    489999999999999 67887766544

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.98  E-value=0.00064  Score=46.81  Aligned_cols=23  Identities=48%  Similarity=0.673  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      |-|+|.+|+|||+||+.+..+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999887644

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=96.97  E-value=0.017  Score=42.15  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 046665            5 TFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH----------IEEWLISVDEVISEVRKLIEVEEK   74 (204)
Q Consensus         5 ~~~l~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~el~~l~~~l~~~----------~~~wl~~vr~~~~d~ed~ld~~~~   74 (204)
                      ++++|.+.+.|...+....+....++.-++.|...++.|...++++          -+.=+.++.+...+++++++++..
T Consensus         8 gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk   87 (147)
T PF05659_consen    8 GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSK   87 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcc
Confidence            4577777777777776666777778999999999999999988876          356778888888888888887632


Q ss_pred             hccccccccccChhHHhHHHHHHHHHHHHHHhhhh
Q 046665           75 SNNRCFNGLCPNLKTHYQLSKKAEMEVNAIVGLHE  109 (204)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~i~~  109 (204)
                      ..       .+++...++.+++|+++.+.+.....
T Consensus        88 ~~-------r~n~~kk~~y~~Ki~~le~~l~~f~~  115 (147)
T PF05659_consen   88 VR-------RWNLYKKPRYARKIEELEESLRRFIQ  115 (147)
T ss_pred             cc-------HHHHHhhHhHHHHHHHHHHHHHHHhc
Confidence            11       12455677788888888887766554

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.96  E-value=0.0018  Score=50.51  Aligned_cols=45  Identities=27%  Similarity=0.286  Sum_probs=35.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      -.++-|+|.+|+|||||+.++..+....  -..++|++.- .++.+.+
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~   67 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF   67 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence            5699999999999999999998765422  4668899887 6665544

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.92  E-value=0.00075  Score=48.65  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .|.|+|+.|+|||||++.+...
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999986

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK08727 hypothetical protein; Validated

Probab=96.92  E-value=0.0043  Score=48.79  Aligned_cols=57  Identities=14%  Similarity=0.147  Sum_probs=37.6

Q ss_pred             cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      +|.......+..+.......-+.|+|..|+|||+|++.+++....+  .-..+++++.+
T Consensus        23 ~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~   79 (233)
T PRK08727         23 AAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA   79 (233)
T ss_pred             CCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH
Confidence            3444444444444434445679999999999999999999875533  23456766543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.91  E-value=0.00086  Score=47.87  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.+++|+|..|+|||||.+.+....
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEccCCCccccceeeecccc
Confidence            4689999999999999999998653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.91  E-value=0.002  Score=50.25  Aligned_cols=38  Identities=13%  Similarity=0.255  Sum_probs=28.3

Q ss_pred             HHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          142 TLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       142 ~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....+.++... .....+-|+|..|+|||+||+.+++..
T Consensus        28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34444444432 345678899999999999999999875

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.87  E-value=0.003  Score=56.47  Aligned_cols=47  Identities=17%  Similarity=0.300  Sum_probs=39.7

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.|.+++..+++ +.+-++|..|+||||||+.+-+..-
T Consensus        16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999987765 4568899999999999999887543

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.87  E-value=0.0017  Score=51.89  Aligned_cols=42  Identities=19%  Similarity=0.260  Sum_probs=36.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      .-+++.|+|.+|+|||+++.+.-......  .+.++||+..+++
T Consensus        22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~   63 (260)
T COG0467          22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP   63 (260)
T ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH
Confidence            56899999999999999999988876633  8899999998875

>PRK06893 DNA replication initiation factor; Validated

Probab=96.86  E-value=0.0013  Score=51.54  Aligned_cols=39  Identities=23%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      ....+-++|..|+|||+|++.+.+....+  .....|++++
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~   76 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS   76 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence            34578999999999999999999975433  2345677664

>CHL00181 cbbX CbbX; Provisional

Probab=96.85  E-value=0.0033  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+-++|.+|+||||+|+.+.+..
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999997753

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.84  E-value=0.0018  Score=56.02  Aligned_cols=47  Identities=15%  Similarity=0.263  Sum_probs=40.0

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+.....|..++..+.+. .+-++|..|+||||+|+.+.+...
T Consensus        18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln   65 (484)
T PRK14956         18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN   65 (484)
T ss_pred             HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999887754 688999999999999999987643

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.84  E-value=0.0016  Score=59.55  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=39.0

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++||+.++.+++..|......-+-++|..|+|||+||+.+....
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i  231 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999998877544555689999999999999999764

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.83  E-value=0.0019  Score=53.78  Aligned_cols=46  Identities=11%  Similarity=0.232  Sum_probs=39.9

Q ss_pred             CccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          133 FIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -..++|.+..+.-|+..+.+..++-|-|.|..|+||||+|+.+++-
T Consensus        16 f~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~   61 (350)
T CHL00081         16 FTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDL   61 (350)
T ss_pred             HHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence            3568999998888888888888887779999999999999999765

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.83  E-value=0.00098  Score=52.21  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||++.+--
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhc
Confidence            456899999999999999999974

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.83  E-value=0.0018  Score=47.99  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=28.8

Q ss_pred             HHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          142 TLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++.|.++|.+   +++.++|..|+|||||.+.+..+.
T Consensus        25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence            34666776653   899999999999999999999763

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK06851 hypothetical protein; Provisional

Probab=96.82  E-value=0.069  Score=44.87  Aligned_cols=54  Identities=17%  Similarity=0.126  Sum_probs=38.3

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      |.-.-.+.|+    ++--+++.|.|..|+|||||++++......+ .++..++=|-+.+
T Consensus       201 G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP  254 (367)
T PRK06851        201 GAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP  254 (367)
T ss_pred             cHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            5444444444    3446889999999999999999999987543 3666665555444

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.81  E-value=0.0011  Score=45.56  Aligned_cols=22  Identities=36%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      -..++|+|..|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4679999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.81  E-value=0.0039  Score=57.56  Aligned_cols=47  Identities=19%  Similarity=0.289  Sum_probs=40.1

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+.+...
T Consensus        16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            46889999999999998877665 457999999999999999998754

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.80  E-value=0.0022  Score=54.54  Aligned_cols=47  Identities=19%  Similarity=0.228  Sum_probs=39.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.|.+++.++.+. -+-++|+.|+||||+|+.+-+...
T Consensus        16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~   63 (397)
T PRK14955         16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (397)
T ss_pred             hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence            46789999999999988876654 588999999999999999887653

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.79  E-value=0.0033  Score=56.15  Aligned_cols=45  Identities=16%  Similarity=0.307  Sum_probs=37.7

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+++|.+..+..|.+++..+.+ ..+-++|..|+||||+|+.+-+.
T Consensus        16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~   61 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKS   61 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678998889999999887765 56789999999999999998443

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.79  E-value=0.0011  Score=51.01  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.79  E-value=0.0013  Score=50.69  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+.|.|+|..|+|||||++.+.+.
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            5788999999999999999999764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.79  E-value=0.0011  Score=51.27  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999865

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.78  E-value=0.0011  Score=52.77  Aligned_cols=26  Identities=35%  Similarity=0.542  Sum_probs=23.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|+.|+|||||.+.++.-.
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            45799999999999999999999743

>PRK09087 hypothetical protein; Validated

Probab=96.78  E-value=0.004  Score=48.78  Aligned_cols=26  Identities=23%  Similarity=0.171  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....+.|||..|+|||+|++.+++..
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~~~~   68 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWREKS   68 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence            34679999999999999999998764

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.77  E-value=0.0071  Score=48.43  Aligned_cols=38  Identities=29%  Similarity=0.310  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          140 KSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       140 ~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-.+++..++..+  .-|-+.|..|+|||+||+.+.+..
T Consensus         8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l   45 (262)
T TIGR02640         8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR   45 (262)
T ss_pred             HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            34455566665543  345589999999999999998743

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.77  E-value=0.0032  Score=48.97  Aligned_cols=49  Identities=22%  Similarity=0.236  Sum_probs=36.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i  202 (204)
                      .-.++.|+|.+|+|||||+.++.-......    .=..++|+.....++...+
T Consensus        18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl   70 (226)
T cd01393          18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL   70 (226)
T ss_pred             CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence            357999999999999999999876533221    0045789998888877554

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=96.77  E-value=0.0023  Score=49.27  Aligned_cols=53  Identities=26%  Similarity=0.339  Sum_probs=35.1

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ  192 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~  192 (204)
                      ++.......++.|.  +..++.+.|++|.|||.||-..--+.-..++|+..+++.
T Consensus         4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R   56 (205)
T PF02562_consen    4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR   56 (205)
T ss_dssp             --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred             CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            34445566666666  567999999999999999988776544446788887774

; GO: 0005524 ATP binding; PDB: 3B85_A.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.76  E-value=0.0018  Score=52.44  Aligned_cols=27  Identities=26%  Similarity=0.380  Sum_probs=23.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.++|..|+||||++..+.....
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~  219 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFV  219 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999887654

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.76  E-value=0.0013  Score=50.78  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=27.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEE
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISA  191 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv  191 (204)
                      .-.|++|+|+.|+|||||.+-++.=+...   +-.|||
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i   61 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITV   61 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEE
Confidence            45799999999999999999998654432   235665

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.76  E-value=0.0013  Score=49.97  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.75  E-value=0.0012  Score=51.03  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=96.75  E-value=0.0031  Score=52.35  Aligned_cols=45  Identities=18%  Similarity=0.214  Sum_probs=38.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..++|.+..+..++-.+.+....-+.|.|..|.|||||++.+..-
T Consensus         4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~   48 (337)
T TIGR02030         4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL   48 (337)
T ss_pred             cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence            457899999888877777777777889999999999999999754

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.74  E-value=0.0049  Score=55.20  Aligned_cols=46  Identities=15%  Similarity=0.210  Sum_probs=39.3

Q ss_pred             ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+...+.|.+++..+. ...+-++|..|+||||+|+.+-+..
T Consensus        15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L   61 (702)
T PRK14960         15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL   61 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999998766 4577899999999999999887654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.74  E-value=0.005  Score=55.91  Aligned_cols=46  Identities=17%  Similarity=0.266  Sum_probs=38.5

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..++.|.+++..+.+ +.+-++|..|+||||+|+.+-+..
T Consensus        16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL   62 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL   62 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4688999999999999987664 455799999999999999877754

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.73  E-value=0.0053  Score=53.81  Aligned_cols=46  Identities=15%  Similarity=0.239  Sum_probs=39.3

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..++.|.+++..+.+. .+-++|+.|+||||+|+.+-+..
T Consensus        16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL   62 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            46889999999999999876654 57899999999999999988754

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.73  E-value=0.0013  Score=45.55  Aligned_cols=21  Identities=24%  Similarity=0.665  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~  178 (204)
                      |+|+|+.|+|||||.+.+.+.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.72  E-value=0.0013  Score=51.70  Aligned_cols=24  Identities=29%  Similarity=0.603  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .--.++|+|..|+|||||.+.|--
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999974

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.71  E-value=0.0015  Score=49.15  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02796 D-glycerate 3-kinase

Probab=96.71  E-value=0.0014  Score=54.21  Aligned_cols=27  Identities=30%  Similarity=0.235  Sum_probs=24.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..-+|+|.|..|+|||||++.+.....
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            456899999999999999999998764

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.71  E-value=0.0014  Score=49.33  Aligned_cols=25  Identities=32%  Similarity=0.308  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..+
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~~   44 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLYA   44 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            4568999999999999999999743

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK05439 pantothenate kinase; Provisional

Probab=96.71  E-value=0.0033  Score=51.54  Aligned_cols=27  Identities=19%  Similarity=0.245  Sum_probs=23.5

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +..-+|+|.|..|+||||||+.+..-.
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l  110 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALL  110 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999988744

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.70  E-value=0.0014  Score=51.39  Aligned_cols=25  Identities=24%  Similarity=0.510  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4468999999999999999999964

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.69  E-value=0.0015  Score=50.79  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.69  E-value=0.0072  Score=55.68  Aligned_cols=47  Identities=21%  Similarity=0.208  Sum_probs=39.4

Q ss_pred             ccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.|+.+|..      ....++.++|+.|+||||+++.+.....
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~  374 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG  374 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578999999999998852      2456899999999999999999998654

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.69  E-value=0.0017  Score=46.57  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      |-++|..|+|||+||+.+....
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999998754

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd01394 radB RadB

Probab=96.68  E-value=0.0035  Score=48.56  Aligned_cols=43  Identities=26%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ  198 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~  198 (204)
                      .-.++-|.|.+|+|||||+.++.......  =..++|++....++
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~   60 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS   60 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence            35789999999999999999988765322  23567887655553

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.68  E-value=0.0036  Score=54.88  Aligned_cols=54  Identities=24%  Similarity=0.253  Sum_probs=42.0

Q ss_pred             cccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Q 046665          135 HFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ  192 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~  192 (204)
                      ++.-..+-++++-.||.+     ...+++-+.|++|+||||.++.+.+...    |+.+=|..
T Consensus        20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n   78 (519)
T PF03215_consen   20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN   78 (519)
T ss_pred             HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence            444455677888888863     2357899999999999999999998765    77777864

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.68  E-value=0.0015  Score=50.45  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4469999999999999999999864

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.68  E-value=0.0015  Score=49.23  Aligned_cols=26  Identities=46%  Similarity=0.617  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            45699999999999999999998653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=96.68  E-value=0.0038  Score=57.56  Aligned_cols=48  Identities=27%  Similarity=0.326  Sum_probs=39.3

Q ss_pred             CccccchHHHHHHHHHhhcC----CC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLSN----HN-FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~----~~-~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +..++||+.+++.|...|.+    .. ..++-|+|+.|.|||++++.|.+...
T Consensus       754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq  806 (1164)
T PTZ00112        754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ  806 (1164)
T ss_pred             CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            35678999999999988753    23 35788999999999999999998753

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.68  E-value=0.0033  Score=53.10  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.++|+++|.+|+||||++.++.....
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~  266 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFH  266 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            457999999999999999999986554

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.67  E-value=0.0016  Score=50.35  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.67  E-value=0.0016  Score=50.59  Aligned_cols=25  Identities=32%  Similarity=0.587  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999964

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.66  E-value=0.0016  Score=51.38  Aligned_cols=25  Identities=20%  Similarity=0.390  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3469999999999999999999854

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.66  E-value=0.004  Score=49.07  Aligned_cols=52  Identities=17%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             cCCCccccchHHHHHHHHHh----hcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          130 TEGFIHFESRKSTLKEILGS----LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       130 ~~~~~~~~g~~~~~~~l~~~----L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ......++|.+.+++.|++-    +......-+-+||..|.|||+|++.+.+....
T Consensus        23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~   78 (249)
T PF05673_consen   23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD   78 (249)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence            33456789999988887764    44456777888999999999999999986543

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.66  E-value=0.0067  Score=53.44  Aligned_cols=46  Identities=17%  Similarity=0.318  Sum_probs=38.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+-+..
T Consensus        16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l   62 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL   62 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999998876654 56799999999999999997654

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.66  E-value=0.0016  Score=50.11  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999965

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.65  E-value=0.0017  Score=50.77  Aligned_cols=25  Identities=32%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   59 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4579999999999999999999965

>cd04155 Arl3 Arl3 subfamily

Probab=96.65  E-value=0.0014  Score=48.42  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +..-|+|+|..|+|||||.+.+.+.
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            3456999999999999999999985

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.64  E-value=0.0016  Score=50.29  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999865

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.64  E-value=0.0017  Score=51.13  Aligned_cols=25  Identities=24%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=96.63  E-value=0.0032  Score=55.86  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=38.9

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+...+.+.+++..+.+ +.+-++|+.|+||||+|+.+-+..
T Consensus        16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L   62 (605)
T PRK05896         16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI   62 (605)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999998876554 568899999999999999987764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.63  E-value=0.0018  Score=50.54  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-..++|+|+.|+|||||...+.--
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3458999999999999999999853

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.63  E-value=0.0017  Score=49.81  Aligned_cols=25  Identities=40%  Similarity=0.523  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4569999999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.0081  Score=50.49  Aligned_cols=49  Identities=24%  Similarity=0.311  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          134 IHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      ..+.+|+.+++++...|.+    ..+.-+-|+|..|.|||+.++.|.+..+..
T Consensus        17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~   69 (366)
T COG1474          17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES   69 (366)
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence            3488999999999988752    333449999999999999999999986643

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.62  E-value=0.002  Score=54.70  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-.+.|+|+|..|+|||||++.+.+...
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g  244 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIFN  244 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999999998643

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.62  E-value=0.0018  Score=50.29  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.62  E-value=0.0017  Score=51.06  Aligned_cols=25  Identities=32%  Similarity=0.562  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999865

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.62  E-value=0.0018  Score=50.91  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999999999999854

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.62  E-value=0.0018  Score=50.31  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.62  E-value=0.0018  Score=49.95  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.61  E-value=0.0016  Score=50.17  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +++|+|..|+|||||++.+..-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            8999999999999999999964

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.61  E-value=0.0018  Score=50.18  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|+|..|+|||||.+.+..-
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            478999999999999999999965

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.61  E-value=0.0019  Score=49.30  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999999753

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.60  E-value=0.0019  Score=50.43  Aligned_cols=26  Identities=19%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45799999999999999999998654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.60  E-value=0.0019  Score=50.00  Aligned_cols=25  Identities=32%  Similarity=0.768  Sum_probs=22.7

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .. .+++|+|..|+|||||++.+..-
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~   46 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGL   46 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence            35 89999999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06620 hypothetical protein; Validated

Probab=96.59  E-value=0.0019  Score=50.17  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.+-|+|+.|+|||+|++.+.+...
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~   69 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN   69 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC
Confidence            6689999999999999999887643

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.58  E-value=0.0032  Score=54.77  Aligned_cols=44  Identities=14%  Similarity=0.229  Sum_probs=37.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .+++|.+...+.|.+.+..+.+. -+-++|+.|+||||+|+.+-.
T Consensus        13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk   57 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL   57 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence            46789998888888888776654 788999999999999988865

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.58  E-value=0.0041  Score=52.16  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=39.6

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+...+.+.+++.++.+ ..+-++|+.|+||||+|+.+-+..
T Consensus        17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l   63 (367)
T PRK14970         17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI   63 (367)
T ss_pred             HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999987665 488899999999999999997764

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.57  E-value=0.0076  Score=54.32  Aligned_cols=45  Identities=18%  Similarity=0.331  Sum_probs=39.0

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+++|.+..+..|.+++..+.+ +-+-++|..|+||||+|+.+-+.
T Consensus        16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~   61 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS   61 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4689999999999999987664 56899999999999999988765

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.57  E-value=0.0052  Score=50.62  Aligned_cols=50  Identities=20%  Similarity=0.211  Sum_probs=38.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCC----ceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLF----EKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~iq  203 (204)
                      .-.++-|+|.+|+|||+|+-++.-+......+    ..++||+.-.+|+++.|.
T Consensus       101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~  154 (317)
T PRK04301        101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE  154 (317)
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH
Confidence            46789999999999999999998653221111    369999999988877653

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.56  E-value=0.0055  Score=50.22  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~iq  203 (204)
                      .-.++-|+|.+|+|||||+-++.-+.....    .=..++||..-.+|+.+.+.
T Consensus        94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~  147 (310)
T TIGR02236        94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM  147 (310)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH
Confidence            357889999999999999999986643210    01269999999988887664

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>TIGR00763 lon ATP-dependent protease La

Probab=96.56  E-value=0.0061  Score=56.22  Aligned_cols=47  Identities=26%  Similarity=0.233  Sum_probs=37.9

Q ss_pred             ccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.|..++..      ....++.++|+.|+||||||+.+.+...
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~  372 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN  372 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467888888888887641      1345899999999999999999998765

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.56  E-value=0.0037  Score=53.10  Aligned_cols=47  Identities=28%  Similarity=0.289  Sum_probs=36.6

Q ss_pred             ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..+++|.+.+.    .         ...+-+-++|+.|.|||+||+.+.+...
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            457888888877776542    1         1356789999999999999999998654

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.56  E-value=0.0064  Score=49.15  Aligned_cols=56  Identities=23%  Similarity=0.367  Sum_probs=40.0

Q ss_pred             HHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665          143 LKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ  198 (204)
Q Consensus       143 ~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~  198 (204)
                      -.+|+..|..  ++..||+|.|.+|+||+||.-.+-.....+.|=--++=|.=|.+|+
T Consensus        37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T   94 (323)
T COG1703          37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT   94 (323)
T ss_pred             HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence            3456666653  5778999999999999999999888776554433455555555554

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.56  E-value=0.0021  Score=50.46  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=96.56  E-value=0.0038  Score=50.22  Aligned_cols=44  Identities=25%  Similarity=0.348  Sum_probs=35.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ  198 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~  198 (204)
                      .-+-++|+|-.|+|||||++.++++...+ +-+.++++-+.+..+
T Consensus        68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~  111 (274)
T cd01133          68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTR  111 (274)
T ss_pred             cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcH
Confidence            45789999999999999999999987754 125677888877653

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.55  E-value=0.002  Score=50.16  Aligned_cols=25  Identities=28%  Similarity=0.537  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+...
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999999999999864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.55  E-value=0.002  Score=50.42  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+....
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34689999999999999999999754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.55  E-value=0.0021  Score=49.36  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999965

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.55  E-value=0.0042  Score=47.55  Aligned_cols=40  Identities=23%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      ....+..+...+-++..|.|.+|.||||+++.+.+.....
T Consensus         6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~   45 (196)
T PF13604_consen    6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA   45 (196)
T ss_dssp             HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            3444444544556788899999999999999998766543

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.54  E-value=0.0021  Score=51.27  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999964

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.54  E-value=0.002  Score=49.97  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999999999999854

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.54  E-value=0.0038  Score=44.13  Aligned_cols=29  Identities=28%  Similarity=0.227  Sum_probs=24.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      .-.||.+.|.=|.|||||+|.+.....+.
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            45899999999999999999999877554

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.54  E-value=0.002  Score=42.49  Aligned_cols=24  Identities=42%  Similarity=0.619  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ++.+.|.+|+||||++..+.....
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~   24 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALA   24 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999988764

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.54  E-value=0.0022  Score=50.11  Aligned_cols=25  Identities=32%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999975

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.54  E-value=0.0048  Score=51.32  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.+.+++..+.+ +.+-++|..|+||||+|+.+....
T Consensus        14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l   60 (355)
T TIGR02397        14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL   60 (355)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999987654 467899999999999998887664

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.54  E-value=0.0093  Score=48.74  Aligned_cols=37  Identities=24%  Similarity=0.486  Sum_probs=28.5

Q ss_pred             HHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          144 KEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       144 ~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+++.+.  .+...+|+|+|.+|+|||||+..+.....
T Consensus        21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34444443  25688999999999999999999887654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.53  E-value=0.0023  Score=52.77  Aligned_cols=27  Identities=33%  Similarity=0.428  Sum_probs=23.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+++|+.|+||||++.++.....
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            568999999999999999999987654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.53  E-value=0.0022  Score=50.27  Aligned_cols=24  Identities=29%  Similarity=0.524  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|+|..|+|||||++.+..-
T Consensus        11 Ge~~~i~G~nGsGKSTLl~~l~Gl   34 (230)
T TIGR01184        11 GEFISLIGHSGCGKSTLLNLISGL   34 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999865

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.53  E-value=0.0022  Score=50.95  Aligned_cols=25  Identities=44%  Similarity=0.729  Sum_probs=22.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.+++|+|..|+|||||++.+....
T Consensus        25 Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          25 SEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4689999999999999999998753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.52  E-value=0.0052  Score=57.32  Aligned_cols=52  Identities=23%  Similarity=0.322  Sum_probs=38.0

Q ss_pred             cccchHHHHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          135 HFESRKSTLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      .++-|.    .|.+.|.. .+.+++.|.|++|.|||||+.+..+.      ++.++|+++...
T Consensus        15 ~~~~R~----rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~   67 (903)
T PRK04841         15 NTVVRE----RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDES   67 (903)
T ss_pred             ccCcch----HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcc
Confidence            445554    44454443 46789999999999999999998752      336999999743

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.52  E-value=0.0023  Score=49.41  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999975

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.52  E-value=0.0023  Score=49.04  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+..-
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999964

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.51  E-value=0.0023  Score=50.14  Aligned_cols=25  Identities=28%  Similarity=0.606  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999999999999865

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.50  E-value=0.0021  Score=50.42  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            3468999999999999999999864

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.50  E-value=0.0022  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.548  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      -..++|+|+.|.|||||.|.+..
T Consensus        30 G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          30 GEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            37899999999999999999997

>PLN02348 phosphoribulokinase

Probab=96.50  E-value=0.0029  Score=53.28  Aligned_cols=28  Identities=18%  Similarity=0.322  Sum_probs=25.1

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +..-+|+|.|..|+||||||+.+.+...
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4678999999999999999999998764

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.49  E-value=0.0039  Score=55.86  Aligned_cols=47  Identities=17%  Similarity=0.244  Sum_probs=39.1

Q ss_pred             ccccchHHHHHHHHHhhcCC-----CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNH-----NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~-----~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.+..||.+.     ..+++.++|+.|+||||+++.+.+...
T Consensus        84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~  135 (637)
T TIGR00602        84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG  135 (637)
T ss_pred             HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence            56789998999999998653     345799999999999999999997643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10646 ADP-binding protein; Provisional

Probab=96.49  E-value=0.0071  Score=44.38  Aligned_cols=28  Identities=25%  Similarity=0.284  Sum_probs=24.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      -.||.+.|-=|.||||++|.+.....+.
T Consensus        28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~   55 (153)
T PRK10646         28 ATVIYLYGDLGAGKTTFSRGFLQALGHQ   55 (153)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4589999999999999999999987654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.49  E-value=0.0024  Score=49.97  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.48  E-value=0.0044  Score=52.07  Aligned_cols=27  Identities=22%  Similarity=0.362  Sum_probs=23.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +-.++.++|+.|+||||++.++-....
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357999999999999999999987643

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.48  E-value=0.0024  Score=50.32  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+....
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.47  E-value=0.0023  Score=50.34  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.47  E-value=0.0073  Score=48.69  Aligned_cols=28  Identities=32%  Similarity=0.512  Sum_probs=23.7

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ++.++|.++|.+|+||||++.++.....
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~   97 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLK   97 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3568999999999999998888876654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=96.47  E-value=0.0041  Score=46.37  Aligned_cols=35  Identities=11%  Similarity=0.124  Sum_probs=26.3

Q ss_pred             HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+.+++...+...|.++|.+|+|||||...+...
T Consensus         4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~   38 (174)
T cd04153           4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG   38 (174)
T ss_pred             hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence            34555554444567889999999999999999754

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.47  E-value=0.0044  Score=54.63  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=37.5

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+++|.+..+..+...+......-+-|+|..|+||||+|+.+++.
T Consensus        65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~  109 (531)
T TIGR02902        65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE  109 (531)
T ss_pred             HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            357899888888888776665666789999999999999999874

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>cd00879 Sar1 Sar1 subfamily

Probab=96.47  E-value=0.0021  Score=48.41  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...|.|+|.+|+|||||++.+.++
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~   42 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDD   42 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            455699999999999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK10908 cell division protein FtsE; Provisional

Probab=96.47  E-value=0.0026  Score=49.50  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGI   51 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.46  E-value=0.0089  Score=50.13  Aligned_cols=55  Identities=15%  Similarity=0.145  Sum_probs=39.8

Q ss_pred             HHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCce-EEEEEcCCCC
Q 046665          142 TLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEK-VISAQVSQTP  197 (204)
Q Consensus       142 ~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~-~~wv~vs~~~  197 (204)
                      ...++++.+.. +.-.-+.|+|..|+|||||++.+.+..... +=+. ++|+.+.+..
T Consensus       119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~  175 (380)
T PRK12608        119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERP  175 (380)
T ss_pred             hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCC
Confidence            34557777764 445677999999999999999998876433 1233 5787877665

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.46  E-value=0.0084  Score=53.84  Aligned_cols=46  Identities=17%  Similarity=0.248  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..++.|.+.+..+.+. .+-++|..|+||||+|+.+.+..
T Consensus        16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L   62 (647)
T PRK07994         16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL   62 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            46889999999999988876654 46789999999999999997754

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.46  E-value=0.0026  Score=49.00  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.46  E-value=0.0027  Score=48.51  Aligned_cols=26  Identities=38%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||.+.+....
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998753

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.46  E-value=0.0066  Score=52.57  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFE  186 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~  186 (204)
                      ..++|+++.++.+...+..  -.-+-+.|.+|+|||+||+.+.....-...|.
T Consensus        20 ~~i~gre~vI~lll~aala--g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~   70 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNARAFE   70 (498)
T ss_pred             hhccCcHHHHHHHHHHHcc--CCCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence            4578999998888887763  34577899999999999999998654333454

>PLN02200 adenylate kinase family protein

Probab=96.46  E-value=0.0035  Score=49.42  Aligned_cols=27  Identities=19%  Similarity=0.100  Sum_probs=23.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.|.|+.|+||||+|+.+.+...
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999987543

>PRK14974 cell division protein FtsY; Provisional

Probab=96.45  E-value=0.012  Score=48.76  Aligned_cols=27  Identities=30%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +..+|.++|+.|+||||++.++.....
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~  165 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLK  165 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999998888877654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.45  E-value=0.0026  Score=50.14  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRL   50 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.45  E-value=0.0027  Score=48.35  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|.|||||++.+..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            456999999999999999999995

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.45  E-value=0.01  Score=48.20  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -+-++|.+|.||||+|+.+....
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHH
Confidence            57799999999999997766543

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.45  E-value=0.0027  Score=45.98  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +-|-++|..|+|||||++.+...+
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            457899999999999999999764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.45  E-value=0.0027  Score=48.87  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999999753

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.44  E-value=0.0027  Score=49.21  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+..-
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.44  E-value=0.0049  Score=53.93  Aligned_cols=47  Identities=17%  Similarity=0.233  Sum_probs=39.0

Q ss_pred             ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..+..|.+.+..+. ..-+-++|..|+||||+|+.+.+..-
T Consensus        21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln   68 (507)
T PRK06645         21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN   68 (507)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            457899998888888776655 46788999999999999999988653

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=96.44  E-value=0.014  Score=47.47  Aligned_cols=94  Identities=10%  Similarity=0.099  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 046665            4 VTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH----------IEEWLISVDEVISEVRKLIEVEE   73 (204)
Q Consensus         4 v~~~l~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~el~~l~~~l~~~----------~~~wl~~vr~~~~d~ed~ld~~~   73 (204)
                      |.+++++|-+....    ....+.-++.+++-++.+++.++.+++.+          .+.+..++-+.||++|.++|.+-
T Consensus       298 VdFlL~NLkdfq~r----ysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi  373 (402)
T PF12061_consen  298 VDFLLKNLKDFQGR----YSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI  373 (402)
T ss_pred             HHHHHhhHHHHhcc----ccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence            44566666555443    33445568999999999999999999976          67899999999999999998752


Q ss_pred             hhccccccccccChhHHhHHHHHHHHHHHHHH
Q 046665           74 KSNNRCFNGLCPNLKTHYQLSKKAEMEVNAIV  105 (204)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~  105 (204)
                      ....   ..|| ..+..+.+...|.-++++++
T Consensus       374 ~k~~---P~Wc-l~~WL~dIieei~~ik~~i~  401 (402)
T PF12061_consen  374 SKSV---PHWC-LERWLLDIIEEITCIKAKIQ  401 (402)
T ss_pred             cCCC---cHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            2111   1111 13344556666666666554

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.44  E-value=0.0028  Score=56.03  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ++..+|+|.|..|+||||||+.+....
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL   89 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM   89 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence            467899999999999999999998753

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.44  E-value=0.0077  Score=52.69  Aligned_cols=48  Identities=31%  Similarity=0.386  Sum_probs=33.9

Q ss_pred             CccccchHHHHHHHHHh---hcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGS---LSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~---L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.++.|.+..++++.++   +.+         ...+-+-++|++|+|||+||+.+.+...
T Consensus        54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~  113 (495)
T TIGR01241        54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG  113 (495)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence            34577887766555443   322         1234588999999999999999998654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.44  E-value=0.0027  Score=50.77  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl   61 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGL   61 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.44  E-value=0.0027  Score=50.41  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999853

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.43  E-value=0.0026  Score=50.35  Aligned_cols=25  Identities=20%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.--
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRM   50 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.43  E-value=0.0027  Score=49.37  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.43  E-value=0.0029  Score=48.47  Aligned_cols=26  Identities=35%  Similarity=0.480  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45789999999999999999998753

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.42  E-value=0.0044  Score=55.47  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=38.5

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.|.+++..+.+ .-+-++|+.|+||||+|+.+-+..
T Consensus        16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L   62 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV   62 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999998877665 458899999999999998887654

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.42  E-value=0.0029  Score=48.68  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.42  E-value=0.0028  Score=50.45  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl   53 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGL   53 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999965

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.42  E-value=0.0031  Score=47.18  Aligned_cols=25  Identities=24%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+..-
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999999965

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.42  E-value=0.0059  Score=46.24  Aligned_cols=35  Identities=23%  Similarity=0.130  Sum_probs=25.8

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...++.+... .-..+.|+|..|+|||||++.+..-
T Consensus        14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3334443333 3578999999999999999998864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.40  E-value=0.0029  Score=50.19  Aligned_cols=24  Identities=17%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|.|||||++.+.-
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         28 EKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            456899999999999999999964

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.40  E-value=0.0031  Score=47.48  Aligned_cols=26  Identities=35%  Similarity=0.625  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+....
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999753

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.40  E-value=0.0031  Score=46.88  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999999753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.39  E-value=0.0028  Score=48.54  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ++++|+|..|+|||||++.++-
T Consensus        23 g~~~i~G~nGsGKStll~al~~   44 (197)
T cd03278          23 GLTAIVGPNGSGKSNIIDAIRW   44 (197)
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3889999999999999999974

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.39  E-value=0.0027  Score=50.57  Aligned_cols=27  Identities=26%  Similarity=0.446  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-.++++||-.|+|||||++.+-.=.+
T Consensus        38 ~ge~~glVGESG~GKSTlgr~i~~L~~   64 (268)
T COG4608          38 EGETLGLVGESGCGKSTLGRLILGLEE   64 (268)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence            567899999999999999999986544

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.39  E-value=0.003  Score=49.72  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl   70 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGL   70 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999964

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.39  E-value=0.0059  Score=52.47  Aligned_cols=47  Identities=26%  Similarity=0.382  Sum_probs=36.1

Q ss_pred             ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..++.|.+.+.    .         ....-+.++|..|.|||+||+.+.+...
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~  242 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS  242 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            456788888887777652    1         1345678999999999999999999654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.39  E-value=0.0032  Score=45.73  Aligned_cols=26  Identities=38%  Similarity=0.594  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            45789999999999999999998753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PLN02165 adenylate isopentenyltransferase

Probab=96.38  E-value=0.0033  Score=51.86  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             hcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +.+..-.+|.|+|+.|+||||||..+....
T Consensus        38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l   67 (334)
T PLN02165         38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF   67 (334)
T ss_pred             ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence            345566799999999999999999998764

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=96.38  E-value=0.015  Score=43.99  Aligned_cols=36  Identities=19%  Similarity=0.269  Sum_probs=27.9

Q ss_pred             HHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          145 EILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       145 ~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+.+.+..+++ ..+-++|..|+||||+|+.+-+..-
T Consensus         3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678         3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            35555555555 6789999999999999998877643

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=96.38  E-value=0.003  Score=50.34  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+.-.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4578999999999999999999964

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.38  E-value=0.0083  Score=52.47  Aligned_cols=47  Identities=23%  Similarity=0.343  Sum_probs=36.7

Q ss_pred             ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..++.|...+.    .         ...+-|-++|+.|.|||++|+.+++...
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence            446788888888777653    1         1345688999999999999999999764

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.38  E-value=0.0031  Score=48.74  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=23.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.++...
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45789999999999999999999753

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.38  E-value=0.003  Score=50.02  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.38  E-value=0.0029  Score=49.81  Aligned_cols=25  Identities=32%  Similarity=0.476  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999975

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.38  E-value=0.0033  Score=46.60  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.38  E-value=0.003  Score=48.54  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccC
Confidence            45699999999999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.37  E-value=0.0031  Score=49.54  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (237)
T cd03252          27 PGEVVGIVGRSGSGKSTLTKLIQRF   51 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.37  E-value=0.003  Score=50.19  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGF   54 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.36  E-value=0.0031  Score=49.90  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLL   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.36  E-value=0.0031  Score=49.74  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRL   52 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999964

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.36  E-value=0.0032  Score=49.60  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKL   50 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.36  E-value=0.0033  Score=46.97  Aligned_cols=25  Identities=36%  Similarity=0.578  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.36  E-value=0.0032  Score=50.23  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.-.
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~   61 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLM   61 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999853

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.35  E-value=0.011  Score=47.08  Aligned_cols=41  Identities=24%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             HHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          142 TLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       142 ~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      ....++..|..  ++..+|+|.|.+|+||+||.-.+-.....+
T Consensus        14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~   56 (266)
T PF03308_consen   14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER   56 (266)
T ss_dssp             HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence            34455665543  467899999999999999999888776543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.35  E-value=0.015  Score=52.02  Aligned_cols=47  Identities=13%  Similarity=0.227  Sum_probs=39.3

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.|.+++..+.+ +.+-++|..|+||||+|+.+.+...
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4688999999999998877654 4567999999999999999987653

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=96.35  E-value=0.0025  Score=45.60  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -|.|+|.+|+|||||++.+.+..
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~   24 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEE   24 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCc
Confidence            37899999999999999987653

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.35  E-value=0.0054  Score=53.20  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+||+++|..|+||||++.++.....
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~  281 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCV  281 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHH
Confidence            47999999999999999999997653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=96.34  E-value=0.0031  Score=51.51  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl   42 (302)
T TIGR01188        18 EGEVFGFLGPNGAGKTTTIRMLTTL   42 (302)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4468999999999999999999964

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.34  E-value=0.0033  Score=50.53  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl   73 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRL   73 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4579999999999999999999864

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.34  E-value=0.0035  Score=47.06  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+....
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            45689999999999999999998753

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.33  E-value=0.0036  Score=46.68  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||.+.+..-.
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45689999999999999999998753

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.33  E-value=0.0034  Score=47.32  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||.+.+..-.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34689999999999999999999653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.33  E-value=0.003  Score=50.61  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRH   60 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4569999999999999999999964

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=96.33  E-value=0.0059  Score=46.03  Aligned_cols=36  Identities=28%  Similarity=0.395  Sum_probs=27.3

Q ss_pred             HHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          143 LKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       143 ~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +.++..++.. .....|.++|..|+|||||++.+..+
T Consensus         4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~   40 (184)
T smart00178        4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND   40 (184)
T ss_pred             HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence            3456665532 44567889999999999999998864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01878 HflX HflX subfamily

Probab=96.33  E-value=0.0037  Score=47.76  Aligned_cols=26  Identities=19%  Similarity=0.427  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....|+|+|.+|+|||||.+.+.+..
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcch
Confidence            45689999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=96.33  E-value=0.0068  Score=49.79  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=23.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-..|.++|+.|+||||+++.+....+
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg  158 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLG  158 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            467899999999999999999987654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=96.33  E-value=0.0033  Score=49.83  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||++.+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239         30 PNEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999974

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.33  E-value=0.013  Score=48.57  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=28.9

Q ss_pred             HHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          144 KEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       144 ~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..|++.+.  .++..+|+|.|..|+|||||+..+.....
T Consensus        43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~   81 (332)
T PRK09435         43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI   81 (332)
T ss_pred             HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44555554  35678999999999999999999877655

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.32  E-value=0.0035  Score=48.63  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+..-
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~   53 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGL   53 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4579999999999999999999864

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.32  E-value=0.0036  Score=48.00  Aligned_cols=25  Identities=36%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+..-
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGL   49 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999865

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.32  E-value=0.0033  Score=49.11  Aligned_cols=25  Identities=36%  Similarity=0.542  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+..-
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGL   49 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4579999999999999999999964

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.32  E-value=0.0038  Score=49.61  Aligned_cols=25  Identities=16%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +..+.+|+|..|+|||||+..|+--
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~l   48 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICFV   48 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999843

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.32  E-value=0.0032  Score=50.79  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl   56 (280)
T PRK13649         32 DGSYTAFIGHTGSGKSTIMQLLNGL   56 (280)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.32  E-value=0.0034  Score=50.11  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.--
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4578999999999999999999854

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=96.31  E-value=0.0035  Score=50.44  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl   73 (271)
T PRK14238         49 ENEVTAIIGPSGCGKSTYIKTLNRM   73 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4579999999999999999999864

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=96.31  E-value=0.0033  Score=50.46  Aligned_cols=25  Identities=36%  Similarity=0.623  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQ   56 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.31  E-value=0.0028  Score=45.05  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      +-++|..|+||||||+.+-.....
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~   25 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGL   25 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT-
T ss_pred             EeeECCCccHHHHHHHHHHHHcCC
Confidence            568999999999999999987653

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK12377 putative replication protein; Provisional

Probab=96.31  E-value=0.005  Score=48.94  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=30.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      +..-+.++|..|+|||+||..+.+...-+  .-.+++++++
T Consensus       100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~  138 (248)
T PRK12377        100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP  138 (248)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH
Confidence            34678999999999999999999987633  3346777764

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.31  E-value=0.0036  Score=48.26  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||.+.+..-.
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.31  E-value=0.0034  Score=50.50  Aligned_cols=25  Identities=28%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   56 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGF   56 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999865

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.30  E-value=0.0036  Score=49.03  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+..-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRF   51 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.17  Score=46.34  Aligned_cols=46  Identities=20%  Similarity=0.288  Sum_probs=36.6

Q ss_pred             ccccchHHHHHHHHHhhc---------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLS---------NHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~---------~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.+.+.+.         +..++++-.+|+.|||||-||+.+-...
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L  545 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL  545 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence            457899998888888764         1246788889999999999999887643

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=96.30  E-value=0.0035  Score=49.91  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         30 AGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999753

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.30  E-value=0.0036  Score=49.69  Aligned_cols=25  Identities=16%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRM   53 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999999864

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.30  E-value=0.0033  Score=50.54  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGL   50 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            3468999999999999999999864

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.29  E-value=0.0035  Score=48.11  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +++.|+|..|.|||||.+.|.-.
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            89999999999999999999754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.29  E-value=0.0036  Score=49.88  Aligned_cols=26  Identities=27%  Similarity=0.509  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+..-.
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999753

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.29  E-value=0.0036  Score=49.16  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            4579999999999999999999975

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.29  E-value=0.0035  Score=50.86  Aligned_cols=25  Identities=24%  Similarity=0.400  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   60 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGL   60 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.28  E-value=0.0081  Score=51.28  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +..+|+++|..|+||||++.++-..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3579999999999999999988654

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=96.28  E-value=0.018  Score=48.97  Aligned_cols=45  Identities=11%  Similarity=0.153  Sum_probs=36.8

Q ss_pred             ccccchHHHHHHHHHhhcCCC----------ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHN----------FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~----------~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..++|.+..++.|.+++..+.          .+-+-++|+.|+||||+|+.+-..
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~   59 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAA   59 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            457899998999999887643          456789999999999999998654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.28  E-value=0.0036  Score=48.83  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+....
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999753

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=96.27  E-value=0.0038  Score=50.08  Aligned_cols=25  Identities=16%  Similarity=0.305  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   68 (267)
T PRK14235         44 EKTVTAFIGPSGCGKSTFLRCLNRM   68 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4578999999999999999999864

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=96.27  E-value=0.0043  Score=46.79  Aligned_cols=28  Identities=21%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+|.|.|..|+||||||+.+.....
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999997653

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=96.27  E-value=0.0035  Score=51.83  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll   57 (326)
T PRK11022         32 QGEVVGIVGESGSGKSVSSLAIMGLI   57 (326)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            45789999999999999999998753

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=96.27  E-value=0.0035  Score=48.53  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      -.+++|+|..|+|||||++.|.
T Consensus        28 ~~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          28 NGLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             cCEEEEECCCCCCHHHHHHHhe
Confidence            4589999999999999999986

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.27  E-value=0.0076  Score=49.58  Aligned_cols=50  Identities=22%  Similarity=0.164  Sum_probs=37.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~iq  203 (204)
                      .-+++-|+|..|+|||+|+.++.-.....    ..=..++||+.-.+|+++.|.
T Consensus        95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~  148 (313)
T TIGR02238        95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR  148 (313)
T ss_pred             CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH
Confidence            35788999999999999998876432211    112468999999999888765

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.26  E-value=0.004  Score=52.93  Aligned_cols=27  Identities=30%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+-+|+|.|..|+|||||++.+..-..
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~  237 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFR  237 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            467999999999999999999975443

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.26  E-value=0.0039  Score=49.42  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|.|||||++.+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999995

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=96.26  E-value=0.004  Score=48.45  Aligned_cols=28  Identities=29%  Similarity=0.527  Sum_probs=24.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .-.+++++|..|+|||||.+.|+.-.+.
T Consensus        28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~   55 (237)
T COG0410          28 RGEIVALLGRNGAGKTTLLKTIMGLVRP   55 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4578999999999999999999976554

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=96.26  E-value=0.004  Score=48.27  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.++...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          26 TGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            45799999999999999999999653

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.25  E-value=0.0038  Score=49.52  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3468999999999999999999864

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.25  E-value=0.0038  Score=49.54  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTL   49 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.25  E-value=0.004  Score=48.29  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      ..+++|+|+.|.|||||.+.|.
T Consensus        25 ~~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          25 KSFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3799999999999999999987

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=96.25  E-value=0.0037  Score=49.73  Aligned_cols=26  Identities=31%  Similarity=0.521  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (256)
T TIGR03873        26 PGSLTGLLGPNGSGKSTLLRLLAGAL   51 (256)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            45689999999999999999998653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.25  E-value=0.0067  Score=53.06  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+|+|+|.+|+||||++.++....
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            35899999999999999998887653

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=96.25  E-value=0.004  Score=49.88  Aligned_cols=25  Identities=16%  Similarity=0.302  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+..-
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   59 (264)
T PRK14243         35 KNQITAFIGPSGCGKSTILRCFNRL   59 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4579999999999999999999853

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.25  E-value=0.004  Score=48.83  Aligned_cols=26  Identities=15%  Similarity=0.230  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45689999999999999999999653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.24  E-value=0.004  Score=48.19  Aligned_cols=25  Identities=36%  Similarity=0.429  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~   60 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGL   60 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999965

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.24  E-value=0.0038  Score=50.08  Aligned_cols=24  Identities=17%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|.|||||++.+..
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999999975

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.24  E-value=0.0074  Score=53.70  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=39.5

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+...+.|.+++..+.+. .+-++|..|+||||+|+.+-+..-
T Consensus        13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   60 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN   60 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46789999999999999876654 578999999999999999887543

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.24  E-value=0.0041  Score=48.55  Aligned_cols=26  Identities=27%  Similarity=0.576  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+..-.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            44689999999999999999998653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=96.23  E-value=0.0038  Score=49.46  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         32 KGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4569999999999999999999863

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.23  E-value=0.004  Score=50.02  Aligned_cols=25  Identities=16%  Similarity=0.339  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.23  E-value=0.0041  Score=49.41  Aligned_cols=25  Identities=16%  Similarity=0.385  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRM   56 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4569999999999999999999864

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.23  E-value=0.004  Score=50.28  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (279)
T PRK13650         32 QGEWLSIIGHNGSGKSTTVRLIDGL   56 (279)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999965

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.22  E-value=0.004  Score=50.05  Aligned_cols=25  Identities=24%  Similarity=0.454  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGL   58 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4569999999999999999999865

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.22  E-value=0.0042  Score=49.58  Aligned_cols=26  Identities=35%  Similarity=0.593  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||.+.+.--.
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~   50 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKL   50 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45699999999999999999999654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=96.22  E-value=0.0042  Score=49.82  Aligned_cols=26  Identities=15%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+....
T Consensus        45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         45 KNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            45689999999999999999999753

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=96.22  E-value=0.0041  Score=49.48  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (255)
T PRK11231         27 TGKITALIGPNGCGKSTLLKCFARL   51 (255)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.22  E-value=0.0065  Score=50.12  Aligned_cols=45  Identities=20%  Similarity=0.131  Sum_probs=34.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK  201 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  201 (204)
                      -+++-|+|.+|+||||||-++.-.....  -..++||..-..++...
T Consensus        55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~~   99 (325)
T cd00983          55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPVY   99 (325)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHHH
Confidence            5688899999999999999987654322  35688988877766543

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.22  E-value=0.0039  Score=49.48  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||++.+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         31 KNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999984

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.22  E-value=0.0092  Score=51.04  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=23.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.++|..|+||||++.++-....
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~  125 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ  125 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999998876554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=96.21  E-value=0.0041  Score=49.44  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.-.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   52 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGI   52 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=96.21  E-value=0.015  Score=48.63  Aligned_cols=48  Identities=15%  Similarity=0.133  Sum_probs=40.2

Q ss_pred             CccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...++|.+.....+...+..+.+ .-+-++|..|+||||||+.+-+..-
T Consensus        22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll   70 (351)
T PRK09112         22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL   70 (351)
T ss_pred             hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence            35689999999999999887654 5688999999999999998877643

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.21  E-value=0.0041  Score=50.30  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+..-.
T Consensus        32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640         32 RGSWTALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhccc
Confidence            35699999999999999999999653

>cd01858 NGP_1 NGP-1

Probab=96.21  E-value=0.0087  Score=43.89  Aligned_cols=43  Identities=12%  Similarity=0.241  Sum_probs=29.2

Q ss_pred             chHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          138 SRKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       138 g~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      |.+.-.+.|.+++.   ......|+++|+.|+|||||...+..+..
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~  127 (157)
T cd01858          82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV  127 (157)
T ss_pred             cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence            44444455544432   12345688999999999999999987644

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.20  E-value=0.01  Score=49.20  Aligned_cols=48  Identities=15%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             CccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...++|.++.+++|++.+..      ..-+|+-+.|+-|.|||||++.+.+-.+
T Consensus        60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le  113 (358)
T PF08298_consen   60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE  113 (358)
T ss_pred             cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35789999999999999853      3568999999999999999999988655

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.20  E-value=0.0042  Score=48.65  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.--
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGF   48 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999999999999854

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.20  E-value=0.0043  Score=49.48  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   56 (259)
T PRK14260         32 RNKVTAIIGPSGCGKSTFIKTLNRI   56 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999964

>PRK05642 DNA replication initiation factor; Validated

Probab=96.20  E-value=0.008  Score=47.32  Aligned_cols=38  Identities=16%  Similarity=0.349  Sum_probs=28.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      ...+-|+|..|+|||.|++.+++....+.  ..++|++..
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~   82 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLA   82 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHH
Confidence            46789999999999999999988654221  235666653

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.20  E-value=0.0042  Score=49.54  Aligned_cols=25  Identities=24%  Similarity=0.586  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~i~G~   51 (258)
T PRK13548         27 PGEVVAILGPNGAGKSTLLRALSGE   51 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999865

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.20  E-value=0.0097  Score=50.04  Aligned_cols=43  Identities=21%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          139 RKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       139 ~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ..++.+.+.....   -....+|+|+|..|+|||||+..+....+.
T Consensus       186 TpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~  231 (366)
T PRK14489        186 TPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIA  231 (366)
T ss_pred             CHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            3345556555432   125779999999999999999999987654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.20  E-value=0.0043  Score=50.00  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|.|||||++.+..
T Consensus        45 ~Ge~~~IiG~nGsGKSTLl~~l~G   68 (274)
T PRK14265         45 AKKIIAFIGPSGCGKSTLLRCFNR   68 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999984

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=96.19  E-value=0.006  Score=42.69  Aligned_cols=23  Identities=35%  Similarity=0.559  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      |.+.|.||+||||++..+.....
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~   24 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLA   24 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999987654

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.19  E-value=0.0081  Score=53.64  Aligned_cols=46  Identities=13%  Similarity=0.263  Sum_probs=39.4

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..++.|.+++..+.+ .-+-++|+.|+||||+|+.+-+..
T Consensus        24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L   70 (598)
T PRK09111         24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL   70 (598)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            4688999999999999887664 468899999999999999997754

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=96.19  E-value=0.0039  Score=54.42  Aligned_cols=24  Identities=33%  Similarity=0.542  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|||-.|+||||||+.+-.=
T Consensus       317 GE~lglVGeSGsGKSTlar~i~gL  340 (539)
T COG1123         317 GETLGLVGESGSGKSTLARILAGL  340 (539)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999863

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=96.19  E-value=0.0045  Score=47.69  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      .+++|+|..|+|||||...++
T Consensus        23 g~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          23 PLTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            499999999999999999995

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.18  E-value=0.0047  Score=48.35  Aligned_cols=24  Identities=29%  Similarity=0.620  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +-..|+|+|..|.|||||.+.+..
T Consensus        29 ~GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          29 QGEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhc
Confidence            456899999999999999999986

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=96.18  E-value=0.0043  Score=51.71  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        30 ~Gei~~iiG~nGsGKSTLlk~L~Gl   54 (343)
T PRK11153         30 AGEIFGVIGASGAGKSTLIRCINLL   54 (343)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999864

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.18  E-value=0.0045  Score=49.10  Aligned_cols=24  Identities=17%  Similarity=0.386  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|.|||||++.+.-
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999974

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.18  E-value=0.0045  Score=49.71  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+..-
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4569999999999999999999864

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=96.17  E-value=0.0041  Score=49.17  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         26 PGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999986

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.17  E-value=0.0045  Score=48.32  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+..-
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=96.17  E-value=0.0044  Score=51.65  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||.+.+..-.
T Consensus        30 ~Gei~gIiG~sGaGKSTLlr~I~gl~   55 (343)
T TIGR02314        30 AGQIYGVIGASGAGKSTLIRCVNLLE   55 (343)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998643

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=96.17  E-value=0.0046  Score=49.00  Aligned_cols=24  Identities=17%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||.+.+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNR   51 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999985

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.17  E-value=0.0044  Score=49.15  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (251)
T PRK14270         29 ENKITALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999999964

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=96.16  E-value=0.0045  Score=51.31  Aligned_cols=26  Identities=27%  Similarity=0.556  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.|..-.
T Consensus        32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         32 EGEIRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccC
Confidence            45689999999999999999998753

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.16  E-value=0.011  Score=46.40  Aligned_cols=41  Identities=27%  Similarity=0.291  Sum_probs=31.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHH-HHhccCCCCceEEEEEcCCCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVA-GQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~-~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      .-+++.|+|..|+|||||+.++. +..+.   =..++|++..+++
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~   65 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTS   65 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCH
Confidence            46799999999999999999984 43331   2468888887765

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.16  E-value=0.0048  Score=48.09  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+..-
T Consensus        39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   63 (226)
T cd03248          39 PGEVTALVGPSGSGKSTVVALLENF   63 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4579999999999999999999865

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.16  E-value=0.0048  Score=47.86  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244          29 PGEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4568999999999999999999864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.16  E-value=0.0076  Score=51.33  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..+|.++|.+|+||||++.++-...
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998643

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.16  E-value=0.0047  Score=48.84  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         27 QNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3468999999999999999999864

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.15  E-value=0.0046  Score=49.84  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~laG~   50 (272)
T PRK13547         26 PGRVTALLGRNGAGKSTLLKALAGD   50 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

>TIGR02012 tigrfam_recA protein RecA

Probab=96.15  E-value=0.0085  Score=49.36  Aligned_cols=45  Identities=18%  Similarity=0.144  Sum_probs=33.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIK  200 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  200 (204)
                      .-+++-|+|..|+||||||-++.......  =..++||..-+.++..
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~   98 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV   98 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH
Confidence            34799999999999999999877654322  3557788776666543

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.15  E-value=0.0084  Score=48.12  Aligned_cols=41  Identities=27%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      |......+.+..+....-++|.|.|..|+||||+++.+.+.
T Consensus        63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~  103 (264)
T cd01129          63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE  103 (264)
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence            43333333444444556678999999999999999987654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.14  E-value=0.0048  Score=48.89  Aligned_cols=25  Identities=16%  Similarity=0.349  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251         29 EKELTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            3468999999999999999999964

>COG3899 Predicted ATPase [General function prediction only]

Probab=96.14  E-value=0.0092  Score=55.50  Aligned_cols=46  Identities=28%  Similarity=0.415  Sum_probs=39.7

Q ss_pred             cccchHHHHHHHHHhhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSLSN---HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +++||+.+.+.|...+.+   +...++.+.|..|||||+|++.|.....
T Consensus         1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~   49 (849)
T COG3899           1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT   49 (849)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh
Confidence            368999999999998863   5677999999999999999999998644

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=96.14  E-value=0.0083  Score=49.78  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=36.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..++|.+..+..+.-.+.+.+..-+-+.|..|.||||||+.+-+-
T Consensus         8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l   52 (334)
T PRK13407          8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL   52 (334)
T ss_pred             HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence            457899988887776555555566899999999999999999654

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]

Probab=96.14  E-value=0.0068  Score=50.35  Aligned_cols=38  Identities=24%  Similarity=0.444  Sum_probs=32.8

Q ss_pred             cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHH
Q 046665          137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKE  174 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~  174 (204)
                      .+|..+..--+++|+++++..+++.|.+|.|||-||-.
T Consensus       227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALa  264 (436)
T COG1875         227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALA  264 (436)
T ss_pred             CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHH
Confidence            45666777888899999999999999999999988753

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=96.13  E-value=0.0045  Score=48.73  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      ..+.+|+|..|.|||||.+.|+
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999998

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.12  E-value=0.0098  Score=50.64  Aligned_cols=48  Identities=23%  Similarity=0.252  Sum_probs=36.0

Q ss_pred             ccccchHHHHHHHHHhhcCC--------------CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          134 IHFESRKSTLKEILGSLSNH--------------NFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~--------------~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ..++|.+..++.+.-.+.++              ..+-|-++|+.|+||||||+.+-.....
T Consensus        12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~   73 (441)
T TIGR00390        12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA   73 (441)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            44778888777765544321              2467899999999999999999987653

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.12  E-value=0.042  Score=45.37  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             HHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          142 TLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....++.+|..  -+-|-+.|..|+||||||+.+.....
T Consensus        53 ~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~   89 (327)
T TIGR01650        53 TTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLN   89 (327)
T ss_pred             HHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHC
Confidence            44556666653  34599999999999999999988654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.12  E-value=0.0047  Score=48.49  Aligned_cols=25  Identities=28%  Similarity=0.537  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (237)
T PRK11614         30 QGEIVTLIGANGAGKTTLLGTLCGD   54 (237)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999864

>PRK08116 hypothetical protein; Validated

Probab=96.12  E-value=0.0074  Score=48.54  Aligned_cols=37  Identities=24%  Similarity=0.198  Sum_probs=28.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      .-+-++|..|+|||.||..|++....+  --.+++++++
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~  151 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFP  151 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHH
Confidence            358899999999999999999986533  2346777654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.12  E-value=0.0048  Score=49.49  Aligned_cols=26  Identities=31%  Similarity=0.592  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~   74 (264)
T PRK13546         49 EGDVIGLVGINGSGKSTLSNIIGGSL   74 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45689999999999999999999753

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=96.11  E-value=0.0049  Score=50.38  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+..-
T Consensus        29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl   53 (303)
T TIGR01288        29 RGECFGLLGPNGAGKSTIARMLLGM   53 (303)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.11  E-value=0.0048  Score=49.17  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   61 (258)
T PRK14268         37 KNSVTALIGPSGCGKSTFIRCLNRM   61 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999853

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.11  E-value=0.005  Score=49.61  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (274)
T PRK13647         30 EGSKTALLGPNGAGKSTLLLHLNGI   54 (274)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4579999999999999999999864

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=96.11  E-value=0.0085  Score=44.76  Aligned_cols=43  Identities=14%  Similarity=0.225  Sum_probs=28.7

Q ss_pred             cchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          137 ESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +|....+.++++.+..  ....-|-|+|-.|+||+.+|+.|++..
T Consensus         2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s   46 (168)
T PF00158_consen    2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS   46 (168)
T ss_dssp             S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred             EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence            4555556666665432  223455599999999999999999953

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.10  E-value=0.0052  Score=48.64  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (249)
T PRK14253         28 ARQVTALIGPSGCGKSTLLRCLNRM   52 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3469999999999999999999864

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.10  E-value=0.011  Score=50.84  Aligned_cols=28  Identities=29%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .+.+|.++|..|+||||++.++......
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~  121 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKK  121 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            4789999999999999999999876653

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=96.10  E-value=0.005  Score=48.85  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        21 ~Gei~~l~G~nGsGKSTLl~~l~Gl   45 (248)
T PRK03695         21 AGEILHLVGPNGAGKSTLLARMAGL   45 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4569999999999999999998853

>PF13245 AAA_19: Part of AAA domain

Probab=96.10  E-value=0.01  Score=38.18  Aligned_cols=26  Identities=31%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             CccEEEEEcCCCCcHH-HHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKT-MLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKT-TLa~~v~~~~  179 (204)
                      +-++..|.|.+|.||| |+++.+.+-.
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567888999999999 6666665554

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.10  E-value=0.021  Score=51.30  Aligned_cols=46  Identities=13%  Similarity=0.192  Sum_probs=38.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+...+.|.+++..+.+ ..+-++|..|+||||+|+.+-...
T Consensus        17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l   63 (614)
T PRK14971         17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI   63 (614)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999987765 457899999999999998877653

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.10  E-value=0.005  Score=49.61  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+...
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl   51 (275)
T PRK13639         27 KGEMVALLGPNGAGKSTLFLHFNGI   51 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999999999999864

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=96.10  E-value=0.0051  Score=50.44  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+.--
T Consensus        32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl   56 (305)
T PRK13651         32 QGEFIAIIGQTGSGKTTFIEHLNAL   56 (305)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999964

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.09  E-value=0.0051  Score=49.87  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~   57 (286)
T PRK13646         32 QGKYYAIVGQTGSGKSTLIQNINALL   57 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999999753

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=96.09  E-value=0.0047  Score=49.45  Aligned_cols=26  Identities=19%  Similarity=0.397  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||.+.+....
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   57 (265)
T PRK10253         32 DGHFTAIIGPNGCGKSTLLRTLSRLM   57 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            34699999999999999999998753

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.09  E-value=0.0054  Score=48.59  Aligned_cols=25  Identities=16%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (250)
T PRK14266         28 KNSVTALIGPSGCGKSTFIRTLNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4568999999999999999999853

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=96.09  E-value=0.0052  Score=50.89  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~   65 (327)
T PRK11308         40 RGKTLAVVGESGCGKSTLARLLTMIE   65 (327)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            45689999999999999999999753

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.09  E-value=0.0047  Score=52.91  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++|.++|++|+||||++.++-...
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~  245 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARY  245 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4699999999999999888876544

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.08  E-value=0.0056  Score=47.06  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl   57 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRF   57 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.08  E-value=0.0052  Score=49.56  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl   53 (277)
T PRK13652         29 RNSRIAVIGPNGAGKSTLFRHFNGI   53 (277)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999965

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.08  E-value=0.012  Score=46.30  Aligned_cols=39  Identities=21%  Similarity=0.079  Sum_probs=25.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      -.++.|.|..|.|||||+.++......+ . ..+++++...
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g-~~~~yi~~e~   62 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFLQN-G-YSVSYVSTQL   62 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEeCCC
Confidence            4599999999999999975554433211 1 3356666443

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.08  E-value=0.012  Score=49.03  Aligned_cols=49  Identities=18%  Similarity=0.049  Sum_probs=37.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhcc---C-CCCceEEEEEcCCCCChHhhh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKG---N-NLFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~---~-~~F~~~~wv~vs~~~~~~~iq  203 (204)
                      -+++=|+|..|+|||+|+-+++=+...   . ..-..++||.--.+|+++.|.
T Consensus       126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~  178 (344)
T PLN03187        126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV  178 (344)
T ss_pred             CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH
Confidence            468889999999999999988643221   1 112468999999999988765

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.08  E-value=0.0054  Score=48.61  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+.--
T Consensus        30 ~Ge~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244         30 KREVTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3568999999999999999999854

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.08  E-value=0.0053  Score=49.80  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||++.+.-
T Consensus        64 ~Ge~~~l~G~nGsGKSTLl~~L~G   87 (286)
T PRK14275         64 SKYVTAIIGPSGCGKSTFLRAINR   87 (286)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            446899999999999999999986

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=96.08  E-value=0.0055  Score=47.65  Aligned_cols=25  Identities=32%  Similarity=0.593  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (223)
T TIGR03740        25 KNSVYGLLGPNGAGKSTLLKMITGI   49 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.08  E-value=0.0054  Score=49.78  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||.+.+....
T Consensus        32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl~   57 (287)
T PRK13641         32 EGSFVALVGHTGSGKSTLMQHFNALL   57 (287)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999999653

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.07  E-value=0.0054  Score=48.66  Aligned_cols=26  Identities=31%  Similarity=0.528  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+....
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34689999999999999999999753

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.07  E-value=0.006  Score=44.76  Aligned_cols=25  Identities=28%  Similarity=0.539  Sum_probs=22.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.+++|+|..|.|||||++.+....
T Consensus        25 g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          25 GEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4799999999999999999998753

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=96.07  E-value=0.0056  Score=48.15  Aligned_cols=25  Identities=28%  Similarity=0.545  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (237)
T TIGR00968        25 TGSLVALLGPSGSGKSTLLRIIAGL   49 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4569999999999999999999964

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.07  E-value=0.007  Score=45.73  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=23.7

Q ss_pred             CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          152 NHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+...-|+|+|..|+|||||.+.+.+.
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            346677999999999999999999975

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.06  E-value=0.01  Score=48.96  Aligned_cols=50  Identities=16%  Similarity=0.097  Sum_probs=37.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~iq  203 (204)
                      .-.++-|+|..|+|||||+.++.-.....    ..-..++|+.-...|+.+.|.
T Consensus        95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~  148 (316)
T TIGR02239        95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL  148 (316)
T ss_pred             CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH
Confidence            36799999999999999999987642211    112467999988888876553

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=96.06  E-value=0.0054  Score=49.10  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T TIGR02769        36 EGETVGLLGRSGCGKSTLARLLLGL   60 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999875

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK09183 transposase/IS protein; Provisional

Probab=96.06  E-value=0.0054  Score=49.09  Aligned_cols=25  Identities=32%  Similarity=0.372  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+.|+|..|+|||+||..+.+..
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            3457799999999999999997653

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=96.06  E-value=0.0055  Score=49.14  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl   62 (267)
T PRK15112         38 EGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.05  E-value=0.0056  Score=45.67  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ---|+|.|+.|+||+||.+.|++=
T Consensus        29 Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhc
Confidence            346999999999999999999974

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=96.05  E-value=0.0056  Score=49.24  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.--
T Consensus        50 ~Ge~~~I~G~nGsGKSTLl~~laGl   74 (272)
T PRK14236         50 KNRVTAFIGPSGCGKSTLLRCFNRM   74 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4579999999999999999999754

>PRK06851 hypothetical protein; Provisional

Probab=96.05  E-value=0.014  Score=48.87  Aligned_cols=46  Identities=15%  Similarity=0.168  Sum_probs=35.8

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI  199 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  199 (204)
                      +.-+++-|.|.+|+|||||++.+.+....+ .|+...+.|-+.+-++
T Consensus        28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~-g~~Ve~~~~~~d~~sl   73 (367)
T PRK06851         28 GANRIFILKGGPGTGKSTLMKKIGEEFLEK-GYDVEFLHCSSDNDSL   73 (367)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEcCCCCCce
Confidence            456899999999999999999999987543 4777677776655443

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.05  E-value=0.013  Score=43.05  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCce--EEEEE
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEK--VISAQ  192 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~--~~wv~  192 (204)
                      .--|+.+.|+.|+||+||.-.+--.....  |+|  .+|+.
T Consensus        27 ~GeivtlMGPSGcGKSTLls~~~G~La~~--F~~~G~~~l~   65 (213)
T COG4136          27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQ--FSCTGELWLN   65 (213)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhhcccC--cceeeEEEEC
Confidence            45689999999999999999998887755  776  67874

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.04  E-value=0.0057  Score=49.29  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||.+.+..-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (274)
T PRK13644         27 KGEYIGIIGKNGSGKSTLALHLNGLL   52 (274)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45699999999999999999999753

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.04  E-value=0.0058  Score=49.33  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        46 ~Ge~~~I~G~nGsGKSTLl~~l~Gl   70 (276)
T PRK14271         46 ARAVTSLMGPTGSGKTTFLRTLNRM   70 (276)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.04  E-value=0.0057  Score=48.16  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+...
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~G~   51 (242)
T TIGR03411        27 PGELRVIIGPNGAGKTTMMDVITGK   51 (242)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999964

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=96.03  E-value=0.0057  Score=48.86  Aligned_cols=26  Identities=27%  Similarity=0.548  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         29 HGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            34689999999999999999998643

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.03  E-value=0.015  Score=46.95  Aligned_cols=48  Identities=17%  Similarity=0.184  Sum_probs=39.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~iq  203 (204)
                      .-+++=|+|+.|+||||||-+++=...-.  -..++||.--..|++..+.
T Consensus        59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~  106 (279)
T COG0468          59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK  106 (279)
T ss_pred             cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH
Confidence            35789999999999999999988765532  4479999999999988765

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=96.03  E-value=0.0053  Score=50.90  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~   66 (330)
T PRK09473         41 AGETLGIVGESGSGKSQTAFALMGLL   66 (330)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            45689999999999999999999643

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.02  E-value=0.0054  Score=51.01  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      -..+++.|+.|+|||||.+.|--
T Consensus        31 Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          31 GEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999963

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=96.02  E-value=0.0059  Score=49.51  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+....
T Consensus        62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~   87 (282)
T cd03291          62 KGEMLAITGSTGSGKTSLLMLILGEL   87 (282)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.01  E-value=0.0061  Score=48.32  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+.-.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~   53 (252)
T PRK14272         29 RGTVNALIGPSGCGKTTFLRAINRM   53 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.01  E-value=0.011  Score=49.21  Aligned_cols=50  Identities=16%  Similarity=0.100  Sum_probs=38.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~iq  203 (204)
                      .-.++-|+|.+|+|||+|+..++-.....    ..-..++||.--.+|+++.|.
T Consensus       122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~  175 (342)
T PLN03186        122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI  175 (342)
T ss_pred             CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH
Confidence            35788899999999999999888543211    112369999999999988765

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.00  E-value=0.006  Score=50.35  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~   76 (320)
T PRK13631         51 KNKIYFIIGNSGSGKSTLVTHFNGLI   76 (320)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999753

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=96.00  E-value=0.0058  Score=51.09  Aligned_cols=25  Identities=28%  Similarity=0.630  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~iaGl   47 (352)
T PRK11144         23 AQGITAIFGRSGAGKTSLINAISGL   47 (352)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.00  E-value=0.0061  Score=48.68  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~   57 (261)
T PRK14258         32 QSKVTAIIGPSGCGKSTFLKCLNRMN   57 (261)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccc
Confidence            45799999999999999999999753

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.00  E-value=0.006  Score=49.50  Aligned_cols=25  Identities=28%  Similarity=0.607  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+..-
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl   56 (287)
T PRK13637         32 DGEFVGLIGHTGSGKSTLIQHLNGL   56 (287)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568999999999999999999964

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.99  E-value=0.0061  Score=48.93  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.-.
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   61 (268)
T PRK10419         37 SGETVALLGRSGCGKSTLARLLVGL   61 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=95.97  E-value=0.0065  Score=46.54  Aligned_cols=25  Identities=28%  Similarity=0.474  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999999999999875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.97  E-value=0.0062  Score=49.45  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl   55 (288)
T PRK13643         31 KGSYTALIGHTGSGKSTLLQHLNGL   55 (288)
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            4568999999999999999999965

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=95.97  E-value=0.0062  Score=50.96  Aligned_cols=24  Identities=33%  Similarity=0.650  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|+|..|+|||||++.+..-
T Consensus        23 Gei~~l~G~nGsGKSTLl~~iaGl   46 (354)
T TIGR02142        23 QGVTAIFGRSGSGKTTLIRLIAGL   46 (354)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999865

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.97  E-value=0.0063  Score=47.02  Aligned_cols=27  Identities=26%  Similarity=0.532  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-.|.+|+|+.|.|||||.+.+.-...
T Consensus        26 pGev~ailGPNGAGKSTlLk~LsGel~   52 (259)
T COG4559          26 PGEVLAILGPNGAGKSTLLKALSGELS   52 (259)
T ss_pred             CCcEEEEECCCCccHHHHHHHhhCccC
Confidence            346999999999999999999987543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=95.96  E-value=0.0071  Score=45.30  Aligned_cols=27  Identities=19%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ++...|.|+|..|+|||||...+....
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~   42 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRK   42 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            456688999999999999999998763

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.95  E-value=0.012  Score=44.72  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=24.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      -..+-++|..|.|||||.|.+|..++..
T Consensus        28 Gef~fl~GpSGAGKSTllkLi~~~e~pt   55 (223)
T COG2884          28 GEFVFLTGPSGAGKSTLLKLIYGEERPT   55 (223)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence            4568899999999999999999887643

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=95.95  E-value=0.016  Score=49.39  Aligned_cols=47  Identities=21%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             ccccchHHHHHHHHHhhcCC--------------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNH--------------NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~--------------~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+..++.++              ..+-|-++|+.|+||||||+.+-....
T Consensus        15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~   75 (443)
T PRK05201         15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (443)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789888888877766320              146789999999999999999988654

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.95  E-value=0.02  Score=45.43  Aligned_cols=51  Identities=18%  Similarity=0.159  Sum_probs=34.9

Q ss_pred             HHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          142 TLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       142 ~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      .+..+.++..+  .....+-++|.+|+|||+||..+.+....+  -..+++++++
T Consensus        84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~~  136 (244)
T PRK07952         84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITVA  136 (244)
T ss_pred             HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEHH
Confidence            44455555433  234578899999999999999999986533  2345666654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=95.94  E-value=0.0065  Score=50.38  Aligned_cols=26  Identities=27%  Similarity=0.528  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.|..-.
T Consensus        46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~   71 (331)
T PRK15079         46 EGETLGVVGESGCGKSTFARAIIGLV   71 (331)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            45689999999999999999998643

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.94  E-value=0.0068  Score=48.52  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        41 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   65 (265)
T PRK14252         41 EKQVTALIGPSGCGKSTFLRCFNRM   65 (265)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4579999999999999999999854

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=95.94  E-value=0.012  Score=45.94  Aligned_cols=41  Identities=27%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHH-HHhcc-CCCCceEEEEEcCCCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVA-GQAKG-NNLFEKVISAQVSQTP  197 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~-~~~~~-~~~F~~~~wv~vs~~~  197 (204)
                      .-+++.|.|.+|+|||+|+.++. +..+. .   +.++||+...++
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g---e~vlyvs~ee~~   60 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFG---EKVLYVSFEEPP   60 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESSS-H
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC---CcEEEEEecCCH
Confidence            45799999999999999988754 54342 2   347888886655

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.94  E-value=0.012  Score=45.77  Aligned_cols=39  Identities=28%  Similarity=0.502  Sum_probs=27.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEE
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQ  192 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~  192 (204)
                      ....+-|+|..|+|||.|.+.+++.......=..+++++
T Consensus        33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~   71 (219)
T PF00308_consen   33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS   71 (219)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence            356789999999999999999999754321212355655

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.94  E-value=0.0066  Score=45.57  Aligned_cols=24  Identities=38%  Similarity=0.674  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.|.+|||-.|+|||||.+.+-..
T Consensus        32 GeVLgiVGESGSGKtTLL~~is~r   55 (258)
T COG4107          32 GEVLGIVGESGSGKTTLLKCISGR   55 (258)
T ss_pred             CcEEEEEecCCCcHHhHHHHHhcc
Confidence            469999999999999999988765

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=95.93  E-value=0.013  Score=45.91  Aligned_cols=45  Identities=18%  Similarity=0.171  Sum_probs=38.1

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+++|.++.++.+--.-.+++..-+-|.||+|+||||-+..+-+.
T Consensus        27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~   71 (333)
T KOG0991|consen   27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE   71 (333)
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHH
Confidence            568999999988888888889999999999999999966665543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=95.93  E-value=0.021  Score=52.33  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             cccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          135 HFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++|.+..++.|.+.+..         ....++-++|+.|+|||+||+.+....
T Consensus       455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l  508 (731)
T TIGR02639       455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL  508 (731)
T ss_pred             ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence            456777777777776641         124578899999999999999999865

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=95.93  E-value=0.02  Score=51.36  Aligned_cols=55  Identities=20%  Similarity=0.289  Sum_probs=38.6

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEE
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISA  191 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv  191 (204)
                      ..++|.+...+.+...+.... . +-++|+.|+|||||++.+.+..... .|...+++
T Consensus        18 ~~viG~~~a~~~l~~a~~~~~-~-~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~   72 (608)
T TIGR00764        18 DQVIGQEEAVEIIKKAAKQKR-N-VLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVY   72 (608)
T ss_pred             hhccCHHHHHHHHHHHHHcCC-C-EEEECCCCCCHHHHHHHHHHHcCch-hheeEEEE
Confidence            456788887777777666543 4 4499999999999999999865422 34444433

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.93  E-value=0.012  Score=44.05  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=26.6

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+++.+.. ..-.-|.|.|+.|+|||||.+.+.+.
T Consensus         3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~   37 (175)
T PF00025_consen    3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNG   37 (175)
T ss_dssp             HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred             HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhc
Confidence            34555544 55667899999999999999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.93  E-value=0.011  Score=54.26  Aligned_cols=47  Identities=28%  Similarity=0.289  Sum_probs=36.1

Q ss_pred             ccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..++.|.+++.-             ...+-|-++|..|+||||||+.+.+...
T Consensus       178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~  237 (733)
T TIGR01243       178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG  237 (733)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence            3467888888887776521             1245688999999999999999998654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=95.93  E-value=0.0059  Score=55.51  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +.-..|+|+|..|+|||||+|.+-.
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~g  521 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLG  521 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999999875

>PTZ00035 Rad51 protein; Provisional

Probab=95.93  E-value=0.019  Score=47.75  Aligned_cols=50  Identities=18%  Similarity=0.117  Sum_probs=36.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc---CC-CCceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG---NN-LFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~iq  203 (204)
                      .-.++-|+|..|+|||||+.++.-....   .. .=..++||.-..+|+.+.|.
T Consensus       117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~  170 (337)
T PTZ00035        117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV  170 (337)
T ss_pred             CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH
Confidence            3578999999999999999998754331   00 11347799988888877653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.93  E-value=0.0067  Score=48.08  Aligned_cols=25  Identities=20%  Similarity=0.428  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14249         29 ERQITAIIGPSGCGKSTLLRALNRM   53 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.92  E-value=0.0063  Score=53.55  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..-..++|+|..|+|||||++.+..-
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~  384 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGL  384 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999854

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.91  E-value=0.007  Score=48.02  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-..+.++|..|+||||+.+.|+.-
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINrL   50 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINRL   50 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhcc
Confidence            3457889999999999999999864

>PRK09354 recA recombinase A; Provisional

Probab=95.91  E-value=0.013  Score=48.70  Aligned_cols=45  Identities=16%  Similarity=0.120  Sum_probs=35.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK  201 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  201 (204)
                      -+++-|+|..|+|||||+-++.-.....  =..++||..-.+++...
T Consensus        60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~~  104 (349)
T PRK09354         60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPVY  104 (349)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHHH
Confidence            5688999999999999999988665422  35688998887777543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=95.91  E-value=0.0074  Score=46.26  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-.+++|+|..|.|||||++.+..-..
T Consensus        30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          30 KGELVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            457899999999999999999987543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=95.91  E-value=0.014  Score=50.46  Aligned_cols=46  Identities=17%  Similarity=0.186  Sum_probs=39.0

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..+..|.+++..+.+ ..+-++|..|+||||+|+.+-+..
T Consensus        17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l   63 (451)
T PRK06305         17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL   63 (451)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4678999999999999987665 567899999999999999887653

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.90  E-value=0.0071  Score=48.98  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+..-
T Consensus        31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl   55 (283)
T PRK13636         31 KGEVTAILGGNGAGKSTLFQNLNGI   55 (283)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4569999999999999999999965

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=95.90  E-value=0.0084  Score=50.21  Aligned_cols=29  Identities=21%  Similarity=0.258  Sum_probs=25.6

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ..+..++|||+.|.|||.+|+.|++....
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~  174 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGI  174 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence            35789999999999999999999998654

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.90  E-value=0.0068  Score=49.14  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        64 ~Ge~~~I~G~nGsGKSTLl~~l~Gl   88 (285)
T PRK14254         64 ENQVTAMIGPSGCGKSTFLRCINRM   88 (285)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999854

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=95.90  E-value=0.0071  Score=49.57  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+..-
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl   56 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGL   56 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999964

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=95.89  E-value=0.0073  Score=46.90  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+...
T Consensus        30 ~G~~~~I~G~nGsGKStLl~~l~G~   54 (220)
T TIGR02982        30 PGEIVILTGPSGSGKTTLLTLIGGL   54 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3479999999999999999999854

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=95.89  E-value=0.007  Score=50.97  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+.--
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl   52 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGL   52 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3468999999999999999999864

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.89  E-value=0.0073  Score=48.81  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.+....
T Consensus        32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~   57 (279)
T PRK13635         32 EGEWVAIVGHNGSGKSTLAKLLNGLL   57 (279)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45689999999999999999999653

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.89  E-value=0.013  Score=54.11  Aligned_cols=47  Identities=17%  Similarity=0.159  Sum_probs=39.7

Q ss_pred             ccccchHHHHHHHHHhhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFN-MIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.|.+++..+.+. .+-++|..|+||||+|+.+-+...
T Consensus        15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999876654 578999999999999999977654

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=95.88  E-value=0.0078  Score=52.64  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=24.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+|.|.+|+||||+++.+.+...
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~  309 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLG  309 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            457999999999999999999998764

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.88  E-value=0.011  Score=36.47  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +..|.|..|+|||||.-.+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999977654

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=95.88  E-value=0.014  Score=43.92  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.-|.++|.+|+|||||+..+...
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~   40 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLG   40 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcC
Confidence            3345889999999999999999653

>PRK06526 transposase; Provisional

Probab=95.88  E-value=0.0076  Score=48.11  Aligned_cols=25  Identities=28%  Similarity=0.239  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-+-++|.+|+|||+||..+.+..
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHH
Confidence            4458999999999999999998764

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.88  E-value=0.0072  Score=49.10  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+.--
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (290)
T PRK13634         32 SGSYVAIIGHTGSGKSTLLQHLNGL   56 (290)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4469999999999999999999964

>cd01854 YjeQ_engC YjeQ/EngC

Probab=95.87  E-value=0.011  Score=48.00  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +.|..+|.+   ++++++|..|+|||||++.+....
T Consensus       153 ~~L~~~L~~---k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         153 DELREYLKG---KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             HHHHhhhcc---ceEEEECCCCCCHHHHHHHHhchh
Confidence            455555543   789999999999999999988653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.86  E-value=0.015  Score=48.92  Aligned_cols=38  Identities=26%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQV  193 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v  193 (204)
                      ..++|.++|+.|+||||++..+......++  ..+.+|+.
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lIta  242 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITT  242 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC
Confidence            467999999999999999999887653221  23445544

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=95.84  E-value=0.017  Score=44.58  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +..|+|++|.||||++..+-...
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            78899999999997666666554

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=95.84  E-value=0.012  Score=44.03  Aligned_cols=31  Identities=16%  Similarity=0.270  Sum_probs=26.0

Q ss_pred             CCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          152 NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      .++..||=..|..|+||||+|..++.....+
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~   50 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAK   50 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence            3466799999999999999999999876543

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=95.84  E-value=0.0079  Score=48.58  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=23.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||++.++.-.
T Consensus        29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~   54 (275)
T cd03289          29 PGQRVGLLGRTGSGKSTLLSAFLRLL   54 (275)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhhc
Confidence            45689999999999999999999764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.84  E-value=0.0079  Score=45.86  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|.|..|.|||||.+.+..-.
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999998643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=95.84  E-value=0.014  Score=46.23  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=26.8

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ++++.+.|.+   +.+.++|+.|+|||||...+..+.
T Consensus       111 i~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       111 LKELIEALQN---RISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             HHHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhh
Confidence            4555555543   588999999999999999999764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=95.83  E-value=0.0075  Score=49.15  Aligned_cols=26  Identities=42%  Similarity=0.606  Sum_probs=22.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.++++.|..|+|||||.+.+..-.+
T Consensus        31 Gei~gllG~NGAGKTTllk~l~gl~~   56 (293)
T COG1131          31 GEIFGLLGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCcC
Confidence            46999999999999999999997543

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.83  E-value=0.017  Score=47.11  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=24.3

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+-+|.|.|..|+||||+|+.+.+...
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~  117 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLG  117 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3566899999999999999999998753

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=95.83  E-value=0.0074  Score=40.92  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             EEEEEc-CCCCcHHHHHHHHHHHhc
Q 046665          157 MIGVYG-MGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       157 vI~IvG-~gGiGKTTLa~~v~~~~~  180 (204)
                      +|++.| .||+||||++..+..-..
T Consensus         1 ~i~~~~~kgG~Gkst~~~~la~~~~   25 (104)
T cd02042           1 VIAVANQKGGVGKTTTAVNLAAALA   25 (104)
T ss_pred             CEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            477887 789999999998876543

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.83  E-value=0.026  Score=52.70  Aligned_cols=46  Identities=17%  Similarity=0.260  Sum_probs=35.6

Q ss_pred             ccccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.+...+..         ....++.++|+.|+||||||+.+.+..
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l  622 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM  622 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3467888887777776641         123588999999999999999999764

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.82  E-value=0.0081  Score=47.17  Aligned_cols=26  Identities=23%  Similarity=0.454  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+.+|+|..|+|||||.+.|---.
T Consensus        33 ~Gei~~iiGgSGsGKStlLr~I~Gll   58 (263)
T COG1127          33 RGEILAILGGSGSGKSTLLRLILGLL   58 (263)
T ss_pred             CCcEEEEECCCCcCHHHHHHHHhccC
Confidence            45789999999999999999998543

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.82  E-value=0.0069  Score=47.24  Aligned_cols=24  Identities=42%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...+-|+|.+|+||||+|+.+-+.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~~   35 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPGK   35 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCCC
Confidence            456899999999999999988653

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.82  E-value=0.008  Score=49.23  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        70 ~Ge~~~IvG~nGsGKSTLl~~L~Gl   94 (305)
T PRK14264         70 EKSVTALIGPSGCGKSTFLRCLNRM   94 (305)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4569999999999999999999854

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=95.82  E-value=0.0098  Score=45.71  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -+++-|+|.+|+|||+|+.++..+
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~   35 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVN   35 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999988754

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=95.81  E-value=0.016  Score=48.77  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             CccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          133 FIHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...++|.+.....|.+.+..+.+ .-+-++|+.|+||||||..+-..
T Consensus        18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~   64 (365)
T PRK07471         18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARF   64 (365)
T ss_pred             hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999887664 46899999999999999766554

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=95.81  E-value=0.0081  Score=49.09  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+...
T Consensus        27 ~Gei~~l~G~NGaGKTTLl~~l~Gl   51 (301)
T TIGR03522        27 KGRIVGFLGPNGAGKSTTMKIITGY   51 (301)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd04154 Arl2 Arl2 subfamily

Probab=95.81  E-value=0.0076  Score=44.72  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..|.++|.+|+|||||+..+...
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~   37 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGE   37 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccC
Confidence            45679999999999999988754

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=95.81  E-value=0.0071  Score=53.00  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl  311 (506)
T PRK13549        287 RGEILGIAGLVGAGRTELVQCLFGA  311 (506)
T ss_pred             CCcEEEEeCCCCCCHHHHHHHHhCC
Confidence            4468999999999999999999964

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=95.81  E-value=0.019  Score=45.86  Aligned_cols=50  Identities=24%  Similarity=0.230  Sum_probs=37.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccC---C-CCceEEEEEcCCCCChHhhhC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN---N-LFEKVISAQVSQTPQIKKIQE  204 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~iq~  204 (204)
                      -.|.=|+|.+|+|||.|+-++.=+....   . .=..++|+.-..+|+.+.+++
T Consensus        38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~   91 (256)
T PF08423_consen   38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ   91 (256)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred             CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence            4689999999999999999887553321   1 123599999999999888753

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.81  E-value=0.0065  Score=47.54  Aligned_cols=19  Identities=26%  Similarity=0.513  Sum_probs=17.2

Q ss_pred             CccEEEEEcCCCCcHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLV  172 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa  172 (204)
                      .-.+++|+|..|+|||||+
T Consensus        20 ~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270          20 RNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             CCcEEEEEcCCCCCHHHHH
Confidence            4569999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=95.80  E-value=0.0072  Score=51.66  Aligned_cols=23  Identities=52%  Similarity=0.790  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      --||+|+|..|+||||+++.+--
T Consensus       367 gEvigilGpNgiGKTTFvk~LAG  389 (591)
T COG1245         367 GEVIGILGPNGIGKTTFVKLLAG  389 (591)
T ss_pred             ceEEEEECCCCcchHHHHHHHhc
Confidence            56999999999999999999984

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=95.79  E-value=0.031  Score=46.96  Aligned_cols=41  Identities=20%  Similarity=0.330  Sum_probs=33.4

Q ss_pred             HHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          142 TLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      ..+.+++.+.......+-|.|.||.|||+|.+.+.+..+..
T Consensus         9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~   49 (364)
T PF05970_consen    9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR   49 (364)
T ss_pred             HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence            34556666666777889999999999999999999987653

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=95.79  E-value=0.0083  Score=45.96  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      -+++.|.|..|.|||||.+.+.
T Consensus        28 ~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          28 KRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEEEEECCCCCChHHHHHHHH
Confidence            3699999999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd01855 YqeH YqeH

Probab=95.79  E-value=0.021  Score=43.24  Aligned_cols=40  Identities=15%  Similarity=0.183  Sum_probs=31.2

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      |.+..++.|.+.+.  ....+.++|..|+|||||...+.+..
T Consensus       112 gi~eL~~~l~~~l~--~~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         112 GVEELINAIKKLAK--KGGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CHHHHHHHHHHHhh--cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            56666666666653  34578999999999999999999854

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=95.79  E-value=0.0077  Score=53.09  Aligned_cols=26  Identities=15%  Similarity=0.213  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        34 ~Ge~~~iiG~nGsGKSTLl~~i~G~~   59 (529)
T PRK15134         34 AGETLALVGESGSGKSVTALSILRLL   59 (529)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            45689999999999999999998653

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.79  E-value=0.019  Score=47.69  Aligned_cols=47  Identities=30%  Similarity=0.376  Sum_probs=37.1

Q ss_pred             ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+-|.+.++++|.+...    +         +.++=|-++|++|.|||-||+.|-|.-.
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~  210 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD  210 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            456788888888777642    2         2577889999999999999999998643

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=95.79  E-value=0.0075  Score=52.80  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        29 ~Ge~~~l~G~NGsGKSTLl~~l~G~   53 (501)
T PRK10762         29 PGRVMALVGENGAGKSTMMKVLTGI   53 (501)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4579999999999999999999864

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.79  E-value=0.021  Score=47.62  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .....|.|.|..|+||||+++.+.+..
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i  146 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYI  146 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            346889999999999999999988753

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.78  E-value=0.0088  Score=47.83  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+.--
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (261)
T PRK14263         33 KNEITGFIGPSGCGKSTVLRSLNRM   57 (261)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcc
Confidence            4569999999999999999999643

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=95.78  E-value=0.009  Score=46.80  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|.|||||.+.+....
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~   50 (232)
T cd03300          25 EGEFFTLLGPSGCGKTTLLRLIAGFE   50 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45699999999999999999999764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=95.78  E-value=0.0085  Score=49.89  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++++|..|.|||||.+.+..-
T Consensus        66 ~Gei~gLlGpNGaGKSTLl~~L~Gl   90 (340)
T PRK13536         66 SGECFGLLGPNGAGKSTIARMILGM   90 (340)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4579999999999999999999864

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=95.78  E-value=0.008  Score=52.86  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        25 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   49 (520)
T TIGR03269        25 EGEVLGILGRSGAGKSVLMHVLRGM   49 (520)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            3468999999999999999999875

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=95.78  E-value=0.0085  Score=48.42  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||.+.+...
T Consensus        35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   59 (280)
T PRK13633         35 KGEFLVILGRNGSGKSTIAKHMNAL   59 (280)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4468999999999999999999865

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=95.77  E-value=0.0076  Score=52.69  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        26 ~Ge~~~liG~nGsGKSTLl~~i~G~   50 (500)
T TIGR02633        26 PGECVGLCGENGAGKSTLMKILSGV   50 (500)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999999999999864

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=95.77  E-value=0.0079  Score=52.47  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+...
T Consensus        28 ~Ge~~~liG~nGsGKSTLl~~l~G~   52 (490)
T PRK10938         28 AGDSWAFVGANGSGKSALARALAGE   52 (490)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=95.77  E-value=0.0079  Score=53.04  Aligned_cols=25  Identities=32%  Similarity=0.543  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+...
T Consensus        26 ~Ge~~~liG~NGsGKSTLl~~l~Gl   50 (530)
T PRK15064         26 GGNRYGLIGANGCGKSTFMKILGGD   50 (530)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.76  E-value=0.0088  Score=48.24  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|.|||||++.+...
T Consensus        32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl   56 (277)
T PRK13642         32 KGEWVSIIGQNGSGKSTTARLIDGL   56 (277)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568999999999999999999864

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=95.75  E-value=0.023  Score=43.70  Aligned_cols=42  Identities=17%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .+++|.+..+.-+.-....  ..=+-++|..|+|||+||+.+-.
T Consensus         3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~   44 (206)
T PF01078_consen    3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS   44 (206)
T ss_dssp             CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred             hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            4577887776665554443  46788999999999999999885

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.75  E-value=0.019  Score=50.09  Aligned_cols=46  Identities=13%  Similarity=0.139  Sum_probs=38.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNF-NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+.....|.+++..+.+ +.+-++|..|+||||+|+.+....
T Consensus        16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L   62 (486)
T PRK14953         16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL   62 (486)
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999987654 456789999999999999987653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=95.74  E-value=0.0083  Score=52.66  Aligned_cols=25  Identities=32%  Similarity=0.446  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        36 ~Ge~~~liG~NGsGKSTLl~~l~Gl   60 (510)
T PRK15439         36 AGEVHALLGGNGAGKSTLMKIIAGI   60 (510)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.74  E-value=0.012  Score=50.06  Aligned_cols=40  Identities=30%  Similarity=0.443  Sum_probs=29.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      ...+-|+|..|+|||+|++.+++....+..=-.+++++.+
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~  175 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE  175 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence            4678999999999999999999976533111235666643

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=95.74  E-value=0.0089  Score=50.04  Aligned_cols=26  Identities=35%  Similarity=0.558  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||.+.|..-.
T Consensus        27 ~Ge~~~llGpsGsGKSTLLr~IaGl~   52 (353)
T PRK10851         27 SGQMVALLGPSGSGKTTLLRIIAGLE   52 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34689999999999999999999753

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=95.74  E-value=0.0082  Score=51.08  Aligned_cols=25  Identities=20%  Similarity=0.401  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        53 ~Gei~~LvG~NGsGKSTLLr~I~Gl   77 (400)
T PRK10070         53 EGEIFVIMGLSGSGKSTMVRLLNRL   77 (400)
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcC
Confidence            3568999999999999999999964

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=95.73  E-value=0.013  Score=50.58  Aligned_cols=50  Identities=24%  Similarity=0.341  Sum_probs=33.4

Q ss_pred             HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCc-eEEEEEcC
Q 046665          144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFE-KVISAQVS  194 (204)
Q Consensus       144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~-~~~wv~vs  194 (204)
                      ....++..+ +...-+-|+|..|+|||+|++.+.+..... +.+ .++|++.+
T Consensus       118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~~  169 (440)
T PRK14088        118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSE  169 (440)
T ss_pred             HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEHH
Confidence            334444433 235569999999999999999999976532 223 35666643

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=95.73  E-value=0.017  Score=49.25  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=34.4

Q ss_pred             ccccchHHHHHHHHHhhc-------CC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS-------NH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~-------~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+...+.       ..         .-.-|-++|..|+||||||+.+.+...
T Consensus        71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~  133 (412)
T PRK05342         71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD  133 (412)
T ss_pred             hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence            357899888777654431       10         135689999999999999999987653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.73  E-value=0.0087  Score=49.54  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +-..+.++|+.|+|||||.+.|--
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445789999999999999999974

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=95.73  E-value=0.0082  Score=54.02  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        41 ~Ge~~~lvG~nGsGKSTLl~~l~Gl   65 (623)
T PRK10261         41 RGETLAIVGESGSGKSVTALALMRL   65 (623)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            4578999999999999999999965

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=95.72  E-value=0.16  Score=44.54  Aligned_cols=27  Identities=26%  Similarity=0.431  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      --.-|++||+.|+|||||.+.+|-+..
T Consensus       415 ~~srvAlVGPNG~GKsTLlKl~~gdl~  441 (614)
T KOG0927|consen  415 LDSRVALVGPNGAGKSTLLKLITGDLQ  441 (614)
T ss_pred             cccceeEecCCCCchhhhHHHHhhccc
Confidence            346799999999999999999998754

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.72  E-value=0.017  Score=47.27  Aligned_cols=24  Identities=33%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +-|.|.|..|+|||||++.+.+..
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999998753

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=95.72  E-value=0.0084  Score=52.55  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (506)
T PRK13549         30 AGEIVSLCGENGAGKSTLMKVLSGV   54 (506)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=95.71  E-value=0.0097  Score=47.18  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .++.+|+|..|+|||||...|+-
T Consensus        22 ~~~~~i~G~NGsGKStll~ai~~   44 (247)
T cd03275          22 DRFTCIIGPNGSGKSNLMDAISF   44 (247)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999984

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-10
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-07
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 5e-13
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 37/183 (20%)

Query: 9   TKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDV-DKLKNA-RDSHIEEWLISVDEVISEVR 66
           T   +Y    I+  F     +  NF+    DV D  K+      I+  ++S D V S   
Sbjct: 11  TGEHQYQYKDILSVFED--AFVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDAV-SGTL 65

Query: 67  KLIEVEEKSNNRCF-----NGLCPN---LKTHYQL-SKKAEMEVNAIVGLHEKRKFDSVS 117
           +L                   L  N   L +  +   ++  M     +   ++   D+  
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 118 FR----TIPEEIWLKSTEGFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVK 173
           F     +  +                   L++ L  L       + + G+ G GKT +  
Sbjct: 126 FAKYNVSRLQPYL---------------KLRQALLELRPAKN--VLIDGVLGSGKTWVAL 168

Query: 174 EVA 176
           +V 
Sbjct: 169 DVC 171

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 16/182 (8%), Positives = 64/182 (35%), Gaps = 20/182 (10%)

Query: 34  EKLKNDVDKLKNARDSHIEEWLISVDEV---------ISEVRKLIEVEEKSNNRCFNGLC 84
            +L +D +  ++A      + + + D           +  +   + +  +  +     + 
Sbjct: 15  TRLIHDFE-PRDALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASELGPLID 73

Query: 85  PNLKTHYQ-LSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFI-----HF-- 136
                +   L+   E  ++  +   +  +   ++ +   + +  K   G +      +  
Sbjct: 74  FFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMTCYIR 133

Query: 137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG--NNLFEKVISAQVS 194
           E     + + L  + + +   + ++G  G GK+++  +   ++       ++ ++  + S
Sbjct: 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 193

Query: 195 QT 196
            T
Sbjct: 194 GT 195

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 10/177 (5%)

Query: 35  KLKNDVDKL--KNARDSHIEEWLISVDEVISEVRKLIEVEEKSNNRCFNGLCPNLKTH-- 90
           K    +D +          EE + +          LI++  K +N  +      L     
Sbjct: 21  KTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 80

Query: 91  ---YQLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRKSTLKEIL 147
                L       V++  G        S     + E    +    F+  +   + +++ L
Sbjct: 81  KDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKL 140

Query: 148 GSLSNHNFNMIGVYGMGGIGKTMLVKEVA--GQAKGNNLFEKVISAQVSQTPQIKKI 202
             L       + ++GM G GK++L  E               V    V +  +   +
Sbjct: 141 SKLKG-EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLL 196

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 16/161 (9%)

Query: 34  EKLKNDVDKLKNARDSHIEEWLISVDEVIS---------EVRKLIEVEEKSNNRCFNGLC 84
           E L+ D+ K     D  I   ++SV E                LI++    +N  +    
Sbjct: 14  EALEKDI-KTSYIMDHMISNGVLSVIEEEKVKSQATQYQRAAALIKMILNKDNCAYISFY 72

Query: 85  PNLKTHY--QLSKKAEMEVNAIVGLHEKRKFDSVSFRTIPEEIWLKSTEGFIHFESRK-- 140
             L       L+   +  +  +     K     ++             +  + F +RK  
Sbjct: 73  NALLHEGYKDLAALLQSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKL 132

Query: 141 -STLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK 180
              +++ L  L+      + +YGM G GK++L  E      
Sbjct: 133 VHAIQQKLWKLNGEP-GWVTIYGMAGCGKSVLAAEAVRDHS 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.65
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.51
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.43
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.32
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.24
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.43
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.39
2fna_A	357	Conserved hypothetical protein; structural genomic	98.38
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.32
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.3
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.25
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.2
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.19
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.16
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.1
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.05
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.02
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.79
3bos_A	242	Putative DNA replication factor; P-loop containing	97.73
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.7
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.66
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.61
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.6
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.59
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.59
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.58
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.57
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.57
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.56
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.55
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.52
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.5
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.49
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.48
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.47
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.46
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.46
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.44
3pvs_A	447	Replication-associated recombination protein A; ma	97.41
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.4
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.39
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.37
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.32
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.31
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.29
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.28
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.28
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.27
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.27
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.27
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.26
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.24
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.23
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.22
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.22
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.22
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.21
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.2
3fwy_A	314	Light-independent protochlorophyllide reductase I	97.19
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.17
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.17
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.16
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.14
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.14
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.12
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.11
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.11
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.1
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.09
3co5_A	143	Putative two-component system transcriptional RES	97.09
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.08
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.07
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.07
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.07
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.06
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.06
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.06
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.06
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.05
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.04
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.02
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.02
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.02
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.02
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.0
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.98
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.97
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.97
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.97
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.96
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.96
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.96
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.95
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.95
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.94
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.93
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.92
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.92
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.9
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.89
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.88
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.88
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.87
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.86
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.86
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.85
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.85
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.85
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.84
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.83
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.83
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.82
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.81
1g6h_A	257	High-affinity branched-chain amino acid transport	96.81
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.81
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.81
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.8
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.8
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.8
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.8
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.78
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.78
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.77
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.77
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.76
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.76
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.75
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.74
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.74
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.74
2og2_A	359	Putative signal recognition particle receptor; nuc	96.74
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.74
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.73
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.72
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.71
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.71
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.71
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.7
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.7
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.69
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.69
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.66
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.66
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.65
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.65
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.64
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.62
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.6
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.59
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.59
3end_A	307	Light-independent protochlorophyllide reductase ir	96.57
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.56
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.56
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.55
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.55
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.52
2xxa_A	433	Signal recognition particle protein; protein trans	96.51
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.5
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.5
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.5
2qgz_A	308	Helicase loader, putative primosome component; str	96.5
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.49
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.48
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.47
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.47
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.44
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.43
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.43
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.43
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.41
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.4
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.4
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.4
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.39
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.38
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.37
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.37
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.37
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.36
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.36
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.36
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.36
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.35
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.35
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.34
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.34
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.33
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.32
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.32
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.31
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.3
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.29
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.28
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.28
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.27
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.26
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.25
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.25
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.25
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.24
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.23
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.23
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.22
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.22
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.22
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.21
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.21
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.2
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.19
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.19
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.19
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.18
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.18
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.17
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.16
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.15
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.14
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.14
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.14
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.12
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.1
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.09
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.09
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.08
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.08
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.08
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.07
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.07
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.07
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.07
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.07
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.07
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.07
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.06
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.05
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.04
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.01
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.01
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.01
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.01
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.0
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.99
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.99
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.99
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.97
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.95
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.94
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.93
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.92
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.91
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.91
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.91
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.9
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.9
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.89
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.87
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.86
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.86
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.86
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.84
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.84
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.84
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.83
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.83
3ice_A	422	Transcription termination factor RHO; transcriptio	95.82
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.81
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.8
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.8
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.8
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.79
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.78
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.78
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.78
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.77
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.75
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.73
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.71
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.71
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.71
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.7
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.7
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.7
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.69
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.66
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.64
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.63
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.63
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.61
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.6
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	95.56
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.55
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.55
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.55
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.54
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	95.52
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.5
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.49
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.49
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.49
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.49
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.48
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.47
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.47
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.47
3io5_A	333	Recombination and repair protein; storage dimer, i	95.46
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.45
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.44
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.38
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.36
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.35
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.33
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.29
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.29
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	95.28
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.28
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.28
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.26
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.21
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.2
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.19
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.19
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.17
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.17
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.17
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.16
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	95.15
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.14
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.14
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	95.13
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	95.09
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.08
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.08
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.06
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.03
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.02
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.99
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.97
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.96
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.96
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.95
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	94.93
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.92
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.89
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	94.89
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	94.88
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	94.85
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.85
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.82
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.79
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.79
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.77
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.74
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	94.7
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	94.68
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	94.68
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	94.64
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.61
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	94.61
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.56
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	94.56
1e69_A	322	Chromosome segregation SMC protein; structural mai	94.55
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	94.54
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.52
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	94.5
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	94.47
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.46
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.45
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.44
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.43
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	94.4
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	94.29
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	94.23
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.21
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	94.08
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	94.07
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	94.03
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	93.97
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.94
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	93.86
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	93.85
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	93.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.8
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	93.75
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	93.74
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	93.71
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	93.68
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	93.64
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	93.62
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	93.58
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	93.54
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	93.5
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	93.49
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	93.47
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.45
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	93.41
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	93.36
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	93.3
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	93.09
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	92.98
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	92.98
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	92.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	92.91
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.91
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	92.87
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	92.87
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	92.87
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	92.87
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	92.84
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	92.81
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	92.75
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	92.66
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	92.66
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	92.6
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	92.57
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.54
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	92.53
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	92.43
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	92.41
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	92.38
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	92.3
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	92.29
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	92.22
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	92.16
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	92.11
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	92.09
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	91.93
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	91.84
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	91.73
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	91.68
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	91.66
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	91.62
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	91.58
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	91.55
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	91.54
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	91.53
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	91.41
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	91.36
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	91.27
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	91.15
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	91.07
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	90.95
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	90.91
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	90.66
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	90.52
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	90.41
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	90.41
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	90.31
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	90.3
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	90.26
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	90.23
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	90.2
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	90.07
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	89.89
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	89.87
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	89.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	89.7
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	89.46
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	89.29
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	89.08
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	89.08
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	88.81
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	88.57
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	88.55
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	88.49
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	88.41
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	88.19
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.13
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	87.94
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	87.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	87.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	87.82
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	87.42
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	87.03
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	86.93
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	86.88
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	86.75
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	86.47
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	86.06
1wb1_A	482	Translation elongation factor SELB; selenocysteine	85.95
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	85.39
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	85.18
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	85.02
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	84.84
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	84.69
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	84.28
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	83.16
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	82.59
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	82.53
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	82.46

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.65  E-value=1.6e-16  Score=138.06  Aligned_cols=66  Identities=12%  Similarity=0.172  Sum_probs=59.0

Q ss_pred             cchHHHHHHHHHhhcCC---CccEEEEEcCCCCcHHHHHHHHHH--HhccCCCCceEEEEEcCCCC--ChHhh
Q 046665          137 ESRKSTLKEILGSLSNH---NFNMIGVYGMGGIGKTMLVKEVAG--QAKGNNLFEKVISAQVSQTP--QIKKI  202 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~~---~~~vI~IvG~gGiGKTTLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i  202 (204)
                      +||+.++++|.++|..+   +.++|+|+||||+||||||+++|+  +.+++.+|++++||+||+.+  ++.++
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~  203 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDL  203 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHH
Confidence            59999999999999743   689999999999999999999999  67888899999999999985  55554

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.51  E-value=3.2e-14  Score=98.81  Aligned_cols=68  Identities=18%  Similarity=0.234  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 046665            3 IVTFVVTKVAEYLVAPIIHPFTYYCTYKTNFEKLKNDVDKLKNARDSH-----------IEEWLISVDEVISEVRKLIEV   71 (204)
Q Consensus         3 ~v~~~l~kl~~~l~~~~~~~~~~~~~~~~~~~~L~~el~~l~~~l~~~-----------~~~wl~~vr~~~~d~ed~ld~   71 (204)
                      +|+++++||++.+..    ++.++.+++++++.|+++|+.|++++.++           ++.|+.+||+++||+||+||+
T Consensus         2 ~v~~ll~KL~~ll~~----E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~   77 (115)
T 3qfl_A            2 AISNLIPKLGELLTE----EFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK   77 (115)
T ss_dssp             TTCSHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH----HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788898888875    55788999999999999999999999886           789999999999999999999


Q ss_pred             HHh
Q 046665           72 EEK   74 (204)
Q Consensus        72 ~~~   74 (204)
                      |..
T Consensus        78 f~~   80 (115)
T 3qfl_A           78 FLV   80 (115)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            954

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.43  E-value=5.5e-14  Score=128.12  Aligned_cols=67  Identities=15%  Similarity=0.096  Sum_probs=60.5

Q ss_pred             ccchHHHHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCce-EEEEEcCCCCChHhh
Q 046665          136 FESRKSTLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEK-VISAQVSQTPQIKKI  202 (204)
Q Consensus       136 ~~g~~~~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i  202 (204)
                      .+||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|++ ++||++++.++...+
T Consensus       130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~I  198 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV  198 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHH
T ss_pred             CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHH
Confidence            48999999999999975 56899999999999999999999998877778997 999999999987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.32  E-value=8.8e-13  Score=123.25  Aligned_cols=66  Identities=24%  Similarity=0.344  Sum_probs=55.8

Q ss_pred             CccccchHHHHHHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc-CCCC-ceEEEEEcCCCCC
Q 046665          133 FIHFESRKSTLKEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG-NNLF-EKVISAQVSQTPQ  198 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~  198 (204)
                      ...++||+.++++|.++|.  +++.++|+|+||||+||||||+++|++.+. ..+| +.+.||++++.++
T Consensus       123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (1249)
T 3sfz_A          123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK  192 (1249)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred             CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence            4569999999999999995  457899999999999999999999998643 4445 5677999998654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.24  E-value=4.5e-12  Score=110.70  Aligned_cols=64  Identities=25%  Similarity=0.315  Sum_probs=55.8

Q ss_pred             CccccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcc-CCCC-ceEEEEEcCCC
Q 046665          133 FIHFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAKG-NNLF-EKVISAQVSQT  196 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~~-~~~F-~~~~wv~vs~~  196 (204)
                      ...++||+.+++.|.++|..  ++.++|+|+||||+||||||+.+|++.++ ..+| +.++|+++++.
T Consensus       123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~  190 (591)
T 1z6t_A          123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ  190 (591)
T ss_dssp             CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence            45689999999999999973  56889999999999999999999998654 5679 57999999876

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.43  E-value=3.5e-07  Score=74.00  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=45.3

Q ss_pred             CccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          133 FIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      +..++||+.+.+.|.+++..+  +++.|+|++|+|||||++.+.+..      . .+|+.++.
T Consensus        11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~   64 (350)
T 2qen_A           11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRE   64 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHH
T ss_pred             hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeec
Confidence            467899999999999988754  799999999999999999999864      1 66776543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.39  E-value=2.1e-07  Score=77.29  Aligned_cols=68  Identities=15%  Similarity=0.087  Sum_probs=48.4

Q ss_pred             CccccchHHHHHHHHHhh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHHHhccC---CCCce-EEEEEcCCCCCh
Q 046665          133 FIHFESRKSTLKEILGSL-S----N--HNFNMIGV--YGMGGIGKTMLVKEVAGQAKGN---NLFEK-VISAQVSQTPQI  199 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L-~----~--~~~~vI~I--vG~gGiGKTTLa~~v~~~~~~~---~~F~~-~~wv~vs~~~~~  199 (204)
                      +..++||+.+++.|..+| .    .  .....+.|  +|++|+|||||++.+++.....   ..|+. .+|+..+...+.
T Consensus        21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (412)
T 1w5s_A           21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL  100 (412)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence            367899999999999988 3    2  24455555  9999999999999999875431   12332 577776555444


Q ss_pred             H
Q 046665          200 K  200 (204)
Q Consensus       200 ~  200 (204)
                      .
T Consensus       101 ~  101 (412)
T 1w5s_A          101 Y  101 (412)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.38  E-value=7.6e-07  Score=72.16  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=45.8

Q ss_pred             CCccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          132 GFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       132 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      .+..++||+.+.+.|.+ +..   +++.|+|++|+|||||++.+.+....    . .+|+....
T Consensus        11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~----~-~~~~~~~~   65 (357)
T 2fna_A           11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL----P-YIYLDLRK   65 (357)
T ss_dssp             SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC----C-EEEEEGGG
T ss_pred             CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC----C-EEEEEchh
Confidence            34678999999999999 765   69999999999999999999987642    2 57887764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.32  E-value=6.8e-07  Score=73.19  Aligned_cols=63  Identities=27%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             CccccchHHHHHHHHHhhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccCCC-CceEEEEEcCC
Q 046665          133 FIHFESRKSTLKEILGSLS----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNL-FEKVISAQVSQ  195 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~-F~~~~wv~vs~  195 (204)
                      +..++||+.+++.+.+++.    .+....+.|+|++|+|||||++.+.+....... --..+|+..++
T Consensus        19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~   86 (386)
T 2qby_A           19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ   86 (386)
T ss_dssp             CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            3678999999999999887    345779999999999999999999987542210 12356776543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.30  E-value=1e-06  Score=64.72  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=41.4

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..++.+.+++.......+-|+|..|+||||||+.+.+..
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999987777778999999999999999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.25  E-value=2.4e-06  Score=64.30  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=40.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..++.+.+++.......+-|+|.+|+||||||+.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4588999999999999987766669999999999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.20  E-value=1.8e-06  Score=63.26  Aligned_cols=46  Identities=24%  Similarity=0.259  Sum_probs=41.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++...+.+.+++.......+-|+|..|+||||||+.+.+..
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            4688999999999999987767778899999999999999999875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.19  E-value=3.8e-06  Score=68.79  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=49.4

Q ss_pred             CccccchHHHHHHHHHhhcC----CCccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCC
Q 046665          133 FIHFESRKSTLKEILGSLSN----HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQ  198 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~  198 (204)
                      +..++|++.+++.+..+|..    ...+.+.|+|++|+||||||+.+.+.....    ..--..+|+..+...+
T Consensus        18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   91 (387)
T 2v1u_A           18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET   91 (387)
T ss_dssp             CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence            36789999999999998843    467789999999999999999999875321    0012357777665444

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.16  E-value=7.6e-06  Score=67.18  Aligned_cols=65  Identities=15%  Similarity=0.151  Sum_probs=49.5

Q ss_pred             ccccchHHHHHHHHHhhcC----CCcc--EEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665          134 IHFESRKSTLKEILGSLSN----HNFN--MIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI  199 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~----~~~~--vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  199 (204)
                      ..++||+.+++.+..+|..    ....  .+.|+|..|+|||||++.+.+.......+ ..+|+..+...+.
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~i~~~~~~~~   87 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNF   87 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-EEEEEETTTCCSH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCe-eEEEEeCccCCCH
Confidence            5689999999999998864    3334  89999999999999999999876533112 3677776665543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.10  E-value=2.4e-06  Score=70.17  Aligned_cols=62  Identities=16%  Similarity=0.101  Sum_probs=46.8

Q ss_pred             ccccchHHHHHHHHHhhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccC----CC--CceEEEEEcCC
Q 046665          134 IHFESRKSTLKEILGSLS----NHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN----NL--FEKVISAQVSQ  195 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~--F~~~~wv~vs~  195 (204)
                      ..++||+.+++.+..+|.    .+..+.+.|+|++|+||||||+.+++.....    ..  .-..+|+..+.
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~   91 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE   91 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence            568999999999887764    3456799999999999999999999875221    11  23467776554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.05  E-value=4.8e-06  Score=63.30  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=40.6

Q ss_pred             ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|++..++.+..++..+. .+.+.|+|++|+||||||+.+.+...
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            458999999999999987543 46899999999999999999998764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.02  E-value=4.8e-06  Score=66.64  Aligned_cols=69  Identities=23%  Similarity=0.293  Sum_probs=49.1

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      ..++|++..++.+.+++..+....+-++|++|+||||+|+.+.+.......-...+++..+.......+
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i   89 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV   89 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH
Confidence            458899999999999998776655999999999999999999987532111112455555544444333

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.79  E-value=2.4e-05  Score=62.57  Aligned_cols=46  Identities=15%  Similarity=0.168  Sum_probs=40.7

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..++.+.+++..+....+-++|+.|+||||+|+.+.+..
T Consensus        25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4588999999999999987766669999999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.73  E-value=8.5e-05  Score=56.55  Aligned_cols=54  Identities=13%  Similarity=0.164  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          140 KSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       140 ~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      +...+.+..++.......+-|+|..|+||||||+.+.+.....  .....|+..+.
T Consensus        37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~   90 (242)
T 3bos_A           37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI   90 (242)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence            4556667666666567889999999999999999999876533  23456666553

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.70  E-value=5.4e-05  Score=59.67  Aligned_cols=48  Identities=27%  Similarity=0.351  Sum_probs=39.3

Q ss_pred             CccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -..++|.+..++.|...+..             ....-+-|+|..|+||||||+.+.+...
T Consensus        16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45688999999888887632             3456799999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.66  E-value=7.1e-05  Score=55.95  Aligned_cols=52  Identities=15%  Similarity=0.158  Sum_probs=36.7

Q ss_pred             HHHHHHHHhhcCC----CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          141 STLKEILGSLSNH----NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       141 ~~~~~l~~~L~~~----~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      ...+.+..++...    ....+-|+|.+|+||||||+.+++....+  ....++++.+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~   91 (202)
T 2w58_A           36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP   91 (202)
T ss_dssp             HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH
T ss_pred             HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH
Confidence            3455566666532    22789999999999999999999986533  3346666653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.61  E-value=7.9e-05  Score=55.93  Aligned_cols=41  Identities=15%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHhhcC---CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          139 RKSTLKEILGSLSN---HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       139 ~~~~~~~l~~~L~~---~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +++..+.|.+.+..   ....+|+|.|..|+|||||++.+....
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~   46 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL   46 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45566777777754   356799999999999999999998754

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.60  E-value=9.3e-05  Score=58.92  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=40.4

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..++.+.+++..+....+-++|..|+||||+|+.+.+..
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            4588999999999999987766569999999999999999999874

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.59  E-value=7.3e-05  Score=63.54  Aligned_cols=46  Identities=24%  Similarity=0.294  Sum_probs=40.2

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..+..++..|......-+-++|.+|+||||||+.+.+..
T Consensus       180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999976655566799999999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.59  E-value=0.00011  Score=58.57  Aligned_cols=46  Identities=20%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             cccchHHHHHHHHHhhc---------------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSLS---------------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~---------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++|.+..++.|.+++.               ......+-++|..|+||||||+.+.+...
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            47888888777776543               23455789999999999999998887654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.58  E-value=0.00014  Score=58.31  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=38.7

Q ss_pred             ccccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|++..+..+..++..     .....+-|+|..|+||||||+.+.+...
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999888888887752     3456788999999999999999998764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.57  E-value=4.8e-05  Score=61.61  Aligned_cols=46  Identities=17%  Similarity=0.263  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..++.+..++..+....+-++|..|+||||||+.+.+..
T Consensus        37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999987755558999999999999999998874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.57  E-value=6.7e-05  Score=55.12  Aligned_cols=42  Identities=21%  Similarity=0.169  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHhhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          139 RKSTLKEILGSLSN---HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       139 ~~~~~~~l~~~L~~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .....+.+.+++.+   .....+.|+|..|+|||||++.+.+...
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44445555555543   3457899999999999999999998753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.56  E-value=9.4e-05  Score=55.78  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=31.0

Q ss_pred             HHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          141 STLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       141 ~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+.|.+.+.+  ....+|+|+|..|+|||||++.+..-..
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345566666653  4567999999999999999999987644

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.55  E-value=0.00018  Score=61.87  Aligned_cols=46  Identities=28%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             ccccchHHHHHHHHHhhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSN-----------------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-----------------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..++.+.+||..                 +..+.+-|+|+.|+||||||+.+.+..
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            5689999999999999864                 134789999999999999999999876

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.52  E-value=7.6e-05  Score=60.59  Aligned_cols=45  Identities=11%  Similarity=0.132  Sum_probs=38.3

Q ss_pred             ccccchHHHHHHHHHhh-cCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSL-SNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L-~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..++|.+...+.+.+++ ..+....+.|+|..|+|||||++.+.+.
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999998 6655444999999999999999999885

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.50  E-value=8.1e-05  Score=60.11  Aligned_cols=47  Identities=13%  Similarity=0.111  Sum_probs=40.9

Q ss_pred             ccccchHHHHHHHHHhhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS----NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+.||+++.+.|...|.    .+....+-|+|+.|.|||++++.|.+...
T Consensus        20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            347899999999988775    46788899999999999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.49  E-value=0.00011  Score=52.20  Aligned_cols=45  Identities=13%  Similarity=0.160  Sum_probs=33.5

Q ss_pred             cccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          135 HFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++|......++.+.+..  ....-|-|+|..|+|||+||+.+++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            467887788887776642  233446799999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.48  E-value=0.00037  Score=53.97  Aligned_cols=47  Identities=23%  Similarity=0.195  Sum_probs=35.1

Q ss_pred             ccccchHHHHHHHHHhh---cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSL---SN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L---~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.|.+++   ..         ...+-+-++|..|+||||||+.+.+...
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788887776665543   22         2345678999999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.47  E-value=0.00013  Score=59.43  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=40.1

Q ss_pred             ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|++..++.+.+++..+. .+.+-|+|..|+||||||+.+.+...
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            458999999999999887654 46788999999999999999988754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.46  E-value=0.00023  Score=56.36  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=38.0

Q ss_pred             ccccchHHHHHHHHHhhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+..++..            ...+-+-|+|..|+||||||+.+.+...
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4688999988888877631            2356889999999999999999998653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.46  E-value=0.00015  Score=58.57  Aligned_cols=47  Identities=19%  Similarity=0.213  Sum_probs=39.2

Q ss_pred             ccccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|++..++.+..++..     .....+-|+|..|+||||||+.+.+...
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            5689999999988888752     3456789999999999999999987643

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.44  E-value=0.00018  Score=57.42  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=37.3

Q ss_pred             ccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..++.|.+++..             ...+.|.++|..|+||||||+.+.+...
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4588988887777776531             3456799999999999999999998654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.41  E-value=0.00013  Score=61.65  Aligned_cols=47  Identities=21%  Similarity=0.355  Sum_probs=40.1

Q ss_pred             ccccchHHHH---HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTL---KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~---~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..+   ..|...+..+....+-++|..|+||||||+.+.+...
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4688988877   6777777777788899999999999999999998754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.40  E-value=0.00025  Score=57.84  Aligned_cols=48  Identities=15%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             ccccchHHHHHH---HHHhhcCCCc--cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          134 IHFESRKSTLKE---ILGSLSNHNF--NMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       134 ~~~~g~~~~~~~---l~~~L~~~~~--~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ..++|++..++.   +.+.+..+..  +.+-|+|+.|+||||||+.+.+....
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468899887665   4555555443  58999999999999999999998763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.39  E-value=0.00019  Score=58.18  Aligned_cols=46  Identities=15%  Similarity=0.213  Sum_probs=38.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.|..++..+.+.-+.++|+.|+||||||+.+.+..
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4467888888888888887766558999999999999999998764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.37  E-value=0.00013  Score=59.17  Aligned_cols=47  Identities=21%  Similarity=0.296  Sum_probs=35.6

Q ss_pred             ccccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+-..+..     .....+.++|+.|+||||||+.+.+...
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3467777666666555532     3457899999999999999999998764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.32  E-value=0.00019  Score=65.37  Aligned_cols=46  Identities=22%  Similarity=0.283  Sum_probs=40.7

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++.++..+++.|.....+-+.++|.+|+||||||+.+.+..
T Consensus       170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999987666667899999999999999999875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.31  E-value=0.0004  Score=56.82  Aligned_cols=47  Identities=21%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             ccccchHHHHHHHHHhhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS------------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.|.+.+.            ....+-|-|+|..|+||||||+.+.+...
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            457899998888887763            13466899999999999999999998653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.29  E-value=0.00028  Score=53.41  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=29.3

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+.+-..+......+|.|+|.+|+|||||+..+.....
T Consensus        26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34444444455788999999999999999999987743

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.28  E-value=0.00027  Score=63.45  Aligned_cols=46  Identities=24%  Similarity=0.294  Sum_probs=40.4

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..++.++..|......-+-++|.+|+||||+|+.+.+..
T Consensus       180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999977655567899999999999999999874

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.28  E-value=0.00029  Score=55.85  Aligned_cols=47  Identities=23%  Similarity=0.280  Sum_probs=37.5

Q ss_pred             ccccchHHHHHHHHHhhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN--------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+...+..              ....-+-++|..|+||||||+.+.+...
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578999888888776643              2355688999999999999999998764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.27  E-value=0.00019  Score=53.64  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=25.0

Q ss_pred             CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          152 NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .....+|.|+|+.|+|||||++.+.....
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34568999999999999999999987654

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.27  E-value=0.00034  Score=62.79  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=40.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|++..+..+++.|......-+-++|..|+||||||+.+.+..
T Consensus       186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999987766777899999999999999999864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.27  E-value=0.00019  Score=53.71  Aligned_cols=27  Identities=33%  Similarity=0.286  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.|+|+.|+||||+++.+.....
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999987653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.26  E-value=0.00019  Score=53.69  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=23.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....+|+|+|+.|+|||||++.+....
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            356799999999999999999998765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.24  E-value=0.00023  Score=53.68  Aligned_cols=42  Identities=19%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +.+...+.+...+......+|.|+|.+|+|||||+..+....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            444455555555555678899999999999999999988764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.23  E-value=0.00014  Score=53.22  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEV  175 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v  175 (204)
                      .-.+++|+|..|+|||||++.+
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3568999999999999999953

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.22  E-value=0.00043  Score=53.70  Aligned_cols=47  Identities=28%  Similarity=0.319  Sum_probs=34.2

Q ss_pred             ccccchHHHHHHHHHh---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGS---LSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.+...   +...         ..+-+.|+|..|+||||||+.+.+...
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            4678888766655443   3221         234588999999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.22  E-value=0.00034  Score=55.76  Aligned_cols=28  Identities=18%  Similarity=0.106  Sum_probs=24.1

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +...+|+|+|..|+|||||++.+.....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4577999999999999999999887543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.22  E-value=0.00058  Score=55.10  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             CccccchHHHHHHHHHhhc---------C---CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          133 FIHFESRKSTLKEILGSLS---------N---HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~---------~---~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.++.|.+..++.|.+.+.         .   ...+-|-++|+.|+|||+||+.+.+..
T Consensus        11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            3567898888777776552         1   134678999999999999999999875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.21  E-value=0.0002  Score=53.54  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+|.|.|+.|+||||||+.+.....
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999987653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.20  E-value=0.00068  Score=54.56  Aligned_cols=48  Identities=23%  Similarity=0.300  Sum_probs=38.1

Q ss_pred             CccccchHHHHHHHHHhhc----------C--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLS----------N--HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----------~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -..++|.+..++.|...+.          .  ...+-+-++|..|+|||+||+.+.+...
T Consensus        17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            3568899999888888762          1  1245789999999999999999998754

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=97.19  E-value=0.0002  Score=57.74  Aligned_cols=26  Identities=31%  Similarity=0.615  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ++.+||+|.|-|||||||.+-.+---
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~a   71 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAA   71 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHH
Confidence            36899999999999999988877654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.17  E-value=0.00052  Score=55.02  Aligned_cols=47  Identities=15%  Similarity=0.010  Sum_probs=40.1

Q ss_pred             ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+.....+.+++..+. .+++-+.|..|+||||+|+.+.+...
T Consensus        26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~   73 (324)
T 3u61_B           26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN   73 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred             HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            568899999999999998655 46778889999999999999998753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.17  E-value=0.00055  Score=55.96  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=32.5

Q ss_pred             cchHHHHHHHHHhhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          137 ESRKSTLKEILGSLS----NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~----~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ++.+...+.+++.|.    .+....|.|+|+.|+||||+++.+.....
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            344555666666653    45566799999999999999998887643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.16  E-value=0.00033  Score=50.10  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=29.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      .-..+.|+|..|+|||||++.+++..... .+. .+++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~-~~~~~~~   73 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKN-AAYIDAA   73 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCC-EEEEETT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCc-EEEEcHH
Confidence            56789999999999999999999876432 122 4555544

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.14  E-value=0.00032  Score=50.78  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+..+|.|.|+.|+||||+++.+-+.
T Consensus         5 ~~~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            5 HHMQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             cccceEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999998765

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.14  E-value=0.00032  Score=54.15  Aligned_cols=27  Identities=19%  Similarity=0.225  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+|+|+.|+|||||++.+.+...
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            357999999999999999999996543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.12  E-value=0.00043  Score=52.05  Aligned_cols=44  Identities=20%  Similarity=0.100  Sum_probs=33.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      .-.++.|+|.+|+|||||+..+.. ..    =..++|++....++...+
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~   62 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERL   62 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHH
Confidence            346999999999999999999987 21    235788887765555443

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.11  E-value=0.0003  Score=52.74  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+|.|+|+.|+|||||++.+....
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            35689999999999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.11  E-value=0.00028  Score=53.06  Aligned_cols=26  Identities=15%  Similarity=0.246  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|..|+|||||++.+..-.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45699999999999999999998754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.10  E-value=0.00034  Score=51.18  Aligned_cols=24  Identities=42%  Similarity=0.526  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+|.|+|+.|+||||+++.+.+.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            467889999999999999999865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.09  E-value=0.00035  Score=55.55  Aligned_cols=46  Identities=17%  Similarity=0.284  Sum_probs=35.8

Q ss_pred             cccchHHHHHHHHHhhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSLSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++|.+..++.+...+...         ....+.++|..|+||||||+.+.+...
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            4678888777777766431         235899999999999999999998753

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.09  E-value=0.00012  Score=51.93  Aligned_cols=45  Identities=7%  Similarity=0.045  Sum_probs=31.7

Q ss_pred             cccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          135 HFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++|.+..+.++.+.+..  ....-|-|+|..|+|||+||+.+++..
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            467877777777776542  233346799999999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.08  E-value=0.00031  Score=56.53  Aligned_cols=28  Identities=21%  Similarity=0.226  Sum_probs=24.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+|+|+|..|+|||||++.+..-..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            4567999999999999999999997654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.07  E-value=0.0008  Score=55.59  Aligned_cols=48  Identities=23%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             CccccchHHHHHHHHHhhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLSN------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -..++|.+..+..|..++..            ...+-+-|+|..|+|||+||+.+.+...
T Consensus       114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~  173 (389)
T 3vfd_A          114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN  173 (389)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            35689999999888887721            2346789999999999999999987643

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.07  E-value=0.0012  Score=49.83  Aligned_cols=46  Identities=26%  Similarity=0.201  Sum_probs=32.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIK  200 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~  200 (204)
                      -.+++|+|..|+|||||++.+.......    ..-...+|+.-...++..
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~   74 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE   74 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence            4699999999999999999998743221    013457787765544443

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.07  E-value=0.00069  Score=53.02  Aligned_cols=46  Identities=15%  Similarity=0.168  Sum_probs=32.7

Q ss_pred             cccchHHHHHHHHH-------hhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILG-------SLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~-------~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++|.....+.+++       .+.   .....-+-|+|..|+||||||+.+.+...
T Consensus        34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            35565555444444       332   34567889999999999999999998744

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.06  E-value=0.00031  Score=53.47  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.+++|+|+.|+|||||++.+..-.
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45689999999999999999998753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.06  E-value=0.00036  Score=52.34  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...+|+|+|..|+|||||++.+...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999999864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.06  E-value=0.00034  Score=54.05  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=23.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+|+|.|..|+|||||++.+....
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999998754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.06  E-value=0.00098  Score=50.83  Aligned_cols=47  Identities=15%  Similarity=0.032  Sum_probs=34.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIK  200 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~  200 (204)
                      .-.++.|+|..|+|||||++.+........    .-..++|+.....++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~   73 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE   73 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence            346999999999999999999987532211    12468888877765544

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.05  E-value=0.00038  Score=54.13  Aligned_cols=25  Identities=36%  Similarity=0.380  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...+|+|+|+.|+|||||++.+...
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4569999999999999999999844

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.04  E-value=0.00039  Score=50.34  Aligned_cols=27  Identities=26%  Similarity=0.250  Sum_probs=23.6

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-.+++++|..|.|||||++.+..-.
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            345699999999999999999999764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.02  E-value=0.00091  Score=51.71  Aligned_cols=47  Identities=28%  Similarity=0.336  Sum_probs=31.9

Q ss_pred             ccccchHHHHHHHHHh---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGS---LSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..+..+.+.   +...         -.+-+.|+|..|+|||||++.+.+...
T Consensus        16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4577877655544443   2210         112389999999999999999998654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.02  E-value=0.00046  Score=55.36  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+|+|.+|+|||||++.+..-..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            467999999999999999999987644

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.02  E-value=0.00046  Score=50.82  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.|+|+.|+||||+++.+.....
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999987654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.02  E-value=0.00054  Score=51.10  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=23.3

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....+|.|.|+.|+||||+++.+.+..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.00  E-value=0.00056  Score=53.96  Aligned_cols=47  Identities=23%  Similarity=0.240  Sum_probs=32.6

Q ss_pred             ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..++.|...+.    .         .-.+=+.++|+.|+||||||+.+.....
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            456788777777665432    1         0112299999999999999999998654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.98  E-value=0.0013  Score=52.79  Aligned_cols=39  Identities=33%  Similarity=0.471  Sum_probs=29.6

Q ss_pred             HHHHHHHhhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          142 TLKEILGSLSNH--NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       142 ~~~~l~~~L~~~--~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+..++...  ....+-|+|+.|+||||||+.+.+...
T Consensus        22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            344455555443  457899999999999999999998753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.97  E-value=0.0005  Score=53.58  Aligned_cols=47  Identities=26%  Similarity=0.337  Sum_probs=32.3

Q ss_pred             ccccchHHHHHHHHHhhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS---N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~---~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+.+.+.   .         ...+-+-++|..|+||||||+.+.+...
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            456776665555544332   1         1233477999999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.97  E-value=0.00056  Score=50.61  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..+|.|.|+.|+||||+++.+....
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998753

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.97  E-value=0.0013  Score=55.33  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             CccccchHHHHHHHHHhhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          133 FIHFESRKSTLKEILGSLS------------NHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.++.|.+..++.|...+.            ....+-|-++|+.|+|||+||+.+.+..
T Consensus       133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            3567899988888887652            1234678999999999999999999875

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.96  E-value=0.00069  Score=52.76  Aligned_cols=46  Identities=15%  Similarity=0.229  Sum_probs=32.8

Q ss_pred             cccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++|.+.....+.+.+..  ....-|-|+|..|+|||+||+.+++...
T Consensus         7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            467887777777665532  2335677999999999999999998643

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.96  E-value=0.00053  Score=53.19  Aligned_cols=28  Identities=21%  Similarity=0.228  Sum_probs=23.7

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+|+|.|+.|+||||+|+.+-....
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3567999999999999999999987544

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.96  E-value=0.0005  Score=52.46  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-.+++|+|+.|+|||||.+.+.....
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            456999999999999999999997643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.95  E-value=0.00044  Score=53.33  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568999999999999999999853

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.95  E-value=0.001  Score=54.42  Aligned_cols=47  Identities=23%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             ccccchHHHHHHHHHhhc---------C---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS---------N---HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~---------~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.|...+.         .   ...+-|-++|..|+|||+||+.+.+...
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            457898888888877652         1   1234588999999999999999998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.93  E-value=0.0011  Score=52.67  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+|-|.|+.|+|||||++.+.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.92  E-value=0.00057  Score=52.92  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .. .+++|+|..|+|||||.+.+..-
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence            35 89999999999999999999864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.92  E-value=0.00048  Score=52.71  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999853

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.92  E-value=0.00062  Score=51.15  Aligned_cols=26  Identities=15%  Similarity=0.371  Sum_probs=23.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.|+|+.|+|||||++.+....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            46789999999999999999998753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.90  E-value=0.0013  Score=53.37  Aligned_cols=28  Identities=29%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+|+|+|..|+|||||++.+.....
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4568999999999999999999987644

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.89  E-value=0.001  Score=51.71  Aligned_cols=26  Identities=23%  Similarity=0.149  Sum_probs=23.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+|.++|+.|+||||+|+.+....
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998764

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.88  E-value=0.0021  Score=51.65  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=36.5

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|++..++.+...+..+  .-+-++|..|+|||+||+.+.+...
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45778888888887777653  3678999999999999999988653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.88  E-value=0.00046  Score=52.25  Aligned_cols=24  Identities=33%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|+|..|+|||||++.+..-
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.87  E-value=0.00069  Score=54.27  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+++|+|..|+|||||++.+..-..
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999987643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.86  E-value=0.00093  Score=49.77  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.|.|+.|+||||+|+.+.....
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345899999999999999999987653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.86  E-value=0.00059  Score=52.70  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.85  E-value=0.00078  Score=54.42  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+|.|..|+|||||++.+..-..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456999999999999999999987644

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.85  E-value=0.00064  Score=52.89  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999973

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.85  E-value=0.00059  Score=53.52  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999853

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.84  E-value=0.00077  Score=50.36  Aligned_cols=26  Identities=31%  Similarity=0.508  Sum_probs=23.0

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+-.+|+|+|+.|+||||+++.+-+.
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            45679999999999999999998765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.83  E-value=0.00061  Score=53.84  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||++.+..
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999999985

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.83  E-value=0.00041  Score=52.99  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=16.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH-HH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA-GQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~-~~  178 (204)
                      -.+|+|+|+.|+|||||++.+. ..
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4689999999999999999998 54

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.82  E-value=0.00081  Score=53.89  Aligned_cols=28  Identities=14%  Similarity=0.188  Sum_probs=24.1

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+|+|+|..|+|||||++.+..-..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4557999999999999999999987543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.81  E-value=0.00066  Score=52.47  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999853

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.81  E-value=0.00066  Score=53.03  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999853

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.81  E-value=0.00068  Score=52.03  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.81  E-value=0.00071  Score=54.01  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+++|.+|+||||++..+.....
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999986654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.80  E-value=0.00071  Score=53.18  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999974

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.80  E-value=0.00097  Score=53.36  Aligned_cols=45  Identities=13%  Similarity=0.307  Sum_probs=35.1

Q ss_pred             cccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          135 HFESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++|....+..+.+.+..  ....-|-|+|..|+|||++|+.+++..
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            467887777777776642  334557799999999999999999864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.80  E-value=0.00068  Score=53.30  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568999999999999999999853

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.80  E-value=0.00069  Score=53.18  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            4568999999999999999999853

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.78  E-value=0.00096  Score=53.82  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=34.0

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..+..+...+......-+-++|..|+|||+||+.+.+...
T Consensus        24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence            45788877655544444333333488999999999999999998653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.78  E-value=0.00064  Score=51.70  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.77  E-value=0.0018  Score=52.95  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=36.1

Q ss_pred             cccchHHHHHHHHHhhc-------------C--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSLS-------------N--HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~-------------~--~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++|.+..++.+...+.             .  .....|-++|..|+|||++|+.+.+...
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            36788888888777662             1  1346789999999999999999998764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.77  E-value=0.00088  Score=52.98  Aligned_cols=23  Identities=22%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      ...+|+|.|+.|+||||+|+.+-
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999999987

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.76  E-value=0.00077  Score=52.38  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3468999999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.76  E-value=0.00077  Score=52.19  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999853

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.75  E-value=0.00088  Score=52.19  Aligned_cols=26  Identities=31%  Similarity=0.216  Sum_probs=22.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.+|.|+|+.|+||||+++.+.....
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999987543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.74  E-value=0.001  Score=50.03  Aligned_cols=28  Identities=25%  Similarity=0.216  Sum_probs=23.8

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+|.|.|+.|+||||+++.+.....
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3457899999999999999999987543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.74  E-value=0.0008  Score=52.60  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999853

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.74  E-value=0.00081  Score=52.66  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.74  E-value=0.001  Score=54.60  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+|+|..|+|||||++.+..-..
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence            357999999999999999999987644

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.74  E-value=0.0013  Score=52.25  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=24.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+..+-++|+.|+|||+||+.+.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456788999999999999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.73  E-value=0.00084  Score=52.91  Aligned_cols=25  Identities=16%  Similarity=0.216  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.72  E-value=0.0024  Score=52.11  Aligned_cols=48  Identities=23%  Similarity=0.153  Sum_probs=34.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCC----ceEEEEEcCCCCChHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLF----EKVISAQVSQTPQIKK  201 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~  201 (204)
                      .-.++.|+|..|+|||||+.++..........    ..++|+.-...+..+.
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~  181 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER  181 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence            45799999999999999999999764211001    2458888766654443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.71  E-value=0.0022  Score=52.59  Aligned_cols=26  Identities=27%  Similarity=0.347  Sum_probs=22.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+-++|..|+||||||+.+.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            35688999999999999999998763

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.71  E-value=0.00087  Score=52.65  Aligned_cols=25  Identities=36%  Similarity=0.395  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999853

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.71  E-value=0.00087  Score=52.16  Aligned_cols=25  Identities=28%  Similarity=0.487  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3468999999999999999999854

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.70  E-value=0.0019  Score=54.36  Aligned_cols=39  Identities=23%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             HHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          142 TLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       142 ~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+........ ...+.|+|..|+||||||+.+.+...
T Consensus       116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3444455444433 77899999999999999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.70  E-value=0.0009  Score=52.17  Aligned_cols=25  Identities=28%  Similarity=0.507  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.69  E-value=0.0009  Score=52.98  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.69  E-value=0.0011  Score=48.99  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.|+|+|..|+|||||.+.+....
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4578999999999999999998753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.69  E-value=0.0022  Score=52.43  Aligned_cols=37  Identities=22%  Similarity=0.419  Sum_probs=28.3

Q ss_pred             HHHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          143 LKEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       143 ~~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...++..+.  .+...+|+|+|.+|+|||||+..+....
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            444555554  3567899999999999999999987553

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0031  Score=52.88  Aligned_cols=48  Identities=31%  Similarity=0.389  Sum_probs=37.8

Q ss_pred             CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.++.|.+..++.|.+.+.    .         ...+=|-++|++|.|||+||+.+.+...
T Consensus       171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899988888777542    1         2356689999999999999999998765

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.66  E-value=0.0029  Score=53.41  Aligned_cols=47  Identities=15%  Similarity=0.091  Sum_probs=36.0

Q ss_pred             ccccchHHHHHHHHH---hhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILG---SLSNH--NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~---~L~~~--~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+..   ++..+  ..+-+-++|+.|+|||+||+.+.+...
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            568899887775444   34333  235688999999999999999999865

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.65  E-value=0.0011  Score=53.10  Aligned_cols=27  Identities=30%  Similarity=0.236  Sum_probs=23.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.|+|.+|+||||++..+.....
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            467999999999999999999987654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.65  E-value=0.0012  Score=51.80  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.9

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..-.+++|+|..|+|||||++.+..-
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHh
Confidence            45579999999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.64  E-value=0.0015  Score=49.72  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=24.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.+||-|.|++|+||||.|+.+.+...
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999998754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.62  E-value=0.0028  Score=54.09  Aligned_cols=46  Identities=24%  Similarity=0.308  Sum_probs=37.0

Q ss_pred             ccccchHHHHHHHHHhhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLS-------------NHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~-------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..+.|.+..+..|.+++.             -....-+-|+|..|+|||+||+.+.+..
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            457899988888877763             1345568999999999999999998865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.60  E-value=0.0014  Score=55.95  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+|+|..|+|||||++.+..-..
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence            356999999999999999999987644

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.59  E-value=0.0017  Score=55.60  Aligned_cols=45  Identities=13%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+...+..+  .-|-++|..|+|||+||+.+.+...
T Consensus        22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence            45778888888777766543  3678999999999999999998653

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.59  E-value=0.0012  Score=51.84  Aligned_cols=48  Identities=27%  Similarity=0.385  Sum_probs=32.8

Q ss_pred             CccccchHHHHHHHHHhh---cCC------C---ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSL---SNH------N---FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L---~~~------~---~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.+++|.+..+..+.+..   ...      +   .+-+.|+|..|+|||||++.+.+...
T Consensus        39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence            346778776655554432   110      1   12289999999999999999998654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.56  E-value=0.0014  Score=52.49  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=23.7

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-.+++|+|..|+|||||++.+..-.
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            456799999999999999999998754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.0044  Score=52.11  Aligned_cols=49  Identities=27%  Similarity=0.359  Sum_probs=37.6

Q ss_pred             CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      -.++.|.+..++.|...+.    .         ...+=|-++|++|.|||+||+.|.+....
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~  241 (437)
T 4b4t_L          180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA  241 (437)
T ss_dssp             SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            3556788887777766542    2         24578999999999999999999997653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.55  E-value=0.0014  Score=49.41  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.++.|+|..|+|||||++.+....
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.55  E-value=0.0013  Score=51.59  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|+|..|+|||||.+.+..-
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999853

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.52  E-value=0.0015  Score=50.49  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...++.+.|.||+|||||+..+.....
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            357888999999999999999986544

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.51  E-value=0.0025  Score=53.57  Aligned_cols=28  Identities=21%  Similarity=0.255  Sum_probs=24.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ..++|.++|.+|+||||++-.+-.....
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~  126 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE  126 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999998876543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.50  E-value=0.0021  Score=49.55  Aligned_cols=27  Identities=15%  Similarity=0.026  Sum_probs=23.6

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....+|.|.|+.|+||||+|+.+.+..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0032  Score=52.89  Aligned_cols=48  Identities=21%  Similarity=0.369  Sum_probs=37.8

Q ss_pred             CccccchHHHHHHHHHhh----cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSL----SN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L----~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.++.|.+..++.|.+.+    ..         ...+-|-++|++|.|||+||+.+.+...
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            355788988888877654    22         2367889999999999999999998765

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.50  E-value=0.0017  Score=52.46  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=23.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+|+|.+|+||||++..+.....
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999876543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.50  E-value=0.0035  Score=50.22  Aligned_cols=52  Identities=19%  Similarity=0.224  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhhcCC---CccEEEEEcCCCCcHHHHHHHHHHHhc-cCCCCceEEEEEc
Q 046665          140 KSTLKEILGSLSNH---NFNMIGVYGMGGIGKTMLVKEVAGQAK-GNNLFEKVISAQV  193 (204)
Q Consensus       140 ~~~~~~l~~~L~~~---~~~vI~IvG~gGiGKTTLa~~v~~~~~-~~~~F~~~~wv~v  193 (204)
                      ......+.+++...   ...-+-++|..|+|||+||+.+.+... .+ .+ .++++++
T Consensus       134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~  189 (308)
T 2qgz_A          134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHF  189 (308)
T ss_dssp             HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred             HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEH
Confidence            34455555666532   256788999999999999999998755 32 12 3445554

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.49  E-value=0.0014  Score=52.09  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568999999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.48  E-value=0.00093  Score=51.09  Aligned_cols=25  Identities=20%  Similarity=0.122  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+|+|.|..|+|||||++.+...
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4569999999999999999999875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.47  E-value=0.0038  Score=52.53  Aligned_cols=28  Identities=25%  Similarity=0.311  Sum_probs=24.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ...||.++|.+|+||||++..+......
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999998876553

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.47  E-value=0.0011  Score=53.21  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||++.+..
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHc
Confidence            457899999999999999999975

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.44  E-value=0.0047  Score=52.52  Aligned_cols=47  Identities=28%  Similarity=0.360  Sum_probs=34.3

Q ss_pred             ccccchHHHHHHHHHh---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGS---LSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..++++.+.   +.+.         -.+-|.++|+.|+||||||+.+.+...
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4578888766665554   3221         134588999999999999999998764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.43  E-value=0.0049  Score=50.07  Aligned_cols=49  Identities=18%  Similarity=0.158  Sum_probs=37.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i  202 (204)
                      .-.++-|+|..|+|||||+.++..+.....    .=..++|++....|+.+.+
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l  173 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL  173 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence            346899999999999999999987633211    1246899999888876654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.43  E-value=0.0038  Score=47.76  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCce
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEK  187 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~  187 (204)
                      ....|.|.|+.|+||||+++.+.+....  .++.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~   56 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV   56 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc
Confidence            4568999999999999999999988764  3544

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.43  E-value=0.0018  Score=53.25  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcC
Confidence            4568999999999999999999863

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.41  E-value=0.0052  Score=49.47  Aligned_cols=48  Identities=21%  Similarity=0.187  Sum_probs=36.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCC----CceEEEEEcCCCCChHhh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNL----FEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i  202 (204)
                      -.++-|+|..|+|||||+.++..+......    =..++|++...+|+.+.+
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l  158 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERI  158 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence            468999999999999999999876432110    246899999888776654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.40  E-value=0.0019  Score=50.78  Aligned_cols=44  Identities=27%  Similarity=0.310  Sum_probs=30.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCC--------CceEEEEEcCCCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNL--------FEKVISAQVSQTP  197 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~--------F~~~~wv~vs~~~  197 (204)
                      .-.++.|+|.+|+|||||+.++.........        -..+++++...+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~   80 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP   80 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence            3569999999999999999999865432110        1246677665543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.40  E-value=0.0018  Score=47.29  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.++|.+|+|||||+..+.+..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358899999999999999998763

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.40  E-value=0.0042  Score=49.81  Aligned_cols=50  Identities=16%  Similarity=0.156  Sum_probs=37.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCC---------CC-----ceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN---------LF-----EKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~iq  203 (204)
                      .-.++-|+|..|+||||||.++.-+.....         ..     ..++|++...+|+.+.+.
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~  160 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM  160 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH
Confidence            346899999999999999999987532110         11     468999999888776553

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.39  E-value=0.0021  Score=51.27  Aligned_cols=27  Identities=30%  Similarity=0.284  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|+++|.+|+||||++..+.....
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357999999999999999999987654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.38  E-value=0.0027  Score=48.58  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...+|+|+|+.|+||||+++.+...
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.37  E-value=0.0021  Score=47.84  Aligned_cols=32  Identities=25%  Similarity=0.184  Sum_probs=21.8

Q ss_pred             HhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          148 GSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       148 ~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ++....+.--|.|+|..|+|||||...+.++.
T Consensus        23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~   54 (204)
T 4gzl_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA   54 (204)
T ss_dssp             -------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence            33334455678999999999999999988753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.37  E-value=0.002  Score=52.86  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|+.|+|||||.+.|.--
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            4468999999999999999999863

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.37  E-value=0.0022  Score=46.91  Aligned_cols=23  Identities=35%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      --|.|+|.+|+|||||++.+.+.
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHhh
Confidence            45889999999999999888764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.36  E-value=0.0092  Score=50.36  Aligned_cols=44  Identities=16%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      +....+..+..++.+++ +.+-|.|.+|.||||++..+.......
T Consensus        29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            34445566666666544 389999999999999999999876543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.36  E-value=0.0028  Score=48.38  Aligned_cols=26  Identities=19%  Similarity=0.040  Sum_probs=22.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...|.|.|+.|+||||+|+.+.+...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999987654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.36  E-value=0.0036  Score=54.75  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=36.1

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.+...+..+  ..+.|+|..|+||||||+.+..-.
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l   84 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL   84 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred             ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence            45688888877777766654  589999999999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.36  E-value=0.0043  Score=53.64  Aligned_cols=46  Identities=24%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             cccchHHHHHHHHHhhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSLS------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++|.+...+.+.+.+.      +....++.++|..|+||||||+.+.....
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46787777666655432      22456899999999999999999998753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.35  E-value=0.0057  Score=50.86  Aligned_cols=48  Identities=15%  Similarity=0.071  Sum_probs=34.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHhh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i  202 (204)
                      -.++.|+|..|+|||||+.++.-.....    ..-..++|+.-...++...+
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl  229 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL  229 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH
Confidence            4699999999999999999876432211    12345888887777665443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.002  Score=47.16  Aligned_cols=26  Identities=23%  Similarity=0.171  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....|.|+|..|+|||||...+.+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44579999999999999999998753

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.34  E-value=0.0032  Score=52.89  Aligned_cols=27  Identities=30%  Similarity=0.187  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.++|.+|+||||++..+.....
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999886654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.34  E-value=0.0021  Score=52.56  Aligned_cols=25  Identities=36%  Similarity=0.647  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+.--
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999853

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.32  E-value=0.0039  Score=45.47  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+.+ +.....--|.|+|..|+|||||.+.+.+.
T Consensus         6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A            6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            34555 44556678999999999999999999854

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.32  E-value=0.0031  Score=45.63  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .++.+.+.. ...--|.|+|..|+|||||...+.+.
T Consensus         6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A            6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            344454544 56678899999999999999998743

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.31  E-value=0.0027  Score=46.31  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ..+.+|+|..|+|||||+..|+-
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            34889999999999999999975

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.30  E-value=0.0051  Score=50.21  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=33.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI  199 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  199 (204)
                      .-.++.|+|.+|+|||||+.++.......  =..++|++...+++.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~  103 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDP  103 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCH
Confidence            35689999999999999999998654322  134788888776654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0057  Score=50.81  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .++.|.+..++.|.+.+.    .         ...+=|-++|++|.|||+||+.|.+....
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~  208 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC  208 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence            557788888777766542    1         23567889999999999999999987653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.28  E-value=0.0024  Score=50.53  Aligned_cols=39  Identities=28%  Similarity=0.152  Sum_probs=28.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQV  193 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v  193 (204)
                      .-.+++|+|..|+|||||++.+......... ..++|++.
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~   72 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAML   72 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEES
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeC
Confidence            3468999999999999999999877543210 13556654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.28  E-value=0.0024  Score=52.36  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+.--
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCC
Confidence            4568999999999999999999853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.27  E-value=0.0043  Score=51.92  Aligned_cols=29  Identities=21%  Similarity=0.170  Sum_probs=24.8

Q ss_pred             cCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          151 SNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       151 ~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....-.+|+|+|..|+|||||.+.+....
T Consensus       163 ~~~~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            34566799999999999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.26  E-value=0.0025  Score=52.34  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+.--
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            4568999999999999999999853

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.25  E-value=0.0025  Score=53.21  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....+|.|+|+.|+||||+|+.+....
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            357899999999999999999998653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.25  E-value=0.0025  Score=52.48  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.|..-
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcC
Confidence            3468999999999999999999853

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.25  E-value=0.0021  Score=51.37  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~  178 (204)
                      |+|+|..|+|||||.+.++..
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            499999999999999998753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.24  E-value=0.004  Score=53.30  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.|+|.+|+|||||+..+-....
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999986543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.23  E-value=0.0026  Score=52.51  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.|.--
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcC
Confidence            4468999999999999999999853

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.23  E-value=0.0025  Score=52.19  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...++|+|..|+|||||++.+..-.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.22  E-value=0.0036  Score=51.23  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=22.3

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..-.+|+|+|..|+|||||.+.+..-
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            34459999999999999999998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.22  E-value=0.0027  Score=52.32  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            4568999999999999999999853

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.22  E-value=0.0042  Score=45.23  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=22.5

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ....-|.|+|.+|+|||||.+.+.+.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            35567899999999999999999865

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.21  E-value=0.0041  Score=52.35  Aligned_cols=47  Identities=23%  Similarity=0.280  Sum_probs=35.6

Q ss_pred             ccccchHHHHHHHHHhhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN--------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.|...+..              ...+-|-++|+.|+||||||+.+.....
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4578888877777655521              1345688999999999999999998764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.21  E-value=0.0029  Score=51.64  Aligned_cols=28  Identities=25%  Similarity=0.411  Sum_probs=24.8

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..-.+++|+|..|+|||||.+.+.+...
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4567999999999999999999999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.20  E-value=0.0044  Score=45.92  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=23.8

Q ss_pred             HHHhh-cCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          146 ILGSL-SNHNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       146 l~~~L-~~~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +++.+ ......-|.++|.+|+|||||.+.+.+
T Consensus        15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            44444 233344689999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.19  E-value=0.003  Score=52.11  Aligned_cols=27  Identities=19%  Similarity=0.007  Sum_probs=23.7

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....+|+|+|+.|+|||||++.+....
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            456799999999999999999999754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.19  E-value=0.0021  Score=54.01  Aligned_cols=26  Identities=31%  Similarity=0.371  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+|.|+|.+|+||||++..+-...
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999887754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.19  E-value=0.0028  Score=46.42  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|.+|+|||||+..+.+..
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999998877653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.18  E-value=0.0029  Score=45.44  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.+..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568999999999999999998764

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.0076  Score=50.91  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=37.1

Q ss_pred             ccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..++.|.+.+.    .         ...+-|-++|+.|.|||+||+.|.+...
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            457788888888776542    1         2467788999999999999999998765

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.17  E-value=0.0071  Score=49.49  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=32.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI  199 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  199 (204)
                      -.++.|+|..|+|||||+.++........  ..++|+.....++.
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~  103 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDP  103 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccch
Confidence            46999999999999999999997754221  24678877766653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.16  E-value=0.0022  Score=52.42  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+.--
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcC
Confidence            4468999999999999999999853

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.15  E-value=0.0031  Score=45.71  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.+..
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468999999999999999999753

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.14  E-value=0.007  Score=49.51  Aligned_cols=44  Identities=18%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI  199 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  199 (204)
                      .-.++-|.|.+|+||||||.++........  ..++|++....++.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~  105 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDP  105 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccH
Confidence            346899999999999999999887644221  35889988777654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.14  E-value=0.0019  Score=52.86  Aligned_cols=25  Identities=36%  Similarity=0.596  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+.--
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999853

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.14  E-value=0.0031  Score=46.25  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|.+|+|||||++.+.++.
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCC
Confidence            3468899999999999999888753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.12  E-value=0.0031  Score=46.40  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..-|.++|.+|+|||||.+.+.++
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            447899999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.10  E-value=0.0035  Score=51.59  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=22.8

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..-.+++|+|..|+|||||++.+..-
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45678999999999999999999864

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.09  E-value=0.0018  Score=48.23  Aligned_cols=26  Identities=15%  Similarity=0.182  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .....|+|+|..|+|||||.+.+...
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34567999999999999999988753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.09  E-value=0.0034  Score=45.38  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.++.
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Confidence            3468899999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.08  E-value=0.0037  Score=45.75  Aligned_cols=25  Identities=16%  Similarity=0.419  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +...|.|+|..|+|||||...+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999865

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.08  E-value=0.0043  Score=46.41  Aligned_cols=26  Identities=23%  Similarity=0.171  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....|.|+|..|+|||||+..+.+..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678999999999999999998764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.08  E-value=0.0045  Score=51.68  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ...+++|+|..|+|||||.+.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            566999999999999999999997

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.08  E-value=0.0088  Score=51.15  Aligned_cols=48  Identities=29%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             CccccchHHHHHHHHHh---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGS---LSNH---------NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~---L~~~---------~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.++.|.+..+..+.+.   +.+.         -.+-+.|+|..|+||||||+.|.+...
T Consensus        30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            35678888766555543   3221         123389999999999999999998654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.07  E-value=0.0039  Score=45.65  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.++.
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            3468899999999999999998764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.07  E-value=0.007  Score=45.70  Aligned_cols=39  Identities=15%  Similarity=0.096  Sum_probs=28.9

Q ss_pred             HHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          142 TLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       142 ~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -...+..++.+ ..-+.+-|+|++|.||||+|..+.+...
T Consensus        44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35555666543 2235799999999999999999988754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.07  E-value=0.0034  Score=45.01  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|..|+|||||.+.+.++.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358899999999999999998653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.07  E-value=0.0029  Score=46.17  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....|.|+|..|+|||||...+.+..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            34578999999999999999998764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.07  E-value=0.0029  Score=51.88  Aligned_cols=25  Identities=36%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3468999999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.07  E-value=0.0035  Score=45.93  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.+..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.07  E-value=0.0035  Score=46.28  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..--|.|+|..|+|||||...+.++.
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence            34568999999999999999998654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.06  E-value=0.0035  Score=45.16  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|..|+|||||.+.+.++.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468899999999999999998763

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.05  E-value=0.0036  Score=45.53  Aligned_cols=25  Identities=20%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||++.+.+..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.0033  Score=53.25  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4568999999999999999999874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.01  E-value=0.0038  Score=45.97  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..--|.|+|..|+|||||++.+.+.
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999875

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.01  E-value=0.003  Score=50.38  Aligned_cols=26  Identities=31%  Similarity=0.258  Sum_probs=22.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+|+++|.+|+||||++..+.....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67999999999999999999886654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.01  E-value=0.0038  Score=51.72  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||.+.|..
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            456899999999999999999985

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.011  Score=49.42  Aligned_cols=48  Identities=31%  Similarity=0.443  Sum_probs=37.1

Q ss_pred             CccccchHHHHHHHHHhhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLS----N---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.++.|.+..++.|.+.+.    .         ...+=|-++|+.|.|||+||+.|.+...
T Consensus       181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~  241 (437)
T 4b4t_I          181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS  241 (437)
T ss_dssp             GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred             ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence            3557788887777766542    2         2357799999999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.00  E-value=0.0035  Score=46.25  Aligned_cols=24  Identities=25%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .--|.|+|.+|+|||||.+.+.+.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            456899999999999999987763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.99  E-value=0.0047  Score=50.13  Aligned_cols=26  Identities=19%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ....+++|+|..|+|||||.+.+..-
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            56789999999999999999999854

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.99  E-value=0.0038  Score=45.84  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.++.
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.99  E-value=0.0031  Score=46.70  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      ..--|.|+|.+|+|||||.+.+.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            34578999999999999999984

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.97  E-value=0.005  Score=50.17  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +..+|+|+|..|+|||||.+.+...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            4679999999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.97  E-value=0.004  Score=46.53  Aligned_cols=25  Identities=32%  Similarity=0.232  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||++.+.++.
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            4568999999999999999998753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.96  E-value=0.005  Score=46.87  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=27.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      -.++.|.|.+|+|||||+.++.......  =..++|++...
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~   61 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE   61 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence            4689999999999999988776543211  12466766544

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.95  E-value=0.0043  Score=45.39  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.++.
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4468999999999999999999754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.94  E-value=0.0042  Score=50.42  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...+|.|+|+.|+|||||+..+...
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.94  E-value=0.0046  Score=45.73  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..--|.|+|..|+|||||++.+.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34568999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.93  E-value=0.0044  Score=45.33  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|..|+|||||.+.+.+..
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCC
Confidence            458899999999999999998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.93  E-value=0.0042  Score=53.65  Aligned_cols=25  Identities=48%  Similarity=0.703  Sum_probs=22.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.+++|+|..|+|||||++.++.-.
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4689999999999999999999753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.92  E-value=0.0044  Score=45.44  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.+..
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468899999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.92  E-value=0.0043  Score=46.21  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .--|.|+|..|+|||||++.+.+.
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999998865

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.91  E-value=0.0045  Score=45.19  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.++.
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            3468999999999999999998764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.91  E-value=0.0038  Score=52.29  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ++|+|..|+|||||.+.++.-
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            999999999999999999864

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.91  E-value=0.0068  Score=48.94  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -+++-|+|++|+||||||.++...
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            356789999999999999999876

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.90  E-value=0.005  Score=45.31  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=22.7

Q ss_pred             hcCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          150 LSNHNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +.....--|.|+|.+|+|||||.+.+.+
T Consensus        24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           24 IFGKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             hccCCccEEEEECCCCCCHHHHHHHHHh
Confidence            3344556699999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.90  E-value=0.0046  Score=45.28  Aligned_cols=24  Identities=21%  Similarity=0.312  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|..|+|||||.+.+.+..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            358899999999999999998753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.89  E-value=0.005  Score=49.99  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          152 NHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .....+|+|+|.+|+|||||+..+...
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            356789999999999999999998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.87  E-value=0.0048  Score=45.07  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.++.
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568999999999999999998653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.86  E-value=0.0049  Score=44.98  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|..|+|||||.+.+.+..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.86  E-value=0.0043  Score=45.73  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.+..
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            4468899999999999999998653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.86  E-value=0.0047  Score=53.36  Aligned_cols=25  Identities=40%  Similarity=0.591  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.--
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.84  E-value=0.0053  Score=49.01  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=25.8

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +++|.+.+.   -.+++++|..|+|||||.+.+. ..
T Consensus       156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            345555553   3589999999999999999998 53

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.84  E-value=0.0043  Score=45.92  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .--|.|+|..|+|||||.+.+.++
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            446889999999999999999754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.84  E-value=0.0049  Score=45.47  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..--|.|+|..|+|||||.+.+.++
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            4567899999999999999999865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.83  E-value=0.0072  Score=50.64  Aligned_cols=28  Identities=32%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ...+|.++|.+|+||||++..+......
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~  124 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3579999999999999999999877653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.83  E-value=0.0036  Score=50.67  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.+++|+|..|+|||||++.+..-.
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999998753

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.82  E-value=0.013  Score=48.47  Aligned_cols=53  Identities=19%  Similarity=0.093  Sum_probs=36.7

Q ss_pred             HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccC-CCCceEEEEEcCCCC
Q 046665          144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN-NLFEKVISAQVSQTP  197 (204)
Q Consensus       144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~-~~F~~~~wv~vs~~~  197 (204)
                      -++++.+.. ..-..++|+|..|+|||||++.+-+....+ ..+.|+ .+-+.+..
T Consensus       162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I-~~lIGER~  216 (422)
T 3ice_A          162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM-VLLIDERP  216 (422)
T ss_dssp             HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEE-EEEESSCH
T ss_pred             ceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEE-EEEecCCh
Confidence            455666654 456799999999999999999998764322 235544 57676554

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.81  E-value=0.0054  Score=51.59  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=24.5

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..-.+++|+|..|+|||||++.+.+...
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4567999999999999999999998754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.80  E-value=0.0038  Score=54.05  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-.+|.|+|+.|+|||||++.+.....
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhc
Confidence            457899999999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.80  E-value=0.0049  Score=47.09  Aligned_cols=26  Identities=23%  Similarity=0.277  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...-|+|+|..|+|||||.+.+....
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            45678999999999999999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.80  E-value=0.0055  Score=50.17  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|+|..|+|||||.+.+.....
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            5899999999999999999986543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.79  E-value=0.0047  Score=44.89  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=22.7

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...--|.|+|..|+|||||.+.+.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            455678999999999999999998654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.78  E-value=0.021  Score=51.26  Aligned_cols=46  Identities=15%  Similarity=0.236  Sum_probs=36.5

Q ss_pred             ccccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.+...+..         .....+-++|..|+|||+||+.+.+..
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578998888887777642         123379999999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.78  E-value=0.0049  Score=53.21  Aligned_cols=25  Identities=44%  Similarity=0.801  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4469999999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.78  E-value=0.0044  Score=53.53  Aligned_cols=24  Identities=38%  Similarity=0.710  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|+|..|+|||||++.+..-
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999964

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0053  Score=45.65  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-|.|+|..|+|||||...+.++.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999998753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.78  E-value=0.0054  Score=44.93  Aligned_cols=24  Identities=38%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|..|+|||||.+.+.+..
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.77  E-value=0.0053  Score=53.79  Aligned_cols=24  Identities=50%  Similarity=0.732  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|+|..|+|||||++.+..-
T Consensus       382 Gei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          382 GEVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999974

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.75  E-value=0.0049  Score=46.21  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            346899999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.73  E-value=0.0048  Score=44.78  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      --|.|+|..|+|||||.+.+.+.
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999864

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.71  E-value=0.021  Score=45.66  Aligned_cols=63  Identities=13%  Similarity=0.006  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc-cC-CCCceEEEEEcCC-CCChHhh
Q 046665          139 RKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK-GN-NLFEKVISAQVSQ-TPQIKKI  202 (204)
Q Consensus       139 ~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~-~~-~~F~~~~wv~vs~-~~~~~~i  202 (204)
                      .+...+.|.+.+.++.....-++|+.|.||||+|+.+-+... .. .|.+ ..++..+. ...++.|
T Consensus         2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i   67 (305)
T 2gno_A            2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI   67 (305)
T ss_dssp             --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH
T ss_pred             hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH
Confidence            344556677777766677889999999999999999977522 11 2334 35555443 4544433

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.71  E-value=0.006  Score=51.91  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+++|+|..|+|||||.+.+..-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            89999999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.71  E-value=0.014  Score=46.72  Aligned_cols=40  Identities=18%  Similarity=0.176  Sum_probs=31.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      .-.++-|.|.+|+||||||.++..+...+.  ..++|++.-.
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~  106 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM  106 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC
Confidence            346889999999999999999987655432  5688887653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.70  E-value=0.006  Score=45.23  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .--|.|+|..|+|||||++.+.+.
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhC
Confidence            456899999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.70  E-value=0.0061  Score=45.23  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||...+....
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            4568999999999999999998653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.70  E-value=0.006  Score=45.12  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|..|+|||||.+.+.++.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.0059  Score=53.48  Aligned_cols=23  Identities=39%  Similarity=0.654  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+++|+|..|+|||||++.+.--
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcC
Confidence            57999999999999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.66  E-value=0.0064  Score=45.61  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|.+|+|||||.+.+.++.
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            458899999999999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.64  E-value=0.0064  Score=44.52  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...-|.|+|..|+|||||...+.+.
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4567999999999999999999865

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.63  E-value=0.015  Score=47.67  Aligned_cols=43  Identities=19%  Similarity=0.139  Sum_probs=33.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI  199 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  199 (204)
                      -.++-|.|.+|+||||||.++.......  =..++|++...+++.
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~  116 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDP  116 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhH
Confidence            4588889999999999999887764322  135889988877654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.0065  Score=53.25  Aligned_cols=25  Identities=36%  Similarity=0.632  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            4569999999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.61  E-value=0.0041  Score=48.35  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....|.|.|.-|+||||+++.+.+..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            46799999999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.60  E-value=0.007  Score=48.23  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=25.7

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ++++..++.   -.+++|+|..|+|||||.+.+...
T Consensus       160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhccc
Confidence            344555553   358999999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.58  E-value=0.007  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|.|+|..|+|||||.+.+.++.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC--
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358899999999999999998653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.56  E-value=0.0053  Score=51.33  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      |+|+|..|+|||||++.++...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999998653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.55  E-value=0.0074  Score=45.67  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...-|.|+|..|+|||||+..+.+.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.55  E-value=0.0068  Score=53.13  Aligned_cols=25  Identities=44%  Similarity=0.622  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+.--
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            3468999999999999999999864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.55  E-value=0.015  Score=44.68  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=28.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEE
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISA  191 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv  191 (204)
                      ...|.|.|..|+||||+++.+.+..... .+.+.+..
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~   62 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT   62 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence            4689999999999999999999887643 45644443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.54  E-value=0.0044  Score=45.32  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||.+.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999998765

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=95.52  E-value=0.0092  Score=48.66  Aligned_cols=31  Identities=35%  Similarity=0.424  Sum_probs=24.7

Q ss_pred             hcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.+...+++.+.|.||+||||+|-.+-....
T Consensus        13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la   43 (348)
T 3io3_A           13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA   43 (348)
T ss_dssp             HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence            3345678999999999999999988875543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.50  E-value=0.0073  Score=52.60  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.49  E-value=0.0082  Score=45.26  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .--|.|+|.+|+|||||...+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.49  E-value=0.0072  Score=52.63  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            4568999999999999999999864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.49  E-value=0.02  Score=51.35  Aligned_cols=46  Identities=11%  Similarity=0.183  Sum_probs=35.6

Q ss_pred             ccccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.+...+..         .....+-++|..|+|||+||+.+.+..
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            3467888887777776531         123478999999999999999999876

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.49  E-value=0.012  Score=44.18  Aligned_cols=26  Identities=12%  Similarity=0.119  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+|+|+||.|+||+|.|..+-+..
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHc
Confidence            45699999999999999999887743

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.48  E-value=0.011  Score=50.90  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=23.7

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+|-++|+.|+||||+|+.+.....
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3457899999999999999999976653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.47  E-value=0.0066  Score=45.35  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            346899999999999999998864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.47  E-value=0.0075  Score=46.64  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...-|+|+|..|+|||||...+....
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCC
Confidence            34679999999999999999998653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.47  E-value=0.0099  Score=42.27  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ..+..|+|..|.|||||...++-
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999874

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.46  E-value=0.023  Score=45.79  Aligned_cols=45  Identities=4%  Similarity=-0.192  Sum_probs=33.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIK  200 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~  200 (204)
                      .++-|.|..|+|||||+-++.....-+..=..++||+--.+++..
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~   73 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA   73 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH
Confidence            378999999999999988887664321112468999888877643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.45  E-value=0.0038  Score=50.09  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.+++|+|..|+|||||.+.+...
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHhccc
Confidence            358999999999999999999753

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.44  E-value=0.019  Score=49.23  Aligned_cols=28  Identities=7%  Similarity=-0.180  Sum_probs=24.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      +..+|-+.|+.|+||||+|+.+......
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            5578999999999999999999998763

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.38  E-value=0.011  Score=50.17  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=23.6

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+|.++|+.|+||||+++.+.+...
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3456899999999999999999987654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.36  E-value=0.012  Score=44.95  Aligned_cols=29  Identities=24%  Similarity=0.196  Sum_probs=25.1

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .....|.|.|..|+||||+++.+.+....
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35678999999999999999999987654

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.35  E-value=0.0095  Score=45.12  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -|.|+|-+|+|||+|+..+.++
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            3678999999999999988764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.33  E-value=0.0095  Score=44.82  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|.|+|..|+|||||...+.+..
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            4468999999999999999998753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.29  E-value=0.003  Score=46.84  Aligned_cols=29  Identities=24%  Similarity=0.195  Sum_probs=22.7

Q ss_pred             hcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +.+.+.--|.|+|..|+|||||...+.++
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            33445556899999999999999887754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.29  E-value=0.011  Score=53.70  Aligned_cols=45  Identities=18%  Similarity=0.325  Sum_probs=35.4

Q ss_pred             cccchHHHHHHHHHhhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          135 HFESRKSTLKEILGSLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++|.+..+..+...+..         .....+-++|..|+|||+||+.+.+..
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            468888887777776532         123588999999999999999999875

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=95.28  E-value=0.012  Score=48.38  Aligned_cols=27  Identities=15%  Similarity=0.242  Sum_probs=22.4

Q ss_pred             CCccEEEEEc-CCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYG-MGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG-~gGiGKTTLa~~v~~~~  179 (204)
                      .+.++|+|+| .||+||||+|-.+-...
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~L  168 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAH  168 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHH
Confidence            3578999995 99999999998877653

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.28  E-value=0.0092  Score=45.69  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      -..|.|.|+.|+||||+++.+.+....
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.26  E-value=0.024  Score=47.49  Aligned_cols=43  Identities=16%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             cchHHHHHHHHHhhcC-----------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          137 ESRKSTLKEILGSLSN-----------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~-----------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .|.++.++.|...+.+           +..--|+|+|..|+|||||.+.+....
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            3666667777666531           123579999999999999999998754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.21  E-value=0.0076  Score=43.88  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ...--|.|+|..|+|||||...+.+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc
Confidence            4455799999999999999999864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.20  E-value=0.016  Score=52.31  Aligned_cols=46  Identities=24%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             cccchHHHHHHHHHhh----cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSL----SN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L----~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ++.|.+..++.|.+++    ..         ..++-|-++|+.|.|||+||+.|.+...
T Consensus       205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred             hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567666555555443    22         1356799999999999999999998654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.19  E-value=0.01  Score=50.92  Aligned_cols=22  Identities=27%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEV  175 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v  175 (204)
                      .-.+++|+|..|+|||||++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            4579999999999999999995

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.19  E-value=0.0083  Score=52.43  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4579999999999999999999853

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.17  E-value=0.011  Score=48.55  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +..+|+|+|..|+|||||.+.+.+..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            46779999999999999999998653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.17  E-value=0.0088  Score=44.78  Aligned_cols=26  Identities=19%  Similarity=0.208  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +...|.|+|..|+|||||...+.+..
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            45678999999999999999998764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.17  E-value=0.031  Score=45.03  Aligned_cols=43  Identities=9%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             chHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          138 SRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+.....+.+.+..+. ...+-++|..|+||||+|+.+-+...
T Consensus         6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A            6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence            34566777777777665 45799999999999999999987643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.15  E-value=0.0082  Score=49.15  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -|+|+|..|+|||||++.++..
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4699999999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.14  E-value=0.0045  Score=45.66  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=4.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      --|.|+|..|+|||||...+.++
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999988766

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.14  E-value=0.0064  Score=45.63  Aligned_cols=21  Identities=38%  Similarity=0.468  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      --|.|+|..|+|||||.+.+.
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~   36 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHL   36 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999944

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=95.13  E-value=0.01  Score=51.85  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -|-++|..|+|||+||+.+.+.
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~  350 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRV  350 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTT
T ss_pred             ceEEECCCchHHHHHHHHHHHh
Confidence            4889999999999999999875

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=95.09  E-value=0.012  Score=45.54  Aligned_cols=29  Identities=24%  Similarity=0.268  Sum_probs=23.0

Q ss_pred             CCCccEEEEE-cCCCCcHHHHHHHHHHHhc
Q 046665          152 NHNFNMIGVY-GMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       152 ~~~~~vI~Iv-G~gGiGKTTLa~~v~~~~~  180 (204)
                      ....++|+|+ |-||+||||+|-.+-.-..
T Consensus        24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la   53 (267)
T 3k9g_A           24 NKKPKIITIASIKGGVGKSTSAIILATLLS   53 (267)
T ss_dssp             --CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence            3467899997 6888999999999887665

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.08  E-value=0.017  Score=50.30  Aligned_cols=27  Identities=15%  Similarity=0.059  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.|.|+.|+||||+|+.+-+...
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            457899999999999999999987654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.08  E-value=0.01  Score=50.85  Aligned_cols=25  Identities=20%  Similarity=0.001  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...|+|+|..|+|||||++.+..-.
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3459999999999999999998643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.06  E-value=0.028  Score=44.08  Aligned_cols=37  Identities=19%  Similarity=0.378  Sum_probs=27.5

Q ss_pred             HHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          143 LKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       143 ~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++.+.|..      ....-|+|+|..|+|||||...+....
T Consensus         8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B            8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence            4455555532      235589999999999999999998653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.03  E-value=0.013  Score=44.00  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -+.|.|.|..|+||||||..+...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            467899999999999999999764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.02  E-value=0.0072  Score=52.60  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            4579999999999999999998753

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.99  E-value=0.037  Score=45.83  Aligned_cols=53  Identities=17%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccC-CCCceEEEEEcCCCC
Q 046665          144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN-NLFEKVISAQVSQTP  197 (204)
Q Consensus       144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~-~~F~~~~wv~vs~~~  197 (204)
                      -++++.|.. ..-+-++|+|..|+|||||++.|.+....+ ..+.| +++-+.+.+
T Consensus       163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~  217 (427)
T 3l0o_A          163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERP  217 (427)
T ss_dssp             HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCH
T ss_pred             chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCc
Confidence            466777765 456789999999999999999998875432 23554 567777654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.97  E-value=0.016  Score=48.09  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-..++|+|..|+|||||.+.+...
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3468999999999999999999984

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.96  E-value=0.025  Score=43.92  Aligned_cols=26  Identities=35%  Similarity=0.564  Sum_probs=22.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-.|+|+|..|+|||||...+....
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45678999999999999999998754

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.96  E-value=0.033  Score=47.17  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=30.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      -+.++|+|..|+|||||++.+.++.... +-+.++++-+.+..
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGert  192 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERT  192 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCc
Confidence            3468999999999999999998875532 12455677666543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.95  E-value=0.018  Score=50.52  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ...+|.+.|+.|+||||+|+.+-+..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998865

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=94.93  E-value=0.013  Score=46.23  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=21.8

Q ss_pred             CccEEEEEc---CCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYG---MGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG---~gGiGKTTLa~~v~~~~~  180 (204)
                      +.++|+|++   .||+||||+|-.+-.-..
T Consensus        33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la   62 (298)
T 2oze_A           33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTD   62 (298)
T ss_dssp             HCSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeccCCCCchHHHHHHHHHHHHH
Confidence            456788886   999999999998886543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.92  E-value=0.017  Score=46.99  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +...|+++|..|+|||||.+.+...
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.89  E-value=0.0099  Score=51.83  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999753

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=94.89  E-value=0.038  Score=43.31  Aligned_cols=37  Identities=24%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             HHHHHHHhhcCC--CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          142 TLKEILGSLSNH--NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       142 ~~~~l~~~L~~~--~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -..-+..||...  ..+-|-++|++|.|||+||..+.+.
T Consensus        89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            445577777653  3567999999999999999999875

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=94.88  E-value=0.018  Score=46.67  Aligned_cols=31  Identities=35%  Similarity=0.381  Sum_probs=24.4

Q ss_pred             hcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          150 LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       150 L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      +.+...+++-+.|.||+||||+|-.+-....
T Consensus        11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la   41 (334)
T 3iqw_A           11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA   41 (334)
T ss_dssp             HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence            3445577888889999999999998876543

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=94.85  E-value=0.029  Score=45.61  Aligned_cols=28  Identities=21%  Similarity=0.226  Sum_probs=20.4

Q ss_pred             CCCccEEEE-EcCCCCcHHHHHHHHHHHh
Q 046665          152 NHNFNMIGV-YGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       152 ~~~~~vI~I-vG~gGiGKTTLa~~v~~~~  179 (204)
                      +...++|.| .|.||+||||+|-.+-...
T Consensus        22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~l   50 (349)
T 3ug7_A           22 KKDGTKYIMFGGKGGVGKTTMSAATGVYL   50 (349)
T ss_dssp             SSCSCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEeCCCCccHHHHHHHHHHHH
Confidence            444555554 4999999999998886553

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.85  E-value=0.019  Score=47.04  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .++.+|+|..|.|||||...|+-
T Consensus        26 ~g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           26 EGVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHH
Confidence            34999999999999999999995

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.79  E-value=0.016  Score=45.21  Aligned_cols=26  Identities=38%  Similarity=0.574  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-.|.++|..|+|||||...+.+..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578999999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.79  E-value=0.017  Score=49.65  Aligned_cols=27  Identities=33%  Similarity=0.384  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-.+++|+|..|+|||||++.+.....
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            346999999999999999999987644

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.77  E-value=0.017  Score=53.26  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      -.+++|+|..|+|||||++.+..
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45799999999999999999985

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.74  E-value=0.016  Score=47.45  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEV  175 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v  175 (204)
                      ...-|-|+|.||+||||+++++
T Consensus        32 ~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CccEEEEECCCCCcHHHHHHHH
Confidence            4567889999999999999985

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=94.70  E-value=0.074  Score=45.07  Aligned_cols=52  Identities=23%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      +.++.|.. ..-+-++|+|..|+|||||++.+-++... .+-++++++-+.+..
T Consensus       142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~  194 (482)
T 2ck3_D          142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERT  194 (482)
T ss_dssp             HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCH
T ss_pred             EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcc
Confidence            34555544 35678999999999999999999887532 235778888888765

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=94.68  E-value=0.022  Score=46.08  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +.++..|+|..|.|||||...|+-
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            357889999999999999999864

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=94.68  E-value=0.017  Score=46.42  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .++-.-|.||+||||+|-.+-...
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~l   38 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWM   38 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Confidence            344455999999999998887553

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=94.64  E-value=0.026  Score=43.01  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...+|+|.|+.|+||||+++.+-..
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~   37 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEE   37 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            3569999999999999999998764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.61  E-value=0.021  Score=47.75  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+.+|+|..|.|||||...|+--
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            578999999999999999999853

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=94.61  E-value=0.035  Score=43.26  Aligned_cols=36  Identities=11%  Similarity=0.172  Sum_probs=26.5

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+.|.++|.+.- ..+.++|..|+|||||.+.+....
T Consensus        88 i~~L~~~l~~~~-~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A           88 KVLLKKLSFDRL-ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             HHHHHHHCCCTT-CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh-hheEEeCCCCCCHHHHHHHHhccc
Confidence            345555554211 578999999999999999998643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.56  E-value=0.024  Score=42.38  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ..+..|+|..|.||||+...|+-
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHH
Confidence            46889999999999999999874

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=94.56  E-value=0.014  Score=51.13  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+..|+|+|..|+|||||.+.+..-
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCC
Confidence            4567999999999999999999853

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.55  E-value=0.018  Score=46.18  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=20.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      .++.+|+|..|.|||||...++
T Consensus        24 ~g~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           24 DRVTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHH
Confidence            3489999999999999999999

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=94.54  E-value=0.022  Score=47.06  Aligned_cols=27  Identities=22%  Similarity=0.188  Sum_probs=22.4

Q ss_pred             CCccEEEEE-cCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVY-GMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~Iv-G~gGiGKTTLa~~v~~~~  179 (204)
                      ...++|+|+ |-||+||||+|-.+-.-.
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~L  133 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAM  133 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence            357899999 889999999998887654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.52  E-value=0.057  Score=46.66  Aligned_cols=27  Identities=15%  Similarity=0.126  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...+|.+.|+.|+||||+|+.+.....
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            457899999999999999999987643

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=94.50  E-value=0.022  Score=44.09  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             CccEEEEE-cCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVY-GMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~Iv-G~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|+|+ |.||+||||+|-.+-.-..
T Consensus        17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la   44 (262)
T 2ph1_A           17 IKSRIAVMSGKGGVGKSTVTALLAVHYA   44 (262)
T ss_dssp             CSCEEEEECSSSCTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence            45788887 6889999999998876543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=94.47  E-value=0.014  Score=48.68  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...|+|+|..|+|||||.+.+...
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            467999999999999999999865

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.46  E-value=0.026  Score=46.20  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      .++..|+|..|.|||||...|+
T Consensus        23 ~g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           23 SGITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3478899999999999999987

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.45  E-value=0.048  Score=45.61  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             cchHHHHHHHHHhhcC-------CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          137 ESRKSTLKEILGSLSN-------HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~-------~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .|.++.++.+.+.+.+       +...-|+|+|..|+|||||...+....
T Consensus       150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4677778888877742       244678999999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.44  E-value=0.014  Score=53.84  Aligned_cols=25  Identities=32%  Similarity=0.513  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus       698 ~GeivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          698 LSSRIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3468999999999999999999853

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.43  E-value=0.0035  Score=48.05  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +++|+|+.|+|||||.+.|.--.
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            55789999999999999998653

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=94.40  E-value=0.065  Score=45.60  Aligned_cols=51  Identities=22%  Similarity=0.330  Sum_probs=38.4

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      .++.|.. ..-+-++|.|-.|+|||+|++.+-++... .+-++++++-+.+..
T Consensus       155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~  206 (498)
T 1fx0_B          155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERT  206 (498)
T ss_dssp             THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCS
T ss_pred             EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCc
Confidence            3444443 35578999999999999999999887432 245788999888765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=94.29  E-value=0.02  Score=42.61  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .--|.|+|..|+|||||...+.+.
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            345889999999999999998854

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=94.23  E-value=0.011  Score=49.04  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .++++|+|..|.|||||.+.|+--
T Consensus        60 ~G~~~lvG~NGaGKStLl~aI~~l   83 (415)
T 4aby_A           60 GGFCAFTGETGAGKSIIVDALGLL   83 (415)
T ss_dssp             SSEEEEEESHHHHHHHHTHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            349999999999999999999643

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.21  E-value=0.035  Score=42.11  Aligned_cols=40  Identities=15%  Similarity=0.102  Sum_probs=26.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      -.++-|.|.+|+||||||.++..+...+ .-..+++++...
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~   69 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE   69 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC
Confidence            4688999999999999998865432111 112356666543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=94.08  E-value=0.033  Score=44.12  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ....|+|+|..|+|||||...+...
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            4668999999999999999999764

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=94.07  E-value=0.072  Score=46.00  Aligned_cols=50  Identities=16%  Similarity=0.187  Sum_probs=38.4

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCC
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQ  198 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~  198 (204)
                      ++++.|.. ..-+-++|.|..|+|||+|++.+-+...    -+.++++-+.+..+
T Consensus       216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~  266 (588)
T 3mfy_A          216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGN  266 (588)
T ss_dssp             HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSS
T ss_pred             chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHH
Confidence            34555554 3567899999999999999999977532    46888888887764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=94.03  E-value=0.03  Score=44.49  Aligned_cols=26  Identities=31%  Similarity=0.350  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..--|.|+|..|+|||||...+.++.
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~  179 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNA  179 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCC
Confidence            34568899999999999999988753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=93.97  E-value=0.06  Score=42.43  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-.|+++|..|+|||||...+....
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            34578999999999999999998653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.94  E-value=0.038  Score=46.50  Aligned_cols=40  Identities=20%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      -.++.|.|.+|+|||||+.++..+...... ..++|++...
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~  242 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM  242 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC
Confidence            468999999999999999999887543211 2477776543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=93.86  E-value=0.034  Score=49.96  Aligned_cols=23  Identities=17%  Similarity=0.301  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      -.+++|+|+.|.|||||.+.+.-
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHh
Confidence            46899999999999999999875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=93.85  E-value=0.019  Score=50.84  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      -.+++|+|..|+|||||++.+.
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHH
Confidence            4689999999999999997653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=93.84  E-value=0.026  Score=45.43  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.|.|+|..|+|||||+..+.+.
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~  188 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLG  188 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSS
T ss_pred             ceEEEECCCCccHHHHHHHHhCC
Confidence            36899999999999999988653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.80  E-value=0.037  Score=46.60  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ....|+|+|..|+|||||...+...
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3578999999999999999998653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=93.75  E-value=0.034  Score=46.05  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...|+|+|..|+|||||.+.+.+.
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            346899999999999999999865

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=93.74  E-value=0.075  Score=42.17  Aligned_cols=29  Identities=21%  Similarity=0.283  Sum_probs=23.7

Q ss_pred             CCCccEEEEEcC-CCCcHHHHHHHHHHHhc
Q 046665          152 NHNFNMIGVYGM-GGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       152 ~~~~~vI~IvG~-gGiGKTTLa~~v~~~~~  180 (204)
                      +...++|.|+|. ||+||||+|-.+-.-..
T Consensus       101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA  130 (299)
T 3cio_A          101 ETENNILMITGATPDSGKTFVSSTLAAVIA  130 (299)
T ss_dssp             SCSCCEEEEEESSSSSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCChHHHHHHHHHHHH
Confidence            456789999986 89999999988876543

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=93.71  E-value=0.051  Score=41.38  Aligned_cols=26  Identities=15%  Similarity=-0.208  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .-.++-|+|..|+||||++..+.+..
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            35688899999999999887777664

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=93.68  E-value=0.039  Score=49.90  Aligned_cols=24  Identities=21%  Similarity=0.181  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|+.|.|||||.+.+.-
T Consensus       606 ~g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          606 QRRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCChHHHHHHHHH
Confidence            457999999999999999999875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=93.64  E-value=0.031  Score=49.42  Aligned_cols=19  Identities=26%  Similarity=0.475  Sum_probs=17.1

Q ss_pred             CccEEEEEcCCCCcHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLV  172 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa  172 (204)
                      .-.+++|+|..|+|||||+
T Consensus        43 ~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           43 RGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTSEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHh
Confidence            4568999999999999996

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=93.62  E-value=0.021  Score=47.21  Aligned_cols=27  Identities=26%  Similarity=0.183  Sum_probs=14.7

Q ss_pred             CCccEEEEE-cCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVY-GMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~Iv-G~gGiGKTTLa~~v~~~~  179 (204)
                      ...++|+|+ |-||+||||++-.+-.-.
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~L  136 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHAL  136 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHH
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHH
Confidence            467899999 899999999888876654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=93.58  E-value=0.032  Score=52.99  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999863

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=93.54  E-value=0.038  Score=42.68  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=19.9

Q ss_pred             cEEEEEcCC---------CCcHHHHHHHHHH
Q 046665          156 NMIGVYGMG---------GIGKTMLVKEVAG  177 (204)
Q Consensus       156 ~vI~IvG~g---------GiGKTTLa~~v~~  177 (204)
                      --|.|+|.+         |+|||||.+.+.+
T Consensus        20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             EEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             eEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            458899999         9999999999987

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=93.50  E-value=0.055  Score=43.55  Aligned_cols=27  Identities=37%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ...++-+-|.||+||||+|-.+--...
T Consensus        18 ~~~i~v~sgkGGvGKTTva~~LA~~lA   44 (329)
T 2woo_A           18 SLKWIFVGGKGGVGKTTTSCSLAIQMS   44 (329)
T ss_dssp             TCCEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence            345555669999999999988876544

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=93.49  E-value=0.036  Score=47.63  Aligned_cols=24  Identities=33%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      --|+++|.+|+|||||.+.+.+..
T Consensus        42 ~kV~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           42 IKVHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             EEEEEESSSCSSHHHHHHHHHC--
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            468899999999999999998653

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=93.47  E-value=0.08  Score=41.38  Aligned_cols=29  Identities=17%  Similarity=0.207  Sum_probs=23.3

Q ss_pred             CCCccEEEEEcC-CCCcHHHHHHHHHHHhc
Q 046665          152 NHNFNMIGVYGM-GGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       152 ~~~~~vI~IvG~-gGiGKTTLa~~v~~~~~  180 (204)
                      +...++|.|+|. ||+||||+|-.+-.-..
T Consensus        79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA  108 (271)
T 3bfv_A           79 DSAVQSIVITSEAPGAGKSTIAANLAVAYA  108 (271)
T ss_dssp             TCCCCEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            456789999975 89999999988876543

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.45  E-value=0.054  Score=39.69  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-|.|.|..|+||||||..+...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46789999999999999988863

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=93.41  E-value=0.053  Score=44.18  Aligned_cols=28  Identities=32%  Similarity=0.253  Sum_probs=20.1

Q ss_pred             CCccEEE-EEcCCCCcHHHHHHHHHHHhc
Q 046665          153 HNFNMIG-VYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       153 ~~~~vI~-IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ++.++|. ..|.||+||||+|-.+--...
T Consensus        15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA   43 (354)
T 2woj_A           15 STTHKWIFVGGKGGVGKTTSSCSIAIQMA   43 (354)
T ss_dssp             CSSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence            3444454 459999999999988775544

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=93.36  E-value=0.12  Score=44.74  Aligned_cols=48  Identities=17%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      ++++.|.. ..-+-++|.|-.|+|||+|+..+-+...    -+.++++-+.+.
T Consensus       221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER  269 (600)
T 3vr4_A          221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGER  269 (600)
T ss_dssp             HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred             hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence            35566654 4567899999999999999999988643    467888877655

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=93.30  E-value=0.047  Score=46.98  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      ..+.|+|+|.+|+|||||+..+.
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHH
Confidence            56889999999999999999984

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=93.09  E-value=0.06  Score=43.74  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+..|+|+|..|+|||||...+...
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568999999999999999999874

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=92.98  E-value=0.063  Score=46.66  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=26.7

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+..+..  .+++.|.|.+|.||||++..+.....
T Consensus       194 Q~~Av~~~~~--~~~~~I~G~pGTGKTt~i~~l~~~l~  229 (574)
T 3e1s_A          194 QASVLDQLAG--HRLVVLTGGPGTGKSTTTKAVADLAE  229 (574)
T ss_dssp             HHHHHHHHTT--CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3444444433  47888999999999999999987654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=92.98  E-value=0.11  Score=43.65  Aligned_cols=40  Identities=15%  Similarity=-0.022  Sum_probs=29.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      -.++-|.|.+|+||||||.++..+...... ..++|++.-.
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~  239 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEM  239 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCC
Confidence            458899999999999999999877543211 2477776643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=92.95  E-value=0.044  Score=52.08  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~  439 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRL  439 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=92.91  E-value=0.016  Score=42.65  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .--|.|+|..|+|||||.+.+.+
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            45689999999999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.91  E-value=0.053  Score=51.69  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-..++|||..|+|||||++.+..-
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccc
Confidence            4578999999999999999999863

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=92.87  E-value=0.14  Score=41.90  Aligned_cols=39  Identities=13%  Similarity=0.153  Sum_probs=29.8

Q ss_pred             cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .|.+...+.|.+++.   -..|.++|..|+|||||...+.+.
T Consensus       147 ~gi~~L~~~I~~~~~---~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          147 IGMAKVMEAINRYRE---GGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             BTHHHHHHHHHHHHT---TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhcc---cCcEEEEcCCCCchHHHHHHHHhh
Confidence            355556666655543   256899999999999999999987

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=92.87  E-value=0.057  Score=49.60  Aligned_cols=22  Identities=14%  Similarity=0.107  Sum_probs=20.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEV  175 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v  175 (204)
                      .-.+++|+|+.|.|||||.+.+
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            3579999999999999999998

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=92.87  E-value=0.1  Score=42.31  Aligned_cols=38  Identities=18%  Similarity=0.363  Sum_probs=28.1

Q ss_pred             HHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          141 STLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       141 ~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+++|.+.|..      ....-|+|+|..|+|||||...+...
T Consensus        11 ~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~   54 (353)
T 2x2e_A           11 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR   54 (353)
T ss_dssp             HHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCC
Confidence            345555555432      24568999999999999999998764

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=92.87  E-value=0.13  Score=43.28  Aligned_cols=40  Identities=18%  Similarity=0.176  Sum_probs=30.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~  195 (204)
                      .-.++-|.|.+|+||||||-++..+...++  ..++|++.-.
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm  235 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM  235 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC
Confidence            346899999999999999999988765431  3577776543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=92.84  E-value=0.097  Score=44.05  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=28.7

Q ss_pred             HHHHHHHHh--hcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          141 STLKEILGS--LSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       141 ~~~~~l~~~--L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +..+.++..  +.+..+.||+|+|..++||+||...++..
T Consensus        51 eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           51 TALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             HHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            344444432  23457899999999999999999999865

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=92.81  E-value=0.069  Score=45.95  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ....|+|+|..|+|||||+..+...
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~   36 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLF   36 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhh
Confidence            4678999999999999999999863

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=92.75  E-value=0.13  Score=44.43  Aligned_cols=48  Identities=19%  Similarity=0.143  Sum_probs=36.2

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      +.++.|.. ..-+-++|.|-.|+|||+|+..+-+...    -+.++++-+.+.
T Consensus       210 rvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER  258 (578)
T 3gqb_A          210 RILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGER  258 (578)
T ss_dssp             HHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEEC
T ss_pred             hhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEeccc
Confidence            34555543 3567899999999999999999988643    467788877655

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=92.66  E-value=0.15  Score=41.72  Aligned_cols=39  Identities=13%  Similarity=0.066  Sum_probs=29.7

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      |.+..++.|.+++.   -..|.++|..|+|||||.+.+.+..
T Consensus       146 gi~~L~~~l~~~~~---~~~i~~vG~~nvGKStliN~L~~~~  184 (368)
T 3h2y_A          146 GIAELADAIEYYRG---GKDVYVVGCTNVGKSTFINRMIKEF  184 (368)
T ss_dssp             THHHHHHHHHHHHT---TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             CHHHHHhhhhhhcc---cceEEEecCCCCChhHHHHHHHhhh
Confidence            55555566655442   2578999999999999999999873

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=92.66  E-value=0.047  Score=50.04  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      .-.+++|+|+.|.|||||.+.+.
T Consensus       672 ~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          672 SERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             SCCEEEEESCCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCchHHHHHHHH
Confidence            35799999999999999999885

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=92.60  E-value=0.14  Score=40.41  Aligned_cols=29  Identities=21%  Similarity=0.278  Sum_probs=23.4

Q ss_pred             CCCccEEEEEc-CCCCcHHHHHHHHHHHhc
Q 046665          152 NHNFNMIGVYG-MGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       152 ~~~~~vI~IvG-~gGiGKTTLa~~v~~~~~  180 (204)
                      +...++|.|+| .||+||||+|-.+-.-..
T Consensus        89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA  118 (286)
T 3la6_A           89 QAQNNVLMMTGVSPSIGMTFVCANLAAVIS  118 (286)
T ss_dssp             TTTCCEEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            45678999997 578999999988876544

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=92.57  E-value=0.082  Score=44.72  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -|+|+|..|+|||||...+.+..
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            38999999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.54  E-value=0.035  Score=52.95  Aligned_cols=24  Identities=21%  Similarity=0.301  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-..|+|||..|+|||||++.++.
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            456899999999999999999986

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=92.53  E-value=0.11  Score=43.68  Aligned_cols=51  Identities=20%  Similarity=0.133  Sum_probs=34.3

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccC--CCCceEEEEEcCCC
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGN--NLFEKVISAQVSQT  196 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~--~~F~~~~wv~vs~~  196 (204)
                      .++.|.. ..-+-++|.|-.|+|||||+.+|.++....  ++=-.++++-+.+.
T Consensus       141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR  194 (465)
T 3vr4_D          141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGIT  194 (465)
T ss_dssp             HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEEC
T ss_pred             EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCC
Confidence            4555543 234567899999999999999999886642  11115677766654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=92.43  E-value=0.093  Score=42.53  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=27.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQV  193 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v  193 (204)
                      -.++-|.|.+|+||||||..+..+....+  ..++|++.
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl   82 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL   82 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC
Confidence            46888999999999999999987754321  34666654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=92.38  E-value=0.072  Score=49.45  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEV  175 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v  175 (204)
                      -.+++|+|+.|.|||||.+.+
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH
Confidence            479999999999999999998

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=92.30  E-value=0.062  Score=44.16  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....|.|=|.-|+||||+++.+.+...
T Consensus        48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           48 TLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345789999999999999999987654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=92.29  E-value=0.078  Score=45.84  Aligned_cols=26  Identities=27%  Similarity=0.247  Sum_probs=23.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....|+|+|..|+|||||.+.+....
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            45789999999999999999998753

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=92.22  E-value=0.061  Score=43.66  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +..|+++|..|+|||||...+.+.
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcC
Confidence            346899999999999999998764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=92.16  E-value=0.2  Score=45.32  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=34.7

Q ss_pred             ccccchHHHHHHHHHhhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN-------------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..+.|.+..++.|.+.+.-             ...+-|-++|+.|.|||.||+.+.+...
T Consensus       477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~  536 (806)
T 3cf2_A          477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ  536 (806)
T ss_dssp             TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence            4567888777777665421             1244578999999999999999998654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=92.11  E-value=0.15  Score=49.69  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=33.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      -+++-|+|..|.|||+||+++.......  =...++|++...+
T Consensus      1082 g~~~l~~G~~g~GKT~la~~~~~~~~~~--g~~~~fi~~~~~~ 1122 (1706)
T 3cmw_A         1082 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHAL 1122 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCC
T ss_pred             CCEEEEEcCCCCChHHHHHHHHHHhhhc--CCceeEEEcccch
Confidence            4579999999999999999999876543  3468888887755

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=92.09  E-value=0.042  Score=49.86  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHH-HH
Q 046665          155 FNMIGVYGMGGIGKTMLVKE-VA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~-v~  176 (204)
                      -.+++|+|..|+|||||++. ++
T Consensus       523 Geiv~I~G~nGSGKSTLl~~~L~  545 (842)
T 2vf7_A          523 GVMTSVTGVSGSGKSTLVSQALV  545 (842)
T ss_dssp             SSEEEEECCTTSSHHHHCCCCCH
T ss_pred             CCEEEEEcCCCcCHHHHHHHHHH
Confidence            35899999999999999996 55

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=91.93  E-value=0.039  Score=50.62  Aligned_cols=21  Identities=43%  Similarity=0.656  Sum_probs=18.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEV  175 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v  175 (204)
                      -.+++|+|..|+|||||++.+
T Consensus       650 Geiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          650 GTFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             SSEEECCBCTTSSHHHHHTTT
T ss_pred             CCEEEEEcCCCCCHHHHHHHH
Confidence            358999999999999999985

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=91.84  E-value=0.11  Score=42.68  Aligned_cols=26  Identities=15%  Similarity=0.100  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..-+.|+|..|.|||||++.+.....
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~   60 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREY   60 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999987654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=91.73  E-value=0.097  Score=45.65  Aligned_cols=28  Identities=21%  Similarity=0.498  Sum_probs=24.3

Q ss_pred             CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          152 NHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +....+|+|+|..|+|||||...+....
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            4567899999999999999999998753

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=91.68  E-value=0.15  Score=37.95  Aligned_cols=34  Identities=18%  Similarity=0.033  Sum_probs=23.1

Q ss_pred             HHhhcCCCccEEEEEcCCCCcHH-HHHHHHHHHhc
Q 046665          147 LGSLSNHNFNMIGVYGMGGIGKT-MLVKEVAGQAK  180 (204)
Q Consensus       147 ~~~L~~~~~~vI~IvG~gGiGKT-TLa~~v~~~~~  180 (204)
                      +.......-++.-|+|.-|+||| .|.+.++|...
T Consensus        12 ~~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~   46 (195)
T 1w4r_A           12 VPRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQI   46 (195)
T ss_dssp             -------CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             cccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            33333345678999999999999 88888888654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=91.66  E-value=0.12  Score=42.13  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +.++..|+|..|.|||||.-.||-
T Consensus        24 ~~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           24 EKGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999984

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=91.58  E-value=0.12  Score=43.46  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=22.0

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ...++..|.|.+|.||||+.+...+
T Consensus       159 ~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          159 SSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccccEEEEEcCCCCCHHHHHHHHhc
Confidence            3678999999999999999988764

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=91.55  E-value=0.15  Score=43.17  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=36.2

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCC--CceEEEEEcCCCC
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNL--FEKVISAQVSQTP  197 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~--F~~~~wv~vs~~~  197 (204)
                      .++.|.. ..-.-++|.|-.|+|||||+.+|.++......  =+.++++-+.+..
T Consensus       142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~  196 (469)
T 2c61_A          142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN  196 (469)
T ss_dssp             HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH
T ss_pred             eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc
Confidence            4555543 34567888999999999999999998665321  1457777766543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=91.54  E-value=0.082  Score=44.17  Aligned_cols=26  Identities=15%  Similarity=0.125  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ....|+|+|..|+|||||...+..+.
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhc
Confidence            34578999999999999999987654

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=91.53  E-value=0.2  Score=42.60  Aligned_cols=41  Identities=22%  Similarity=0.051  Sum_probs=30.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      -.++-|.|.+|+||||||.++..+...+.. ..++|++.-.+
T Consensus       242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~s  282 (503)
T 1q57_A          242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEES  282 (503)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSSC
T ss_pred             CeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccCC
Confidence            468899999999999999999877653311 24778776543

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=91.41  E-value=0.19  Score=42.39  Aligned_cols=42  Identities=26%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             ccchHHHHHHHHHh--hcCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          136 FESRKSTLKEILGS--LSNHNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       136 ~~g~~~~~~~l~~~--L~~~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +.=.++.++.|+..  +.+..+.||+|+|.-+.|||+|...+..
T Consensus        46 l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~   89 (457)
T 4ido_A           46 FELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR   89 (457)
T ss_dssp             EEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred             EEECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHH
Confidence            33344444545432  2345789999999999999999998764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=91.36  E-value=0.13  Score=41.24  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-+.|.|..|+||||||..+...
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc
Confidence            56899999999999999999874

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=91.27  E-value=0.12  Score=45.88  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ....|+|+|..|+|||||+..+...
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~   35 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYY   35 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=91.15  E-value=0.14  Score=38.81  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=17.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      +.+.|+|..|+||||+.....
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHH
Confidence            688999999999998665554

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=91.07  E-value=0.14  Score=44.73  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -+++.|.|.+|.||||++..+....
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            4789999999999999988877654

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=90.95  E-value=0.2  Score=42.23  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=27.3

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .++.|.. ..-+-++|.|-.|+|||||+.+|.++...
T Consensus       137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a  173 (464)
T 3gqb_B          137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV  173 (464)
T ss_dssp             HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred             eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence            4555543 34557889999999999999999987654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=90.91  E-value=0.15  Score=42.18  Aligned_cols=27  Identities=22%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          152 NHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       152 ~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +.....|+|+|..|+|||||...+...
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~   34 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYV   34 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhh
Confidence            345677999999999999999999874

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=90.66  E-value=0.41  Score=40.78  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=34.4

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHH-HHHHHHHhccCCCCc-eEEEEEcCCCC
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTML-VKEVAGQAKGNNLFE-KVISAQVSQTP  197 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTL-a~~v~~~~~~~~~F~-~~~wv~vs~~~  197 (204)
                      .++.|.. ..-+-++|+|-.|+|||+| +..|.|...    -+ .++++-+.+..
T Consensus       152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~  202 (502)
T 2qe7_A          152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQ  202 (502)
T ss_dssp             HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCH
T ss_pred             ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcc
Confidence            4555543 3456789999999999999 568888653    45 35777777654

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=90.52  E-value=0.42  Score=40.78  Aligned_cols=52  Identities=17%  Similarity=0.119  Sum_probs=36.2

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHH-HHHHHHHhcc----CCCCc-eEEEEEcCCCC
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTML-VKEVAGQAKG----NNLFE-KVISAQVSQTP  197 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTL-a~~v~~~~~~----~~~F~-~~~wv~vs~~~  197 (204)
                      .++.|.. ..-.-++|+|-.|+|||+| +..|.|....    .++-+ .++++-+.+..
T Consensus       152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~  210 (510)
T 2ck3_A          152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR  210 (510)
T ss_dssp             HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCH
T ss_pred             eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCc
Confidence            4555543 3456789999999999999 5677776552    12344 47888887765

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=90.41  E-value=0.31  Score=48.23  Aligned_cols=44  Identities=18%  Similarity=0.221  Sum_probs=34.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI  199 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  199 (204)
                      .-+++-|+|.+|+||||||.++..+.....  ..++|++.-.+++.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~  425 (2050)
T 3cmu_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDP  425 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHH
Confidence            356999999999999999999988765331  35888887776653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=90.41  E-value=0.27  Score=47.86  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCCh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQI  199 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~  199 (204)
                      .-+++-|.|.+|+||||||.++..+....  =..++|++...+++.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~  425 (1706)
T 3cmw_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP  425 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHH
Confidence            35689999999999999999998765432  235888888777653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=90.31  E-value=0.18  Score=51.15  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      ...+-.-+||.||+|||||++.+..-..-.     +.-+.++++|++.+.
T Consensus      1607 ~p~G~~LLvGvgGsGkqSltrLaa~i~~~~-----~fqi~~~~~Y~~~~f 1651 (2695)
T 4akg_A         1607 QVQGHMMLIGASRTGKTILTRFVAWLNGLK-----IVQPKIHRHSNLSDF 1651 (2695)
T ss_dssp             SSSEEEEEECTTTSCHHHHHHHHHHHTTCE-----EECCCCCTTCCHHHH
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHHHHhCCe-----eEEEEeeCCCCHHHH
Confidence            345567899999999999999998765432     445678888887653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=90.30  E-value=0.12  Score=43.94  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~  178 (204)
                      |+|+|..|+|||||...+.+.
T Consensus       236 V~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          236 TVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEECCTTSSHHHHHHHCC--
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999988765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=90.26  E-value=0.34  Score=40.67  Aligned_cols=42  Identities=19%  Similarity=0.288  Sum_probs=31.7

Q ss_pred             cchHHHHHHHHHhhcC-------CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          137 ESRKSTLKEILGSLSN-------HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~-------~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .|.++.++.+.+.+..       ....-|+++|.+|+|||||...+...
T Consensus       170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence            4666667777766531       24567899999999999999999854

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=90.23  E-value=0.33  Score=42.66  Aligned_cols=53  Identities=19%  Similarity=0.216  Sum_probs=29.3

Q ss_pred             HHHHHHHhhcCCCccEEEEEcCCCCcHHH-HHHHHHHHhccCCCCceEEEEEcCCCCChH
Q 046665          142 TLKEILGSLSNHNFNMIGVYGMGGIGKTM-LVKEVAGQAKGNNLFEKVISAQVSQTPQIK  200 (204)
Q Consensus       142 ~~~~l~~~L~~~~~~vI~IvG~gGiGKTT-La~~v~~~~~~~~~F~~~~wv~vs~~~~~~  200 (204)
                      +.+-+...|...+  +--|.|++|.|||+ ++..|+.-.. +   ...|.|+...+-.++
T Consensus       194 Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~~-~---~~~ILv~a~TN~AvD  247 (646)
T 4b3f_X          194 QKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAVK-Q---GLKVLCCAPSNIAVD  247 (646)
T ss_dssp             HHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHHH-T---TCCEEEEESSHHHHH
T ss_pred             HHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHHh-C---CCeEEEEcCchHHHH
Confidence            3344444454333  55688999999985 4555544333 1   235666654443333

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=90.20  E-value=0.41  Score=40.83  Aligned_cols=48  Identities=17%  Similarity=0.123  Sum_probs=34.2

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHH-HHHHHHHhccCCCCc-eEEEEEcCCCC
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTML-VKEVAGQAKGNNLFE-KVISAQVSQTP  197 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTL-a~~v~~~~~~~~~F~-~~~wv~vs~~~  197 (204)
                      .++.|.. ..-+-++|+|-.|+|||+| +..|.|...    -+ .++++-+.+..
T Consensus       165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~  215 (515)
T 2r9v_A          165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKK  215 (515)
T ss_dssp             HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCH
T ss_pred             ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCc
Confidence            4444443 3456799999999999999 568887642    45 36778777665

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=90.07  E-value=0.21  Score=45.46  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=23.0

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...+-|+|+|..|+|||||+..+...
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHh
Confidence            45778999999999999999998765

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=89.89  E-value=0.15  Score=41.26  Aligned_cols=26  Identities=31%  Similarity=0.157  Sum_probs=22.6

Q ss_pred             ccEEEEEcCCCCcHHHHH-HHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLV-KEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa-~~v~~~~~  180 (204)
                      ...|.|=|.=|+||||++ +.+.+...
T Consensus        12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~   38 (341)
T 1osn_A           12 VLRIYLDGAYGIGKTTAAEEFLHHFAI   38 (341)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            467899999999999999 99988644

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=89.87  E-value=0.15  Score=46.72  Aligned_cols=19  Identities=37%  Similarity=0.459  Sum_probs=16.7

Q ss_pred             ccEEEEEcCCCCcHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVK  173 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~  173 (204)
                      -.+++|+|..|+|||||+.
T Consensus       610 Geiv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          610 GVFVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             SSEEEEECSTTSSHHHHHH
T ss_pred             CcEEEEEccCCCChhhhHH
Confidence            3579999999999999973

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=89.84  E-value=0.25  Score=43.27  Aligned_cols=40  Identities=13%  Similarity=0.047  Sum_probs=26.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      .+.-|.|++|.||||++..+.......  -...+.++...+-
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~  235 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNI  235 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHH
Confidence            467799999999999877776554311  2335666654433

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=89.70  E-value=0.14  Score=41.92  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      .+.|+|+|..++|||||+..+.
T Consensus        21 m~~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           21 MANVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEEEESTTSSHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4489999999999999999887

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=89.46  E-value=0.18  Score=42.65  Aligned_cols=26  Identities=19%  Similarity=0.107  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...--|+|+|..|+|||||...+..+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34456789999999999999988765

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=89.29  E-value=0.38  Score=41.69  Aligned_cols=36  Identities=22%  Similarity=0.510  Sum_probs=23.9

Q ss_pred             HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +.++.-+......++-..|.||+||||+|-.+--..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l  351 (589)
T 1ihu_A          316 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL  351 (589)
T ss_dssp             HHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHH
Confidence            334443333344566667999999999987776554

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=89.08  E-value=0.23  Score=39.72  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-+.|.|..|+||||||-.+-.
T Consensus       148 ~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4588999999999999988765

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=89.08  E-value=0.56  Score=35.49  Aligned_cols=27  Identities=15%  Similarity=0.022  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCcHHH-HHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTM-LVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTT-La~~v~~~~~  180 (204)
                      .-.+.-|+|.-|.|||| |.+.+++-..
T Consensus        27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~   54 (219)
T 3e2i_A           27 SGWIECITGSMFSGKSEELIRRLRRGIY   54 (219)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45678889999999999 7788776543

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=88.81  E-value=0.79  Score=36.44  Aligned_cols=29  Identities=14%  Similarity=0.071  Sum_probs=23.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      ..-+|.+=|+-|+||+|.++.++....-+
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldpr  113 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPR  113 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence            45567778999999999999999865543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=88.57  E-value=0.24  Score=43.32  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=22.3

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +...+.. ...--|+|+|..|+|||||...+..+
T Consensus       157 l~~~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          157 ISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             ----CCCCCCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             HHHHHhccCCceEEEEEECCCCCHHHHHHHHHHh
Confidence            4444433 33456889999999999999998643

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=88.55  E-value=0.35  Score=42.12  Aligned_cols=25  Identities=16%  Similarity=0.142  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...-|+|+|..++|||||...+..+
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~  200 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFE  200 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHH
Confidence            3556999999999999999888543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=88.49  E-value=0.19  Score=41.32  Aligned_cols=25  Identities=24%  Similarity=0.593  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +..-|+|+|.+.+|||||.+.+-+.
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~   95 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGT   95 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999864

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=88.41  E-value=0.74  Score=39.23  Aligned_cols=48  Identities=21%  Similarity=0.124  Sum_probs=33.5

Q ss_pred             HHHhhcC-CCccEEEEEcCCCCcHHHHH-HHHHHHhccCCCCc-eEEEEEcCCCC
Q 046665          146 ILGSLSN-HNFNMIGVYGMGGIGKTMLV-KEVAGQAKGNNLFE-KVISAQVSQTP  197 (204)
Q Consensus       146 l~~~L~~-~~~~vI~IvG~gGiGKTTLa-~~v~~~~~~~~~F~-~~~wv~vs~~~  197 (204)
                      .++.|.. ..-.-++|.|-.|+|||+|+ ..|.|..    +-+ .++++-+.+..
T Consensus       152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~  202 (513)
T 3oaa_A          152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKA  202 (513)
T ss_dssp             HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCH
T ss_pred             eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCCh
Confidence            4444443 34567899999999999995 6777752    233 36788888764

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=88.19  E-value=0.8  Score=37.29  Aligned_cols=46  Identities=15%  Similarity=0.266  Sum_probs=30.2

Q ss_pred             ccchHHHHHHHHHh---hcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          136 FESRKSTLKEILGS---LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       136 ~~g~~~~~~~l~~~---L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      ++|......++...   +...+.. +-|.|..|.||+++|+.+++...-.
T Consensus       131 ~ig~s~~~~~~~~~~~~~a~~~~~-vli~GesGtGKe~lAr~ih~~s~r~  179 (368)
T 3dzd_A          131 FVGEHPKILEIKRLIPKIAKSKAP-VLITGESGTGKEIVARLIHRYSGRK  179 (368)
T ss_dssp             CCCCSHHHHHHHHHHHHHHTSCSC-EEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             ccccchHHHHHHhhhhhhhccchh-heEEeCCCchHHHHHHHHHHhcccc
Confidence            45554444444333   3333444 5589999999999999999876533

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=88.13  E-value=0.31  Score=50.22  Aligned_cols=62  Identities=18%  Similarity=0.150  Sum_probs=37.8

Q ss_pred             ccchHHHHHHHHHh--hcCCCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665          136 FESRKSTLKEILGS--LSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       136 ~~g~~~~~~~l~~~--L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      ++=.++.++.|...  ......+-.-+||.||+||++|++.+..-.+-.     +.-+.++++|++.+.
T Consensus      1625 LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~-----vfqi~i~k~Y~~~~f 1688 (3245)
T 3vkg_A         1625 LVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLS-----IYTIKVNNNYKSSDF 1688 (3245)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCE-----EECCC----CCHHHH
T ss_pred             EEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCe-----eEEEeeeCCCCHHHH
Confidence            44444444444332  233455567799999999999999998865422     345678888887653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=87.94  E-value=0.32  Score=40.67  Aligned_cols=25  Identities=12%  Similarity=0.062  Sum_probs=20.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...-|+|+|..++|||||...+..+
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~   40 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYL   40 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3457899999999999999888443

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=87.90  E-value=0.14  Score=43.78  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..++..|+|..|.|||||...++--
T Consensus        59 ~~g~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           59 GGGFCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             CCSEEEEEESHHHHHHHHTHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999743

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=87.84  E-value=0.12  Score=43.94  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -.|+|+|..|+|||||...+.+..
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~  267 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNED  267 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCC
Confidence            358899999999999999998874

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=87.82  E-value=0.22  Score=42.09  Aligned_cols=26  Identities=19%  Similarity=0.088  Sum_probs=21.7

Q ss_pred             CCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          152 NHNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       152 ~~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ......|+|+|..++|||||...+..
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHH
Confidence            34556789999999999999988754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=87.42  E-value=0.34  Score=39.41  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=17.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      .--+-+.|.|++||||+.|++-
T Consensus        32 ~~klLlLG~geSGKST~~KQmk   53 (353)
T 1cip_A           32 EVKLLLLGAGESGKSTIVKQMK   53 (353)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceEEEEcCCCCCchhHHHHHH
Confidence            3456788999999999988764

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=87.03  E-value=0.43  Score=40.65  Aligned_cols=40  Identities=15%  Similarity=0.101  Sum_probs=30.2

Q ss_pred             CccEEEEEcCCCCcHHHH-HHHHHHHhccCCCCc-eEEEEEcCCCC
Q 046665          154 NFNMIGVYGMGGIGKTML-VKEVAGQAKGNNLFE-KVISAQVSQTP  197 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTL-a~~v~~~~~~~~~F~-~~~wv~vs~~~  197 (204)
                      .-.-++|+|-.|+|||+| +..|.|...    -+ .++++-+.+..
T Consensus       162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~  203 (507)
T 1fx0_A          162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKA  203 (507)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCH
T ss_pred             cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCc
Confidence            346789999999999999 568887642    45 46777777655

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=86.93  E-value=0.37  Score=42.85  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=22.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +.-.|+|+|..|+|||||...+....
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~   93 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGEN   93 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44569999999999999999998653

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=86.88  E-value=0.94  Score=37.12  Aligned_cols=43  Identities=21%  Similarity=0.364  Sum_probs=29.0

Q ss_pred             ccchHHHHHHHHHh---hcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          136 FESRKSTLKEILGS---LSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       136 ~~g~~~~~~~l~~~---L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ++|......++.+.   +...+..| -|.|..|+|||++|+.++...
T Consensus       139 ~ig~s~~m~~l~~~i~~~a~~~~~v-li~Ge~GtGK~~lAr~ih~~s  184 (387)
T 1ny5_A          139 YVFESPKMKEILEKIKKISCAECPV-LITGESGVGKEVVARLIHKLS  184 (387)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSCE-EEECSTTSSHHHHHHHHHHHS
T ss_pred             hhhccHHhhHHHHHHHHhcCCCCCe-EEecCCCcCHHHHHHHHHHhc
Confidence            33433344444443   33445555 899999999999999999864

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=86.75  E-value=0.4  Score=41.37  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      .++=|+|+|..+.|||||+-.+.
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL   52 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLL   52 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCHHHHHHHHH
Confidence            57889999999999999998875

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=86.47  E-value=0.086  Score=44.08  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ...-|+|+|..|+|||||+..+.+.
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~   57 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQ   57 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC-
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcC
Confidence            4567999999999999999877643

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=86.06  E-value=0.94  Score=44.95  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=37.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK  201 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  201 (204)
                      .-+||=|+|+.++||||||-++.-..+-.  =..++||...+.+|+.-
T Consensus      1774 ~g~~~e~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~ 1819 (2050)
T 3cmu_A         1774 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY 1819 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH
T ss_pred             CCcEEEEECCCCcCHHHHHHHHHHHHhhc--CCEEEEEcCccccCHHH
Confidence            45899999999999999999998654422  35689999988888653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=85.95  E-value=0.42  Score=40.50  Aligned_cols=23  Identities=30%  Similarity=0.393  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -.|+++|..++|||||...+...
T Consensus        20 ~~I~iiG~~d~GKSTLi~~L~~~   42 (482)
T 1wb1_A           20 INLGIFGHIDHGKTTLSKVLTEI   42 (482)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHHCC
Confidence            46899999999999999999754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=85.39  E-value=0.41  Score=43.46  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=17.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKE  174 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~  174 (204)
                      -+.+.|.|..|+||||||--
T Consensus        36 ~~l~viTGvSGSGKSSLafd   55 (842)
T 2vf7_A           36 DALVVFTGVSGSGKSSLAFG   55 (842)
T ss_dssp             SSEEEEESSTTSSHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHH
Confidence            46889999999999999953

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=85.18  E-value=0.58  Score=38.79  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-+.|+|..|+|||++++.+..+.
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li~~~   77 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELAYTG   77 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999988777654

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=85.02  E-value=0.64  Score=42.01  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+.-|.|++|.||||++..+....
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999998877776554

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=84.84  E-value=0.82  Score=34.44  Aligned_cols=27  Identities=15%  Similarity=-0.045  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .-.+.-++|..|.||||.+-....+..
T Consensus        27 ~G~l~vitG~MgsGKTT~lL~~a~r~~   53 (214)
T 2j9r_A           27 NGWIEVICGSMFSGKSEELIRRVRRTQ   53 (214)
T ss_dssp             SCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            346888999999999988766665543

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=84.69  E-value=2.3  Score=32.13  Aligned_cols=22  Identities=18%  Similarity=0.064  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 046665          158 IGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       158 I~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +-|+|..|.|||.+|..+....
T Consensus       111 ~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A          111 GCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHS
T ss_pred             EEEEeCCCCCHHHHHHHHHHHc
Confidence            7788999999999998887654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=84.28  E-value=0.58  Score=38.75  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=18.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      ..-+-+.|.|++||||+.|++-
T Consensus        40 ~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           40 THRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             cceEEEecCCCCchhhHHHHHH
Confidence            3456788999999999998863

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=83.16  E-value=0.68  Score=39.60  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..-+.|.|..|+||||+++.+.-..
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~li~sL  191 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAMILSM  191 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999887643

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=82.59  E-value=1.5  Score=44.86  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHh
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKK  201 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  201 (204)
                      .-+.+.|++|+|||++++.+-+..+..     ++-+..+...+..+
T Consensus       646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~-----~v~~nc~e~ld~~~  686 (2695)
T 4akg_A          646 YGGCFFGPAGTGKTETVKAFGQNLGRV-----VVVFNCDDSFDYQV  686 (2695)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHTTTCC-----CEEEETTSSCCHHH
T ss_pred             CCCcccCCCCCCcHHHHHHHHHHhCCc-----EEEEECCCCCChhH
Confidence            345688999999999999999866522     23335556555544

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=82.53  E-value=0.69  Score=39.68  Aligned_cols=19  Identities=32%  Similarity=0.532  Sum_probs=16.8

Q ss_pred             ccEEEEEcCCCCcHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVK  173 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~  173 (204)
                      -.++.+.|..|.|||||+.
T Consensus       241 g~~~lffGlSGtGKTTLs~  259 (540)
T 2olr_A          241 GDVAVFFGLSGTGKTTLST  259 (540)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCHHHHhc
Confidence            3689999999999999984

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=82.46  E-value=0.68  Score=39.71  Aligned_cols=18  Identities=39%  Similarity=0.624  Sum_probs=16.4

Q ss_pred             cEEEEEcCCCCcHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVK  173 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~  173 (204)
                      .++.+.|..|.|||||+.
T Consensus       236 ~~~~ffGlSGtGKTTLs~  253 (532)
T 1ytm_A          236 NTAIFFGLSGTGKTTLST  253 (532)
T ss_dssp             SEEEEECCTTSSHHHHHC
T ss_pred             eEEEEEecCCCCHHHHhh
Confidence            589999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	8e-05

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 8/70 (11%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN--NLFEKVISAQVS 194
           E     + + L  + + +   + ++G  G GK+++  +   ++       ++ ++  + S
Sbjct: 26  EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 85

Query: 195 QTPQIKKIQE 204
            T        
Sbjct: 86  GTAPKSTFDL 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.74
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.42
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.41
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.12
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.06
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.02
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.02
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.0
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.99
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.98
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.97
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.96
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.92
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.82
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.8
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.79
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.77
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.63
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.43
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.42
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.37
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.16
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.12
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.07
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.03
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.02
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.99
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.92
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.92
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.89
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.87
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.85
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.84
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.84
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.84
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.83
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.82
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.82
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.8
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.8
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.79
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.79
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.75
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.71
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.71
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.66
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.66
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.64
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.63
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.63
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.62
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.6
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.57
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.51
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.49
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.48
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.45
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.45
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.45
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.44
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.43
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.41
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.35
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.29
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.27
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.24
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.14
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.11
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.94
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.75
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.72
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.7
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.67
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.63
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.52
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.39
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.38
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.37
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.36
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.22
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.09
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.09
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.0
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.97
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.77
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.59
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.3
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.27
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.27
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.03
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.95
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.94
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.82
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.56
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.39
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.25
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.18
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.13
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.95
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.53
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.2
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.19
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.05
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.81
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.17
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.88
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.45
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.36
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.0
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.92
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	88.67
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.14
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	87.11
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	87.0
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.79
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.4
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	85.66
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.05
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	82.04
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.91
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	80.57

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.74  E-value=2e-18  Score=136.10  Aligned_cols=71  Identities=11%  Similarity=0.170  Sum_probs=61.9

Q ss_pred             CCccccchHHHHHHHHHhhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhc--cCCCCceEEEEEcCCCCChHhh
Q 046665          132 GFIHFESRKSTLKEILGSLS---NHNFNMIGVYGMGGIGKTMLVKEVAGQAK--GNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       132 ~~~~~~g~~~~~~~l~~~L~---~~~~~vI~IvG~gGiGKTTLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      ..+.++||+.++++|+++|.   +.+.++|+|+||||+||||||+++|++..  .+.+|++++||++|+.++...+
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l   93 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF   93 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred             CCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHH
Confidence            35668899999999999985   35688999999999999999999999854  5678999999999999987654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.42  E-value=3.9e-07  Score=69.17  Aligned_cols=62  Identities=18%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             ccccchHHHHHHHHHhhcC------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          134 IHFESRKSTLKEILGSLSN------HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      ..++||+.+++.|.++|..      ...+.+-|+|+.|+||||+|+.+.+.......|. .+|+.....
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~-~~~~~~~~~   83 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTAR-FVYINGFIY   83 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCE-EEEEETTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCc-EEEecchhh
Confidence            4588999999999998852      3467899999999999999999999876443333 345544433

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.41  E-value=3.4e-07  Score=69.62  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=38.5

Q ss_pred             CCccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          132 GFIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       132 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....++||+++++.|.+.    ..++|.|+|++|+|||||++++.++..
T Consensus        10 ~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          10 NRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             SGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             ChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            357799999999988774    457899999999999999999988765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=1.9e-06  Score=64.14  Aligned_cols=48  Identities=17%  Similarity=0.235  Sum_probs=41.7

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .+++|.+..++.|.+|+.++....+-++|+.|+||||||+.+.+....
T Consensus        14 ~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhc
Confidence            568999999999999998877765679999999999999999987543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.06  E-value=2.2e-06  Score=63.94  Aligned_cols=48  Identities=15%  Similarity=0.152  Sum_probs=42.0

Q ss_pred             CccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          133 FIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      -.+++|.+..++.|..|+.++...-+-++|+.|+||||||+.+-+...
T Consensus        23 ~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          23 LDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            356889999999999999988877788999999999999999987543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=2.7e-06  Score=63.25  Aligned_cols=47  Identities=26%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.|.+|+.++...-+-++|+.|+||||+|+.+.+...
T Consensus        15 ~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence            56889999999999999988776677999999999999999887654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=6.8e-06  Score=61.81  Aligned_cols=59  Identities=24%  Similarity=0.348  Sum_probs=44.9

Q ss_pred             ccccchHHHHHHHHHhhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          134 IHFESRKSTLKEILGSLSN-----------------HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-----------------~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      .+++|.+..+++|.+||..                 ...+.+-++|+.|+||||+|+.+.+...    ++ ..++..+..
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~----~~-~~~~~~~~~   88 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YD-ILEQNASDV   88 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CE-EEEECTTSC
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHH----hh-hhccccccc
Confidence            5688999999999998843                 1346789999999999999999998754    22 445555544


Q ss_pred             C
Q 046665          197 P  197 (204)
Q Consensus       197 ~  197 (204)
                      .
T Consensus        89 ~   89 (253)
T d1sxja2          89 R   89 (253)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.00  E-value=1.8e-06  Score=65.73  Aligned_cols=47  Identities=21%  Similarity=0.208  Sum_probs=37.1

Q ss_pred             CccccchHHHHHHHHHhhc----CC-C----ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          133 FIHFESRKSTLKEILGSLS----NH-N----FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~----~~-~----~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +..+.||+.+++.|.++|.    ++ .    ..++.++|+.|+||||+++.+.+..
T Consensus        15 P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          15 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence            4568899999999998763    11 1    2356678999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=5.4e-06  Score=60.41  Aligned_cols=45  Identities=22%  Similarity=0.291  Sum_probs=38.8

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +.++||+.++++++..|...+-+-+-+||.+|+|||+++..+...
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHH
Confidence            357899999999999998766666789999999999998877764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=2.2e-06  Score=63.97  Aligned_cols=46  Identities=17%  Similarity=0.263  Sum_probs=40.1

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..++.|.+|+......-+-++|+.|+|||||++.+.+..
T Consensus        12 ~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          12 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            4578998889999999988777778899999999999999998763

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=1.3e-05  Score=59.79  Aligned_cols=47  Identities=21%  Similarity=0.296  Sum_probs=38.7

Q ss_pred             ccccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.|..|+..     ....-+-++|++|+||||||+.+.+...
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccC
Confidence            5689999999999888752     2345577999999999999999998765

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=5.6e-06  Score=63.40  Aligned_cols=45  Identities=22%  Similarity=0.260  Sum_probs=38.4

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..++||+.++++++..|....-+-+-+||.+|+|||+|+..+...
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence            357899999999999998766566669999999999998887765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.92  E-value=1.8e-05  Score=59.10  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=37.9

Q ss_pred             ccccchHHHHHHHHHhhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLSN-----HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+++|.+..++.|..|+..     ..+.-+-++|+.|+||||||+.+.+...
T Consensus         9 ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2           9 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999888888877742     2355567999999999999999998765

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=1.2e-05  Score=64.78  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=42.0

Q ss_pred             ccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHH----HHHHHhccCCCCceEEEE
Q 046665          134 IHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVK----EVAGQAKGNNLFEKVISA  191 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~----~v~~~~~~~~~F~~~~wv  191 (204)
                      +.++||+.++++++..|...+-+-+-+||.+|+|||+|+.    .|.+..-.....+.++|.
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~   83 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS   83 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred             CCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            4578999999999999986655556788999999999774    444432222335666665

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.80  E-value=2.4e-05  Score=56.15  Aligned_cols=32  Identities=19%  Similarity=0.355  Sum_probs=26.9

Q ss_pred             cCCCccEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          151 SNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       151 ~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      ...+.-+|+|.|..|+||||||+.+.+.....
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            34567799999999999999999998876643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.79  E-value=6.8e-06  Score=56.87  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ++|.|+|+.|+||||||+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47889999999999999998754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=1e-05  Score=60.71  Aligned_cols=46  Identities=11%  Similarity=0.125  Sum_probs=38.1

Q ss_pred             ccccchHHHHHHHHHhhcCC-CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNH-NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~-~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+...+.|.+++... ...-+-++|++|+||||+|+.+.+..
T Consensus        11 ~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          11 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            46889999999998888654 34446699999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.3e-05  Score=57.51  Aligned_cols=28  Identities=18%  Similarity=0.154  Sum_probs=24.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ...+|-++|+.|+||||+|+.+......
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3568899999999999999999887653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=4e-05  Score=54.60  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=22.9

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ....+|-++|+.|+||||+|+.+...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999999999999998654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=9.1e-05  Score=55.32  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=39.4

Q ss_pred             ccccchHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .+++|.+..++.|.+++..++ .+.+-++|..|+||||+|+.+.+..
T Consensus        12 ~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence            568899999999999998766 4567899999999999999987654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.37  E-value=0.00012  Score=55.10  Aligned_cols=27  Identities=22%  Similarity=0.210  Sum_probs=24.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|-++|+.|+||||||+.+.+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            467789999999999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.16  E-value=0.00017  Score=56.00  Aligned_cols=47  Identities=21%  Similarity=0.260  Sum_probs=35.3

Q ss_pred             ccccchHHHHHHHHHhhc--------------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSLS--------------NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~--------------~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ..++|.+..++.+...+.              +...+-|-++|+.|+|||+||+.+.+...
T Consensus        14 ~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc
Confidence            356788888777754331              11457788999999999999999998654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00048  Score=51.97  Aligned_cols=47  Identities=28%  Similarity=0.333  Sum_probs=35.7

Q ss_pred             ccccchHHHHHHHHH---hhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILG---SLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~---~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..+++|.+   ++..         ...+-+-++|+.|+|||+||+.+.+...
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            567898887766644   4432         1356688999999999999999998765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00025  Score=53.74  Aligned_cols=36  Identities=22%  Similarity=0.510  Sum_probs=28.2

Q ss_pred             HHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          144 KEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       144 ~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..+++.+.....+||.+.|-||+||||++-.+-...
T Consensus         9 ~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2           9 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             HHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            445566667889999999999999999877665543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00068  Score=50.82  Aligned_cols=47  Identities=28%  Similarity=0.341  Sum_probs=34.7

Q ss_pred             ccccchHHHHHHHHH---hhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILG---SLSN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~---~L~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..++.|-+   .+..         ...+-|-++|+.|+|||+||+.+.+...
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcC
Confidence            467888877655443   3332         1346689999999999999999998654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.02  E-value=0.00025  Score=51.94  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=24.8

Q ss_pred             cCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          151 SNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       151 ~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++..||-+.|+.|+||||||+.+.+..
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34577899999999999999999998653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.99  E-value=0.00014  Score=53.01  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|+.|+|||||.+.+..-
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcc
Confidence            4568999999999999999999864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.97  E-value=0.00048  Score=51.65  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=32.4

Q ss_pred             cccchHHHHHHHHHhhc-------C---CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          135 HFESRKSTLKEILGSLS-------N---HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       135 ~~~g~~~~~~~l~~~L~-------~---~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++|..++++.+++-+.       .   ...+-|-++|+.|+|||+||+.+.+...
T Consensus        10 ~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          10 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            35666565555544332       1   2356688999999999999999998755

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.92  E-value=0.00025  Score=53.10  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.++.-
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3468999999999999999999853

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.92  E-value=0.00094  Score=52.06  Aligned_cols=39  Identities=13%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             HHHHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          142 TLKEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       142 ~~~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      ....+++.+.  .++..+|+|.|++|+|||||...+.....
T Consensus        36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~   76 (323)
T d2qm8a1          36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT   76 (323)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence            3445555553  35688999999999999999999987643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00027  Score=52.61  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|+.|+|||||.+.+.--
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            4568999999999999999999853

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.87  E-value=0.00027  Score=52.57  Aligned_cols=25  Identities=16%  Similarity=0.367  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            4568999999999999999988753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.85  E-value=0.00027  Score=53.30  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||++.+..
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            456899999999999999999974

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.84  E-value=0.00031  Score=52.49  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|+.|+|||||.+.+.--
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            4568999999999999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0012  Score=51.63  Aligned_cols=38  Identities=21%  Similarity=0.290  Sum_probs=29.3

Q ss_pred             HHHHHhhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          144 KEILGSLS--NHNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       144 ~~l~~~L~--~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      .++++.|.  .++..+|+|+|.+|+|||||...+-.....
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            44555554  356889999999999999999998766543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00029  Score=52.77  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-..++|+|..|+|||||++.+..-
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999999863

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00025  Score=53.01  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.++--
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            3468999999999999999999854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00032  Score=53.76  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            4578999999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00031  Score=52.94  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-..++|+|..|+|||||++.+..
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            457999999999999999999985

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.80  E-value=0.00032  Score=53.09  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|+|||||++.+.-
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            456999999999999999999975

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.80  E-value=0.00057  Score=47.82  Aligned_cols=35  Identities=14%  Similarity=0.321  Sum_probs=26.8

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +..+..++.+...+ |.|+|.+|+|||||...+-++
T Consensus         4 ~~~~~~~~~~k~~k-I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           4 FTRIWRLFNHQEHK-VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHHTTSCEE-EEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCeEE-EEEECCCCCCHHHHHHHHhcC
Confidence            45566655555555 669999999999999998765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.79  E-value=0.00036  Score=52.13  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+++|+|+.|+|||||++.+..-
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCChHHHHHHHHHcC
Confidence            48899999999999999999964

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.79  E-value=0.00034  Score=52.45  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-..++|+|..|+|||||++.+..
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.0006  Score=51.41  Aligned_cols=47  Identities=23%  Similarity=0.309  Sum_probs=35.8

Q ss_pred             ccccchHHHHHHHHHhh----cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          134 IHFESRKSTLKEILGSL----SN---------HNFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L----~~---------~~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .++.|.+..+++|.+.+    ..         ...+-|-++|+.|+|||+||+.+.+...
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhC
Confidence            35778888877776653    22         1356788999999999999999998654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.71  E-value=0.0005  Score=49.19  Aligned_cols=26  Identities=15%  Similarity=0.385  Sum_probs=22.6

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +++..|+|+|..|+|||||.+.+.+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            34668999999999999999999863

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0011  Score=51.51  Aligned_cols=46  Identities=11%  Similarity=0.208  Sum_probs=36.0

Q ss_pred             ccccchHHHHHHHHHhhc-------C--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLS-------N--HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~-------~--~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.+...+.       +  ....++..+|+.|+|||.||+.+-.-.
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            457888888888766552       1  235588999999999999999998754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.00047  Score=51.49  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|+.|.|||||.+.+..-
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4569999999999999999999864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.66  E-value=0.0018  Score=47.22  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcC
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVS  194 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs  194 (204)
                      ...+-|+|..|+|||.|++.+++....+  ....++++.+
T Consensus        36 ~n~l~l~G~~G~GKTHLl~A~~~~~~~~--~~~~~~~~~~   73 (213)
T d1l8qa2          36 YNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD   73 (213)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHhccC--ccceEEechH
Confidence            4457899999999999999999986643  3445666543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.64  E-value=0.00038  Score=51.63  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||.+.+..-
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568999999999999999999863

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00063  Score=52.68  Aligned_cols=27  Identities=15%  Similarity=0.187  Sum_probs=24.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+-+|||.|..|+||||+|+.+.....
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            467999999999999999999988654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.0014  Score=47.85  Aligned_cols=48  Identities=15%  Similarity=0.032  Sum_probs=35.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCChHh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQIKK  201 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~  201 (204)
                      .-+++-|+|.+|+|||||+-++-.+.....    .-..++|+.....++...
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   84 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR   84 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHH
Confidence            356999999999999999988865543221    124688998887776543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.62  E-value=0.00053  Score=51.27  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|+.|.|||||.+.+.--
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3468999999999999999999864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0016  Score=47.27  Aligned_cols=42  Identities=10%  Similarity=0.236  Sum_probs=34.6

Q ss_pred             chHHHHHHHHHhhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          138 SRKSTLKEILGSLSNHN-FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~-~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +.+...+++.+.+..+. ...+-++|+.|+||||+|+.+.+..
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhc
Confidence            55667888888888766 4569999999999999999887643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.57  E-value=0.00051  Score=51.79  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|+.|.|||||++.+.--
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCC
Confidence            3468999999999999999999864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.001  Score=48.74  Aligned_cols=26  Identities=31%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+.||.++|+.|+||||.+-++...
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999997765555544

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00058  Score=50.72  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-.+++|+|..|.|||||.+.+..
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            456899999999999999999986

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.48  E-value=0.00085  Score=52.25  Aligned_cols=45  Identities=20%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             CccccchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          133 FIHFESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       133 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      -..++|.+..+..|.-.+...+..=+-++|..|+||||||+.+-.
T Consensus         6 f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_           6 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHH
T ss_pred             hhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHH
Confidence            356899987766554333332334578999999999999998864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.0037  Score=43.39  Aligned_cols=31  Identities=23%  Similarity=0.203  Sum_probs=26.7

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhccCC
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNN  183 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~  183 (204)
                      ....+|.+.|-=|+||||++|.+.+...+..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~   61 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG   61 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccccc
Confidence            3456999999999999999999999887653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.45  E-value=0.0005  Score=51.41  Aligned_cols=25  Identities=36%  Similarity=0.596  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-.+++|+|..|+|||||++.+..-
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            3469999999999999999999863

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.45  E-value=0.00096  Score=48.80  Aligned_cols=27  Identities=22%  Similarity=0.159  Sum_probs=17.0

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      +.+.||.++|+.|+||||.+-++-...
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999976554444443

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.44  E-value=0.002  Score=47.34  Aligned_cols=41  Identities=27%  Similarity=0.266  Sum_probs=33.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQT  196 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~  196 (204)
                      .-.++-|+|.+|+|||||+.++-.+..  ++...++|++...+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~--~~~~~~~~is~e~~   65 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEES   65 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSSC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhccccceeeccCC
Confidence            457999999999999999999998855  34667888887544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.43  E-value=0.0036  Score=45.99  Aligned_cols=47  Identities=26%  Similarity=0.216  Sum_probs=35.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccC----CCCceEEEEEcCCCCChHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGN----NLFEKVISAQVSQTPQIKK  201 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~  201 (204)
                      -+++-|+|.+|+|||||+-++..+....    ......+|+.....++...
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER   86 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHH
Confidence            4699999999999999999988764322    2245688888877776543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.41  E-value=0.0014  Score=45.75  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=24.1

Q ss_pred             HHHhhc-CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          146 ILGSLS-NHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       146 l~~~L~-~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +++++. .++..-|.++|.+|+|||||...+...
T Consensus         3 ~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             hHHhccccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344443 234445779999999999999998654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.35  E-value=0.00052  Score=51.78  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .-..++|+|..|+|||||++.+..
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHh
Confidence            456899999999999999999874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0012  Score=50.49  Aligned_cols=27  Identities=19%  Similarity=0.102  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+-+|||-|..|+|||||+..+.....
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHHH
Confidence            466999999999999999998876643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.27  E-value=0.0011  Score=46.40  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -|.++|.+|+|||||.+.+.+.
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.24  E-value=0.0025  Score=49.33  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=34.9

Q ss_pred             ccccchHHHHHHHHHhhc-------C--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          134 IHFESRKSTLKEILGSLS-------N--HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       134 ~~~~g~~~~~~~l~~~L~-------~--~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..++|.+..++.|...+.       +  ....++..+|+.|+|||.||+.+-+..
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            346788888877766542       1  234588999999999999999988764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0054  Score=44.90  Aligned_cols=47  Identities=19%  Similarity=0.122  Sum_probs=36.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhcc----CCCCceEEEEEcCCCCChH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKG----NNLFEKVISAQVSQTPQIK  200 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~  200 (204)
                      .-+++-|+|.+|+|||+||.++..+...    ...+..+.|+.....++..
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD   86 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHH
Confidence            3469999999999999999999865321    2246778999888777654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0014  Score=49.59  Aligned_cols=26  Identities=35%  Similarity=0.529  Sum_probs=23.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+-|-++|+.|.|||+||+.+.+...
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            45688999999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.01  Score=41.97  Aligned_cols=45  Identities=16%  Similarity=0.020  Sum_probs=31.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCC----CCceEEEEEcCCCCCh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNN----LFEKVISAQVSQTPQI  199 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~  199 (204)
                      -.++-|.|.+|+|||||+.++..+.....    .+....++........
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP   71 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHH
Confidence            46999999999999999999987643322    2344566655555443

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.75  E-value=0.0022  Score=44.71  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=23.2

Q ss_pred             HHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          147 LGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       147 ~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .+.|.. ..++ |.++|.+|+|||||.+.+.++
T Consensus         4 ~~~~~~~k~~k-IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_           4 LSKIFGNKEMR-ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             HHHHHTTCCEE-EEEEEETTSSHHHHHHHTTCC
T ss_pred             hhhhhCCCeEE-EEEECCCCCCHHHHHHHHhcC
Confidence            344443 4455 559999999999999999765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.72  E-value=0.0053  Score=48.45  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+-|-.+|+.|+|||.||+.+-..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhh
Confidence            4567899999999999999998654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.70  E-value=0.0069  Score=43.99  Aligned_cols=46  Identities=15%  Similarity=0.133  Sum_probs=32.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCC--------------CCceEEEEEcCCCCChH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNN--------------LFEKVISAQVSQTPQIK  200 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~--------------~F~~~~wv~vs~~~~~~  200 (204)
                      -.++-|.|.+|+|||||+.++..+.-..+              .-..+.|++....++..
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~   93 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE   93 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcCHH
Confidence            47999999999999999999986543221              12246788776655543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.67  E-value=0.002  Score=45.29  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=23.8

Q ss_pred             HHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          144 KEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       144 ~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ..+.+.|.. ..---|.++|..|+|||||.+.+.+.
T Consensus         5 ~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_           5 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             HHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            344444432 23334559999999999999998654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.002  Score=45.06  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ++..-|+|+|..++|||||.+.+..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            3566799999999999999998854

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.014  Score=41.80  Aligned_cols=59  Identities=10%  Similarity=-0.014  Sum_probs=39.7

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccC--CCCceEEEEE-cCCCCChHhh
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQAKGN--NLFEKVISAQ-VSQTPQIKKI  202 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~--~~F~~~~wv~-vs~~~~~~~i  202 (204)
                      .+-+.+++..+...-+-++|..|+||||+|..+-+.....  .|-|. .++. -+.+..++.|
T Consensus         3 ~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~-~~i~~~~~~I~Id~I   64 (198)
T d2gnoa2           3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI   64 (198)
T ss_dssp             HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH
T ss_pred             HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCE-EEEeCCcCCCCHHHH
Confidence            4455666667788999999999999999999988765432  23343 3333 2334455554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.52  E-value=0.0054  Score=45.07  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=25.6

Q ss_pred             HHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          143 LKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       143 ~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ++.|..+|.   -+...++|..|+|||||...+..+
T Consensus        86 ~~~L~~~l~---~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          86 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             HhhHHHHhc---CCeEEEECCCCCCHHHHHHhhcch
Confidence            455666663   256789999999999999999764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.39  E-value=0.0068  Score=45.12  Aligned_cols=44  Identities=18%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             ccchHHHHHHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          136 FESRKSTLKEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       136 ~~g~~~~~~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ++|....+.++.+.+..  ..-.-|-|.|..|+|||++|+.++...
T Consensus         2 ~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            45555555555555532  223346889999999999999998753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.38  E-value=0.015  Score=43.83  Aligned_cols=48  Identities=15%  Similarity=0.156  Sum_probs=38.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKIQ  203 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~iq  203 (204)
                      .-+++-|+|..|+||||||-++..+....+  ..++|+..-..|+.+.++
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g--~~~vyIDtE~~~~~e~a~  106 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEHALDPDYAK  106 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTT--CEEEEEESSCCCCHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCC--CEEEEEECCccCCHHHHH
Confidence            357999999999999999988887755442  468999999999877653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.37  E-value=0.0065  Score=47.02  Aligned_cols=27  Identities=37%  Similarity=0.489  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccC
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAKGN  182 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~  182 (204)
                      +++-++|.+|+|||.||+.+-.....+
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~  150 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGK  150 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCC
Confidence            455568999999999999999876533

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.36  E-value=0.0085  Score=47.16  Aligned_cols=29  Identities=21%  Similarity=0.070  Sum_probs=25.3

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ...+.+-++|++|+|||++|+.+.+....
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~  180 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGG  180 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            45679999999999999999999997663

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.012  Score=44.74  Aligned_cols=37  Identities=22%  Similarity=0.095  Sum_probs=31.2

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKG  181 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~  181 (204)
                      ++++.|.. ..-+-++|.|..|+|||||+..+.++...
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            67887775 46678999999999999999999987653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.018  Score=43.11  Aligned_cols=46  Identities=17%  Similarity=0.191  Sum_probs=37.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      -+++-|+|..|+|||||+-++.....-..  ..++|+.--.+|+....
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g--~~~vyidtE~~~~~~~a   99 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYA   99 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCC--CEEEEEccccccCHHHH
Confidence            46999999999999999999998765332  35899998888887654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.00  E-value=0.02  Score=43.04  Aligned_cols=47  Identities=17%  Similarity=0.137  Sum_probs=37.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCCChHhh
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTPQIKKI  202 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  202 (204)
                      .-+++-|+|..|+||||||-++.-...-..  -.++|+..-..|+.+..
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yiDtE~~~~~~~a  102 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPVYA  102 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCC--CEEEEEECCccCCHHHH
Confidence            356999999999999999999987754332  34899999888887654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.97  E-value=0.032  Score=42.06  Aligned_cols=52  Identities=23%  Similarity=0.339  Sum_probs=38.3

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      +.++.|.. ..-+-++|.|-.|+|||||+..+-++... .+=++++++-+.+..
T Consensus        57 raID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~-~~~~v~V~~~iGer~  109 (276)
T d2jdid3          57 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERT  109 (276)
T ss_dssp             HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTT-TCSSEEEEEEESCCH
T ss_pred             eeeeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHHHh-hCCCeEEEEEeccCh
Confidence            45665553 34556999999999999999999887432 234678888888764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.013  Score=43.68  Aligned_cols=25  Identities=32%  Similarity=0.464  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+.-|+|.+|+|||||+-++.-...
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5777999999999999988876643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.59  E-value=0.019  Score=42.71  Aligned_cols=39  Identities=38%  Similarity=0.610  Sum_probs=28.0

Q ss_pred             HHHHHHHHhhcCC--CccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          141 STLKEILGSLSNH--NFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       141 ~~~~~l~~~L~~~--~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..+.++.+.+.+.  +.--|.++|..|+|||||...++...
T Consensus        16 ~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          16 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            3444555555432  33467899999999999999999753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.30  E-value=0.015  Score=41.75  Aligned_cols=40  Identities=18%  Similarity=0.032  Sum_probs=26.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHH-HHHhccCCCCceEEEEEcCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEV-AGQAKGNNLFEKVISAQVSQ  195 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v-~~~~~~~~~F~~~~wv~vs~  195 (204)
                      .-.++-|.|..|+|||+||.++ ++.....  =..+.|++...
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~~--~~~~~~~s~e~   65 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEE   65 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCcccccccC
Confidence            3578999999999999999764 4433221  12355665543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.27  E-value=0.025  Score=42.14  Aligned_cols=37  Identities=27%  Similarity=0.144  Sum_probs=26.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEc
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQV  193 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~v  193 (204)
                      .++.|.|.+|+|||||+.++-.+.-....+. +++++.
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~-v~~~s~   72 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKK-VGLAML   72 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCC-EEEEES
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccc-eeEeee
Confidence            5788999999999999998876643333333 444443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.03  E-value=0.012  Score=45.47  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 046665          157 MIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       157 vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -|-|.|..|+|||||++.+.+.
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            3788999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.95  E-value=0.018  Score=46.55  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=21.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQAK  180 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~~  180 (204)
                      .+=|-++|+.|+|||.||+.+-.-..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC
Confidence            34588999999999999999987543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.0053  Score=43.05  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      .+..|+|..|+||||+...|+-
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3556789999999999999984

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.023  Score=42.93  Aligned_cols=32  Identities=25%  Similarity=0.568  Sum_probs=26.3

Q ss_pred             HHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          146 ILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       146 l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +++.+ ++.+.||+|+|.-+.||+||+..++..
T Consensus        24 ~l~~~-~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          24 ILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHcC-CCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            33433 456899999999999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.56  E-value=0.023  Score=39.92  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +-|.|.|..|+||||||-.+..+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45789999999999999887764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.39  E-value=0.041  Score=43.68  Aligned_cols=43  Identities=16%  Similarity=0.108  Sum_probs=32.2

Q ss_pred             cchHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          137 ESRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       137 ~g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .|.....-..+..+.....+.|-|.|+.|+||||.+..+.+..
T Consensus       140 LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            3554444444455666788999999999999999988888754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.18  E-value=0.012  Score=43.37  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      ++..++|..|+|||||...+..+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            44568899999999999999865

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.13  E-value=0.026  Score=39.71  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-|-|.|..|+||||||-.+...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45788999999999999887753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.95  E-value=0.032  Score=38.86  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      .-|-|.|..|+||||||-.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45789999999999999887764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.04  Score=43.11  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=19.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      -++.-|.|.+|.||||++..+...
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~  186 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAA  186 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHH
Confidence            468889999999999988766543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.058  Score=41.83  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCcHHHHHHHHHH
Q 046665          153 HNFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       153 ~~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ++++=|+|+|..|.|||||+-.+..
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHH
Confidence            4677799999999999999998864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.19  E-value=0.039  Score=43.80  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      --|+|+|..|+|||||...+..
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3489999999999999999985

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.05  E-value=0.084  Score=37.74  Aligned_cols=38  Identities=16%  Similarity=0.086  Sum_probs=29.9

Q ss_pred             HHHHHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          142 TLKEILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       142 ~~~~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      -+..+..+|.. .+-+.|.++|+++.|||++|..+.+-.
T Consensus        39 Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          39 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            44556666643 466899999999999999999888764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.81  E-value=0.042  Score=41.16  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      .--|+|+|++.+||+||+..+....
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEEecCccchhhhhhhhhccc
Confidence            4459999999999999999998753

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.17  E-value=0.098  Score=39.27  Aligned_cols=42  Identities=12%  Similarity=0.025  Sum_probs=30.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHHhccCCCCceEEEEEcCCCC
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQAKGNNLFEKVISAQVSQTP  197 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~~~~~~~F~~~~wv~vs~~~  197 (204)
                      .-+-++|+|-.|+|||+|+..+-.+..  .+-+.++++-+.+..
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~~~--~~~~v~V~~~iGer~  107 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILNQQ--GQNVICVYVAIGQKA  107 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHTCC--TTTCEEEEEEESCCH
T ss_pred             CCceEeeccCCCCChHHHHHHHHhhhc--ccCceeeeeeecchh
Confidence            345689999999999999988655433  335677888776654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.88  E-value=0.05  Score=40.69  Aligned_cols=17  Identities=29%  Similarity=0.270  Sum_probs=13.5

Q ss_pred             cEEEEEcCCCCcHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLV  172 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa  172 (204)
                      ..+-|.|.+|.||||.+
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            34678899999999753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.45  E-value=0.058  Score=40.70  Aligned_cols=29  Identities=17%  Similarity=0.190  Sum_probs=18.8

Q ss_pred             HHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHH
Q 046665          140 KSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLV  172 (204)
Q Consensus       140 ~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa  172 (204)
                      ..+..++++..    .+.+-|.|.+|+||||.+
T Consensus        13 ~~eQ~~~v~~~----~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          13 NKEQQEAVRTT----EGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CHHHHHHHHCC----SSCEEEEECTTSCHHHHH
T ss_pred             CHHHHHHHhCC----CCCEEEEecCCccHHHHH
Confidence            34445566532    234668899999999754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.36  E-value=0.19  Score=37.35  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             HHHHHhhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 046665          144 KEILGSLSN--HNFNMIGVYGMGGIGKTMLVKEVAGQA  179 (204)
Q Consensus       144 ~~l~~~L~~--~~~~vI~IvG~gGiGKTTLa~~v~~~~  179 (204)
                      ..+..+|..  +.-..+-++|.|+.||||++..+.+-.
T Consensus        91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            445556643  457789999999999999999998754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.00  E-value=0.072  Score=39.92  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      ++-.|+|..|+||||+...+.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4678999999999999988843

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.92  E-value=0.13  Score=40.06  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=18.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHH
Q 046665          155 FNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       155 ~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      .++-.|+|..|+||||+...|+
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3466799999999999999985

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=88.67  E-value=0.13  Score=40.42  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +-+.|+|..|+|||++++.+...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            45899999999999998766544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.14  E-value=0.28  Score=30.43  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +.+-|-++|.||+|.+.||+.+.+.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~   31 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNE   31 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhC
Confidence            4677899999999999999998864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.11  E-value=0.17  Score=37.02  Aligned_cols=22  Identities=23%  Similarity=0.185  Sum_probs=18.9

Q ss_pred             cE-EEEEcCCCCcHHHHHHHHHH
Q 046665          156 NM-IGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       156 ~v-I~IvG~gGiGKTTLa~~v~~  177 (204)
                      .+ |+|.|..+.|||||+..+..
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHH
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHH
Confidence            44 89999999999999998843

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=87.00  E-value=0.89  Score=32.85  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=31.8

Q ss_pred             chHHHHHHHHHhhcCCCccEEEEEcCCCCcHHHHHHHHH
Q 046665          138 SRKSTLKEILGSLSNHNFNMIGVYGMGGIGKTMLVKEVA  176 (204)
Q Consensus       138 g~~~~~~~l~~~L~~~~~~vI~IvG~gGiGKTTLa~~v~  176 (204)
                      ......++|.+.+..+.....-+.|--|+|||-++-...
T Consensus        59 ~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          59 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence            455677888888888888999999999999998665444

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.79  E-value=0.28  Score=36.86  Aligned_cols=34  Identities=18%  Similarity=0.055  Sum_probs=25.5

Q ss_pred             HHHHhhcC-CCccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          145 EILGSLSN-HNFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       145 ~l~~~L~~-~~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +.++.|.. ..-+-++|.|-.|+|||+|+..+-.+
T Consensus        57 raID~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          57 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            34555554 35567899999999999998877654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.40  E-value=0.22  Score=32.47  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=20.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAG  177 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~  177 (204)
                      +.++.-|++.-|.|||+++-..+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            467888899999999998876664

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.66  E-value=0.31  Score=35.41  Aligned_cols=25  Identities=20%  Similarity=0.149  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHHHH
Q 046665          154 NFNMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       154 ~~~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +-+++-|.|+.+.||||+.|.|-=.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHH
Confidence            4578999999999999999998754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=82.05  E-value=0.33  Score=36.97  Aligned_cols=19  Identities=32%  Similarity=0.670  Sum_probs=15.8

Q ss_pred             cEEEEEcCCCCcHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKE  174 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~  174 (204)
                      .|-...|..|.|||||.-.
T Consensus        15 ~valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             CEEEEEECTTSCHHHHTCB
T ss_pred             CEEEEEccCCCCccccccC
Confidence            5667889999999999753

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=81.91  E-value=0.37  Score=36.56  Aligned_cols=18  Identities=33%  Similarity=0.658  Sum_probs=15.1

Q ss_pred             cEEEEEcCCCCcHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVK  173 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~  173 (204)
                      .|-...|..|.|||||..
T Consensus        15 ~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             CEEEEECSTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            455688999999999984

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.57  E-value=0.56  Score=33.74  Aligned_cols=23  Identities=17%  Similarity=0.275  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 046665          156 NMIGVYGMGGIGKTMLVKEVAGQ  178 (204)
Q Consensus       156 ~vI~IvG~gGiGKTTLa~~v~~~  178 (204)
                      +++-|.|+...||||+.|.|-=.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            47889999999999999988743