Citrus Sinensis ID: 046668

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFWVVRKCW
Secondary Structure (PSIPRED)
cccEEEcccccccccccccHHccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccccccccccccccccccccccccccccEEccccccccEEEEEEEEEEccEEEEccccccEEEEEcccccccccccHHHHccccccccccccccccccccccHHcccccHHHHcccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccEEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEcccccccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEc
Coil and Loop (DISEMBL)
girilklgenhfsgeipdcWMNWLDLLVLNlgnnnftgnipiSLGMLSSLQslnlrknslsgqipasfqnCTKLVMldigenefvgnvptwIGIRFSSLMILNlrsnkfrgvlpnqlcgltslhvldladnhlsgsipkCISNISSMVtanfsigtdvqypsvstgkYVEDALLVLKGKAVEYNTILKLMRLIDLsknkfsgeipSEIMNLRALVSLDlscnsftgripnsigALESILSIDFsanqlygeipqsissLTFLSRLKLsnnnlsgkiplstqlqsfdpssftgnrlcgsplpnncfvaapaphneseddidgnddgdedevNWFYVSLALGFVVGFWFvmgplfvsrkWRSMYYHFLARLGDKNFWVVRKCW
Flexible Loop (DISEMBL)
girilklgenhfsgEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFWVVRKCW
Low Complexity Region (SEG)
GIRILKLGENHFSGEIPDCWMnwldllvlnlgnnnFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFlsrlklsnnnlsGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAPAPHneseddidgnddgdedeVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFWVVRKCW
Disordered region (IsUnstruct)
***ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLS*************************RLCGSPLPNNCFV**********************EVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFWVVRKC*
Disordered Region (DISOPRED)
GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLP***************************EVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFWVVRKCW
Disordered Region (DISEMBL)
GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFWVVRKCW
Disordered Region (DISPRO)
*IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFWVVRKCW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNFWVVRKCW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.908	0.408	0.340	6e-42
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.703	0.214	0.412	8e-42
Q9FL28	1173	LRR receptor-like serine/	no	no	0.813	0.264	0.352	7e-40
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.784	0.261	0.343	4e-38
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.706	0.215	0.389	8e-38
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.923	0.339	0.321	6e-36
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.766	0.272	0.323	1e-35
O22938	890	Leucine-rich repeat recep	no	no	0.755	0.323	0.322	3e-35
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.795	0.266	0.334	3e-34
Q00874	372	DNA-damage-repair/tolerat	no	no	0.645	0.661	0.319	6e-34

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 185/358 (51%), Gaps = 12/358 (3%)

Query: 5   LKLGENHFSGEIPDCWMNWL-DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
           L L  N FSG IP C  N+   +  LNLG+NNF+G +P      + L SL++  N L G+
Sbjct: 472 LDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGK 531

Query: 64  IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLC--GLT 121
            P S  NC  L ++++  N+     P+W+     SL +LNLRSNKF G L ++    G  
Sbjct: 532 FPKSLINCKALELVNVESNKIKDIFPSWLE-SLPSLHVLNLRSNKFYGPLYHRHASIGFQ 590

Query: 122 SLHVLDLADNHLSGSIPKC-ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           SL ++D++ N+ SG++P    SN   M T    +   +         Y  +  +V KG  
Sbjct: 591 SLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEMEMVNKGVD 650

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
           + +  I +  R ID S NK +G IP  +  L+ L  L+LS N+FT  IP  +  L  + +
Sbjct: 651 MSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLET 710

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LCGSP 299
           +D S N+L G+IPQ +++L+FLS +  S+N L G +P  TQ Q    SSF  N  L G  
Sbjct: 711 LDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG-- 768

Query: 300 LPNNCF-VAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSR 356
           L + C    A  P ++  +D+    + +E+  NW   ++A G  V    V+G  + S 
Sbjct: 769 LEDICRDTGALNPTSQLPEDL---SEAEENMFNWVAAAIAYGPGVLCGLVIGHFYTSH 823

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  171 bits (433), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 158/296 (53%), Gaps = 28/296 (9%)

Query: 9   ENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASF 68
           EN F G+IP       +L  L LG N FTG IP + G +S L  L++ +NSLSG IP   
Sbjct: 585 ENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVEL 644

Query: 69  QNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDL 128
             C KL  +D+  N   G +PTW+G +   L  L L SNKF G LP ++  LT++  L L
Sbjct: 645 GLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFL 703

Query: 129 ADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILK 188
             N L+GSIP+ I N+ ++   N      +  P  ST                    I K
Sbjct: 704 DGNSLNGSIPQEIGNLQALNALNLE-ENQLSGPLPST--------------------IGK 742

Query: 189 LMRLIDL--SKNKFSGEIPSEIMNLRALVS-LDLSCNSFTGRIPNSIGALESILSIDFSA 245
           L +L +L  S+N  +GEIP EI  L+ L S LDLS N+FTGRIP++I  L  + S+D S 
Sbjct: 743 LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSH 802

Query: 246 NQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LCGSPL 300
           NQL GE+P  I  +  L  L LS NNL GK  L  Q   +   +F GN  LCGSPL
Sbjct: 803 NQLVGEVPGQIGDMKSLGYLNLSYNNLEGK--LKKQFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 177/321 (55%), Gaps = 11/321 (3%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +RIL++  N  +G IP    N  DL +L L +N FTG IP  +  L+ LQ L +  N L 
Sbjct: 481 LRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLE 540

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G IP    +   L +LD+  N+F G +P     +  SL  L+L+ NKF G +P  L  L+
Sbjct: 541 GPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS-KLESLTYLSLQGNKFNGSIPASLKSLS 599

Query: 122 SLHVLDLADNHLSGSIP-KCISNISSM-VTANFS--IGTDVQYPSVSTGKYVEDALL--- 174
            L+  D++DN L+G+IP + ++++ +M +  NFS  + T      +   + V++  L   
Sbjct: 600 LLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNN 659

Query: 175 VLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMN-LRALVSLDLSCNSFTGRIPNSIG 233
           +  G         K +  +D S+N  SG IP E+   +  ++SL+LS NSF+G IP S G
Sbjct: 660 LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFG 719

Query: 234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN 293
            +  ++S+D S+N L GEIP+S+++L+ L  LKL++NNL G +P S   ++ + S   GN
Sbjct: 720 NMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGN 779

Query: 294 R-LCGSPLP-NNCFVAAPAPH 312
             LCGS  P   C +   + H
Sbjct: 780 TDLCGSKKPLKPCTIKQKSSH 800

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 164/326 (50%), Gaps = 27/326 (8%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +R + L  N+ +G IP    N   L       NN  G IP  +G L +L+ L L  N L+
Sbjct: 401 LRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLT 460

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G+IP  F NC+ +  +    N   G VP   GI  S L +L L +N F G +P +L   T
Sbjct: 461 GEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFGI-LSRLAVLQLGNNNFTGEIPPELGKCT 519

Query: 122 SLHVLDLADNHLSGSIP---------KCISNISSMVTANF---------SIGTDVQYPSV 163
           +L  LDL  NHL+G IP         K +S + S  T  F          +G  V++  +
Sbjct: 520 TLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGI 579

Query: 164 STGKYVE-------DALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVS 216
              + ++       D   +  G  +   T  + +  +DLS N+  G+IP EI  + AL  
Sbjct: 580 RPERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQV 639

Query: 217 LDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKI 276
           L+LS N  +G IP +IG L+++   D S N+L G+IP+S S+L+FL ++ LSNN L+G I
Sbjct: 640 LELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPI 699

Query: 277 PLSTQLQSFDPSSFTGNR-LCGSPLP 301
           P   QL +   + +  N  LCG PLP
Sbjct: 700 PQRGQLSTLPATQYANNPGLCGVPLP 725

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 114/293 (38%), Positives = 150/293 (51%), Gaps = 24/293 (8%)

Query: 10  NHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQ 69
           N F  EIP    N  +L  L LG N  TG IP +LG +  L  L++  N+L+G IP    
Sbjct: 585 NGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLV 644

Query: 70  NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLA 129
            C KL  +D+  N   G +P W+G + S L  L L SN+F   LP +L   T L VL L 
Sbjct: 645 LCKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLD 703

Query: 130 DNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKL 189
            N L+GSIP+ I N+ ++   N            + GK                   L  
Sbjct: 704 GNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGK-------------------LSK 744

Query: 190 MRLIDLSKNKFSGEIPSEIMNLRALVS-LDLSCNSFTGRIPNSIGALESILSIDFSANQL 248
           +  + LS+N  +GEIP EI  L+ L S LDLS N+FTG IP++IG L  + ++D S NQL
Sbjct: 745 LYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQL 804

Query: 249 YGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LCGSPL 300
            GE+P S+  +  L  L +S NNL GK  L  Q   +   SF GN  LCGSPL
Sbjct: 805 TGEVPGSVGDMKSLGYLNVSFNNLGGK--LKKQFSRWPADSFLGNTGLCGSPL 855

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  151 bits (382), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 130/404 (32%), Positives = 190/404 (47%), Gaps = 52/404 (12%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +R+L L  N  SG I   +  + DL VL+L +N+F+G +P SLG    ++ L+L KN   
Sbjct: 306 LRVLDLRNNSLSGSINLNFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNEFR 365

Query: 62  GQIPASFQN--------------------------CTKLVMLDIGENEFVGNVPTWIGIR 95
           G+IP +F+N                          C  L  L + +N     +P  +   
Sbjct: 366 GKIPDTFKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIPNNV-TG 424

Query: 96  FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIG 155
           F +L IL L +   RG +P+ L     L VLDL+ NH  G+IP  I  + S+   +FS  
Sbjct: 425 FDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPHWIGKMESLFYIDFSNN 484

Query: 156 TDVQYPSVS------------TGKYVEDA----LLVLKGKA---VEYNTILKLMRLIDLS 196
           T      V+            T   + D+    L V + K+   + YN + +    I L+
Sbjct: 485 TLTGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSSNGLPYNQVSRFPPSIYLN 544

Query: 197 KNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI 256
            N+ +G I  EI  L+ L  LDLS N+FTG IP+SI  L+++  +D S N LYG IP S 
Sbjct: 545 NNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSF 604

Query: 257 SSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAP---APHN 313
            SLTFLSR  ++ N L+G IP   Q  SF  SSF GN      + + C V       P  
Sbjct: 605 QSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLCRAIDSPCDVLMSNMLNPKG 664

Query: 314 ESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRK 357
            S  + +G   G    +    +SLA+G  +    ++  L +SRK
Sbjct: 665 SSRRNNNGGKFG-RSSIVVLTISLAIGITLLLSVIL--LRISRK 705

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 177/349 (50%), Gaps = 57/349 (16%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
           L+L +N F+G+IP    N   L+ L L  N  +G+IP  +G L SLQS  L +NS+SG I
Sbjct: 337 LQLSDNMFTGQIPWELSNCSSLIALQLDKNKLSGSIPSQIGNLKSLQSFFLWENSISGTI 396

Query: 65  PASFQNCTKLVMLD---------------------------------------------- 78
           P+SF NCT LV LD                                              
Sbjct: 397 PSSFGNCTDLVALDLSRNKLTGRIPEELFSLKRLSKLLLLGNSLSGGLPKSVAKCQSLVR 456

Query: 79  --IGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS 136
             +GEN+  G +P  IG    +L+ L+L  N F G LP ++  +T L +LD+ +N+++G 
Sbjct: 457 LRVGENQLSGQIPKEIG-ELQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHNNYITGD 515

Query: 137 IPKCISNISSMVTAN-----FSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMR 191
           IP  + N+ ++   +     F+    + + ++S    +     +L G+  +    L+ + 
Sbjct: 516 IPAQLGNLVNLEQLDLSRNSFTGNIPLSFGNLSYLNKLILNNNLLTGQIPKSIKNLQKLT 575

Query: 192 LIDLSKNKFSGEIPSEIMNLRAL-VSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG 250
           L+DLS N  SGEIP E+  + +L ++LDLS N+FTG IP +   L  + S+D S+N L+G
Sbjct: 576 LLDLSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGNIPETFSDLTQLQSLDLSSNSLHG 635

Query: 251 EIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN-RLCGS 298
           +I + + SLT L+ L +S NN SG IP +   ++   +S+  N  LC S
Sbjct: 636 DI-KVLGSLTSLASLNISCNNFSGPIPSTPFFKTISTTSYLQNTNLCHS 683

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 163/316 (51%), Gaps = 28/316 (8%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +++L L +N  +GE+P+       L  + +GNN   G IP ++G +S L      KN+LS
Sbjct: 232 LKVLVLTQNRLTGELPEAVGICSGLSSIRIGNNELVGVIPRTIGNISGLTYFEADKNNLS 291

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G+I A F  C+ L +L++  N F G +PT +G +  +L  L L  N   G +P    G  
Sbjct: 292 GEIVAEFSKCSNLTLLNLAANGFAGTIPTELG-QLINLQELILSGNSLFGEIPKSFLGSG 350

Query: 122 SLHVLDLADNHLSGSIPK---CISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG 178
           +L+ LDL++N L+G+IPK    +  +  ++    SI  D+ +                  
Sbjct: 351 NLNKLDLSNNRLNGTIPKELCSMPRLQYLLLDQNSIRGDIPH------------------ 392

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRAL-VSLDLSCNSFTGRIPNSIGALES 237
              E    +KL++L  L +N  +G IP EI  +R L ++L+LS N   G +P  +G L+ 
Sbjct: 393 ---EIGNCVKLLQL-QLGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLDK 448

Query: 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LC 296
           ++S+D S N L G IP  +  +  L  +  SNN L+G +P+    Q    SSF GN+ LC
Sbjct: 449 LVSLDVSNNLLTGSIPPLLKGMMSLIEVNFSNNLLNGPVPVFVPFQKSPNSSFLGNKELC 508

Query: 297 GSPLPNNCFVAAPAPH 312
           G+PL ++C  +    H
Sbjct: 509 GAPLSSSCGYSEDLDH 524

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 164/335 (48%), Gaps = 32/335 (9%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
            +++L LG N FSG +P   +N   L  LNLG NN  G+ P+ L  L+SL  L+L  N  
Sbjct: 405 ALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRF 464

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
           SG +P S  N + L  L++  N F G +P  +G  F  L  L+L      G +P +L GL
Sbjct: 465 SGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLF-KLTALDLSKQNMSGEVPVELSGL 523

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFS-------IGTDVQYPSVSTGKYVED-- 171
            ++ V+ L  N+ SG +P+  S++ S+   N S       I     +  +     + D  
Sbjct: 524 PNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNH 583

Query: 172 -------------ALLVLK-------GKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNL 211
                        AL VL+       G      + L  ++++DL +N  SGEIP EI   
Sbjct: 584 ISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQS 643

Query: 212 RALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF-LSRLKLSNN 270
            +L SL L  N  +G IP S   L ++  +D S N L GEIP S++ ++  L    +S+N
Sbjct: 644 SSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSN 703

Query: 271 NLSGKIPLSTQLQSFDPSSFTGN-RLCGSPLPNNC 304
           NL G+IP S   +  + S F+GN  LCG PL   C
Sbjct: 704 NLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRC 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score =  145 bits (365), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 144/297 (48%), Gaps = 51/297 (17%)

Query: 12  FSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNC 71
            +GEIP C  +   L +L+L  N  TG IP  +G LS L  LNL +N +SG+IPAS  + 
Sbjct: 123 ITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSL 182

Query: 72  TKLVMLDIGENEFVGNVPTWIGIRFSSLMILN---LRSNKFRGVLPNQLCGLTSLHVLDL 128
            +L  L++ EN   G +P      F SL +L+   L  N+  G +P  + G+  L  LDL
Sbjct: 183 IELKHLELTENGITGVIPA----DFGSLKMLSRVLLGRNELTGSIPESISGMERLADLDL 238

Query: 129 ADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILK 188
           + NH+ G IP+ + N                                           +K
Sbjct: 239 SKNHIEGPIPEWMGN-------------------------------------------MK 255

Query: 189 LMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQL 248
           ++ L++L  N  +G IP  +++   L   +LS N+  G IP+  G+   ++S+D S N L
Sbjct: 256 VLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSL 315

Query: 249 YGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LCGSPLPNNC 304
            G IP S+SS  F+  L +S+N L G+IP        + +SF+ N+ LCG PL  +C
Sbjct: 316 SGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPLTTSC 372

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
255543959	602	serine-threonine protein kinase, plant-t	0.965	0.611	0.553	1e-110
224072885	1024	predicted protein [Populus trichocarpa]	0.960	0.357	0.556	1e-110
255547794	909	serine-threonine protein kinase, plant-t	0.971	0.407	0.519	1e-101
255581850	1082	leucine-rich repeat receptor protein kin	0.979	0.344	0.513	1e-100
209970607	1045	M18S-3Ap [Malus floribunda]	0.976	0.355	0.522	1e-100
255543977	1075	serine/threonine-protein kinase bri1, pu	0.963	0.341	0.524	1e-98
209970603	1038	AM19-5p [Malus floribunda]	0.976	0.358	0.510	2e-96
255539443	1054	serine-threonine protein kinase, plant-t	0.937	0.338	0.518	2e-96
315436720	1020	verticillium wilt resistance-like protei	0.963	0.359	0.514	7e-96
350284751	980	receptor-like protein [Malus baccata]	0.973	0.378	0.508	4e-95

>gi|255543959|ref|XP_002513042.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548053|gb|EEF49545.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/376 (55%), Positives = 277/376 (73%), Gaps = 8/376 (2%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           + +L LG+NH SGE+PDCWM+W  L+V+NL NNN +G IP S+G LS L+SL+LR N+L+
Sbjct: 230 LEVLDLGDNHLSGELPDCWMSWDGLVVINLSNNNLSGTIPRSIGGLSRLESLHLRNNTLT 289

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G+IP S +NCT L  LD+G+N+ VGN+P WIG  F  ++IL+LRSNKF+G +P +LC ++
Sbjct: 290 GEIPPSLRNCTGLSTLDLGQNQLVGNIPRWIGETFPDMVILSLRSNKFQGDVPKKLCLMS 349

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
           SL++LDLADN+LSG+IPKC++N S+MV+ + SIG  ++    S+  + E   LV+KGK  
Sbjct: 350 SLYILDLADNNLSGTIPKCLNNFSAMVSRDDSIGMLLE-GDASSWPFYESMFLVMKGKMD 408

Query: 182 EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
            Y++ILK +R IDLSKNK SGEIP E ++L+ L SL+LS N  TGRIP  IG +ES+ S+
Sbjct: 409 GYSSILKFVRSIDLSKNKLSGEIPEETISLKGLQSLNLSHNLLTGRIPTDIGDMESLESL 468

Query: 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LCGSPL 300
           DFS NQL+GEIP+S++ LTFLS L LS NNL+G+IP  TQLQSF   SF GN+ LCG P+
Sbjct: 469 DFSQNQLFGEIPRSMAKLTFLSFLNLSFNNLTGRIPTGTQLQSFSSFSFKGNKELCGPPV 528

Query: 301 PNNCFVAAPAPHNESEDDIDGN-DDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWR 359
             NC   +  P       IDG  DD +  EVNWFYVS+ALGFVVGFW   GPL ++R+WR
Sbjct: 529 TMNCSGDSELPGT-----IDGRGDDQNGQEVNWFYVSVALGFVVGFWGAFGPLVLNRRWR 583

Query: 360 SMYYHFLARLGDKNFW 375
            +Y+ FL  L DK++W
Sbjct: 584 QVYFRFLDSLWDKSWW 599

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/374 (55%), Positives = 262/374 (70%), Gaps = 8/374 (2%)

Query: 2    IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            +++L LGEN  SG IPDCW +W  L+ + L NN  +GNIP S+G LS L+SL++R +SLS
Sbjct: 656  MQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNKLSGNIPDSIGALSLLESLHIRNSSLS 715

Query: 62   GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
            G++P S +NCTKL+ LD+ ENE VG++P WIG RFSS+++LN+R+NKF G +P +LC L 
Sbjct: 716  GKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMVVLNMRANKFHGRIPRELCNLA 775

Query: 122  SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
            SL +LDLA N LS SIP C + +S+M T N S+G        ST    ++ LLV+KGK V
Sbjct: 776  SLQILDLAHNRLSWSIPTCFNKLSAMATRNDSLGKIYLDSGSST---FDNVLLVMKGKVV 832

Query: 182  EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
            EY+TILK +R IDLS N   GEIP E+  L  L SL+LS NS TGRIP  IG+L  + S+
Sbjct: 833  EYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNLSQNSLTGRIPEGIGSLRYLESM 892

Query: 242  DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLP 301
            DFS NQL GEIPQS+S LTFLS L LS+N L G+IP  TQLQSF PSSF+GN LCG PL 
Sbjct: 893  DFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSGTQLQSFGPSSFSGNELCGPPLS 952

Query: 302  NNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSM 361
             NC V     H E E + DGN         WFYVS+ LGF+VGFW V+GPL  +R+WR +
Sbjct: 953  KNCSVDNKF-HVEHEREEDGNGLKGR----WFYVSMVLGFIVGFWGVVGPLMFNRRWRYV 1007

Query: 362  YYHFLARLGDKNFW 375
            YYHFL RL D+ +W
Sbjct: 1008 YYHFLDRLRDQIWW 1021

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547794|ref|XP_002514954.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223546005|gb|EEF47508.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/381 (51%), Positives = 259/381 (67%), Gaps = 11/381 (2%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +R++ L  N  SG+I DCW +W +L  + L NNNF+GNIP S+G L+ L+SL+LR NSLS
Sbjct: 536 MRLINLDNNFLSGQIRDCWSSWSNLEYIRLSNNNFSGNIPRSIGTLTFLKSLHLRNNSLS 595

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G+IP S ++CT LV LD+GEN+ +G++P W+G  F S+  LNLR NKF G +P +LC L 
Sbjct: 596 GEIPLSLRDCTSLVSLDLGENQLIGHIPPWMGASFPSMAFLNLRENKFHGHIPPELCQLA 655

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFS---IGTDVQYPSVSTGKYVEDALLVLKG 178
           SL +LDLA N L+ +IP CI  +S+M T+N +    G    Y S S     + A +V KG
Sbjct: 656 SLQILDLAHNDLARTIPSCIDKLSAMTTSNPAASFYGYRSLYASAS-----DYATIVSKG 710

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
           + VEY +IL  ++ +DLS N  SG+IP  +  L  L SL+LS N  +GRIP  IGA+  +
Sbjct: 711 RIVEYFSILGFVKSLDLSGNNLSGDIPEVLTKLIGLQSLNLSDNLLSGRIPEDIGAMVEV 770

Query: 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LCG 297
            +IDFS NQL+GEIPQS++ LT+LS L LS+NNLSG IP  TQLQSF+ SSFTGN+ LCG
Sbjct: 771 EAIDFSQNQLFGEIPQSMTKLTYLSDLNLSDNNLSGTIPTGTQLQSFNASSFTGNKGLCG 830

Query: 298 SPLPNNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRK 357
            PL NNC V    P  ES ++   +D G   EVN FYVS+ALGF+VGFW   GPL V+R+
Sbjct: 831 PPLTNNCTVPGVQPRTESSNENRKSDGG--FEVNGFYVSMALGFIVGFWGAFGPLVVNRQ 888

Query: 358 WRSMYYHFLARLGDKNFWVVR 378
           WR  Y+HFL  L DK  W +R
Sbjct: 889 WRHAYFHFLDHLWDKVRWGLR 909

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/378 (51%), Positives = 261/378 (69%), Gaps = 5/378 (1%)

Query: 2    IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            I +L LGEN FSGEIPDCWMNW    V+ L NN F+GNIP S+G LS L  LN+R N+LS
Sbjct: 695  INVLNLGENLFSGEIPDCWMNWNYTNVIRLSNNYFSGNIPESIGTLSELSVLNIRNNNLS 754

Query: 62   GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
            G++P S ++CT L +LD+  NE  G + TW+G  F   +ILNLR NKF G +P +LCG+T
Sbjct: 755  GEMPISLKHCTSLQVLDLSGNELSGEITTWMGQHFQGTLILNLRGNKFHGFIPEELCGMT 814

Query: 122  SLHVLDLADNHLSGSIPKCISNISSMVTA-NFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
            +L +LD A+N+L+G+IP+CI+N +++++  ++     V      T  Y E +L+   GK 
Sbjct: 815  ALVILDFANNNLNGTIPRCINNFTALLSGTSYLKDGKVLVDYGPTLTYSESSLIERNGKL 874

Query: 181  VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
            VEY+T L  +R +D S NK SGEIP E+ +LR L+ L+LS NS TGRIP +IGA++++  
Sbjct: 875  VEYSTTLGFVRSLDFSNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRIPENIGAMKALQI 934

Query: 241  IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPL 300
            +DFS NQL GEIPQS+SSLTFL+ L LS+N LSG IP STQLQSFD SSF+GN LCG PL
Sbjct: 935  LDFSRNQLSGEIPQSMSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSSSFSGNNLCGPPL 994

Query: 301  PNNCFVAAPAPHNESEDDIDGNDDGDEDEVNW--FYVSLALGFVVGFWFVMGPLFVSRKW 358
              +C      P  E     DG  +G  + ++W  FYVS+A GFV+GFW V+GPL  +++W
Sbjct: 995  TQSCSGDGEKPDIEKRTTEDGG-NGSPEAIDWFYFYVSIAPGFVIGFWVVVGPLAFNKRW 1053

Query: 359  RSMYYHFLARLGDKNFWV 376
            R +Y++FL  L +K  WV
Sbjct: 1054 RRLYFNFLEDLWNK-IWV 1070

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/381 (52%), Positives = 252/381 (66%), Gaps = 9/381 (2%)

Query: 2    IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            +  L LG N  SG++PDCWM+W  L  LNL NNN TGN+P+S+G L  L+SL+LR N L 
Sbjct: 665  LHFLHLGNNLLSGKVPDCWMSWQYLSFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLY 724

Query: 62   GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
            G++P S QNCT+L ++D+GEN F G++P WIG   S L ILNLRSNKF G +PN++C LT
Sbjct: 725  GELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSLSELQILNLRSNKFEGDIPNEVCYLT 784

Query: 122  SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYV-----EDALLVL 176
            SL +LDLA N LSG IP+C  N+S+M  A+FS   D     +  G  V       A+LV 
Sbjct: 785  SLQILDLAHNKLSGMIPRCFHNLSAM--ADFSESRDASVYVILNGISVPLSVTAKAILVT 842

Query: 177  KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE 236
            KG+ +EY  ILK ++ +DLS N   GEIP E+ +L AL SL+LS N FTGRIP+ IG + 
Sbjct: 843  KGREMEYGKILKFVKFMDLSCNFMYGEIPEELTDLLALKSLNLSNNHFTGRIPSKIGNMA 902

Query: 237  SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLC 296
             + S+DFS NQL GEIPQS+++LTFLS L LSNNNL+G+IP STQLQS D SSF GN LC
Sbjct: 903  QLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSNNNLTGRIPKSTQLQSLDQSSFVGNELC 962

Query: 297  GSPLPNNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSR 356
            G+PL  NC      P    E D  G  +  EDE  WFYVSL +GF  GFW V+G L V+ 
Sbjct: 963  GAPLNKNCSENGVIPPPTVEHDGGGGYNLLEDE--WFYVSLGVGFFTGFWIVLGSLLVNM 1020

Query: 357  KWRSMYYHFLARLGDKNFWVV 377
             W  +    L R+  K + V+
Sbjct: 1021 PWSILLSQLLNRIVLKMYHVI 1041

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/383 (52%), Positives = 250/383 (65%), Gaps = 16/383 (4%)

Query: 2    IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            + +L LG N  SGEIPDCW++W  L  +NL NN FTGNIP S+G LS L+S++   N LS
Sbjct: 697  MEVLNLGGNLLSGEIPDCWLSWQSLTAINLSNNKFTGNIPKSIGTLSFLESVHFANNDLS 756

Query: 62   GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
            G IP S QNC KL  LD   N+ VG +P+WIG     ++IL LR NK  G +P ++C + 
Sbjct: 757  GDIPLSIQNCRKLFTLDFSGNKLVGKIPSWIGKSIPDMIILILRGNKLHGQIPEEICRMA 816

Query: 122  SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGK---YVEDALLVLKG 178
            SL +LDLADN+ S  IP C SN S MV  N S G+ + +   + G     ++ A+LV+KG
Sbjct: 817  SLQILDLADNNFSSMIPSCFSNFSGMVKVNDSFGS-LTFDQSNVGPSPILIDSAILVIKG 875

Query: 179  KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
            +  EY+TIL  ++ IDLS N  SGEIP  I +L  L SL  S NS TGRIP  IGA++S+
Sbjct: 876  RVAEYSTILGFVKAIDLSNNNLSGEIPMNITSLVGLQSLSFSQNSLTGRIPKDIGAMQSL 935

Query: 239  LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGS 298
             SIDFS N L+GEIP+SISSLTFLS L LSNN L+GKIP  TQL+ FDPSSF  N LCG 
Sbjct: 936  ESIDFSQNHLFGEIPESISSLTFLSHLNLSNNKLTGKIPSGTQLRGFDPSSFMDNDLCGP 995

Query: 299  PLPNNC----FVAAPAPHNESEDDIDGNDDGDEDEVNWFY--VSLALGFVVGFWFVMGPL 352
            PLP NC     + AP    E E+D +G       EV+WFY  VS+A GFVVGFW V+GPL
Sbjct: 996  PLPLNCSKEGILHAPDDEKEREEDENG------FEVDWFYFFVSIAPGFVVGFWLVVGPL 1049

Query: 353  FVSRKWRSMYYHFLARLGDKNFW 375
              +R+WR  Y+ FL  L DK  W
Sbjct: 1050 CFNRRWRFAYFRFLYDLWDKICW 1072

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/376 (51%), Positives = 255/376 (67%), Gaps = 4/376 (1%)

Query: 4    ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
            +L LG N  SG+IPDCWMNW +L VLNL NN+ TGN+P+SLG L  L+SL+LR N L G+
Sbjct: 661  VLDLGNNLLSGKIPDCWMNWQELEVLNLENNHLTGNVPMSLGYLQRLRSLHLRNNHLDGE 720

Query: 64   IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL 123
            +P S QNCT L +LD+G N FVG++P WIG   S L ILNLRSN+F+G +P ++C L SL
Sbjct: 721  LPHSLQNCTSLSILDLGGNGFVGSIPIWIGKSLSELQILNLRSNEFKGDIPYEVCYLKSL 780

Query: 124  HVLDLADNHLSGSIPKCISNISSM--VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
             +LDLA N LSG+  +C  N+S+M  ++ +FS  T   + S  +  ++E+A+LV KG+ +
Sbjct: 781  QILDLARNKLSGTTSRCFHNLSAMAILSESFSPTTFQMWSSAGSFSFLENAILVTKGREM 840

Query: 182  EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
            EY+ IL  ++ +DLS N  SGEIP  + ++ AL SL+LS N FTGRIP+ IG +  + S+
Sbjct: 841  EYSKILGFVKSMDLSCNFLSGEIPEGLTSVLALQSLNLSNNRFTGRIPSKIGNMVRLESL 900

Query: 242  DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLP 301
            DFS N+L+G IP S+++LTFLS L LS NNL+G+IP STQLQSF+ SSF GN LCG PL 
Sbjct: 901  DFSMNELHGGIPPSMTTLTFLSYLNLSYNNLTGRIPESTQLQSFNQSSFVGNELCGRPLN 960

Query: 302  NNCFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSM 361
            NNC      P  + E D  G     ED+  WFYVSL LGF  GFW V+G L V+  W  +
Sbjct: 961  NNCSANGVKPPPKVEQDGGGGYYLLEDK--WFYVSLGLGFFTGFWIVLGSLLVNMPWSML 1018

Query: 362  YYHFLARLGDKNFWVV 377
                L R+  K + V+
Sbjct: 1019 LSGLLNRIVLKLYHVI 1034

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539443|ref|XP_002510786.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549901|gb|EEF51388.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/378 (51%), Positives = 258/378 (68%), Gaps = 21/378 (5%)

Query: 2    IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            +RIL LGEN  SGEIPDCWMNW  L V+ LGNNN TG IP S+G+L +L+SL LRKNSLS
Sbjct: 649  LRILHLGENQLSGEIPDCWMNWKSLTVIKLGNNNLTGKIPSSIGVLWNLRSLQLRKNSLS 708

Query: 62   GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
            G+IP S  NCT+L+ LD+  N+FVG VP W+G  F  L+ L+LRSN+  G +P+++C L+
Sbjct: 709  GEIPMSLGNCTRLLTLDLAANDFVGKVPDWLGGSFPELLALSLRSNQLTGEIPSEICRLS 768

Query: 122  SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKY------VEDALLV 175
            SL +LD A N+LSG++PKCI+N++SM T      T + Y   STG Y      +E+A +V
Sbjct: 769  SLQILDFAGNNLSGTVPKCIANLTSMTTVQPR--TKIFYS--STGYYSLVEIFLENAYVV 824

Query: 176  LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235
             KGK VEY++IL L++ +DLS NK SGEIP+E+  L  L+SL+LS N  TG+IPN+IG +
Sbjct: 825  TKGKEVEYDSILTLVKSMDLSSNKISGEIPAELTALLGLMSLNLSGNDLTGQIPNNIGDM 884

Query: 236  ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG-NR 294
              + S+D S NQ+ G IP S++   FL+ L LS N+LSG+IP STQLQS D SSF G NR
Sbjct: 885  PVLESLDLSRNQISGNIPPSMAKSHFLNYLNLSYNDLSGEIPSSTQLQSQDASSFVGNNR 944

Query: 295  LCGSPLPNNCFVAAPAPHNESEDDIDGNDDGDEDE---VNWFYVSLALGFVVGFWFVMGP 351
            LCG PL  +C VA      E+  D  G   G+E E   ++ FY+ L +G VVGFW V G 
Sbjct: 945  LCGPPLAISCTVA------ETPQDT-GKGSGNEGEGIKIDEFYLGLTIGSVVGFWGVFGS 997

Query: 352  LFVSRKWRSMYYHFLARL 369
            L  +R WR  Y+ FL ++
Sbjct: 998  LLYNRSWRHAYFQFLDKV 1015

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 192/373 (51%), Positives = 257/373 (68%), Gaps = 6/373 (1%)

Query: 2    IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            +  L L +NH SGEIPDCWMNW +++ ++L NN+ +G IP S+G L+ LQSL+LRKN+LS
Sbjct: 646  LETLHLADNHLSGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLS 705

Query: 62   GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
            G +P+S QNCT L+ +D+GEN FVGN+P WIG + S  +I++L SN+F+G +P+ LC L+
Sbjct: 706  GVLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLS 765

Query: 122  SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
             L +LDLA N+LSG+IPKC  N+S+M  AN +    + Y     G  +E  LL++KG  +
Sbjct: 766  YLTILDLAHNNLSGTIPKCFMNLSAMA-ANQNSSNPISYAFGHFGTSLETLLLMIKGILL 824

Query: 182  EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
            EY++ L+L+  +DLS N  +GEIP+ + +L  L  L+LS N   GRIP +IG L  + SI
Sbjct: 825  EYSSTLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGRIPKNIGNLRLLESI 884

Query: 242  DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLP 301
            D S NQL GEIP S+S+LTFLS L LS NNL+GKIP STQLQSFD SS+ GN LCG PL 
Sbjct: 885  DLSRNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDISSYDGNHLCGPPLL 944

Query: 302  NNCFVAAPAPHNESEDDIDGNDDGDEDEVN--WFYVSLALGFVVGFWFVMGPLFVSRKWR 359
              C   A      S+ + + N++GD  EV+  WFY S+A GFVVGFW VMGPL  ++ WR
Sbjct: 945  EICSTDATT---SSDHNNNENNEGDGLEVDWLWFYASMAFGFVVGFWVVMGPLLFNKSWR 1001

Query: 360  SMYYHFLARLGDK 372
              Y+  L RL  K
Sbjct: 1002 FRYFRILERLEYK 1014

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284751|gb|AEQ27747.1| receptor-like protein [Malus baccata]

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/374 (50%), Positives = 244/374 (65%), Gaps = 3/374 (0%)

Query: 4   ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
           IL+LG N  +G++PDCWM+W  L  LNL NNN TGN+P+S+G L  L+SL+LR N L G+
Sbjct: 606 ILRLGNNFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGE 665

Query: 64  IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL 123
           +P S QNCT L ++D+ EN F G++P WIG   S L +LNLRSNKF G +PN++C L SL
Sbjct: 666 LPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSL 725

Query: 124 HVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY 183
            +LDLA N LSG IP+C  N+S+M   + S      +  V++G   E+A+LV KG  +EY
Sbjct: 726 QILDLAHNELSGMIPRCFHNLSAMANFSQSFSPTSFWGMVASG-LTENAILVTKGMEMEY 784

Query: 184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDF 243
             IL  ++ +DLS N   GEIP E+  L AL  L+LS N FTGRIP+ IG++  + S+DF
Sbjct: 785 TKILGFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNRFTGRIPSKIGSMAQLESLDF 844

Query: 244 SANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNN 303
           S NQL GEIP S++ LTFLS L LS NNL+G+IP STQLQS D SSF GN LCG+PL  N
Sbjct: 845 SMNQLDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKN 904

Query: 304 CFVAAPAPHNESEDDIDGNDDGDEDEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYY 363
           C      P    E D  G     EDE  WFYVSL +GF  GFW V+G L V+  W  +  
Sbjct: 905 CSENGVIPPPTVEHDGGGGYSLVEDE--WFYVSLGVGFFTGFWIVLGSLLVNMPWSILLS 962

Query: 364 HFLARLGDKNFWVV 377
             L R+  K + V+
Sbjct: 963 QLLNRIVLKMYHVI 976

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.664	0.279	0.394	2.7e-44
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.908	0.392	0.336	3.8e-39
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.939	0.452	0.317	5.6e-39
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.942	0.406	0.334	8e-39
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.913	0.391	0.329	8.2e-39
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.784	0.368	0.335	1.7e-38
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.897	0.382	0.327	7.7e-38
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.879	0.387	0.326	1.9e-37
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.790	0.338	0.348	2.6e-37
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.876	0.381	0.310	8.7e-37

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 2.7e-44, P = 2.7e-44
 Identities = 103/261 (39%), Positives = 153/261 (58%)

Query:     1 GIRILKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSL 60
             G++IL L +NHFSG  P CW                +G IP SLGML SL  L L +NSL
Sbjct:   616 GLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSL 675

Query:    61 SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
              G+IP S +NC+ L  +D+G N+  G +P+W+G + SSL +L L+SN F G +P+ LC +
Sbjct:   676 EGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVG-KLSSLFMLRLQSNSFTGQIPDDLCNV 734

Query:   121 TSLHVLDLADNHLSGSIPKCISNISSMVTA-NFSIGTDVQYPSVSTGKYVEDALLV-LKG 178
              +L +LDL+ N +SG IPKCISN++++    N  +  ++ +      +Y   A  + L G
Sbjct:   735 PNLRILDLSGNKISGPIPKCISNLTAIARGTNNEVFQNLVFIVTRAREYEAIANSINLSG 794

Query:   179 KAVEYNT---ILKLM--RLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIG 233
               +       IL L+  R+++LS+N  +G IP +I  L  L +LDLS N F+G IP S  
Sbjct:   795 NNISGEIPREILGLLYLRILNLSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIPQSFA 854

Query:   234 ALESILSIDFSANQLYGEIPQ 254
             A+ S+  ++ S N+L G IP+
Sbjct:   855 AISSLQRLNLSFNKLEGSIPK 875

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 3.8e-39, P = 3.8e-39
 Identities = 123/365 (33%), Positives = 174/365 (47%)

Query:     4 ILKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
             +L L  N+F+G IP C                  G+IP +    + L+SL++  N L+G+
Sbjct:   512 VLDLRYNNFTGPIPPC---LSNLLFLNLRKNNLEGSIPDTYFADAPLRSLDVGYNRLTGK 568

Query:    64 IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQ-LCGL 120
             +P S  NC+ L  L +  N      P ++ +    L +L L SNKF G L  PNQ   G 
Sbjct:   569 LPRSLLNCSALQFLSVDHNGIEDTFPFYLKV-LPKLQVLLLSSNKFYGPLSPPNQGSLGF 627

Query:   121 TSLHVLDLADNHLSGSIPK--CISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVL-- 176
               L +L++A N L+GS+P+   ++  +S +T N   G  + Y  V  G Y    L  +  
Sbjct:   628 PELRILEIAGNKLTGSLPQDFFVNWKASSLTMNEDQGLYMVYSKVVYGIYYLSYLATIDL 687

Query:   177 --KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA 234
               KG ++E   +L     IDLS N+  GEIP  I  L+AL++L+LS N+FTG IP S+  
Sbjct:   688 QYKGLSMEQKWVLTSSATIDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLAN 747

Query:   235 LESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSFTGNR 294
             L  I S+D S+NQL G IP  + +L+F            G+IP  TQ+     SSF GN 
Sbjct:   748 LVKIESLDLSSNQLSGTIPNGLGTLSFLAYVNVSHNQLNGEIPQGTQITGQPKSSFEGNA 807

Query:   295 -LCGSPLPNNCF-VAAPAPHXXXXXXXXXXXXXXXXXVNWFYVSLALGFVVGFWFVMGPL 352
              LCG PL   CF   AP  H                 +NW  V++  G  V     +  L
Sbjct:   808 GLCGLPLQQRCFGTNAPPAHQFKEEEDEEQEQV----LNWEGVAIGYGVGVLLGLAIAQL 863

Query:   353 FVSRK 357
               S K
Sbjct:   864 IASYK 868

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 5.6e-39, P = 5.6e-39
 Identities = 121/381 (31%), Positives = 180/381 (47%)

Query:     2 IRILKLGENHFSGEIPDCWMXXXXXXXXXXXXX-XFTGNIPISLGMLSSLQSLNLRKNSL 60
             + +L L  N+FSG IP C                  TG +P    +   L  L++  N +
Sbjct:   422 LSLLDLSNNNFSGTIPRCLTNVSLGLEALKLSNNSLTGRLP---DIEDRLVLLDVGHNQI 478

Query:    61 SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQLC 118
             SG++P S  NCT L  L++  N      P W+    + L I+ LRSN+F G +  P    
Sbjct:   479 SGKLPRSLVNCTTLKFLNVEGNHINDTFPFWLKA-LTRLEIIVLRSNRFHGPISSPEVSL 537

Query:   119 GLTSLHVLDLADNHLSGSIPK-CISNISSMVTANFSIGTD-VQYPSVSTGKYVEDAL--- 173
               T+L ++D++ N  +GS+P+   +N S+ +  N   G    +Y      KY E  L   
Sbjct:   538 SFTALRIIDISRNSFNGSLPQNYFANWSAPLV-NTPQGYRWPEYTGDEHSKY-ETPLWSY 595

Query:   174 ----LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP 229
                 L +KG+++E   I      ID S N F G+IP  I +L++L+ LDLS NSFTGRIP
Sbjct:   596 PSIHLRIKGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIP 655

Query:   230 NSIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSS 289
             +S+  L+ + S+D S N++ G IPQ +  LTF            G+IP STQ+     SS
Sbjct:   656 SSLAKLKQLESLDLSQNRISGNIPQELRELTFLGYVNMSHNRLTGQIPQSTQVGGQPKSS 715

Query:   290 FTGN-RLCGSPLPNNCFVAAPAPHXXXXXXXXXXXXXXXXXVNWFYVSLALGFVVGFWFV 348
             F GN  LCG PL  +C      P                  +NW   ++  G  V F   
Sbjct:   716 FEGNINLCGLPLQESCLRGNGVP--STPHTQEQELPKQEHALNWKAAAIGYGPGVLFGLA 773

Query:   349 MGPLFVSRKWRSMYYHFLARL 369
             +G  F   +++ + ++ L RL
Sbjct:   774 IGQAFA--RYKPVLFYKLFRL 792

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.0e-39, P = 8.0e-39
 Identities = 125/374 (33%), Positives = 173/374 (46%)

Query:     5 LKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
             L L  N+F+G IP C                  G+IP +    + L+SL++  N L+G++
Sbjct:   514 LDLSYNNFTGPIPPC---PSNFLILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRLTGKL 570

Query:    65 PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQ-LCGLT 121
             P S  NC+ L  L +  N      P  +      L +L L SN F G L  PNQ   G  
Sbjct:   571 PRSLLNCSALQFLSVDHNGIKDTFPFSLKA-LPKLQVLILHSNNFYGPLSPPNQGSLGFP 629

Query:   122 SLHVLDLADNHLSGSIPK-CISNI-SSMVTANFSIGTDVQYPSVSTGKYVEDAL----LV 175
              L +L++A N  +GS+P     N  +S +T N   G  + Y  V  G Y   +L    L 
Sbjct:   630 ELRILEIAGNKFTGSLPPDFFENWKASSLTMNEDQGLYMVYNKVVYGTYYFTSLEAIDLQ 689

Query:   176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235
              KG ++E N +L     ID S N+  GEIP  I  L+AL++L+LS N+FTG IP S+  L
Sbjct:   690 YKGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANL 749

Query:   236 ESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSFTGNR- 294
             + I S+D S+NQL G IP  I +L+F            G+IP  TQ+     SSF GN  
Sbjct:   750 KKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAG 809

Query:   295 LCGSPLPNNCFVAAPAPHXXXXXXXXXXXXXXXXXVNWFYVSLALGFVVGFWFVMGPLFV 354
             LCG PL  +CF    AP                  +NW  V +  G  V     +  L  
Sbjct:   810 LCGLPLQESCF-GTNAPPAQHPKEEEEEEEEEEQVLNWKGVGIGYGVGVLLGLAIAQLIA 868

Query:   355 SRKWRSMYYHFLAR 368
             S K   + + F +R
Sbjct:   869 SYKPEWLVFLFQSR 882

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.2e-39, P = 8.2e-39
 Identities = 120/364 (32%), Positives = 172/364 (47%)

Query:     4 ILKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
             +L L  N+FSG+IP C                  G+IP    + + L+S ++  N L+G+
Sbjct:   511 VLDLSYNNFSGQIPPC---LSNLLYLKLRKNNLEGSIPDKYYVDTPLRSFDVGYNRLTGK 567

Query:    64 IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQ-LCGL 120
             +P S  NC+ L  L +  N      P ++      L +L L SN+F G L  PNQ   G 
Sbjct:   568 LPRSLINCSALQFLSVDHNGIKDTFPFYLKA-LPKLQVLLLSSNEFYGPLSPPNQGPLGF 626

Query:   121 TSLHVLDLADNHLSGSIPK--CISNISSMVTANFSIGTDVQYPSVSTGKY----VEDALL 174
               L +L++A N L+GS+P    ++  +S  T N  +G  + Y  V  G Y     E   L
Sbjct:   627 PELRILEIAGNKLTGSLPPDFFVNWKASSHTMNEDLGLYMVYSKVIFGNYHLTYYETIDL 686

Query:   175 VLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA 234
               KG ++E   +L     IDLS N+  GEIP  +  L+AL++L+LS N+FTG IP S+  
Sbjct:   687 RYKGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIPLSLAN 746

Query:   235 LESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSFTGNR 294
             L+ I S+D S+NQL G IP  + +L+F            G+IP  TQ+     SSF GN 
Sbjct:   747 LKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNA 806

Query:   295 -LCGSPLPNNCFVAAPAPHXXXXXXXXXXXXXXXXXVNWFYVSLALGFVVGFWFVMGPLF 353
              LCG PL  +CF     P                  +NW  V++  G  V     +  L 
Sbjct:   807 GLCGFPLQESCFGTNAPP--AQKPKEEEEAEEDEQELNWKAVAIGYGVGVLLGLAIAQLI 864

Query:   354 VSRK 357
              S K
Sbjct:   865 ASYK 868

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 108/322 (33%), Positives = 173/322 (53%)

Query:     2 IRILKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLS 61
             +++L L +N  SGE P  +               F+G++P   G  +S+  L + +N+ S
Sbjct:   445 LKLLDLSKNRLSGEFPR-FRPESYLEWLDISSNEFSGDVPAYFGGSTSM--LLMSQNNFS 501

Query:    62 GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
             G+ P +F+N + L+ LD+ +N+  G V + I    SS+ +L+LR+N  +G +P  +  LT
Sbjct:   502 GEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLT 561

Query:   122 SLHVLDLADNHLSGSIPKCISNISSMVTAN----------FSIGTDVQYPSVSTGKYVED 171
             SL VLDL++N+L G +P  + N++ M+ +           FS  TD+  P++     +E 
Sbjct:   562 SLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDI--PNIERLIEIES 619

Query:   172 ----ALLV--LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT 225
                 +L+V     K V ++    L  L+DLSKNK  GEIP+ + NL++L  L+LS N F+
Sbjct:   620 EDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFS 679

Query:   226 GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSF 285
             G IP S G LE + S+D S N L GEIP+++S L+             G+IP S QL   
Sbjct:   680 GLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDRL 739

Query:   286 D-PSSFTGNR-LCGSPLPNNCF 305
             + P+ +  N  +CG  +   CF
Sbjct:   740 NNPNIYANNSGICGMQIQVPCF 761

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.7e-38, P = 7.7e-38
 Identities = 118/360 (32%), Positives = 173/360 (48%)

Query:     5 LKLGENHFSGEIPDCWMXXXXXXXXXXXXXX-FTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
             L L +N+FSG IP C                  +G  P  +    SL+SL++  N L G+
Sbjct:   524 LDLSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHI--FESLRSLDVGHNQLVGK 581

Query:    64 IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL 123
             +P S +  + L +L++  N      P W+      L +L LRSN F G + NQ      L
Sbjct:   582 LPRSLRFFSNLEVLNVESNRINDMFPFWLS-SLQKLQVLVLRSNAFHGPI-NQAL-FPKL 638

Query:   124 HVLDLADNHLSGSIPKCI----SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
              ++D++ NH +GS+P       S +SS+ T  +  G++V Y  + +G Y +  +L+ KG 
Sbjct:   639 RIIDISHNHFNGSLPTEYFVEWSRMSSLGT--YEDGSNVNY--LGSGYYQDSMVLMNKGV 694

Query:   180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239
               E   IL +   +D S NKF GEIP  I  L+ L  L+LS N+FTG IP+SIG L ++ 
Sbjct:   695 ESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALE 754

Query:   240 SIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSFTGNR-LCGS 298
             S+D S N+LYGEIPQ I +L+             G +P   Q  +   SSF GN  L GS
Sbjct:   755 SLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGS 814

Query:   299 PLPNNCF-VAAPAPHXXXXXXXXXXXXXXXXXVNWFYVSLALGFVVGFWFVMGPLFVSRK 357
              L   C  +  PA H                 ++W   ++  G  + F  + G + VS K
Sbjct:   815 SLEEVCRDIHTPASHQQFETPQTEEEDEDL--ISWIAAAIGFGPGIAFGLMFGYILVSYK 872

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 117/358 (32%), Positives = 173/358 (48%)

Query:     2 IRILKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLS 61
             + ++ L  N+F+G IP C                  G+IP +    SSL+SL++  N L+
Sbjct:   496 LTMVDLSYNNFTGPIPQC---LSNFMFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLT 552

Query:    62 GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQ-LC 118
             G++P S  NC+ L  L +  N      P W+     +L +L LRSNKF G +  P+Q   
Sbjct:   553 GKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKA-LPNLRVLTLRSNKFYGPISPPHQGPL 611

Query:   119 GLTSLHVLDLADNHLSGSIPKC--ISNISSMVTANFSIGTDVQYP----SVSTGKYV-ED 171
             G   L + ++ADN  +GS+P    ++  +S +T N   G  + Y     + S  +Y   D
Sbjct:   612 GFPELRIFEIADNMFTGSLPPSFFVNWKASALTKNEDGGLYMVYEYDKAANSPVRYTYTD 671

Query:   172 AL-LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPN 230
              + L  KG  +E   +L     ID S N+  G+IP  I  L+AL++L+LS N+FTG IP 
Sbjct:   672 TIDLQYKGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPL 731

Query:   231 SIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSF 290
             S   L ++ S+D S NQL G IP  + SL+F            G+IP  TQ+     SSF
Sbjct:   732 SFANLMNLESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSF 791

Query:   291 TGNR-LCGSPLPNNCFVAAPAPHXXXXXXXXXXXXXXXXXVNWFYVSLALGFVVGFWF 347
              GN  LCG PL   CF ++  P                  +NW   ++A+G+  G  F
Sbjct:   792 EGNAGLCGLPLQETCFDSSVPP-----IQPKQEDEEKGEVINW--KAVAIGYAPGLLF 842

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-37, P = 2.6e-37
 Identities = 110/316 (34%), Positives = 161/316 (50%)

Query:     5 LKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
             + L  N+F+G IP C                  G+IP +L   +SL++L++  N L+G++
Sbjct:   512 IDLSYNNFTGPIPPC---LRNLELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKL 568

Query:    65 PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQ-LCGLT 121
             P SF NC+ L  L +  N      P W+     +L +L LRSN+F G +  P+Q   G  
Sbjct:   569 PRSFVNCSSLKFLSVINNRIEDTFPFWLKA-LPNLQVLTLRSNRFYGPISPPHQGPLGFP 627

Query:   122 SLHVLDLADNHLSGSIPK--CISNISSMVTANFSIGTDVQYPS--VSTGKY-VEDAL-LV 175
              L + +++DN  +GS+P    ++  +S  T N   G  + Y       G Y   DAL L 
Sbjct:   628 ELRIFEISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYMVYEEKLFDEGGYGYTDALDLQ 687

Query:   176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235
              KG  +E    L     ID S N+  G+IP  I  L+AL+++++S N+FTG IP S+  L
Sbjct:   688 YKGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAVNISNNAFTGHIPLSMANL 747

Query:   236 ESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSFTGNR- 294
             E++ S+D S NQL G IP  + S++F            G+IP  TQ+     SSF GN  
Sbjct:   748 ENLESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTGEIPQGTQITGQSKSSFEGNAG 807

Query:   295 LCGSPLPNNCF-VAAP 309
             LCG PL  +CF   AP
Sbjct:   808 LCGLPLKESCFGTGAP 823

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.7e-37, P = 8.7e-37
 Identities = 107/345 (31%), Positives = 164/345 (47%)

Query:     4 ILKLGENHFSGEIPDC-WMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             IL L  N+FSG IP C                  +G++P ++  + SL+SL++  N L G
Sbjct:   507 ILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEG 564

Query:    63 QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
             ++P S  + + L +L++  N      P W+      L +L LRSN F G +         
Sbjct:   565 KLPRSLIHFSTLEVLNVESNRINDTFPFWLS-SLKKLQVLVLRSNAFHGRIHKTR--FPK 621

Query:   123 LHVLDLADNHLSGSIPK-CISNISSMVTANFSIGT-DVQYPSVSTGKYVEDALLVLKGKA 180
             L ++D++ NH +G++P  C    + M +   +    + +Y  + +G Y +  +L+ KG  
Sbjct:   622 LRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKY--MGSGYYHDSMVLMNKGLE 679

Query:   181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
             +E   ILK+   +D S NKF GEIP  I  L+ L  L+LS N FTG IP+S+G L  + S
Sbjct:   680 MELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELES 739

Query:   241 IDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSFTGNR-LCGSP 299
             +D S N+L GEIPQ + +L++            G++P  TQ ++   SSF  N  LCG P
Sbjct:   740 LDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRP 799

Query:   300 LPNNCFVAAPAPHXXXXXXXXXXXXXXXXXVNWFYVSLALGFVVG 344
             L     V  P P                     F   + LG  +G
Sbjct:   800 LEECRVVHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIG 844

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  152 bits (386), Expect = 2e-40
 Identities = 101/278 (36%), Positives = 149/278 (53%), Gaps = 26/278 (9%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +R L L  N+F+G IP   +  L+   L+L NN  +G IP  +G  SSL+ L+L  N L 
Sbjct: 120 LRYLNLSNNNFTGSIPRGSIPNLE--TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G+IP S  N T L  L +  N+ VG +P  +G +  SL  + L  N   G +P ++ GLT
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLT 236

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
           SL+ LDL  N+L+G IP  + N+            ++QY  +   K        L G   
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNL-----------KNLQYLFLYQNK--------LSGPIP 277

Query: 182 EYNTILKLMRLI--DLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239
              +I  L +LI  DLS N  SGEIP  ++ L+ L  L L  N+FTG+IP ++ +L  + 
Sbjct: 278 --PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277
            +   +N+  GEIP+++     L+ L LS NNL+G+IP
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  150 bits (381), Expect = 7e-40
 Identities = 111/363 (30%), Positives = 177/363 (48%), Gaps = 38/363 (10%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           + IL L  N+F+G+IP    +   L VL L +N F+G IP +LG  ++L  L+L  N+L+
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G+IP    +   L  L +  N   G +P  +G    SL  + L+ N F G LP++   L 
Sbjct: 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV-QYPSVSTGKYVEDALLVLKGKA 180
            ++ LD+++N+L G I     ++ S+   + +        P     K +E+         
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN--------- 479

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
                       +DLS+N+FSG +P ++ +L  L+ L LS N  +G IP+ + + + ++S
Sbjct: 480 ------------LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLST-QLQSFDPSSFTGNRLCGSP 299
           +D S NQL G+IP S S +  LS+L LS N LSG+IP +   ++S    + + N L GS 
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Query: 300 LPNNCFVAAPAPHNESEDDIDGNDDGD---------EDEVNWFYVSLALG-----FVVGF 345
                F+A  A       D+ G D            +    WFY++  LG      +V F
Sbjct: 588 PSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAF 647

Query: 346 WFV 348
            FV
Sbjct: 648 GFV 650

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  148 bits (374), Expect = 5e-39
 Identities = 100/281 (35%), Positives = 147/281 (52%), Gaps = 31/281 (11%)

Query: 2   IRILKLGENHFSGEIP-DCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
           I+ + L  N  SG IP D +     L  LNL NNNFTG   I  G + +L++L+L  N L
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--SIPRGSIPNLETLDLSNNML 152

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
           SG+IP    + + L +LD+G N  VG +P  +    +SL  L L SN+  G +P +L  +
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSM----VTANFSIGTDVQYPSVSTGKYVEDALLVL 176
            SL  + L  N+LSG IP  I  ++S+    +  N   G     PS S G          
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG---PIPS-SLGN--------- 258

Query: 177 KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE 236
                     LK ++ + L +NK SG IP  I +L+ L+SLDLS NS +G IP  +  L+
Sbjct: 259 ----------LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 237 SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277
           ++  +   +N   G+IP +++SL  L  L+L +N  SG+IP
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (353), Expect = 3e-36
 Identities = 95/279 (34%), Positives = 138/279 (49%), Gaps = 20/279 (7%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
            +  L L  N  SGEIP+   ++  L VL+LG N   G IP SL  L+SL+ L L  N L
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
            GQIP        L  + +G N   G +P  IG   +SL  L+L  N   G +P+ L  L
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
            +L  L L  N LSG IP  I ++  +++ + S  +                   L G+ 
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-------------------LSGEI 300

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
            E    L+ + ++ L  N F+G+IP  + +L  L  L L  N F+G IP ++G   ++  
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279
           +D S N L GEIP+ + S   L +L L +N+L G+IP S
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (353), Expect = 4e-36
 Identities = 98/299 (32%), Positives = 148/299 (49%), Gaps = 22/299 (7%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
           L L +N  SGEIP+  +   +L +L+L +NNFTG IP++L  L  LQ L L  N  SG+I
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 65  PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124
           P +      L +LD+  N   G +P  +     +L  L L SN   G +P  L    SL 
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGL-CSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407

Query: 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN 184
            + L DN  SG +P             F+    V +  +S           L+G+     
Sbjct: 408 RVRLQDNSFSGELPS-----------EFTKLPLVYFLDISNNN--------LQGRINSRK 448

Query: 185 TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFS 244
             +  ++++ L++NKF G +P    + R L +LDLS N F+G +P  +G+L  ++ +  S
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 245 ANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGSPLPN 302
            N+L GEIP  +SS   L  L LS+N LSG+IP S +++        + N+L G    N
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  130 bits (329), Expect = 4e-33
 Identities = 102/298 (34%), Positives = 136/298 (45%), Gaps = 48/298 (16%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLS-SLQSLNLRKNSL 60
           +  + L   + SG+I         +  +NL NN  +G IP  +   S SL+ LNL  N+ 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
           +G IP        L  LD+  N   G +P  IG  FSSL +L+L  N   G +PN L  L
Sbjct: 131 TGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           TSL  L LA N L G IP                           G+             
Sbjct: 188 TSLEFLTLASNQLVGQIP------------------------RELGQ------------- 210

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
                 +K ++ I L  N  SGEIP EI  L +L  LDL  N+ TG IP+S+G L+++  
Sbjct: 211 ------MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP-LSTQLQSFDPSSFTGNRLCG 297
           +    N+L G IP SI SL  L  L LS+N+LSG+IP L  QLQ+ +      N   G
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 7e-17
 Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 25/215 (11%)

Query: 91  WIGI---RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           W GI     S ++ ++L      G + + +  L  +  ++L++N LSG IP  I   SS 
Sbjct: 60  WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS- 118

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSE 207
                     ++Y ++S   +                  +  +  +DLS N  SGEIP++
Sbjct: 119 ---------SLRYLNLSNNNFTGSI----------PRGSIPNLETLDLSNNMLSGEIPND 159

Query: 208 IMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKL 267
           I +  +L  LDL  N   G+IPNS+  L S+  +  ++NQL G+IP+ +  +  L  + L
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 268 SNNNLSGKIPLST-QLQSFDPSSFTGNRLCGSPLP 301
             NNLSG+IP     L S +      N L G P+P
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-PIP 253

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 193 IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEI 252
           + L      G IP++I  LR L S++LS NS  G IP S+G++ S+  +D S N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 253 PQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSF--TGNR-LCGSP 299
           P+S+  LT L  L L+ N+LSG++P +   +    +SF  T N  LCG P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 41/120 (34%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
           L L      G IP+       L  +NL  N+  GNIP SLG ++SL+ L+L  NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 65  PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124
           P S    T L +L++  N   G VP  +G R       N   N         LCG+  L 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA-------GLCGIPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 38/110 (34%), Positives = 50/110 (45%), Gaps = 25/110 (22%)

Query: 29  LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNV 88
           L L N    G IP  +  L  LQS+NL  NS+ G IP S  + T L +LD+  N F G++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 89  PTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
           P  +G                          LTSL +L+L  N LSG +P
Sbjct: 483 PESLGQ-------------------------LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 155 GTDVQYPSVSTGKYVEDAL-LVLKG-KAVEYNTILKLMRL--IDLSKNKFSGEIPSEIMN 210
           G D Q+ S + GK+  D L L  +G +    N I KL  L  I+LS N   G IP  + +
Sbjct: 406 GADCQFDS-TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS 464

Query: 211 LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI 256
           + +L  LDLS NSF G IP S+G L S+  ++ + N L G +P ++
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 43/134 (32%)

Query: 102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP 161
           L L +   RG +PN +  L  L  ++L+ N + G+IP  + +I+S+              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------------- 469

Query: 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC 221
                                         ++DLS N F+G IP  +  L +L  L+L+ 
Sbjct: 470 ------------------------------VLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 222 NSFTGRIPNSIGAL 235
           NS +GR+P ++G  
Sbjct: 500 NSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 71/274 (25%), Positives = 117/274 (42%), Gaps = 54/274 (19%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L L  N     I +  +   +L  L+L NNN T   P+   + S+L+ L+L  N + 
Sbjct: 95  LPSLDLNLNRLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
             +P+  +N   L  LD+  N+ + ++P  +    S+L  L+L  NK    LP ++  L+
Sbjct: 154 -SLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIELLS 209

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
           +L  LDL++N +       I  +SS+                                  
Sbjct: 210 ALEELDLSNNSI-------IELLSSL---------------------------------- 228

Query: 182 EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
              + LK +  ++LS NK   ++P  I NL  L +LDLS N       +S+G+L ++  +
Sbjct: 229 ---SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLREL 282

Query: 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGK 275
           D S N L   +P     L  L    L N  L+ K
Sbjct: 283 DLSGNSLSNALPLIA--LLLLLLELLLNLLLTLK 314

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 28 VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           L+L NN  T     +   L +L+ L+L  N+L+   P +F     L  LD+  N  
Sbjct: 4  SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 95  RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           +   L  +NL  N  RG +P  L  +TSL VLDL+ N  +GSIP+ +  ++S+
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 24/67 (35%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
            + +L L  N F+G IP+                        SLG L+SL+ LNL  NSL
Sbjct: 467 SLEVLDLSYNSFNGSIPE------------------------SLGQLTSLRILNLNGNSL 502

Query: 61  SGQIPAS 67
           SG++PA+
Sbjct: 503 SGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 25/85 (29%)

Query: 49  SLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNK 108
           +L+SL+L  N L+     +F+                            +L +L+L  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGL-------------------------PNLKVLDLSGNN 35

Query: 109 FRGVLPNQLCGLTSLHVLDLADNHL 133
              + P    GL SL  LDL+ N+L
Sbjct: 36  LTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 80/265 (30%), Positives = 118/265 (44%), Gaps = 51/265 (19%)

Query: 39  NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS 98
           +   +L  L  L SL+L  N L   I    +  T L  LD+  N  + ++P  IG+  S+
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLEL-TNLTSLDLDNNN-ITDIPPLIGLLKSN 141

Query: 99  LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV 158
           L  L+L  NK    LP+ L  L +L  LDL+ N LS  +PK +SN+S+            
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN------------ 187

Query: 159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLD 218
                                         L  L DLS NK S ++P EI  L AL  LD
Sbjct: 188 ------------------------------LNNL-DLSGNKIS-DLPPEIELLSALEELD 215

Query: 219 LSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL 278
           LS NS    + +S+  L+++  ++ S N+L  ++P+SI +L+ L  L LSNN +S  I  
Sbjct: 216 LSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQIS-SISS 272

Query: 279 STQLQSFDPSSFTGNRLCGSPLPNN 303
              L +      +GN L  +     
Sbjct: 273 LGSLTNLRELDLSGNSLSNALPLIA 297

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
PLN03150	623	hypothetical protein; Provisional	99.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.35
PLN03150	623	hypothetical protein; Provisional	99.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.29
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.24
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.57
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.44
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.34
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.07
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
PRK15386	426	type III secretion protein GogB; Provisional	97.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.99
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.19
KOG4341	483	consensus F-box protein containing LRR [General fu	96.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.6
KOG4308	478	consensus LRR-containing protein [Function unknown	95.03
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.05
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.91
smart00370	26	LRR Leucine-rich repeats, outliers.	93.91
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.83
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.78
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.69
smart00370	26	LRR Leucine-rich repeats, outliers.	92.69
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	91.37
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	90.44
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.85
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	89.11
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.13
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	87.14
KOG4341	483	consensus F-box protein containing LRR [General fu	86.87
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	86.44
KOG4308	478	consensus LRR-containing protein [Function unknown	84.13
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	84.02
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	83.24
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.68
PF15102	146	TMEM154: TMEM154 protein family	82.36

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-35  Score=306.29  Aligned_cols=298  Identities=33%  Similarity=0.513  Sum_probs=200.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|+++
T Consensus       285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls  364 (968)
T PLN00113        285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS  364 (968)
T ss_pred             CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence            46778888888877777777778888888888887777777777777778888887777777777777777777777777


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++.|+.++++.+.....
T Consensus       365 ~n~l~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  443 (968)
T PLN00113        365 TNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR  443 (968)
T ss_pred             CCeeEeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence            7777666666554 455566666665555555555555555555555555555555555555555555555544433221


Q ss_pred             CCCCCC-----------------------ccccceEEEE-----eccccchhhhcccccEEEccCCcccccCchhhhccc
Q 046668          161 PSVSTG-----------------------KYVEDALLVL-----KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLR  212 (381)
Q Consensus       161 ~~~~~~-----------------------~~~~~~~~~~-----~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~  212 (381)
                      ......                       .........+     .+..+..+..++.|+.|++++|++.+.+|..+..++
T Consensus       444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  523 (968)
T PLN00113        444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK  523 (968)
T ss_pred             cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence            110000                       0001111111     222333455677778888888888777777777888


Q ss_pred             cCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccC
Q 046668          213 ALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG  292 (381)
Q Consensus       213 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~  292 (381)
                      +|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|+.+++++|++.|.+|..+.+..+....+.+
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~  603 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG  603 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence            88888888888887788878888888888888888887778777777888888888888888888777777777777777


Q ss_pred             C-CCCCCC
Q 046668          293 N-RLCGSP  299 (381)
Q Consensus       293 n-~l~~~~  299 (381)
                      | .+||.+
T Consensus       604 n~~lc~~~  611 (968)
T PLN00113        604 NIDLCGGD  611 (968)
T ss_pred             CccccCCc
Confidence            7 566643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-34  Score=297.22  Aligned_cols=297  Identities=32%  Similarity=0.510  Sum_probs=252.4

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|+.|+++
T Consensus       261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  340 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW  340 (968)
T ss_pred             CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.++++.+.....
T Consensus       341 ~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        341 SNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             CCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            9999988998887 799999999999999999999999999999999999999999999999999999999988865432


Q ss_pred             CCCCCCccccceEEEEec-----ccc-----------------------chhhhcccccEEEccCCcccccCchhhhccc
Q 046668          161 PSVSTGKYVEDALLVLKG-----KAV-----------------------EYNTILKLMRLIDLSKNKFSGEIPSEIMNLR  212 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~-----~~~-----------------------~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~  212 (381)
                      ...............+.+     ...                       ......+.|+.|++++|++.+..|..+..++
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  499 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS  499 (968)
T ss_pred             CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh
Confidence            111111111111111110     000                       0111235688888888888888888899999


Q ss_pred             cCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCccc
Q 046668          213 ALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFT  291 (381)
Q Consensus       213 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~  291 (381)
                      +|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+..++.++++
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            9999999999999999999999999999999999999999999999999999999999999988864 557778888899


Q ss_pred             CCCCCCC
Q 046668          292 GNRLCGS  298 (381)
Q Consensus       292 ~n~l~~~  298 (381)
                      +|.+.+.
T Consensus       580 ~N~l~~~  586 (968)
T PLN00113        580 HNHLHGS  586 (968)
T ss_pred             CCcceee
Confidence            9977664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-31  Score=241.21  Aligned_cols=272  Identities=24%  Similarity=0.218  Sum_probs=154.4

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      |+.|+|.+|.|+.+-.+.+.-++.|++||||.|.|+.+...+|..-.++++|+|++|.|+..-.+.|.++.+|..|.|+.
T Consensus       127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr  206 (873)
T KOG4194|consen  127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR  206 (873)
T ss_pred             eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence            55666666666655555566666666666666666655555555555666666666666655556666666666666666


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |.++ .+|...|..+++|+.|+|..|.+.-+-.-.|.++++|+.|.+..|.+...-..+|-.+.+++.+++..+......
T Consensus       207 Nrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn  285 (873)
T KOG4194|consen  207 NRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN  285 (873)
T ss_pred             Cccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence            6665 566655545666666666666665333445566666666666666655444555555556555555555443322


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI  241 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  241 (381)
                      .                   ..+..++.|+.|++++|.|..+.++.+...++|++|+|+.|+++...+.+|..+.+|++|
T Consensus       286 ~-------------------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  286 E-------------------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             c-------------------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            2                   122234556666666666655555555556666666666666665555555555556666


Q ss_pred             eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC----CCCCccCCCcccCC
Q 046668          242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGN  293 (381)
Q Consensus       242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~----~~l~~l~~~~~~~n  293 (381)
                      +|++|+++..-...|..+.+|+.||+++|.+++.+.+.    ..++.|+.+.+.||
T Consensus       347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN  402 (873)
T KOG4194|consen  347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN  402 (873)
T ss_pred             cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence            66666555444445555555555555555555444332    12344444444444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=5.4e-31  Score=237.20  Aligned_cols=276  Identities=22%  Similarity=0.224  Sum_probs=137.0

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      |+.||||.|.|+.+--.+|..-.++++|+|++|+|+....+.|.++.+|.+|.|+.|+++...+.+|+++++|+.|||..
T Consensus       151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            45555555555543334454445555555555555555555555555555555555555544445555555555555555


Q ss_pred             CcCcc-----------------------cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC
Q 046668           82 NEFVG-----------------------NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP  138 (381)
Q Consensus        82 n~l~~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  138 (381)
                      |.+.-                       .+.++.|..+.++++|+|..|+++.+-...+-+++.|+.|++++|.+....+
T Consensus       231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            55430                       3334444445555555555555554444455555555555555555555555


Q ss_pred             cccccccccccccccCCccccCCCCCCCccccceEEEEeccccch-----hhhcccccEEEccCCcccccCc---hhhhc
Q 046668          139 KCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY-----NTILKLMRLIDLSKNKFSGEIP---SEIMN  210 (381)
Q Consensus       139 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~n~~~~~~~---~~~~~  210 (381)
                      +....+++|+.|+++.+....++.-....+.......+..+....     +..+++|+.|||.+|.++..+.   ..|.+
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence            555555555555555555544433222222222222222222211     1224445555555555443322   22444


Q ss_pred             cccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668          211 LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       211 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  278 (381)
                      ++.|+.|.+.+|++......+|.+++.|++|||.+|.|..+-|++|..+ .|+.|-+..-.+.|+|..
T Consensus       391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence            5555555555555553333445555555555555555554455555555 455555555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=5.5e-28  Score=219.79  Aligned_cols=247  Identities=25%  Similarity=0.400  Sum_probs=157.2

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      |++|++++|++. .+-+.+..++.|+.+++.+|++. .-+|..+..+..|++|||++|+++ ..|..+..-+++-+|+||
T Consensus        57 LEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS  134 (1255)
T KOG0444|consen   57 LEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLS  134 (1255)
T ss_pred             hhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcc
Confidence            455556666555 33444555566666666666553 124444555666667777777666 566666666666677777


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++. +||..++.++..|-.|||++|++. .+|+....+.+|++|+|++|.+...--..+..+++|+.|.++...-+  
T Consensus       135 ~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT--  210 (1255)
T KOG0444|consen  135 YNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT--  210 (1255)
T ss_pred             cCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch--
Confidence            77665 666666666666667777777666 55666666667777777776655333333444555555555544322  


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS  240 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  240 (381)
                                      ..+.+..+..+.+|..+|++.|++. ..|+.+..+++|+.|+||+|.++ .+....+...+|++
T Consensus       211 ----------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEt  272 (1255)
T KOG0444|consen  211 ----------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLET  272 (1255)
T ss_pred             ----------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence                            1123334455677777777777776 67777777777777777777777 55555555667777


Q ss_pred             EeccCCcCcccCchhhhCCCCCCeeeCCCCcce
Q 046668          241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS  273 (381)
Q Consensus       241 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~  273 (381)
                      |++++|+++ .+|+.++.++.|+.|.+.+|+++
T Consensus       273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             hccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            777777777 67777777777777777777664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=8.4e-28  Score=207.35  Aligned_cols=296  Identities=22%  Similarity=0.190  Sum_probs=199.3

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccC-CccceeCCccccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRK-NSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ..++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+.|++|.++.+|.+|-+.+ |+|+....++|.+|..|+.|.+.-
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            3566777777766666677777777777777777777777777777766665555 677766666777777777777777


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC------------CCcCccccccccccc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS------------GSIPKCISNISSMVT  149 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~  149 (381)
                      |++. .++...+..+++|..|.+.+|.+..+....|..+..++++.+..|.+.            ...|..++.......
T Consensus       150 n~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  150 NHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence            7765 566666666777777777777776444446677777777777766621            111111221111111


Q ss_pred             ccccCCccccCCCCCCCccccceEEE------Eecc-ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCc
Q 046668          150 ANFSIGTDVQYPSVSTGKYVEDALLV------LKGK-AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCN  222 (381)
Q Consensus       150 l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n  222 (381)
                      ..+......+...-....+.......      ++.. ...-++.+++|+.|+|++|.++++-+.+|.+...+++|.|..|
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence            11110000000000000000000000      1111 1223567999999999999999999999999999999999999


Q ss_pred             ccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCCCCC
Q 046668          223 SFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSP  299 (381)
Q Consensus       223 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~~~~  299 (381)
                      ++.......|.++.+|+.|+|.+|+|+...|..|..+.+|.+|++-.|+|.|.|.....-.|++.-...+|.-|..|
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p  385 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP  385 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence            99977778899999999999999999988899999999999999999999999887665667777667777666654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=3.5e-27  Score=214.63  Aligned_cols=271  Identities=26%  Similarity=0.411  Sum_probs=194.8

Q ss_pred             ccEEEcCCCcccc-cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            2 IRILKLGENHFSG-EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         2 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      |+.+++.+|+++. -+|+.+.++..|++||||+|++. ..|..+..-+++-.|+|++|+|..+...-|-++.-|-.||||
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence            4556666666542 45666667777777777777776 667677667777777777777764444556677777777777


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEccccccc-------------------------ccCCcCccCCCCCCEEeccCCcCCC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFR-------------------------GVLPNQLCGLTSLHVLDLADNHLSG  135 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~~  135 (381)
                      +|++. .+|..+. .+..|++|+|++|.+.                         ..+|..+..+.+|..+|++.|.+. 
T Consensus       159 ~NrLe-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-  235 (1255)
T KOG0444|consen  159 NNRLE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-  235 (1255)
T ss_pred             cchhh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence            77775 6666665 5667777777766543                         234566666777777777777776 


Q ss_pred             CcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCc
Q 046668          136 SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALV  215 (381)
Q Consensus       136 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~  215 (381)
                      .+|+++-.+.+|+.|+++.+...++..                    ......+|++|+++.|+++ .+|..+..+++|+
T Consensus       236 ~vPecly~l~~LrrLNLS~N~iteL~~--------------------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGNKITELNM--------------------TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             cchHHHhhhhhhheeccCcCceeeeec--------------------cHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            677777777777777777766543221                    2234677888999999888 7888888899999


Q ss_pred             EEeCCCcccc-cccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCC
Q 046668          216 SLDLSCNSFT-GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGN  293 (381)
Q Consensus       216 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n  293 (381)
                      .|.+.+|+++ .-+|..++.+.+|+.+..++|.+. .+|+.++.++.|+.|.+++|++. ++|.. ..++.++.+++..|
T Consensus       295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence            9988888876 247888888888888888888887 78888888889999999999887 44443 56777888888777


Q ss_pred             -CCCCCC
Q 046668          294 -RLCGSP  299 (381)
Q Consensus       294 -~l~~~~  299 (381)
                       .+.-+|
T Consensus       373 pnLVMPP  379 (1255)
T KOG0444|consen  373 PNLVMPP  379 (1255)
T ss_pred             cCccCCC
Confidence             454433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=1.5e-26  Score=200.13  Aligned_cols=262  Identities=29%  Similarity=0.407  Sum_probs=205.8

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ++.+++++|.++ .+.+.+.++..|.+|++.+|.+. ..|.+++.+..++.++.++|+++ .+|++++.+.+|+.++.+.
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            456778888877 45566778888888888888887 67778888888888888888887 7888888888888888888


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |.+. .+|++++ .+..|+.++..+|.++ ..|+.+..+.+|..+++.+|.+. ..|...-+++.|++++...+....  
T Consensus       124 n~~~-el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~t--  197 (565)
T KOG0472|consen  124 NELK-ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLET--  197 (565)
T ss_pred             ccee-ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhc--
Confidence            8887 7777777 6778888888888887 66777777888888888888887 444444447777777665554332  


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhh-hccCCCCE
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSI-GALESILS  240 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~  240 (381)
                                        .+..++.+.+|+.|++..|++. ..| .|.++..|.+|.++.|.+. .+|.+. .+++++..
T Consensus       198 ------------------lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  198 ------------------LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV  256 (565)
T ss_pred             ------------------CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence                              2334455788888999999987 566 7889999999999999998 666554 48899999


Q ss_pred             EeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCC
Q 046668          241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL  295 (381)
Q Consensus       241 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l  295 (381)
                      ||+..|++. ..|+.++-+.+|+.||+++|.+++..+..+.+ ++..+.+.||++
T Consensus       257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             eeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            999999998 78888888999999999999998877777777 788888888865

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=2.7e-25  Score=192.38  Aligned_cols=284  Identities=24%  Similarity=0.327  Sum_probs=162.0

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccc-cCCCCCCEEeCc
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASF-QNCTKLVMLDIG   80 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~   80 (381)
                      |++||...|-++ .+|..++++..|..|+|.+|++. .+| .|.++..|++|.+..|.+. .+|.+. .++++|.+||+.
T Consensus       185 L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  185 LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence            455555555555 56666666666666666666665 455 5666666666666666665 444333 366677777777


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccc-------------------
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-------------------  141 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------  141 (381)
                      +|++. .+|++++ .+.+|++||+++|.++ .+|..++++ +|+.|-+.+|.+.. +-..+                   
T Consensus       261 dNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~d  335 (565)
T KOG0472|consen  261 DNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDD  335 (565)
T ss_pred             ccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccC
Confidence            77776 6666666 5666777777777766 556666666 66777776666421 00000                   


Q ss_pred             -----------------------ccccccccccccCCccccCCCCCCCccccc--eEEEEecc-----------------
Q 046668          142 -----------------------SNISSMVTANFSIGTDVQYPSVSTGKYVED--ALLVLKGK-----------------  179 (381)
Q Consensus       142 -----------------------~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------  179 (381)
                                             ..+-+.+.+.++....+.+|..-......+  ....+..+                 
T Consensus       336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT  415 (565)
T KOG0472|consen  336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT  415 (565)
T ss_pred             CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence                                   001111112221111111111000000000  00011111                 


Q ss_pred             -----------ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcC
Q 046668          180 -----------AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQL  248 (381)
Q Consensus       180 -----------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  248 (381)
                                 ....+..+++|..|++++|-+. .+|..++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++
T Consensus       416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi  493 (565)
T KOG0472|consen  416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI  493 (565)
T ss_pred             HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence                       1122334666777777777665 66677777777777777777776 6666555555555555556666


Q ss_pred             cccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCC
Q 046668          249 YGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLC  296 (381)
Q Consensus       249 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~  296 (381)
                      ....++.+..+.+|..||+.+|.+.-..|..+.+++++.+.+.||++.
T Consensus       494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  494 GSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            655555577788888888888888755555577778888888877554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=2.3e-23  Score=180.11  Aligned_cols=270  Identities=20%  Similarity=0.187  Sum_probs=205.4

Q ss_pred             CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC-CcCcccCChhHHhcCCCCcEEE
Q 046668           25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE-NEFVGNVPTWIGIRFSSLMILN  103 (381)
Q Consensus        25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~  103 (381)
                      .-..++|..|.|+.+.+.+|..+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+++ .+|...+.++.+|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            567899999999999999999999999999999999999999999999998876655 8898 89999998999999999


Q ss_pred             cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCC---C---------Cccccc
Q 046668          104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVS---T---------GKYVED  171 (381)
Q Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~---~---------~~~~~~  171 (381)
                      +.-|++..+..+.|..+++|..|.+.+|.+...--..|..+.+++.+.+..+..+..-...   .         ..+...
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            9999999888899999999999999999998444458888999988887766643221110   0         000000


Q ss_pred             eEEEE---ecccc---chhhhcccccEEEccCCcccccCch-hhhccccCcEEeCCCcccccccChhhhccCCCCEEecc
Q 046668          172 ALLVL---KGKAV---EYNTILKLMRLIDLSKNKFSGEIPS-EIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFS  244 (381)
Q Consensus       172 ~~~~~---~~~~~---~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  244 (381)
                      ....+   .....   ......+.+..-..+.+...++-|. .|.++++|++|+|++|++++.-+.+|.++..++.|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence            00000   00000   0001112222222233444445554 59999999999999999999999999999999999999


Q ss_pred             CCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCC
Q 046668          245 ANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRL  295 (381)
Q Consensus       245 ~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l  295 (381)
                      .|++.......|..+..|+.|++.+|++++.-|.. ..+..+..+.+-+|++
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            99998777778999999999999999999877754 3344566666777733

>PLN03210 Resistant to P

Probab=99.84  E-value=1.5e-19  Score=187.77  Aligned_cols=279  Identities=20%  Similarity=0.259  Sum_probs=147.6

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      |+.|.+.++.++ .+|..| ...+|+.|++++|.+. .++..+..+++|++|+|+++.....+|. +..+++|++|++++
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence            455555555554 445444 3456666666666655 4555555666666666665543334442 55566666666666


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |.....+|..+. .+++|+.|++++|..-..+|..+ ++++|++|++++|.....+|..   .++|+.++++.+....+|
T Consensus       667 c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        667 CSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP  741 (1153)
T ss_pred             CCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence            554445665554 56666666666543333444433 4566666666665443333332   234455555555444433


Q ss_pred             CCCCCccccceEEEEec------------cccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccC
Q 046668          162 SVSTGKYVEDALLVLKG------------KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP  229 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  229 (381)
                      .....  .......+..            ........+++|+.|++++|.....+|..++.+++|+.|++++|...+.+|
T Consensus       742 ~~~~l--~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        742 SNLRL--ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             ccccc--cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            32110  0000000000            000011124567777777776665667777777777777777664332444


Q ss_pred             hhhhcc---------------------CCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC-CCCCCccCC
Q 046668          230 NSIGAL---------------------ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL-STQLQSFDP  287 (381)
Q Consensus       230 ~~~~~l---------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~l~~l~~  287 (381)
                      ... .+                     ++|+.|++++|.++ .+|..+..+++|+.|++++|+-...+|. ...++.++.
T Consensus       820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~  897 (1153)
T PLN03210        820 TGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET  897 (1153)
T ss_pred             CCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence            332 23                     34556666666665 5666777778888888877533233333 245566666


Q ss_pred             CcccCC
Q 046668          288 SSFTGN  293 (381)
Q Consensus       288 ~~~~~n  293 (381)
                      +.+.++
T Consensus       898 L~l~~C  903 (1153)
T PLN03210        898 VDFSDC  903 (1153)
T ss_pred             eecCCC
Confidence            666666

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.84  E-value=1.6e-19  Score=187.56  Aligned_cols=262  Identities=19%  Similarity=0.214  Sum_probs=180.0

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|+.|++++|++. .++..+..+++|+.|+|+++...+.+| .++.+++|++|++++|.....+|..+.++++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            5789999999988 678888899999999999886444666 47889999999999987666899999999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|...+.+|..+  .+++|+.|++++|......|..   .++|++|++++|.+. .+|..+ .+++|+.|.+..+.....
T Consensus       690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence            987666888766  6899999999998755455543   467899999999876 556543 355555555443211110


Q ss_pred             C-------CCCCCccccceEEEEe-----ccccchhhhcccccEEEccCCcccccCchhh--------------------
Q 046668          161 P-------SVSTGKYVEDALLVLK-----GKAVEYNTILKLMRLIDLSKNKFSGEIPSEI--------------------  208 (381)
Q Consensus       161 ~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~--------------------  208 (381)
                      .       ..............+.     ...+..+..+++|+.|++++|...+.+|...                    
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence            0       0000000000011111     1122233445555555555543222222211                    


Q ss_pred             hccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcc
Q 046668          209 MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNL  272 (381)
Q Consensus       209 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l  272 (381)
                      ....+|+.|+|++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.-
T Consensus       843 ~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        843 DISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             ccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            11246778888888887 7888899999999999999654446777788899999999999853

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=7.8e-20  Score=178.68  Aligned_cols=222  Identities=25%  Similarity=0.428  Sum_probs=145.8

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ...|++++++++ .+|..+.  ++|+.|+|++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  .+|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            467899999988 5676553  58999999999998 5565554  58999999999998 5666553  4799999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |.+. .+|..+.   .+|+.|++++|.++ .+|..+.  ++|++|++++|+++ .+|..+.  ++|+.++++.+....+|
T Consensus       251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        251 NRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALP  320 (754)
T ss_pred             CccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCC
Confidence            9997 7887764   57999999999998 5666553  58999999999998 4565443  46777777777655443


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI  241 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  241 (381)
                      ...                      +++|+.|++++|.++. +|..+  .++|+.|++++|+++ .+|..+.  ++|++|
T Consensus       321 ~~l----------------------~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~L  372 (754)
T PRK15370        321 ETL----------------------PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTL  372 (754)
T ss_pred             ccc----------------------cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEE
Confidence            211                      2335555555555543 33322  145555555555555 3444332  455555


Q ss_pred             eccCCcCcccCchhhhCCCCCCeeeCCCCcce
Q 046668          242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLS  273 (381)
Q Consensus       242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~  273 (381)
                      ++++|.++ .+|..+.  ..|+.|++++|++.
T Consensus       373 dLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        373 DVSRNALT-NLPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             ECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence            55555555 2333322  13555555555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=9e-20  Score=177.32  Aligned_cols=241  Identities=24%  Similarity=0.339  Sum_probs=132.9

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      ..|+++.+.++ .+|..+.  ++|+.|++++|.++ .+|..   .++|++|++++|.++ .+|..   .++|+.|++++|
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence            46788888887 5677664  37888888888887 34532   467888888888777 34432   345666666666


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccc-----------------cc
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISN-----------------IS  145 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------l~  145 (381)
                      .+. .+|..    ..+|+.|++++|.++ .+|.   ..++|+.|++++|.+.+ +|.....                 ..
T Consensus       273 ~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~  342 (788)
T PRK15387        273 PLT-HLPAL----PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPS  342 (788)
T ss_pred             chh-hhhhc----hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCcccccccccc
Confidence            654 34331    234555555555554 2232   12445555555555542 2221110                 12


Q ss_pred             ccccccccCCccccCCCCCCCccccceEEEEeccccchh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCCccc
Q 046668          146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSF  224 (381)
Q Consensus       146 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l  224 (381)
                      +|+.|+++.+....+|.....    .....+..+.+..+ ..+..|+.|++++|++.+ +|..   .++|+.|++++|.+
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~----L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~L  414 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSE----LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL  414 (788)
T ss_pred             ccceEecCCCccCCCCCCCcc----cceehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcC
Confidence            455555555555544432110    00001111111000 113456777777777763 3322   25677777777777


Q ss_pred             ccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCC
Q 046668          225 TGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP  277 (381)
Q Consensus       225 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  277 (381)
                      + .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus       415 s-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        415 T-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             C-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            6 45543   245667777777776 567667777777777777777776544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.81  E-value=3.8e-22  Score=189.23  Aligned_cols=245  Identities=25%  Similarity=0.349  Sum_probs=153.2

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      |+++|+++|+++ .+|+.+..+.+|+.++..+|.++ .+|..+....+|+.|....|.+. .+|....+++.|++|||..
T Consensus       243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence            566666777666 44566666677777777777665 55666666666777777777666 5555666677777777777


Q ss_pred             CcCcccCChhHHhcCCC-CcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           82 NEFVGNVPTWIGIRFSS-LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      |.+. .+|..++..... |+.|..+.|++....-..=...+.|+.|.+.+|.++...-..+.+..+|+.|+++++....+
T Consensus       320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            7765 566555433332 56666666665522211222345567777777777766666666666666666666655544


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS  240 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  240 (381)
                      |....                   ..++.|+.|+|++|+++ .+|.....++.|++|...+|++. ..| .+..+++|+.
T Consensus       399 pas~~-------------------~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  399 PASKL-------------------RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             CHHHH-------------------hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            43221                   23555777777777776 56667777777777777777776 666 5667777777


Q ss_pred             EeccCCcCcccCchhhhCCCCCCeeeCCCCcc
Q 046668          241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNL  272 (381)
Q Consensus       241 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l  272 (381)
                      +|++.|.++...-..-...++|++||+++|..
T Consensus       457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             EecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            77777777643322222336777777777763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.81  E-value=1.9e-21  Score=184.61  Aligned_cols=261  Identities=28%  Similarity=0.373  Sum_probs=199.9

Q ss_pred             CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668           24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN  103 (381)
Q Consensus        24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  103 (381)
                      ++|+.|+.++|.++...+..  .-.+|+++++++|.++ .+|+.+..+.+|+.++..+|.+. .+|..++ ...+|+.|.
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~  293 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLS  293 (1081)
T ss_pred             cchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHH
Confidence            44555666666655222221  1258899999999998 56788999999999999999996 8888887 688999999


Q ss_pred             cccccccccCCcCccCCCCCCEEeccCCcCCCCcCccc-ccccc-cccccccCCccccCCCCCCCccc-----cceEEEE
Q 046668          104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-SNISS-MVTANFSIGTDVQYPSVSTGKYV-----EDALLVL  176 (381)
Q Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~-L~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~  176 (381)
                      +..|.+. -+|....+++.|++|+|..|++. ..|+.+ ..... ++.++.+.+....+|........     ......+
T Consensus       294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            9999988 56667788999999999999997 555543 33332 56666666666555543332211     1223344


Q ss_pred             eccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhh
Q 046668          177 KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI  256 (381)
Q Consensus       177 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  256 (381)
                      ....+..+..+.+|+.|+|++|++...+...+.+++.|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~  448 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL  448 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence            5666777788999999999999998555567899999999999999999 88899999999999999999998 777 68


Q ss_pred             hCCCCCCeeeCCCCcceec-CCCCCCCCccCCCcccCCC
Q 046668          257 SSLTFLSRLKLSNNNLSGK-IPLSTQLQSFDPSSFTGNR  294 (381)
Q Consensus       257 ~~l~~L~~L~l~~N~l~~~-~~~~~~l~~l~~~~~~~n~  294 (381)
                      ..++.|+.+|++.|+++.. +|..--.++|+.++++||.
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            8999999999999999753 3333223789999999993

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=3.5e-19  Score=173.29  Aligned_cols=241  Identities=23%  Similarity=0.296  Sum_probs=155.5

Q ss_pred             CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668           24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN  103 (381)
Q Consensus        24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  103 (381)
                      .+-..|+++++.++ .+|..+.  .+|+.|++.+|.++ .+|.   .+++|++|++++|+++ .+|.    ..++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceee
Confidence            45778999999998 6787776  48999999999998 4564   3689999999999998 6775    246899999


Q ss_pred             cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccch
Q 046668          104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY  183 (381)
Q Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (381)
                      +++|.++ .+|..   ..+|+.|++++|+++ .+|..   .++|+.|+++.+....+|.....    .....+..+.+..
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~----L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSE----LCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCCccc----ccccccccCcccc
Confidence            9999998 44543   257899999999998 55653   46788999988877766553211    1111122222211


Q ss_pred             hh-hcccccEEEccCCcccccCchhhhc-----------------cccCcEEeCCCcccccccChhhhccCCCCEEeccC
Q 046668          184 NT-ILKLMRLIDLSKNKFSGEIPSEIMN-----------------LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSA  245 (381)
Q Consensus       184 ~~-~~~~L~~L~L~~n~~~~~~~~~~~~-----------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  245 (381)
                      +. .+..|+.|++++|+++. +|.....                 ..+|+.|++++|.++ .+|..   .++|+.|++++
T Consensus       337 LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~  411 (788)
T PRK15387        337 LPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSG  411 (788)
T ss_pred             ccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence            11 23468888888888874 3321111                 123455555555554 23322   24555666666


Q ss_pred             CcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCCCCC
Q 046668          246 NQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGS  298 (381)
Q Consensus       246 n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~~~  298 (381)
                      |++++ +|...   .+|+.|++++|+++ .+|.. ..++.+..+++++|.+++.
T Consensus       412 N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        412 NRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence            66552 34322   24566666666665 44432 3456677777888877765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1e-19  Score=177.91  Aligned_cols=226  Identities=23%  Similarity=0.413  Sum_probs=177.2

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|+.|++++|+++ .+|..+.  .+|++|++++|.++ .+|..+.  .+|++|++++|.+. .+|..+.  .+|+.|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            4789999999999 5676553  58999999999998 5676654  58999999999998 6676664  589999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++. .+|..+.   ++|+.|++++|.++. +|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|+++.+....+
T Consensus       271 ~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~L  340 (754)
T PRK15370        271 HNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTSL  340 (754)
T ss_pred             CCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCccccC
Confidence            99998 7887653   589999999999984 554442  47999999999998 4565443  5788888887765544


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS  240 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  240 (381)
                      |..                      .+++|+.|++++|+++ .+|..+  .+.|+.|++++|.++ .+|..+.  ..|+.
T Consensus       341 P~~----------------------l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~  392 (754)
T PRK15370        341 PAS----------------------LPPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQI  392 (754)
T ss_pred             Chh----------------------hcCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHH
Confidence            321                      1357999999999998 566555  368999999999999 6776654  47999


Q ss_pred             EeccCCcCcccCchhh----hCCCCCCeeeCCCCccee
Q 046668          241 IDFSANQLYGEIPQSI----SSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       241 L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~N~l~~  274 (381)
                      |++++|+++ .+|..+    ...+.+..+++.+|+++.
T Consensus       393 LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        393 MQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            999999998 555543    445789999999999873

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.78  E-value=5.1e-21  Score=147.64  Aligned_cols=182  Identities=26%  Similarity=0.463  Sum_probs=144.9

Q ss_pred             CCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCC
Q 046668           45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH  124 (381)
Q Consensus        45 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (381)
                      .++.+.+.|.|++|+++ .+|..+..+.+|+.|++.+|++. .+|..+. .+++|++|+++-|++. ..|..|+.+|.|+
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence            35778888888999888 67777888889999999999887 7888877 7889999999888888 8889999999999


Q ss_pred             EEeccCCcCCC-CcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccccc
Q 046668          125 VLDLADNHLSG-SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE  203 (381)
Q Consensus       125 ~L~L~~n~l~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~  203 (381)
                      .||+++|++.. .+|..|..                                           +..|+.|++++|.+. .
T Consensus       106 vldltynnl~e~~lpgnff~-------------------------------------------m~tlralyl~dndfe-~  141 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALYLGDNDFE-I  141 (264)
T ss_pred             hhhccccccccccCCcchhH-------------------------------------------HHHHHHHHhcCCCcc-c
Confidence            99999988863 35554444                                           444677778888887 7


Q ss_pred             CchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCC---CCCeeeCCCCcceecC
Q 046668          204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT---FLSRLKLSNNNLSGKI  276 (381)
Q Consensus       204 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~l~~N~l~~~~  276 (381)
                      +|...+.+++|+.|.+..|.+- .+|..++.+.+|++|.+.+|+++ .+|..+..+.   +=+.+.+.+|+|...+
T Consensus       142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            7888899999999999999888 88889999999999999999998 6666665543   2345666777775444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=1.7e-19  Score=163.25  Aligned_cols=255  Identities=20%  Similarity=0.229  Sum_probs=168.9

Q ss_pred             EEEcCCCcccc-cCCccccCCCCCCEEECcCCcCcc----cCCccCCCCCCCCEEEccCCccc------eeCCccccCCC
Q 046668            4 ILKLGENHFSG-EIPDCWMNWLDLLVLNLGNNNFTG----NIPISLGMLSSLQSLNLRKNSLS------GQIPASFQNCT   72 (381)
Q Consensus         4 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~   72 (381)
                      .|+|.++.+++ .....+..+.+|+.|+++++.++.    .++..+...+++++|+++++.+.      ..++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            57888888873 445556778889999999998853    24555667788999999998776      22345677889


Q ss_pred             CCCEEeCcCCcCcccCChhHHhcCCC---CcEEEcccccccc----cCCcCccCC-CCCCEEeccCCcCCCC----cCcc
Q 046668           73 KLVMLDIGENEFVGNVPTWIGIRFSS---LMILNLRSNKFRG----VLPNQLCGL-TSLHVLDLADNHLSGS----IPKC  140 (381)
Q Consensus        73 ~L~~L~L~~n~l~~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~  140 (381)
                      +|++|++++|.+.+..+..+. .+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            999999999988754444443 4444   9999999998873    222345556 8899999999998743    2334


Q ss_pred             cccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccC----chhhhccccCcE
Q 046668          141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI----PSEIMNLRALVS  216 (381)
Q Consensus       141 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~  216 (381)
                      +..++.|+.++++.+......               .......+...+.|+.|++++|.+.+..    +..+..+++|++
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~---------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~  225 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAG---------------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV  225 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHH---------------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence            555667777777665432100               0000111223457888888888776432    234556777888


Q ss_pred             EeCCCcccccccChhhhc-----cCCCCEEeccCCcCcc----cCchhhhCCCCCCeeeCCCCccee
Q 046668          217 LDLSCNSFTGRIPNSIGA-----LESILSIDFSANQLYG----EIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       217 L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                      |++++|.+++.....+..     .+.|++|++++|.++.    .+...+..+++|+.+++++|+++.
T Consensus       226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            888888777533333221     3678888888887752    233445566778888888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=1.3e-19  Score=164.05  Aligned_cols=255  Identities=20%  Similarity=0.274  Sum_probs=184.0

Q ss_pred             ccEEEcCCCcccc----cCCccccCCCCCCEEECcCCcCcc------cCCccCCCCCCCCEEEccCCccceeCCccccCC
Q 046668            2 IRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNNFTG------NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNC   71 (381)
Q Consensus         2 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   71 (381)
                      |+.|+++++.++.    .++..+...+++++++++++.+.+      .++..+..+++|++|++++|.+.+..+..+..+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            7899999998854    245556678889999999988762      234567778999999999999876666666655


Q ss_pred             CC---CCEEeCcCCcCccc----CChhHHhcC-CCCcEEEccccccccc----CCcCccCCCCCCEEeccCCcCCCC---
Q 046668           72 TK---LVMLDIGENEFVGN----VPTWIGIRF-SSLMILNLRSNKFRGV----LPNQLCGLTSLHVLDLADNHLSGS---  136 (381)
Q Consensus        72 ~~---L~~L~L~~n~l~~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---  136 (381)
                      .+   |++|++++|.+.+.    +...+. .+ ++|+.|++++|.+++.    .+..+..+++|++|++++|.+.+.   
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            55   99999999988631    222333 45 8999999999998832    334567778999999999998743   


Q ss_pred             -cCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhh-c----
Q 046668          137 -IPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM-N----  210 (381)
Q Consensus       137 -~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~----  210 (381)
                       ++..+...++|+.++++.+.......               ......+..+++|+.|++++|.+++.....+. .    
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~---------------~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~  248 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGA---------------SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP  248 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHH---------------HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence             33445566789999888775431100               00112234467899999999998864333332 2    


Q ss_pred             cccCcEEeCCCccccc----ccChhhhccCCCCEEeccCCcCccc----CchhhhCC-CCCCeeeCCCCcc
Q 046668          211 LRALVSLDLSCNSFTG----RIPNSIGALESILSIDFSANQLYGE----IPQSISSL-TFLSRLKLSNNNL  272 (381)
Q Consensus       211 l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~l~~N~l  272 (381)
                      .+.|++|++++|.+++    .+...+..+++|+++++++|.+...    ....+... +.|+.+++.+|+|
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            3799999999999873    2334556678999999999999844    44445555 6899999998875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=5.3e-20  Score=142.05  Aligned_cols=181  Identities=27%  Similarity=0.488  Sum_probs=147.6

Q ss_pred             CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668           22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI  101 (381)
Q Consensus        22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  101 (381)
                      ++.+.+.|.|++|+++ .+|..++.+.+|+.|++.+|++. .+|.+++.+++|+.|+++-|++. .+|.+++ .++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhh
Confidence            6677888899999998 67778899999999999999998 78889999999999999999987 8899988 7999999


Q ss_pred             EEccccccc-ccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccc
Q 046668          102 LNLRSNKFR-GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA  180 (381)
Q Consensus       102 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (381)
                      |||+.|.+. ..+|..|-.+..|+.|++++|.+. .+|..+++++                                   
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt-----------------------------------  150 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT-----------------------------------  150 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc-----------------------------------
Confidence            999998886 467888888899999999999987 7777776644                                   


Q ss_pred             cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccC---CCCEEeccCCcCcccC
Q 046668          181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE---SILSIDFSANQLYGEI  252 (381)
Q Consensus       181 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---~L~~L~L~~n~l~~~~  252 (381)
                              +|+.|.+..|++. ..|..++.+..|++|.+.+|+++ .+|..++.+.   +-+...+.+|.....+
T Consensus       151 --------~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  151 --------NLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             --------ceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence                    4677777788776 78889999999999999999998 7776665543   2234455566554333

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=9.5e-16  Score=149.36  Aligned_cols=116  Identities=39%  Similarity=0.638  Sum_probs=102.5

Q ss_pred             cccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCC
Q 046668          189 LMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLS  268 (381)
Q Consensus       189 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  268 (381)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceecCCCC--CCCCccCCCcccCC-CCCCCCCCCCC
Q 046668          269 NNNLSGKIPLS--TQLQSFDPSSFTGN-RLCGSPLPNNC  304 (381)
Q Consensus       269 ~N~l~~~~~~~--~~l~~l~~~~~~~n-~l~~~~~~~~c  304 (381)
                      +|+++|.+|..  ..+..+..+++.+| .+|+.|....|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            99999999864  22234556678888 68887654555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.45  E-value=1.6e-15  Score=137.74  Aligned_cols=127  Identities=27%  Similarity=0.439  Sum_probs=98.4

Q ss_pred             CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668           22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI  101 (381)
Q Consensus        22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  101 (381)
                      .+..-...||+.|++. .+|..+..+..|+.+.|..|.+. .+|.++.++..|.++||+.|++. .+|..++ . --|+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~-lpLkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-D-LPLKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-c-Cccee
Confidence            3455566788888887 77888888888888888888887 78888888888888888888887 7888876 3 35888


Q ss_pred             EEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCC
Q 046668          102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIG  155 (381)
Q Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~  155 (381)
                      |.+++|+++ .+|..++.++.|..||.+.|.+. .+|..++.+.+|+.+.+..+
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn  199 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN  199 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh
Confidence            888888888 67777778888888888888887 66666666666555544433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=7.9e-15  Score=133.26  Aligned_cols=195  Identities=25%  Similarity=0.419  Sum_probs=134.8

Q ss_pred             CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCE
Q 046668           46 MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHV  125 (381)
Q Consensus        46 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  125 (381)
                      .+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++ .+..|.+|+|+.|.++ .+|..+..++ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            3455566788888877 77777777778888888888877 7777777 7788888888888887 6676677665 788


Q ss_pred             EeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCc
Q 046668          126 LDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP  205 (381)
Q Consensus       126 L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  205 (381)
                      |.+++|+++ .+|..++....|..++++.|.....|                    ..+..+..|+.|.+..|++. .+|
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slp--------------------sql~~l~slr~l~vrRn~l~-~lp  205 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLP--------------------SQLGYLTSLRDLNVRRNHLE-DLP  205 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhhhch--------------------HHhhhHHHHHHHHHhhhhhh-hCC
Confidence            888888887 67777777777777777766654332                    23344566777777777776 455


Q ss_pred             hhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhC---CCCCCeeeCCCC
Q 046668          206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISS---LTFLSRLKLSNN  270 (381)
Q Consensus       206 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~l~~N  270 (381)
                      +.+..+ .|..||+|+|++. .+|-.|.+|++|++|.|.+|.++ ..|..++.   .+-.++|+..-+
T Consensus       206 ~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  206 EELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             HHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            555533 4777777777777 77777777777777777777777 34444432   223355555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.40  E-value=4.4e-13  Score=124.95  Aligned_cols=106  Identities=30%  Similarity=0.451  Sum_probs=62.8

Q ss_pred             EEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCC-CCCEEeCcCCcCcccCChhHHhcCCCCcEEEccc
Q 046668           28 VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCT-KLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS  106 (381)
Q Consensus        28 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  106 (381)
                      .++++.+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+. .+++|+.|++++
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence            4566666553 22223344566677777777666 4444455553 6777777777665 5554444 567777777777


Q ss_pred             ccccccCCcCccCCCCCCEEeccCCcCCCCcCc
Q 046668          107 NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK  139 (381)
Q Consensus       107 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  139 (381)
                      |.+. .++.....+++|+.|++++|++. .+|.
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~  203 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP  203 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCch
Confidence            7766 33443335667777777777766 4444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.35  E-value=1.2e-12  Score=121.96  Aligned_cols=196  Identities=35%  Similarity=0.508  Sum_probs=115.6

Q ss_pred             EEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCC-CCcEEEcccccccccCCcCccCCCCCCEEeccC
Q 046668           52 SLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFS-SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLAD  130 (381)
Q Consensus        52 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  130 (381)
                      .+++..|.+. .....+..++.++.|++.+|.+. .++.... ... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            4666666553 22333445566777777777766 5555554 342 6777777777766 4444566667777777777


Q ss_pred             CcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhc
Q 046668          131 NHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMN  210 (381)
Q Consensus       131 n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  210 (381)
                      |++. .+|......+.|+.++++.+....+|...                    ..+..|+.+.+++|.+. ..+..+..
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~--------------------~~~~~L~~l~~~~N~~~-~~~~~~~~  230 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI--------------------ELLSALEELDLSNNSII-ELLSSLSN  230 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccccCchhh--------------------hhhhhhhhhhhcCCcce-ecchhhhh
Confidence            7766 45554445666666666666554443321                    12344666666666433 34445666


Q ss_pred             cccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecC
Q 046668          211 LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKI  276 (381)
Q Consensus       211 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  276 (381)
                      +..+..+.+++|++. ..+..++.++.++.|++++|.++.. +. +..+.+++.|++++|.+....
T Consensus       231 ~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         231 LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             cccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccc
Confidence            666666666666665 3355566666677777777776633 22 556666777777776665443

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=3.8e-12  Score=124.29  Aligned_cols=109  Identities=37%  Similarity=0.539  Sum_probs=90.5

Q ss_pred             CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668           25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL  104 (381)
Q Consensus        25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  104 (381)
                      .++.|+|++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+. .+++|++|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEEC
Confidence            377888888888888888888888888888888888888888888888888888888888888888777 7888888888


Q ss_pred             ccccccccCCcCccCC-CCCCEEeccCCcCC
Q 046668          105 RSNKFRGVLPNQLCGL-TSLHVLDLADNHLS  134 (381)
Q Consensus       105 ~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~  134 (381)
                      ++|.+++.+|..+..+ .++..+++.+|...
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccc
Confidence            8888888888777653 46678888887644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=4.9e-13  Score=118.12  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=57.3

Q ss_pred             cccccEEEccCCcccccCc-hhhhccccCcEEeCCCcccccc-cChh-----hhccCCCCEEeccCCcCcc-cCchhhhC
Q 046668          187 LKLMRLIDLSKNKFSGEIP-SEIMNLRALVSLDLSCNSFTGR-IPNS-----IGALESILSIDFSANQLYG-EIPQSISS  258 (381)
Q Consensus       187 ~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~-~~~~~l~~  258 (381)
                      +..|+.|+|++|++..... ...+.++.|..|+++.+.+... .|+.     ....++|+.|+++.|++.. ..-..+..
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~  324 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT  324 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence            5568888888887763321 3466788888888888877642 2222     2456788888888888741 11234556


Q ss_pred             CCCCCeeeCCCCccee
Q 046668          259 LTFLSRLKLSNNNLSG  274 (381)
Q Consensus       259 l~~L~~L~l~~N~l~~  274 (381)
                      +++|+.|.+..|+++.
T Consensus       325 l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhhhhcccccccc
Confidence            6777788888887764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=3.1e-13  Score=119.35  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=17.6

Q ss_pred             ccccCcEEeCCCcccccccC--hhhhccCCCCEEeccCCcCc
Q 046668          210 NLRALVSLDLSCNSFTGRIP--NSIGALESILSIDFSANQLY  249 (381)
Q Consensus       210 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~  249 (381)
                      .+++|+.|+++.|++. ..+  ..+..+++|++|.+..|.+.
T Consensus       299 ~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            3455555555555553 111  12333444555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=2.7e-12  Score=103.42  Aligned_cols=128  Identities=24%  Similarity=0.339  Sum_probs=52.0

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccCC-CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCC
Q 046668           20 WMNWLDLLVLNLGNNNFTGNIPISLG-MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS   98 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~   98 (381)
                      +.+...+++|+|++|.|+.+.  .++ .+.+|+.|++++|.++. +. .+..+++|++|++++|.+. .++..+...+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            345667899999999998442  454 57899999999999984 33 5788999999999999998 666555446899


Q ss_pred             CcEEEcccccccccC-CcCccCCCCCCEEeccCCcCCCCcCc----cccccccccccccc
Q 046668           99 LMILNLRSNKFRGVL-PNQLCGLTSLHVLDLADNHLSGSIPK----CISNISSMVTANFS  153 (381)
Q Consensus        99 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~l~~~  153 (381)
                      |++|++++|.+.... -..+..+++|+.|++.+|+++.. +.    .+..+++|+.|+-.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence            999999999987432 24567789999999999998743 32    35678888888653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=6e-13  Score=114.41  Aligned_cols=239  Identities=18%  Similarity=0.214  Sum_probs=156.9

Q ss_pred             ccCCCCCCEEECcCCcCcc----cCCccCCCCCCCCEEEccCC---ccceeCCc-------cccCCCCCCEEeCcCCcCc
Q 046668           20 WMNWLDLLVLNLGNNNFTG----NIPISLGMLSSLQSLNLRKN---SLSGQIPA-------SFQNCTKLVMLDIGENEFV   85 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n---~l~~~~~~-------~~~~l~~L~~L~L~~n~l~   85 (381)
                      ...+..++.++|++|.+..    .+...+.+.++|++.++++-   ++...+|+       ++.++++|+++|||+|-+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4467789999999998862    23445667788888888763   22223343       4557789999999999875


Q ss_pred             ccCChh---HHhcCCCCcEEEcccccccccC-------------CcCccCCCCCCEEeccCCcCCCC----cCccccccc
Q 046668           86 GNVPTW---IGIRFSSLMILNLRSNKFRGVL-------------PNQLCGLTSLHVLDLADNHLSGS----IPKCISNIS  145 (381)
Q Consensus        86 ~~~~~~---~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~  145 (381)
                      ...+..   +...+..|++|+|.+|.+...-             ......-++|+++..++|++...    +...|...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            433322   2235788999999999876211             12234457899999999998743    223456667


Q ss_pred             ccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccccc----CchhhhccccCcEEeCCC
Q 046668          146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE----IPSEIMNLRALVSLDLSC  221 (381)
Q Consensus       146 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~  221 (381)
                      .|+.+.+.++++.+-..               ......+...++|+.|||.+|-++..    +...+..+++|++|+++.
T Consensus       186 ~leevr~~qN~I~~eG~---------------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGV---------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             ccceEEEecccccCchh---------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            77777666665432110               01122345578888888888877643    334566778888888888


Q ss_pred             cccccccChhh-----hccCCCCEEeccCCcCccc----CchhhhCCCCCCeeeCCCCcce
Q 046668          222 NSFTGRIPNSI-----GALESILSIDFSANQLYGE----IPQSISSLTFLSRLKLSNNNLS  273 (381)
Q Consensus       222 n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~  273 (381)
                      |.+......++     ...|.|+.|.+.+|.++..    +...+...+.|+.|++++|.+.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            88876544433     2357888888888887632    2223445678888888888873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=1.1e-11  Score=99.83  Aligned_cols=124  Identities=28%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             CccEEEcCCCcccccCCcccc-CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccc-cCCCCCCEEe
Q 046668            1 GIRILKLGENHFSGEIPDCWM-NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASF-QNCTKLVMLD   78 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~   78 (381)
                      ++++|+|.+|.|+.+  +.++ .+.+|+.|+|++|.|+.. . .+..++.|++|++++|.++. +++.+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            368899999999843  3455 588999999999999854 2 57889999999999999984 44445 4799999999


Q ss_pred             CcCCcCcccCC-hhHHhcCCCCcEEEcccccccccCC---cCccCCCCCCEEeccC
Q 046668           79 IGENEFVGNVP-TWIGIRFSSLMILNLRSNKFRGVLP---NQLCGLTSLHVLDLAD  130 (381)
Q Consensus        79 L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~  130 (381)
                      +++|++...-. ..+. .+++|+.|++.+|.+.....   ..+..+|+|+.||-..
T Consensus        95 L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   95 LSNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCcCCChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            99999863222 2333 68999999999999984321   2467789999998654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.24  E-value=1.9e-12  Score=109.34  Aligned_cols=203  Identities=21%  Similarity=0.225  Sum_probs=123.6

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC-cCcccCChhHHhcCCC
Q 046668           20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN-EFVGNVPTWIGIRFSS   98 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~   98 (381)
                      +.-+++|+++.++++.-..+ .+-...-+.|+++......++ ..| .+-.+..+.-...+.- ...|..-..+. ....
T Consensus       210 l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~-~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d-TWq~  285 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQ-DVP-SLLPETILADPSGSEPSTSNGSALVSAD-TWQE  285 (490)
T ss_pred             hHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccc-ccc-cccchhhhcCccCCCCCccCCceEEecc-hHhh
Confidence            34466777777777754422 222222366777776655443 111 1111222221111111 11121111221 2346


Q ss_pred             CcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEec
Q 046668           99 LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG  178 (381)
Q Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (381)
                      |+++||+.|.++ .+.+...-+|.++.|++++|.+...                                          
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v------------------------------------------  322 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV------------------------------------------  322 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceeee------------------------------------------
Confidence            888888888888 4556667778888888888887621                                          


Q ss_pred             cccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccC-chhhh
Q 046668          179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEI-PQSIS  257 (381)
Q Consensus       179 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~  257 (381)
                         ..+..+++|+.|||++|.++ ....+-..+.+.++|.|++|.+...  ..+..+-+|..||+++|+|.... -..++
T Consensus       323 ---~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG  396 (490)
T KOG1259|consen  323 ---QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIG  396 (490)
T ss_pred             ---hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccc
Confidence               11223566888888888876 5556667788889999999988622  33566778888999999886321 24578


Q ss_pred             CCCCCCeeeCCCCcceec
Q 046668          258 SLTFLSRLKLSNNNLSGK  275 (381)
Q Consensus       258 ~l~~L~~L~l~~N~l~~~  275 (381)
                      ++|.|+.+.+.+|++.+.
T Consensus       397 ~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  397 NLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             cccHHHHHhhcCCCcccc
Confidence            888899999999988753

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.15  E-value=2.8e-11  Score=121.04  Aligned_cols=267  Identities=20%  Similarity=0.190  Sum_probs=148.1

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCc--CcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNN--FTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +...+-+|.+. .++... .+++|++|-+..|.  +.....+.|..++.|+.|||++|.--+.+|+.++++.+||+|+++
T Consensus       526 rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  526 RRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             eEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            44555555554 333333 34567777777775  443444456677888888888776556778888888888888888


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC--CCcCcccccccccccccccCCcc-
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS--GSIPKCISNISSMVTANFSIGTD-  157 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~~~~~~~-  157 (381)
                      ++.+. .+|.++. ++.+|.+|++..+.-...++.....+++|++|.+......  ...-..+..+++|+.+....... 
T Consensus       604 ~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~  681 (889)
T KOG4658|consen  604 DTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL  681 (889)
T ss_pred             CCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH
Confidence            88776 7777777 6778888887776655455666666778888777665421  11112233344444333322221 


Q ss_pred             --ccCCCCCCC-ccccceE--EEEeccccchhhhcccccEEEccCCcccccCchhhh-----c-cccCcEEeCCCccccc
Q 046668          158 --VQYPSVSTG-KYVEDAL--LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM-----N-LRALVSLDLSCNSFTG  226 (381)
Q Consensus       158 --~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-----~-l~~L~~L~Ls~n~l~~  226 (381)
                        ..+...... .......  .............+.+|+.|.+.++.+.........     . ++++..+...++... 
T Consensus       682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-  760 (889)
T KOG4658|consen  682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-  760 (889)
T ss_pred             hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-
Confidence              000000000 0000000  001111233345577788888888877533222211     1 334444444444333 


Q ss_pred             ccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668          227 RIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       227 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                      ..+.+....++|+.|.+.++.....+.+....+..+..+-+..+.+.+
T Consensus       761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG  808 (889)
T ss_pred             cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence            333444456889999999888766665556666666665555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.14  E-value=4.6e-11  Score=79.30  Aligned_cols=60  Identities=35%  Similarity=0.507  Sum_probs=39.7

Q ss_pred             CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc
Q 046668           24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE   83 (381)
Q Consensus        24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   83 (381)
                      ++|++|++++|+++.+.++.|.++++|++|++++|.++...+++|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            356666666666665555666666666666666666666666666666666666666664

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=1.8e-11  Score=103.54  Aligned_cols=137  Identities=23%  Similarity=0.307  Sum_probs=86.2

Q ss_pred             ccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCC
Q 046668           18 DCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFS   97 (381)
Q Consensus        18 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~   97 (381)
                      ..+...+.|+++|||+|.|+ .+-+++.-++.++.|++++|.+.. +. .+..+++|+.|||++|.+. .+..+-- .+-
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLG  352 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHL-KLG  352 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHh-hhc
Confidence            33445566777777777776 444555566777777777777762 22 2667777777777777765 3433332 566


Q ss_pred             CCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCC-cCcccccccccccccccCCccccCC
Q 046668           98 SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS-IPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      ++++|.|+.|.+...  ..+.++-+|..||+++|++... --..+++++.|+.+.+-.+.....+
T Consensus       353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            777777777776633  3456666777777777777521 1245667777777766666555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=1.4e-10  Score=76.98  Aligned_cols=60  Identities=33%  Similarity=0.485  Sum_probs=56.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL   60 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   60 (381)
                      +|++|++++|+++.+.++.|.++++|++|++++|.++.+.+++|.++++|++|++++|.+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            589999999999977778899999999999999999989999999999999999999975

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.02  E-value=4.1e-11  Score=112.04  Aligned_cols=129  Identities=26%  Similarity=0.292  Sum_probs=80.8

Q ss_pred             CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668           22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI  101 (381)
Q Consensus        22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  101 (381)
                      .+..++.+.+..|.+.. .-..+..+++|+.|++.+|.+.. +...+..+++|++|++++|.+. .+...-  .+..|+.
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccchh--hccchhh
Confidence            45566666677776663 23345667778888888887763 3333667778888888888776 333221  4566778


Q ss_pred             EEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC-cccccccccccccccCCccc
Q 046668          102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP-KCISNISSMVTANFSIGTDV  158 (381)
Q Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~  158 (381)
                      |++++|.+...  ..+..++.|+.+++++|++...-+ . ...+.+++.+.+..+...
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            88888877743  345557778888888887763333 1 355555555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.98  E-value=7.6e-10  Score=110.87  Aligned_cols=126  Identities=26%  Similarity=0.387  Sum_probs=95.1

Q ss_pred             ccEEEcCCCc--ccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668            2 IRILKLGENH--FSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         2 L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      |++|-+..|.  +....++.|..++.|++|||++|.=-+.+|..++.|-+|++|+++++.++ .+|..+.++..|.+|++
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl  625 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL  625 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence            5677777775  55444555888999999999988755689999999999999999999998 89999999999999999


Q ss_pred             cCCcCcccCChhHHhcCCCCcEEEccccccc--ccCCcCccCCCCCCEEecc
Q 046668           80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFR--GVLPNQLCGLTSLHVLDLA  129 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~  129 (381)
                      ..+.....+| .+...+++|++|.+......  ...-..+..+.+|+.+...
T Consensus       626 ~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  626 EVTGRLESIP-GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccccccccc-chhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            9987664554 44436999999998665422  1122334445555554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.97  E-value=3.4e-11  Score=103.80  Aligned_cols=233  Identities=17%  Similarity=0.192  Sum_probs=161.6

Q ss_pred             CccEEEcCCCcccc----cCCccccCCCCCCEEECcCCc---CcccCC-------ccCCCCCCCCEEEccCCccceeCCc
Q 046668            1 GIRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNN---FTGNIP-------ISLGMLSSLQSLNLRKNSLSGQIPA   66 (381)
Q Consensus         1 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~---l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~   66 (381)
                      +++.++|++|.+..    .+...+.+.++|+..++++--   ....+|       .++-.++.|++|+||+|-+...-+.
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            36789999998754    333456677899999987642   222333       3345678999999999987644444


Q ss_pred             c----ccCCCCCCEEeCcCCcCcccCChhH-H------------hcCCCCcEEEccccccccc----CCcCccCCCCCCE
Q 046668           67 S----FQNCTKLVMLDIGENEFVGNVPTWI-G------------IRFSSLMILNLRSNKFRGV----LPNQLCGLTSLHV  125 (381)
Q Consensus        67 ~----~~~l~~L~~L~L~~n~l~~~~~~~~-~------------~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~  125 (381)
                      .    +..+..|++|.|.+|.+. ...... +            ..-++|+++...+|++...    +...|...+.|+.
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            3    356889999999999874 221111 1            1346799999999988632    2345677789999


Q ss_pred             EeccCCcCCCC----cCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccc
Q 046668          126 LDLADNHLSGS----IPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS  201 (381)
Q Consensus       126 L~L~~n~l~~~----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~  201 (381)
                      +.+..|.+...    +..++..+++|+.|++..+....-.+.               ..-..+..+++|+.|++++|.+.
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~---------------~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV---------------ALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---------------HHHHHhcccchheeecccccccc
Confidence            99999988632    235678899999999887765421110               01122344778999999999987


Q ss_pred             ccCchhh-----hccccCcEEeCCCcccccc----cChhhhccCCCCEEeccCCcCc
Q 046668          202 GEIPSEI-----MNLRALVSLDLSCNSFTGR----IPNSIGALESILSIDFSANQLY  249 (381)
Q Consensus       202 ~~~~~~~-----~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  249 (381)
                      ..-..+|     ...+.|+.|.+++|.++..    +.......+.|..|+|++|.+.
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            5544433     3578999999999998843    2233456799999999999993

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.96  E-value=9.7e-11  Score=109.54  Aligned_cols=241  Identities=23%  Similarity=0.253  Sum_probs=153.0

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ++.+.+..|.+.. .-..+..+++|+.|++.+|.|..+.. .+..+++|++|++++|.|+.+.  .+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheecc
Confidence            4456677777763 33446788999999999999985433 3677899999999999998543  366777899999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      |.+. .+.. +. .+..|+.+++++|.+....+ . ...+.+++.+++++|.+...  ..+..+..+..+++..+.....
T Consensus       150 N~i~-~~~~-~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  150 NLIS-DISG-LE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             Ccch-hccC-Cc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence            9987 4443 22 37889999999999885544 2 57788899999999987632  2222333333222222222211


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcc--cccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILK--LMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                      ...                     ....  +|+.+++++|++. ..+..+..+..+..|++.+|++...-  .+...+.+
T Consensus       224 ~~l---------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~  279 (414)
T KOG0531|consen  224 EGL---------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKL  279 (414)
T ss_pred             cCc---------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchH
Confidence            111                     0111  3677778887776 33355667777778888877776321  12334555


Q ss_pred             CEEeccCCcCccc---Cchh-hhCCCCCCeeeCCCCcceecC
Q 046668          239 LSIDFSANQLYGE---IPQS-ISSLTFLSRLKLSNNNLSGKI  276 (381)
Q Consensus       239 ~~L~L~~n~l~~~---~~~~-l~~l~~L~~L~l~~N~l~~~~  276 (381)
                      ..+..+.|.+...   .... ....+.++.+.+.+|+.....
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  280 SELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             HHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            6666666665421   1111 345567777777777765433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.69  E-value=2.3e-10  Score=107.50  Aligned_cols=179  Identities=29%  Similarity=0.354  Sum_probs=104.2

Q ss_pred             CccccCCCCCCEEECcCCcCcccCCccCCCC-CCCCEEEccCCccc----------eeCCccccCCCCCCEEeCcCCcCc
Q 046668           17 PDCWMNWLDLLVLNLGNNNFTGNIPISLGML-SSLQSLNLRKNSLS----------GQIPASFQNCTKLVMLDIGENEFV   85 (381)
Q Consensus        17 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~   85 (381)
                      |-.+..++.|++|.|.++.+.. . ..+..+ ..|++|... |.+.          +.+.+++. ...|.+.+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence            3345567777777777777752 1 111111 245555332 2222          11112221 125777777888776


Q ss_pred             ccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCC
Q 046668           86 GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST  165 (381)
Q Consensus        86 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~  165 (381)
                       .+...+- -++.|+.|+|+.|+++..  ..+..+++|++|||++|.+. .+|..-          +.            
T Consensus       178 -~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~----------~~------------  230 (1096)
T KOG1859|consen  178 -LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLS----------MV------------  230 (1096)
T ss_pred             -hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccc----------hh------------
Confidence             5554444 577888888888888755  36777888888888888876 333210          00            


Q ss_pred             CccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccC-hhhhccCCCCEEecc
Q 046668          166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP-NSIGALESILSIDFS  244 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~  244 (381)
                                           -..|+.|.+.+|.++.  -..+.++.+|+.||++.|-+.+... ..+..+..|+.|.|.
T Consensus       231 ---------------------gc~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  231 ---------------------GCKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             ---------------------hhhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence                                 1126777777777652  1235677777888888877764211 123445667777777


Q ss_pred             CCcCc
Q 046668          245 ANQLY  249 (381)
Q Consensus       245 ~n~l~  249 (381)
                      +|.+.
T Consensus       288 GNPl~  292 (1096)
T KOG1859|consen  288 GNPLC  292 (1096)
T ss_pred             CCccc
Confidence            77775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=7.2e-09  Score=87.85  Aligned_cols=113  Identities=19%  Similarity=0.272  Sum_probs=70.4

Q ss_pred             ccCCCCCCEEECcCCcCcccC-CccCC-CCCCCCEEEccCCccce--eCCccccCCCCCCEEeCcCCcCcccCChhHHhc
Q 046668           20 WMNWLDLLVLNLGNNNFTGNI-PISLG-MLSSLQSLNLRKNSLSG--QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR   95 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~   95 (381)
                      +...+.++.|.+.++.|...- ...|+ ..+.++++||.+|.|+.  .+...+.+||.|++|+++.|++...|...- ..
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p  119 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP  119 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-cc
Confidence            334445556666666664211 11222 35678888888888762  233445788888888888888764443221 14


Q ss_pred             CCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcC
Q 046668           96 FSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHL  133 (381)
Q Consensus        96 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l  133 (381)
                      ..+|++|.|.+..+... ....+..+|.++.|.++.|.+
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            66788888877776532 234456778888888888744

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=2.9e-09  Score=90.20  Aligned_cols=180  Identities=19%  Similarity=0.169  Sum_probs=96.7

Q ss_pred             ccEEEcCCCcccc-cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-ccee-CCccccCCCCCCEEe
Q 046668            2 IRILKLGENHFSG-EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-LSGQ-IPASFQNCTKLVMLD   78 (381)
Q Consensus         2 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~   78 (381)
                      ||+|||+...|+- .+...+..|.+|+.|.|.++.+.+.+...++.-.+|+.|+++.+. ++.. ..--|.+|..|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5666666666552 223335566677777777777766666666666677777776642 2211 111245666677777


Q ss_pred             CcCCcCcccCChh-HHhcCCCCcEEEccccccc---ccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccC
Q 046668           79 IGENEFVGNVPTW-IGIRFSSLMILNLRSNKFR---GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI  154 (381)
Q Consensus        79 L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~  154 (381)
                      ++.|.+....... +.+--++|..|+|+++.-.   ..+..-...+|+|.+|||++|..-.                   
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~-------------------  327 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK-------------------  327 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-------------------
Confidence            7766654222111 1111245666666554311   1111122445666777776654321                   


Q ss_pred             CccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchh---hhccccCcEEeCCCcccc
Q 046668          155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSE---IMNLRALVSLDLSCNSFT  225 (381)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~Ls~n~l~  225 (381)
                                             ......+..++.|++|.++.|..  ++|..   +...|.|.+|+..++--.
T Consensus       328 -----------------------~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  328 -----------------------NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             -----------------------chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence                                   11222333466678888877753  44543   566788888888776433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.40  E-value=4.2e-08  Score=82.24  Aligned_cols=238  Identities=16%  Similarity=0.186  Sum_probs=128.9

Q ss_pred             cCCCCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCcc---ceeC-------CccccCCCCCCEEeCcCCcCcc
Q 046668           21 MNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSL---SGQI-------PASFQNCTKLVMLDIGENEFVG   86 (381)
Q Consensus        21 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~-------~~~~~~l~~L~~L~L~~n~l~~   86 (381)
                      .-+..+..++||+|.|...    +...+.+-.+|+..+++.--.   ...+       ..++-+||+|+..+||+|-+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3467788888998888633    333455567888887775311   1122       2345688999999999998865


Q ss_pred             cCChhHH---hcCCCCcEEEcccccccccCC-------------cCccCCCCCCEEeccCCcCCCCcCcc-----ccccc
Q 046668           87 NVPTWIG---IRFSSLMILNLRSNKFRGVLP-------------NQLCGLTSLHVLDLADNHLSGSIPKC-----ISNIS  145 (381)
Q Consensus        87 ~~~~~~~---~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~  145 (381)
                      ..|..+.   +.-..|++|.+++|.+...-.             .....-|.|++.+...|++.. .+..     +..-.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhc
Confidence            6664433   234679999999988752211             123445789999999999872 2321     11113


Q ss_pred             ccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccC----chhhhccccCcEEeCCC
Q 046668          146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI----PSEIMNLRALVSLDLSC  221 (381)
Q Consensus       146 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~Ls~  221 (381)
                      .|+.+.+.++++.+-..              .......+....+|+.|++.+|-++...    ...+..++.|++|.+..
T Consensus       186 ~lk~vki~qNgIrpegv--------------~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD  251 (388)
T COG5238         186 NLKEVKIQQNGIRPEGV--------------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND  251 (388)
T ss_pred             CceeEEeeecCcCcchh--------------HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence            44444444443321000              0001111233555666677666665322    22344555666666666


Q ss_pred             cccccccChhh------hccCCCCEEeccCCcCcccC-ch----hh--hCCCCCCeeeCCCCcce
Q 046668          222 NSFTGRIPNSI------GALESILSIDFSANQLYGEI-PQ----SI--SSLTFLSRLKLSNNNLS  273 (381)
Q Consensus       222 n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~-~~----~l--~~l~~L~~L~l~~N~l~  273 (381)
                      |.++.....++      ...++|..|-..+|.+.+.+ ..    .+  ..+|-|..|.+.+|.+.
T Consensus       252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            66654333221      12355666666666543211 11    11  23455555556666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=3.9e-09  Score=99.45  Aligned_cols=123  Identities=29%  Similarity=0.348  Sum_probs=66.9

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCc-cccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPA-SFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~   81 (381)
                      ...+.++|.+. .+-.++.-++.|+.|+|++|++++..  .+..|+.|++|||++|.+. .+|. ...++. |+.|.+++
T Consensus       167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence            34455556555 34445555666666666666665332  5556666666666666665 3332 223333 66666666


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHL  133 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l  133 (381)
                      |.++ .+- ++- ++.+|+.||++.|-+.+... ..++.+..|+.|.|.+|.+
T Consensus       242 N~l~-tL~-gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALT-TLR-GIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHH-hhh-hHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6654 222 222 46666666666666553211 2234445566666666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.34  E-value=2.2e-08  Score=75.17  Aligned_cols=102  Identities=23%  Similarity=0.328  Sum_probs=56.6

Q ss_pred             EEEcCCCcccccCCccc---cCCCCCCEEECcCCcCcccCCccCC-CCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668            4 ILKLGENHFSGEIPDCW---MNWLDLLVLNLGNNNFTGNIPISLG-MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         4 ~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      .+||+.|.+- -++++.   .+..+|...+|++|.+. ..|..|. ..+.+++|++++|.++ .+|..+..++.|+.|++
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            3555555543 233332   33445555566666665 3444443 2346666666666666 55666666666666666


Q ss_pred             cCCcCcccCChhHHhcCCCCcEEEccccccc
Q 046668           80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFR  110 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  110 (381)
                      +.|++. ..|.-++ .+.++..|+..+|.+.
T Consensus       108 ~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIA-PLIKLDMLDSPENARA  136 (177)
T ss_pred             ccCccc-cchHHHH-HHHhHHHhcCCCCccc
Confidence            666665 5555555 4556666666555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3e-08  Score=84.21  Aligned_cols=179  Identities=18%  Similarity=0.155  Sum_probs=118.1

Q ss_pred             CCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCc-CCC-CcCcccccccccccc
Q 046668           73 KLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNH-LSG-SIPKCISNISSMVTA  150 (381)
Q Consensus        73 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~l  150 (381)
                      .|+++||++..++...-..+...|.+|+.|.|.++.+.+.+...+++-.+|+.|+++.+. ++. .....+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588888888877644444555578888888888888887777777777888888888765 221 122346788888888


Q ss_pred             cccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccc--c-cCchhhhccccCcEEeCCCccc-cc
Q 046668          151 NFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS--G-EIPSEIMNLRALVSLDLSCNSF-TG  226 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~--~-~~~~~~~~l~~L~~L~Ls~n~l-~~  226 (381)
                      ++++|.....- ..                ...-.--+.|+.|+++++.-.  . .+..-..++++|.+||||.|.. +.
T Consensus       266 NlsWc~l~~~~-Vt----------------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  266 NLSWCFLFTEK-VT----------------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             CchHhhccchh-hh----------------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence            88888654210 00                000011345788888876421  1 1222346789999999998764 32


Q ss_pred             ccChhhhccCCCCEEeccCCcCcccCchh---hhCCCCCCeeeCCCC
Q 046668          227 RIPNSIGALESILSIDFSANQLYGEIPQS---ISSLTFLSRLKLSNN  270 (381)
Q Consensus       227 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~N  270 (381)
                      ..-..|-.++.|++|.++.|..  ++|..   +...|+|.+||+.++
T Consensus       329 ~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  329 DCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            2233466788999999998874  34443   467788999998875

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.29  E-value=1.7e-06  Score=69.64  Aligned_cols=103  Identities=21%  Similarity=0.212  Sum_probs=53.3

Q ss_pred             CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcc--cCChhHHhcCCCCcEE
Q 046668           25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG--NVPTWIGIRFSSLMIL  102 (381)
Q Consensus        25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L  102 (381)
                      +...+||++|.+..  -+.|..++.|.+|.+.+|.|+.+-|.--.-+++|+.|.|.+|.+..  .+.. +. .+++|++|
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La-~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LA-SCPKLEYL  118 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hc-cCCcccee
Confidence            45556666665542  1245556666666666666665544444445556666666665541  1111 11 35566666


Q ss_pred             EcccccccccCC---cCccCCCCCCEEeccCC
Q 046668          103 NLRSNKFRGVLP---NQLCGLTSLHVLDLADN  131 (381)
Q Consensus       103 ~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n  131 (381)
                      .+-+|.+...-.   ..+..+|+|++||...-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            666655542211   23455566666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.24  E-value=6.9e-08  Score=72.58  Aligned_cols=107  Identities=29%  Similarity=0.424  Sum_probs=84.9

Q ss_pred             ccEEEcCCCcccccCCcccc-CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            2 IRILKLGENHFSGEIPDCWM-NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      |+..+|++|.+. ..|..|. .++.+++|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            567899999998 5676664 5779999999999999 78888999999999999999998 678888889999999999


Q ss_pred             CCcCcccCChhHHhcCCCCc-EEEcccccccccCC
Q 046668           81 ENEFVGNVPTWIGIRFSSLM-ILNLRSNKFRGVLP  114 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~  114 (381)
                      +|.+. .+|..++  .+.+. ..++.++.+.+.-+
T Consensus       132 ~na~~-eid~dl~--~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  132 ENARA-EIDVDLF--YSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             CCccc-cCcHHHh--ccccHHHHHhcCCcccccCc
Confidence            99887 7776654  33322 23345555554444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=7e-07  Score=75.06  Aligned_cols=216  Identities=16%  Similarity=0.168  Sum_probs=121.6

Q ss_pred             CCCCCCCCEEEccCCccceeCCc----cccCCCCCCEEeCcCCcCc---ccCChhH------HhcCCCCcEEEccccccc
Q 046668           44 LGMLSSLQSLNLRKNSLSGQIPA----SFQNCTKLVMLDIGENEFV---GNVPTWI------GIRFSSLMILNLRSNKFR  110 (381)
Q Consensus        44 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~---~~~~~~~------~~~l~~L~~L~L~~n~l~  110 (381)
                      +..+..+++++||+|.|...-..    .+.+-.+|+..++++--..   ..+++.+      ..+|++|+..+|++|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34478999999999988644333    3455678888888764221   1122211      116899999999999998


Q ss_pred             ccCCcC----ccCCCCCCEEeccCCcCCCCcCc----cccccc---------ccccccccCCccccCCCCCCCccccceE
Q 046668          111 GVLPNQ----LCGLTSLHVLDLADNHLSGSIPK----CISNIS---------SMVTANFSIGTDVQYPSVSTGKYVEDAL  173 (381)
Q Consensus       111 ~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~---------~L~~l~~~~~~~~~~~~~~~~~~~~~~~  173 (381)
                      ...|..    ++.-+.|.+|.+++|.+...-..    ++.++.         .|+......+..-..+            
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs------------  173 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS------------  173 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc------------
Confidence            666643    46668899999999987622111    221111         1111111111000000            


Q ss_pred             EEEeccccchhhhcccccEEEccCCcccccCch-----hhhccccCcEEeCCCcccccccC----hhhhccCCCCEEecc
Q 046668          174 LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPS-----EIMNLRALVSLDLSCNSFTGRIP----NSIGALESILSIDFS  244 (381)
Q Consensus       174 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~  244 (381)
                         ....-..+..-..|+.+.+..|.|......     .+..+.+|+.|||..|.++....    .++...+.|+.|.+.
T Consensus       174 ---~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         174 ---KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             ---HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence               000001122235677777777766532111     23456778888888887764322    223344667888888


Q ss_pred             CCcCcccCchh----h--hCCCCCCeeeCCCCccee
Q 046668          245 ANQLYGEIPQS----I--SSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       245 ~n~l~~~~~~~----l--~~l~~L~~L~l~~N~l~~  274 (381)
                      .|.++..-...    +  ...|+|..|...+|...+
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            77765322211    1  234677777777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.16  E-value=8e-07  Score=87.24  Aligned_cols=133  Identities=15%  Similarity=0.183  Sum_probs=95.6

Q ss_pred             CccEEEcCCCcccc-cCCccccC-CCCCCEEECcCCcCcc-cCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEE
Q 046668            1 GIRILKLGENHFSG-EIPDCWMN-WLDLLVLNLGNNNFTG-NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVML   77 (381)
Q Consensus         1 ~L~~L~l~~n~l~~-~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   77 (381)
                      +|++||+++..... .=|..++. +|.|++|.+++-.+.. .......++++|..||++++.++..  ..++++++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            57899998875332 22333444 8999999999877642 2334456789999999999999844  678899999999


Q ss_pred             eCcCCcCcc-cCChhHHhcCCCCcEEEcccccccccC------CcCccCCCCCCEEeccCCcCCCC
Q 046668           78 DIGENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVL------PNQLCGLTSLHVLDLADNHLSGS  136 (381)
Q Consensus        78 ~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~  136 (381)
                      .+.+=.+.. ..-..++ .+.+|+.||+|........      -+.-..+|+|+.||.+++.+...
T Consensus       201 ~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             hccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            998876652 1124566 7999999999976544211      12334589999999999887643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=2.3e-06  Score=51.95  Aligned_cols=36  Identities=25%  Similarity=0.540  Sum_probs=14.5

Q ss_pred             CCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCc
Q 046668           49 SLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV   85 (381)
Q Consensus        49 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   85 (381)
                      +|++|++++|.++ .+|..+.+|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.13  E-value=9.5e-06  Score=62.71  Aligned_cols=124  Identities=15%  Similarity=0.229  Sum_probs=72.8

Q ss_pred             CccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcC
Q 046668           17 PDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRF   96 (381)
Q Consensus        17 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l   96 (381)
                      ..+|.++.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +......+|.++++|+.+.+.+ .+. .++...+..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence            45688888999999875 566677888999989999999875 6667778899998899999976 443 5666666568


Q ss_pred             CCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccc
Q 046668           97 SSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM  147 (381)
Q Consensus        97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  147 (381)
                      ++|+.+++..+ +.......|.+. +|+.+.+.. .+......+|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            89999999765 554556778887 889888876 3333445667666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=2.9e-06  Score=51.49  Aligned_cols=36  Identities=42%  Similarity=0.652  Sum_probs=19.8

Q ss_pred             CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccc
Q 046668           25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS   61 (381)
Q Consensus        25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   61 (381)
                      +|++|++++|.|+ .+|..+++|++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5566666666665 33434566666666666666555

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=2.8e-06  Score=72.46  Aligned_cols=212  Identities=17%  Similarity=0.103  Sum_probs=112.6

Q ss_pred             CCCCCEEEccCCccceeCC-ccc-cCCCCCCEEeCcCCcCcc--cCChhHHhcCCCCcEEEcccccccccCCcCccCCCC
Q 046668           47 LSSLQSLNLRKNSLSGQIP-ASF-QNCTKLVMLDIGENEFVG--NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS  122 (381)
Q Consensus        47 l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  122 (381)
                      +..++-|.+.++.|...-. ..| ..+..++.+||.+|++..  .+ ..+..++|.|++|+|+.|.+...+...-..+.+
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            3445556666665542211 112 345678889999998752  12 223346888999999988887433322145678


Q ss_pred             CCEEeccCCcCCCCc-CcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccc
Q 046668          123 LHVLDLADNHLSGSI-PKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS  201 (381)
Q Consensus       123 L~~L~L~~n~l~~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~  201 (381)
                      |++|.|.+..+.-.. ......++.++.++++.+...++.......              +.  .-+.+..|++..|...
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~--------------e~--~s~~v~tlh~~~c~~~  186 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI--------------ED--WSTEVLTLHQLPCLEQ  186 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc--------------cc--cchhhhhhhcCCcHHH
Confidence            888888888775332 234456667777766655433221110000              00  0011223333332221


Q ss_pred             cc--CchhhhccccCcEEeCCCcccccc-cChhhhccCCCCEEeccCCcCccc-CchhhhCCCCCCeeeCCCCcceec
Q 046668          202 GE--IPSEIMNLRALVSLDLSCNSFTGR-IPNSIGALESILSIDFSANQLYGE-IPQSISSLTFLSRLKLSNNNLSGK  275 (381)
Q Consensus       202 ~~--~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~  275 (381)
                      .-  ....-..++++..+-+..|.+... ....+..++.+.-|+|+.|+|.+- .-+.+..++.|+.|.+++|++...
T Consensus       187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            00  001113456666666666655432 112334456666777777776532 124566677777777777777644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=1.6e-05  Score=64.09  Aligned_cols=125  Identities=18%  Similarity=0.202  Sum_probs=92.6

Q ss_pred             CCEEECcCCcCcccCCccCC-CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668           26 LLVLNLGNNNFTGNIPISLG-MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL  104 (381)
Q Consensus        26 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  104 (381)
                      =+.++|.+.++..+..  ++ -+.+...+||++|.+.  ..+.|..+++|.+|.+++|.++ .+...+..-+++|+.|.|
T Consensus        21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             ccccccccccccchhh--ccccccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence            5667777776653222  22 2457889999999986  2345788999999999999998 777777767899999999


Q ss_pred             ccccccccC-CcCccCCCCCCEEeccCCcCCCCcC---cccccccccccccccCC
Q 046668          105 RSNKFRGVL-PNQLCGLTSLHVLDLADNHLSGSIP---KCISNISSMVTANFSIG  155 (381)
Q Consensus       105 ~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~l~~~~~  155 (381)
                      .+|.+.... -..+..+|+|++|.+-+|.++..--   ..+..+++|+.++++.-
T Consensus        96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            999987321 2346778999999999999873221   24567888888877643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=6.5e-05  Score=68.49  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCC
Q 046668           20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSL   99 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   99 (381)
                      +..+++++.|++++|.++ .+| .+.  .+|++|.++++.-...+|+.+  .++|++|++++|.....+|       .+|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP-~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP-VLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC-CCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------ccc
Confidence            345788889999988877 455 222  368888888754333566544  2578888888873222344       357


Q ss_pred             cEEEcccccccccCCcCccCC-CCCCEEeccC
Q 046668          100 MILNLRSNKFRGVLPNQLCGL-TSLHVLDLAD  130 (381)
Q Consensus       100 ~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~  130 (381)
                      +.|++..+....     +..+ ++|+.|.+.+
T Consensus       115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~  141 (426)
T PRK15386        115 RSLEIKGSATDS-----IKNVPNGLTSLSINS  141 (426)
T ss_pred             ceEEeCCCCCcc-----cccCcchHhheeccc
Confidence            777776554331     1222 2566776644

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.90  E-value=3e-05  Score=59.91  Aligned_cols=117  Identities=21%  Similarity=0.234  Sum_probs=70.0

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|+.+.+.. .+..+...+|.++++|+.+.+.++ +..+...+|.++.+++++.+.+ .+.......|.++++|+.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            367788875 566677788999999999999886 7767778899998999999976 5555677889999999999998


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH  124 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (381)
                      .+ +. .++...+..+ +|+.+.+.+ .+.......|.++++|+
T Consensus        90 ~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   90 SN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            76 54 6666666566 999999876 44445567777777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.85  E-value=4.9e-05  Score=69.27  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=46.7

Q ss_pred             CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccc-cccccCCcCccCCCCCC
Q 046668           46 MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSN-KFRGVLPNQLCGLTSLH  124 (381)
Q Consensus        46 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  124 (381)
                      .+.++++|++++|.++ .+|.   --.+|++|.++++.-...+|..+.   ++|++|++++| .+. .+|      ++|+
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------ESVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------cccc
Confidence            3678888888888776 4452   123588888887544346665442   57888888877 443 333      3467


Q ss_pred             EEeccCCcC
Q 046668          125 VLDLADNHL  133 (381)
Q Consensus       125 ~L~L~~n~l  133 (381)
                      +|++..+..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            777765543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=3.2e-05  Score=76.20  Aligned_cols=80  Identities=23%  Similarity=0.349  Sum_probs=52.9

Q ss_pred             CCCCEEeCcCCcCcc-cCChhHHhcCCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcCCCCcCccccccccccc
Q 046668           72 TKLVMLDIGENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVT  149 (381)
Q Consensus        72 ~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  149 (381)
                      .+|++||+++..... .=|..++..+|+|+.|.+++-.+... .......+|+|..||+++.+++..  .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            578888888865431 22345665688899988877555421 223446678889999998888733  56677777766


Q ss_pred             cccc
Q 046668          150 ANFS  153 (381)
Q Consensus       150 l~~~  153 (381)
                      |.+.
T Consensus       200 L~mr  203 (699)
T KOG3665|consen  200 LSMR  203 (699)
T ss_pred             Hhcc
Confidence            6543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.55  E-value=3.6e-05  Score=64.72  Aligned_cols=61  Identities=23%  Similarity=0.377  Sum_probs=26.7

Q ss_pred             CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCC--ccceeCCccccCCCCCCEEeCcCCcC
Q 046668           22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKN--SLSGQIPASFQNCTKLVMLDIGENEF   84 (381)
Q Consensus        22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l   84 (381)
                      .+..|+.|++.+..++..  ..|..|++|++|.++.|  .+.+.++--...+++|+++++++|++
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            344444444444444311  12334455555555555  33333333333445555555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.49  E-value=6.3e-05  Score=63.30  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCC--cCcccCCccCCCCCCCCEEEccCCccceeCCcc---ccCCCCCCE
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNN--NFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS---FQNCTKLVM   76 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~   76 (381)
                      |+.|++.+..++..  ..|-.+++|+.|.++.|  ++.+-++.-...+++|++|++++|++..  ++.   +..+.+|..
T Consensus        45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS  120 (260)
T ss_pred             hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence            45566666665532  23557889999999999  6665555555667999999999999872  333   456677888


Q ss_pred             EeCcCCcCc
Q 046668           77 LDIGENEFV   85 (381)
Q Consensus        77 L~L~~n~l~   85 (381)
                      ||+.+|..+
T Consensus       121 Ldl~n~~~~  129 (260)
T KOG2739|consen  121 LDLFNCSVT  129 (260)
T ss_pred             hhcccCCcc
Confidence            888887655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=1.4e-05  Score=67.74  Aligned_cols=97  Identities=22%  Similarity=0.192  Sum_probs=61.1

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCC--ccccCCCCCCEEeC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIP--ASFQNCTKLVMLDI   79 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L   79 (381)
                      ++.|..++|.++.+  ....+++.|++|.|+-|+|+...  .|..|+.|++|+|..|.|.. +.  ..+.++++|+.|.|
T Consensus        21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhh
Confidence            45677777777632  22456788888888888877433  35567788888888887762 22  23567777888887


Q ss_pred             cCCcCcccCChh----HHhcCCCCcEEE
Q 046668           80 GENEFVGNVPTW----IGIRFSSLMILN  103 (381)
Q Consensus        80 ~~n~l~~~~~~~----~~~~l~~L~~L~  103 (381)
                      ..|.-.|.-+..    +..-+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            777655443322    222356666664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=2.9e-05  Score=65.81  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             CCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCE
Q 046668           47 LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHV  125 (381)
Q Consensus        47 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  125 (381)
                      +.+.++|++-++.+.++  .....|+.|++|.|+-|+++ .+....  .|++|++|+|+.|.|....- ..+.++|+|++
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl~--rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPLQ--RCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhHH--HHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            34455566666555422  22345666666666666665 332221  45666666666666552211 23455666666


Q ss_pred             EeccCCcCCCCcCc-----cccccccccccc
Q 046668          126 LDLADNHLSGSIPK-----CISNISSMVTAN  151 (381)
Q Consensus       126 L~L~~n~l~~~~~~-----~~~~l~~L~~l~  151 (381)
                      |.|..|.-.+.-+.     .+..+++|+.|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            66666665544332     233455555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.41  E-value=0.00055  Score=65.63  Aligned_cols=113  Identities=21%  Similarity=0.130  Sum_probs=67.8

Q ss_pred             CCCCCCEEECcCCc-Cccc-CCccCCCCCCCCEEEccCC-ccceeC----CccccCCCCCCEEeCcCCc-CcccCChhHH
Q 046668           22 NWLDLLVLNLGNNN-FTGN-IPISLGMLSSLQSLNLRKN-SLSGQI----PASFQNCTKLVMLDIGENE-FVGNVPTWIG   93 (381)
Q Consensus        22 ~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~   93 (381)
                      .++.|+.|.+..+. +... .-.....++.|++|+++++ ......    ......+++|+.|+++.+. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46788888887774 3321 2233456788888888763 111111    1234566788888888887 4433334444


Q ss_pred             hcCCCCcEEEccccc-cccc-CCcCccCCCCCCEEeccCCcCC
Q 046668           94 IRFSSLMILNLRSNK-FRGV-LPNQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus        94 ~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~  134 (381)
                      ..+++|++|.+.++. ++.. +......+++|++|+++++...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            347788888876665 3321 1233456778888888877653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.19  E-value=0.0022  Score=32.29  Aligned_cols=20  Identities=25%  Similarity=0.569  Sum_probs=9.9

Q ss_pred             CccEEEcCCCcccccCCcccc
Q 046668            1 GIRILKLGENHFSGEIPDCWM   21 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~   21 (381)
                      +|++||+++|+++ .+|..|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.07  E-value=0.00012  Score=65.68  Aligned_cols=87  Identities=21%  Similarity=0.120  Sum_probs=42.8

Q ss_pred             cccccEEEccCCcc-cccCchh-hhccccCcEEeCCCcccccc--cChhhhccCCCCEEeccCCcCcccC-----chhhh
Q 046668          187 LKLMRLIDLSKNKF-SGEIPSE-IMNLRALVSLDLSCNSFTGR--IPNSIGALESILSIDFSANQLYGEI-----PQSIS  257 (381)
Q Consensus       187 ~~~L~~L~L~~n~~-~~~~~~~-~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~  257 (381)
                      ..+|+.|.++.++. +..--.. -.+++.|+.+++..+.....  +-..-.+.+.|+.+.++++.+....     ...-.
T Consensus       319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c  398 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC  398 (483)
T ss_pred             CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence            45677777776642 2111111 23456666666666543211  1122234566777777766532111     11223


Q ss_pred             CCCCCCeeeCCCCcce
Q 046668          258 SLTFLSRLKLSNNNLS  273 (381)
Q Consensus       258 ~l~~L~~L~l~~N~l~  273 (381)
                      .+..|+.+.+++++..
T Consensus       399 ~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  399 SLEGLEVLELDNCPLI  414 (483)
T ss_pred             cccccceeeecCCCCc
Confidence            4456666666666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.87  E-value=0.0044  Score=31.17  Aligned_cols=12  Identities=42%  Similarity=0.636  Sum_probs=4.8

Q ss_pred             CCEEEccCCccc
Q 046668           50 LQSLNLRKNSLS   61 (381)
Q Consensus        50 L~~L~L~~n~l~   61 (381)
                      |++|++++|.++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.60  E-value=0.00093  Score=64.03  Aligned_cols=110  Identities=18%  Similarity=0.136  Sum_probs=47.6

Q ss_pred             CCCCCEEEccCCcccee--CCccccCCCCCCEEeCcCC-cCcccCC---hhHHhcCCCCcEEEccccc-ccccCCcCc-c
Q 046668           47 LSSLQSLNLRKNSLSGQ--IPASFQNCTKLVMLDIGEN-EFVGNVP---TWIGIRFSSLMILNLRSNK-FRGVLPNQL-C  118 (381)
Q Consensus        47 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~  118 (381)
                      ++.|+.|.+.++.-...  .-.....+++|+.|+++++ ......+   ..+...+.+|+.|+++.+. ++...-..+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566665555422211  1233445566666666552 1110111   1122245556666666555 332211111 1


Q ss_pred             CCCCCCEEeccCCc-CCCCc-CcccccccccccccccCCc
Q 046668          119 GLTSLHVLDLADNH-LSGSI-PKCISNISSMVTANFSIGT  156 (381)
Q Consensus       119 ~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~l~~~~~~  156 (381)
                      .+++|++|.+.++. ++... -.....++.|+.++++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            25566666655554 33211 1222345556666555444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.03  E-value=9.4e-05  Score=69.81  Aligned_cols=184  Identities=24%  Similarity=0.272  Sum_probs=100.9

Q ss_pred             CCEEECcCCcCccc----CCccCCCCCCCCEEEccCCccceeCC----ccccCC-CCCCEEeCcCCcCccc----CChhH
Q 046668           26 LLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSLSGQIP----ASFQNC-TKLVMLDIGENEFVGN----VPTWI   92 (381)
Q Consensus        26 L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~----~~~~~   92 (381)
                      +..|+|.+|.+...    +..++....+|+.|++++|.+.+.--    ..+... ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            77778888877533    33445667788888888887762211    122222 4567777777777532    33344


Q ss_pred             HhcCCCCcEEEcccccccc----cCCc----CccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCC
Q 046668           93 GIRFSSLMILNLRSNKFRG----VLPN----QLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVS  164 (381)
Q Consensus        93 ~~~l~~L~~L~L~~n~l~~----~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~  164 (381)
                      . ....++.++++.|.+..    .++.    .+....++++|.+++|.++..   ...   .+                 
T Consensus       169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~---~c~---~l-----------------  224 (478)
T KOG4308|consen  169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS---SCA---LL-----------------  224 (478)
T ss_pred             h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH---HHH---HH-----------------
Confidence            4 25677777887777641    1112    223456677777777776511   000   00                 


Q ss_pred             CCccccceEEEEeccccchhhhccc-ccEEEccCCccccc----Cchhhhcc-ccCcEEeCCCcccccccCh----hhhc
Q 046668          165 TGKYVEDALLVLKGKAVEYNTILKL-MRLIDLSKNKFSGE----IPSEIMNL-RALVSLDLSCNSFTGRIPN----SIGA  234 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~~~----~~~~  234 (381)
                                      ...+...+. +..|++..|.+.+.    ....+..+ ..+++++++.|.+......    .+..
T Consensus       225 ----------------~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~  288 (478)
T KOG4308|consen  225 ----------------DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS  288 (478)
T ss_pred             ----------------HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhh
Confidence                            000011112 34466666666533    12233344 5667777777777654332    3344


Q ss_pred             cCCCCEEeccCCcCc
Q 046668          235 LESILSIDFSANQLY  249 (381)
Q Consensus       235 l~~L~~L~L~~n~l~  249 (381)
                      .++++.+.++.|.+.
T Consensus       289 ~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  289 CRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHhhcccCccc
Confidence            557777777777765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.05  E-value=0.033  Score=25.91  Aligned_cols=11  Identities=36%  Similarity=0.619  Sum_probs=3.5

Q ss_pred             CCEEeCcCCcC
Q 046668           74 LVMLDIGENEF   84 (381)
Q Consensus        74 L~~L~L~~n~l   84 (381)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.91  E-value=0.063  Score=28.08  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=13.5

Q ss_pred             CCCCCEEeCcCCcCcccCChhHH
Q 046668           71 CTKLVMLDIGENEFVGNVPTWIG   93 (381)
Q Consensus        71 l~~L~~L~L~~n~l~~~~~~~~~   93 (381)
                      +++|++|+|++|++. .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            345666666666665 5665544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.91  E-value=0.063  Score=28.08  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=13.5

Q ss_pred             CCCCCEEeCcCCcCcccCChhHH
Q 046668           71 CTKLVMLDIGENEFVGNVPTWIG   93 (381)
Q Consensus        71 l~~L~~L~L~~n~l~~~~~~~~~   93 (381)
                      +++|++|+|++|++. .+|...+
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            345666666666665 5665544

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.83  E-value=0.0029  Score=52.58  Aligned_cols=86  Identities=20%  Similarity=0.245  Sum_probs=69.9

Q ss_pred             hhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCe
Q 046668          185 TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSR  264 (381)
Q Consensus       185 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  264 (381)
                      ......+.||++.|++- ..-..|+.++.+..|+++.|.+. ..|..++....+..+++..|..+ ..|.++...+.+++
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            34566888888888775 44556778888889999999888 88888888888888888888887 67888888899999


Q ss_pred             eeCCCCcce
Q 046668          265 LKLSNNNLS  273 (381)
Q Consensus       265 L~l~~N~l~  273 (381)
                      +++-+|++.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            999888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.78  E-value=0.0017  Score=53.98  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=74.7

Q ss_pred             cCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCC
Q 046668           35 NFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP  114 (381)
Q Consensus        35 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  114 (381)
                      .++.+.-..+......+.||++.|++. .....|.-+..|..||++.|++. ..|.+.. ....++.+++.+|..+ ..|
T Consensus        29 ~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p  104 (326)
T KOG0473|consen   29 ELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQP  104 (326)
T ss_pred             HhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCC
Confidence            334333345566778888999988876 45566777888888999999887 7888777 6777888888888877 778


Q ss_pred             cCccCCCCCCEEeccCCcCC
Q 046668          115 NQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus       115 ~~~~~l~~L~~L~L~~n~l~  134 (381)
                      ..+...++++.+++..|.+.
T Consensus       105 ~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  105 KSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccccccCCcchhhhccCcch
Confidence            88999999999999888765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.69  E-value=0.094  Score=27.40  Aligned_cols=14  Identities=36%  Similarity=0.529  Sum_probs=7.2

Q ss_pred             CCCCEEECcCCcCc
Q 046668           24 LDLLVLNLGNNNFT   37 (381)
Q Consensus        24 ~~L~~L~L~~n~l~   37 (381)
                      ++|++|+|++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.69  E-value=0.094  Score=27.40  Aligned_cols=14  Identities=36%  Similarity=0.529  Sum_probs=7.2

Q ss_pred             CCCCEEECcCCcCc
Q 046668           24 LDLLVLNLGNNNFT   37 (381)
Q Consensus        24 ~~L~~L~L~~n~l~   37 (381)
                      ++|++|+|++|.++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=91.37  E-value=0.24  Score=28.80  Aligned_cols=27  Identities=15%  Similarity=-0.020  Sum_probs=13.4

Q ss_pred             eeeeehhhhhHHHHHHHHhhhhhccch
Q 046668          332 WFYVSLALGFVVGFWFVMGPLFVSRKW  358 (381)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (381)
                      .+..++++.+++.++++.+++++++|+
T Consensus        12 aIa~~VvVPV~vI~~vl~~~l~~~~rR   38 (40)
T PF08693_consen   12 AIAVGVVVPVGVIIIVLGAFLFFWYRR   38 (40)
T ss_pred             EEEEEEEechHHHHHHHHHHhheEEec
Confidence            344555555555555544544444443

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>TIGR00864 PCC polycystin cation channel protein

Probab=90.44  E-value=0.16  Score=56.88  Aligned_cols=46  Identities=22%  Similarity=0.160  Sum_probs=37.0

Q ss_pred             eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCC
Q 046668          242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDP  287 (381)
Q Consensus       242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~  287 (381)
                      ||++|+|+...+..|..+++|+.|+|++|+|.|+|.......|++.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~   46 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE   46 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence            5788999877777888899999999999999999987644444443

Note: this model has been restricted to the amino half because for technical reasons.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.85  E-value=0.032  Score=45.52  Aligned_cols=81  Identities=15%  Similarity=0.099  Sum_probs=46.7

Q ss_pred             CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeC-Ccccc-CCCCCCEEeCcCCc-CcccCChhHHhcCCCCcE
Q 046668           25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI-PASFQ-NCTKLVMLDIGENE-FVGNVPTWIGIRFSSLMI  101 (381)
Q Consensus        25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~  101 (381)
                      .++.+|=++..|..+--+.+.+++.++.|.+.+|.--+.- -+.++ -.++|+.|++++|. +++.--..+. .+++|+.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRR  180 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHH
Confidence            4566777777776555555666777777777766422100 01111 34678888888775 3322223444 5677777


Q ss_pred             EEccc
Q 046668          102 LNLRS  106 (381)
Q Consensus       102 L~L~~  106 (381)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            77654

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=89.11  E-value=0.26  Score=38.16  Aligned_cols=14  Identities=7%  Similarity=0.069  Sum_probs=7.0

Q ss_pred             ceeeeehhhhhHHH
Q 046668          331 NWFYVSLALGFVVG  344 (381)
Q Consensus       331 ~~~~~~~~~~~~~~  344 (381)
                      ..+.+++++|+.+.
T Consensus        48 knIVIGvVVGVGg~   61 (154)
T PF04478_consen   48 KNIVIGVVVGVGGP   61 (154)
T ss_pred             ccEEEEEEecccHH
Confidence            34556655554333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.37  E-value=0.12  Score=26.33  Aligned_cols=11  Identities=55%  Similarity=0.658  Sum_probs=3.5

Q ss_pred             CcEEeCCCccc
Q 046668          214 LVSLDLSCNSF  224 (381)
Q Consensus       214 L~~L~Ls~n~l  224 (381)
                      |++|+|++|.+
T Consensus         4 L~~L~l~~n~i   14 (24)
T PF13516_consen    4 LETLDLSNNQI   14 (24)
T ss_dssp             -SEEE-TSSBE
T ss_pred             CCEEEccCCcC
Confidence            33333333333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.13  E-value=0.12  Score=42.35  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=57.3

Q ss_pred             ccEEEccCCcccccCchhhhccccCcEEeCCCccccccc-Chhh-hccCCCCEEeccCCc-CcccCchhhhCCCCCCeee
Q 046668          190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRI-PNSI-GALESILSIDFSANQ-LYGEIPQSISSLTFLSRLK  266 (381)
Q Consensus       190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~  266 (381)
                      ++.++-++..+..+--+.+..++.++.|.+.++.--+.. -.-+ +-.++|+.|++++|. |++.-...+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            677888888777666677788888888888877532110 0011 134789999999885 6755566778888888888


Q ss_pred             CCCCcc
Q 046668          267 LSNNNL  272 (381)
Q Consensus       267 l~~N~l  272 (381)
                      +.+=+.
T Consensus       183 l~~l~~  188 (221)
T KOG3864|consen  183 LYDLPY  188 (221)
T ss_pred             hcCchh
Confidence            876443

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=87.14  E-value=0.6  Score=38.37  Aligned_cols=36  Identities=8%  Similarity=0.054  Sum_probs=21.8

Q ss_pred             CccceeeeehhhhhHHHHHHHHhhhhhccchhhHHH
Q 046668          328 DEVNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYY  363 (381)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (381)
                      .+..++.++++.|+++++++++++++++++++...+
T Consensus        34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k   69 (221)
T PF08374_consen   34 KDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQSPHK   69 (221)
T ss_pred             ccceeeeeeeecchhhhHHHHHHHHHHHHHhhcccc
Confidence            345677788887777776666665555434433333

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=86.87  E-value=0.46  Score=43.40  Aligned_cols=132  Identities=20%  Similarity=0.255  Sum_probs=84.4

Q ss_pred             ccEEEcCCCcc-cccCCccc-cCCCCCCEEECcCCc-CcccCCccCC-CCCCCCEEEccCCccc--eeCCccccCCCCCC
Q 046668            2 IRILKLGENHF-SGEIPDCW-MNWLDLLVLNLGNNN-FTGNIPISLG-MLSSLQSLNLRKNSLS--GQIPASFQNCTKLV   75 (381)
Q Consensus         2 L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~   75 (381)
                      ||.|+.+++.- +...-.++ .++.+|++|.++.++ ++..--..++ +.+.|+.+++..+...  +.+...-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            57777777743 32222333 468999999999986 4422222232 5789999999988543  11223335789999


Q ss_pred             EEeCcCCcCcccC----ChhHHhcCCCCcEEEccccccc-ccCCcCccCCCCCCEEeccCCcC
Q 046668           76 MLDIGENEFVGNV----PTWIGIRFSSLMILNLRSNKFR-GVLPNQLCGLTSLHVLDLADNHL  133 (381)
Q Consensus        76 ~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l  133 (381)
                      ++.++++.....-    -......+..|+.+.|+++... ...-..+..+++|+.+++.+++-
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            9999988653211    0111124678999999988754 22234566778999999988764

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=86.44  E-value=0.4  Score=27.35  Aligned_cols=20  Identities=20%  Similarity=0.449  Sum_probs=10.5

Q ss_pred             eeehhhhhHHHHHHHHhhhh
Q 046668          334 YVSLALGFVVGFWFVMGPLF  353 (381)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~  353 (381)
                      .+++++|+++++++++.+++
T Consensus         5 ~IaIIv~V~vg~~iiii~~~   24 (38)
T PF02439_consen    5 TIAIIVAVVVGMAIIIICMF   24 (38)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            34556666666555444333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=84.13  E-value=0.011  Score=56.04  Aligned_cols=156  Identities=22%  Similarity=0.175  Sum_probs=83.3

Q ss_pred             ccEEEcCCCcccccCCcc----ccCC-CCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCccce----eCCccc
Q 046668            2 IRILKLGENHFSGEIPDC----WMNW-LDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSLSG----QIPASF   68 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~   68 (381)
                      |+.|++++|.+....-..    +... ..++.|++..|.+++.    +...+.....++.++++.|.+..    .++.++
T Consensus       117 L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l  196 (478)
T KOG4308|consen  117 LGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQAL  196 (478)
T ss_pred             HhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhh
Confidence            456777777766322111    1121 3466677777766532    33445556777777777776631    122223


Q ss_pred             c----CCCCCCEEeCcCCcCcccCCh---hHHhcCCC-CcEEEccccccccc----CCcCccCC-CCCCEEeccCCcCCC
Q 046668           69 Q----NCTKLVMLDIGENEFVGNVPT---WIGIRFSS-LMILNLRSNKFRGV----LPNQLCGL-TSLHVLDLADNHLSG  135 (381)
Q Consensus        69 ~----~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~  135 (381)
                      .    ...++++|.+.+|.++...-.   ......++ +..+++.+|.+.+.    ....+..+ ..+++++++.|.++.
T Consensus       197 ~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  197 ESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             hhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            3    466777777777766421111   11112233 55577777776533    12334444 567777777777764


Q ss_pred             CcC----cccccccccccccccCCcc
Q 046668          136 SIP----KCISNISSMVTANFSIGTD  157 (381)
Q Consensus       136 ~~~----~~~~~l~~L~~l~~~~~~~  157 (381)
                      ...    ..+..++.++.+.++.+..
T Consensus       277 ~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  277 KGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             cchHHHHHHHhhhHHHHHhhcccCcc
Confidence            322    3344555666666555543

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=84.02  E-value=0.51  Score=35.46  Aligned_cols=25  Identities=8%  Similarity=0.146  Sum_probs=13.5

Q ss_pred             eeeehhhhhHHHHHHHHhhhhhccc
Q 046668          333 FYVSLALGFVVGFWFVMGPLFVSRK  357 (381)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~  357 (381)
                      ..+++++|++++++.++++++|+.+
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi~y~ir   89 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLISYCIR   89 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666555544444433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=83.24  E-value=0.54  Score=33.83  Aligned_cols=28  Identities=14%  Similarity=-0.026  Sum_probs=13.7

Q ss_pred             eeeehhhhhHHHHHHHHhhhhhccchhh
Q 046668          333 FYVSLALGFVVGFWFVMGPLFVSRKWRS  360 (381)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (381)
                      ...++++++++++.++++++++++.+|+
T Consensus        67 aiagi~vg~~~~v~~lv~~l~w~f~~r~   94 (96)
T PTZ00382         67 AIAGISVAVVAVVGGLVGFLCWWFVCRG   94 (96)
T ss_pred             cEEEEEeehhhHHHHHHHHHhheeEEee
Confidence            3445555555554444444444444443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.68  E-value=1.2  Score=23.35  Aligned_cols=14  Identities=29%  Similarity=0.411  Sum_probs=7.5

Q ss_pred             CCCCEEECcCCcCc
Q 046668           24 LDLLVLNLGNNNFT   37 (381)
Q Consensus        24 ~~L~~L~L~~n~l~   37 (381)
                      .+|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34555555555554

>PF15102 TMEM154: TMEM154 protein family

Probab=82.36  E-value=1.4  Score=34.07  Aligned_cols=14  Identities=14%  Similarity=0.140  Sum_probs=5.8

Q ss_pred             HHHhhhhhccchhh
Q 046668          347 FVMGPLFVSRKWRS  360 (381)
Q Consensus       347 ~~~~~~~~~~~~~~  360 (381)
                      ++++++.++||||.
T Consensus        74 ~vV~lv~~~kRkr~   87 (146)
T PF15102_consen   74 SVVCLVIYYKRKRT   87 (146)
T ss_pred             HHHHheeEEeeccc
Confidence            33333444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	381
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-33
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-33
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-17
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 146/325 (44%), Gaps = 29/325 (8%)
Query: 5   LKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
           L L  N+ SG IP                    G IP  L  + +L++L L  N L+G+I
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 65  PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124
           P+   NCT L  + +  N   G +P WIG R  +L IL L +N F G +P +L    SL 
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY-PSVSTGKYVEDALLVLKGKAVEY 183
            LDL  N  +G+IP  +   S  + ANF  G    Y  +    K    A  +L+ + +  
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 598
Query: 184 NTILKL--------------------------MRLIDLSKNKFSGEIPSEIMNLRALVSL 217
             + +L                          M  +D+S N  SG IP EI ++  L  L
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIP 277
           +L  N  +G IP+ +G L  +  +D S+N+L G IPQ++S+LT             G IP
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Query: 278 LSTQLQSFDPSSFTGN-RLCGSPLP 301
              Q ++F P+ F  N  LCG PLP
Sbjct: 719 EMGQFETFPPAKFLNNPGLCGYPLP 743

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 146/325 (44%), Gaps = 29/325 (8%)
Query: 5   LKLGENHFSGEIPDCWMXXXXXXXXXXXXXXFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
           L L  N+ SG IP                    G IP  L  + +L++L L  N L+G+I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 65  PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH 124
           P+   NCT L  + +  N   G +P WIG R  +L IL L +N F G +P +L    SL 
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY-PSVSTGKYVEDALLVLKGKAVEY 183
            LDL  N  +G+IP  +   S  + ANF  G    Y  +    K    A  +L+ + +  
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 184 NTILKL--------------------------MRLIDLSKNKFSGEIPSEIMNLRALVSL 217
             + +L                          M  +D+S N  SG IP EI ++  L  L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFXXXXXXXXXXXXGKIP 277
           +L  N  +G IP+ +G L  +  +D S+N+L G IPQ++S+LT             G IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 278 LSTQLQSFDPSSFTGNR-LCGSPLP 301
              Q ++F P+ F  N  LCG PLP
Sbjct: 722 EMGQFETFPPAKFLNNPGLCGYPLP 746

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 124/292 (42%), Gaps = 54/292 (18%)
Query: 44  LGMLSSLQSLNLRKNSL--SG-------QIPASFQNCTKLVMLDIGE-NEFVGNVPTWIG 93
           LG+L    +   R N+L  SG        IP+S  N   L  L IG  N  VG +P  I 
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 94  IRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFS 153
            + + L  L +      G +P+ L  + +L  LD + N LSG++P  IS++ ++V   F 
Sbjct: 99  -KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 154 IGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRA 213
                       G  +  A+         Y +  KL   + +S+N+ +G+IP    NL  
Sbjct: 158 ------------GNRISGAI------PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198
Query: 214 LVSLDLSCNSFTGRIP-----------------------NSIGALESILSIDFSANQLYG 250
           L  +DLS N   G                            +G  +++  +D   N++YG
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 251 EIPQSISSLTFXXXXXXXXXXXXGKIPLSTQLQSFDPSSFTGNR-LCGSPLP 301
            +PQ ++ L F            G+IP    LQ FD S++  N+ LCGSPLP
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 45  GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104
           G L  L  L L++N L+G  P +F+  + +  L +GEN+ +  +   + +    L  LNL
Sbjct: 51  GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNL 109
Query: 105 RSNKFRGVLPNQLCGLTSLHVLDLADN 131
             N+   V+P     L SL  L+LA N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-66
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  299 bits (768), Expect = 4e-95
 Identities = 98/331 (29%), Positives = 147/331 (44%), Gaps = 29/331 (8%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L L  N+ SG IP    +   L  L L  N   G IP  L  + +L++L L  N L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G+IP+   NCT L  + +  N   G +P WIG R  +L IL L +N F G +P +L    
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGT---DVQYPSVSTGKYVEDALLVLKG 178
           SL  LDL  N  +G+IP  +   S  + ANF  G     ++   +    +    LL  +G
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
              E    L      +++   + G       N  +++ LD+S N  +G IP  IG++  +
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658

Query: 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS------------------- 279
             ++   N + G IP  +  L  L+ L LS+N L G+IP +                   
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

Query: 280 -----TQLQSFDPSSFTGNR-LCGSPLPNNC 304
                 Q ++F P+ F  N  LCG PLP   
Sbjct: 719 PIPEMGQFETFPPAKFLNNPGLCGYPLPRCD 749

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  222 bits (567), Expect = 6e-66
 Identities = 93/310 (30%), Positives = 141/310 (45%), Gaps = 54/310 (17%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPI-SLGMLSSLQSLNLRKNSLS 61
             L L  NHF G +P  + +   L  L L +NNF+G +P+ +L  +  L+ L+L  N  S
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 62  GQIPASFQNCT-KLVMLDIGENEFVGNVPTWIG-IRFSSLMILNLRSNKFRGVLPNQLCG 119
           G++P S  N +  L+ LD+  N F G +   +     ++L  L L++N F G +P  L  
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
            + L  L L+ N+LSG+IP  + ++S                                  
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSK--------------------------------- 443

Query: 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239
                     +R + L  N   GEIP E+M ++ L +L L  N  TG IP+ +    ++ 
Sbjct: 444 ----------LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493

Query: 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGNRL 295
            I  S N+L GEIP+ I  L  L+ LKLSNN+ SG IP        L   D ++   N  
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT---NLF 550

Query: 296 CGSPLPNNCF 305
            G+ +P   F
Sbjct: 551 NGT-IPAAMF 559

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  219 bits (560), Expect = 6e-65
 Identities = 91/304 (29%), Positives = 132/304 (43%), Gaps = 54/304 (17%)

Query: 3   RILKLGENHFSGEIPDC-WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           + L L EN F+GEIPD        L  L+L  N+F G +P   G  S L+SL L  N+ S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 62  GQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG- 119
           G++P  +      L +LD+  NEF G +P  +    +SL+ L+L SN F G +   LC  
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 120 -LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG 178
              +L  L L +N  +G IP  +SN S +                               
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSEL------------------------------- 420

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
                         + LS N  SG IPS + +L  L  L L  N   G IP  +  ++++
Sbjct: 421 ------------VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGNR 294
            ++    N L GEIP  +S+ T L+ + LSNN L+G+IP        L        + N 
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK---LSNNS 525

Query: 295 LCGS 298
             G+
Sbjct: 526 FSGN 529

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  217 bits (554), Expect = 4e-64
 Identities = 91/302 (30%), Positives = 130/302 (43%), Gaps = 52/302 (17%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISL-GMLSSLQSLNLRKNSLS 61
           ++L +  N F G IP   +    L  L+L  N FTG IP  L G   +L  L+L  N   
Sbjct: 250 KLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G +P  F +C+ L  L +  N F G +P    ++   L +L+L  N+F G LP  L  L+
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 122 -SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
            SL  LDL+ N+ SG I   +                                       
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNP----------------------------------- 392

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
                    ++ + L  N F+G+IP  + N   LVSL LS N  +G IP+S+G+L  +  
Sbjct: 393 ------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGNRLC 296
           +    N L GEIPQ +  +  L  L L  N+L+G+IP      T L        + NRL 
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS---LSNNRLT 503

Query: 297 GS 298
           G 
Sbjct: 504 GE 505

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  210 bits (538), Expect = 8e-62
 Identities = 89/301 (29%), Positives = 127/301 (42%), Gaps = 51/301 (16%)

Query: 2   IRILKLGENHFSGEIPDCWM-NWLDLLVLNLGNNNFTGNIPISLGMLS-SLQSLNLRKNS 59
           +  L L  N+FSGE+P   +     L VL+L  N F+G +P SL  LS SL +L+L  N+
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 60  LSGQIPASFQNCTK--LVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL 117
            SG I  +     K  L  L +  N F G +P  +    S L+ L+L  N   G +P+ L
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSL 438

Query: 118 CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK 177
             L+ L  L L  N L G IP+ +  + ++ T                            
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLET---------------------------- 470

Query: 178 GKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237
                          + L  N  +GEIPS + N   L  + LS N  TG IP  IG LE+
Sbjct: 471 ---------------LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515

Query: 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCG 297
           +  +  S N   G IP  +     L  L L+ N  +G IP +   QS   ++   N + G
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA---NFIAG 572

Query: 298 S 298
            
Sbjct: 573 K 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  209 bits (535), Expect = 2e-61
 Identities = 98/310 (31%), Positives = 152/310 (49%), Gaps = 47/310 (15%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           + L +  N  SG++       ++L  L++ +NNF+  IP  LG  S+LQ L++  N LSG
Sbjct: 181 KHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG-LT 121
               +   CT+L +L+I  N+FVG +P        SL  L+L  NKF G +P+ L G   
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACD 294

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFS----IGTDVQYPSVSTGKYVEDALLVLK 177
           +L  LDL+ NH  G++P    + S + +   S     G                      
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE--------------------- 333

Query: 178 GKAVEYNTILKLMRL--IDLSKNKFSGEIPSEIMNLRA-LVSLDLSCNSFTGRIPNSIG- 233
              +  +T+LK+  L  +DLS N+FSGE+P  + NL A L++LDLS N+F+G I  ++  
Sbjct: 334 ---LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 234 -ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPS 288
               ++  +    N   G+IP ++S+ + L  L LS N LSG IP S    ++L+     
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK-- 448

Query: 289 SFTGNRLCGS 298
               N L G 
Sbjct: 449 -LWLNMLEGE 457

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  203 bits (520), Expect = 2e-59
 Identities = 82/302 (27%), Positives = 124/302 (41%), Gaps = 53/302 (17%)

Query: 2   IRILKLGENHFSGEIPD--CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS 59
           +  L L  N+FSG I    C      L  L L NN FTG IP +L   S L SL+L  N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
           LSG IP+S  + +KL  L +  N   G +P  +     +L  L L  N   G +P+ L  
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSN 488

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
            T+L+ + L++N L+G IPK I  + +                                 
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLEN--------------------------------- 515

Query: 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239
                     + ++ LS N FSG IP+E+ + R+L+ LDL+ N F G IP ++      +
Sbjct: 516 ----------LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565

Query: 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNN--NLSGKIPLS-TQLQSFDPSSFTGNRLC 296
           +     N + G+    I +         + N     G       +L + +P + T     
Sbjct: 566 AA----NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 297 GS 298
           G 
Sbjct: 622 GH 623

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  198 bits (506), Expect = 2e-57
 Identities = 80/307 (26%), Positives = 127/307 (41%), Gaps = 62/307 (20%)

Query: 3   RILKLGENHFSGEIPDCWM---NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS 59
            +L L  N  SG     W+      +L  L +  N  +G++ +      +L+ L++  N+
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNN 211

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
            S  IP    +C+ L  LDI  N+  G+    I    + L +LN+ SN+F G +P     
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLP-- 267

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
           L SL  L LA+N  +G IP  +S                                     
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGA----------------------------------- 292

Query: 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP-NSIGALESI 238
                     +  +DLS N F G +P    +   L SL LS N+F+G +P +++  +  +
Sbjct: 293 -------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 239 LSIDFSANQLYGEIPQSISSLTF-LSRLKLSNNNLSGKIPLS------TQLQSFDPSSFT 291
             +D S N+  GE+P+S+++L+  L  L LS+NN SG I  +        LQ        
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY---LQ 402

Query: 292 GNRLCGS 298
            N   G 
Sbjct: 403 NNGFTGK 409

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  196 bits (501), Expect = 1e-56
 Identities = 89/322 (27%), Positives = 136/322 (42%), Gaps = 58/322 (18%)

Query: 3   RILKLGENHFSGEIPDCWM--NWLDLLVLNLGNNNFTGNIPISLGM-LSSLQSLNLRKNS 59
             L L  N  SG +       +   L  LN+ +N       +S G+ L+SL+ L+L  NS
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 60  LSGQIPASFQ---NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQ 116
           +SG     +     C +L  L I  N+  G+V   +  R  +L  L++ SN F   +P  
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VS-RCVNLEFLDVSSNNFSTGIP-F 218

Query: 117 LCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVL 176
           L   ++L  LD++ N LSG   + IS  + +   N S                       
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS----------------------- 255

Query: 177 KGKAVEYN--------TILKLMRLIDLSKNKFSGEIPSEIM-NLRALVSLDLSCNSFTGR 227
                  N          LK ++ + L++NKF+GEIP  +      L  LDLS N F G 
Sbjct: 256 ------SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 228 IPNSIGALESILSIDFSANQLYGEIP-QSISSLTFLSRLKLSNNNLSGKIP-----LSTQ 281
           +P   G+   + S+  S+N   GE+P  ++  +  L  L LS N  SG++P     LS  
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 282 LQSFDPSSFTGNRLCGSPLPNN 303
           L + D    + N   G P+  N
Sbjct: 370 LLTLD---LSSNNFSG-PILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  178 bits (453), Expect = 6e-50
 Identities = 70/308 (22%), Positives = 115/308 (37%), Gaps = 62/308 (20%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
            I +     N     +    ++   L  L L N++  G++       +SL SL+L +NSL
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSL 112

Query: 61  SGQIPA--SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLC 118
           SG +    S  +C+ L  L++  N          G++ +SL +L+L +N   G       
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 119 ---GLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLV 175
              G   L  L ++ N +SG +   +S   ++                            
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEF-------------------------- 204

Query: 176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235
                            +D+S N FS  IP  + +  AL  LD+S N  +G    +I   
Sbjct: 205 -----------------LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC 246

Query: 236 ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-----TQLQSFDPSSF 290
             +  ++ S+NQ  G IP     L  L  L L+ N  +G+IP         L   D    
Sbjct: 247 TELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD---L 301

Query: 291 TGNRLCGS 298
           +GN   G+
Sbjct: 302 SGNHFYGA 309

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (359), Expect = 3e-37
 Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 32/259 (12%)

Query: 48  SSLQSLNLRKNSLS---GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104
             + S++L    L+     + +S  + T L  L +  +   G+V        +SL  L+L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFK-CSASLTSLDL 107

Query: 105 RSNKFRGVLP--NQLCGLTSLHVLDLADNHLSGSIPK-CISNISSMVTANFSIGTDVQYP 161
             N   G +     L   + L  L+++ N L           ++S+   + S        
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS-------- 159

Query: 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC 221
           + S         ++  G           ++ + +S NK SG++   +     L  LD+S 
Sbjct: 160 ANSISGANVVGWVLSDG--------CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209

Query: 222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-- 279
           N+F+  IP  +G   ++  +D S N+L G+  ++IS+ T L  L +S+N   G IP    
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 268

Query: 280 TQLQSFDPSSFTGNRLCGS 298
             LQ         N+  G 
Sbjct: 269 KSLQYLS---LAENKFTGE 284

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 4e-24
 Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 39/223 (17%)

Query: 90  TWIGI-----RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
           T+ G+     + +S+ + +   N     + + L  LT L  L L+++H++GS+       
Sbjct: 41  TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCS 99

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRL--IDLSKNKFSG 202
           +S+ + + S  +                   L G      ++     L  +++S N    
Sbjct: 100 ASLTSLDLSRNS-------------------LSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140

Query: 203 EIP-SEIMNLRALVSLDLSCNSFTGRIPNSI---GALESILSIDFSANQLYGEIPQSISS 258
               S  + L +L  LDLS NS +G              +  +  S N++ G++   +S 
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198

Query: 259 LTFLSRLKLSNNNLSGKIPL---STQLQSFDPSSFTGNRLCGS 298
              L  L +S+NN S  IP     + LQ  D    +GN+L G 
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLD---ISGNKLSGD 238

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 6e-16
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 193 IDLSKNKFS---GEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLY 249
           IDLS    +     + S +++L  L SL LS +   G +        S+ S+D S N L 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLS 113

Query: 250 GEIP--QSISSLTFLSRLKLSNNNLSGKIPLS-----TQLQSFDPSS--FTGNRLCGSPL 300
           G +    S+ S + L  L +S+N L     +S       L+  D S+   +G  + G  L
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 301 PNNC 304
            + C
Sbjct: 174 SDGC 177

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
            + IL LG N  SG IPD   +   L +L+L +N   G IP ++  L+ L  ++L  N+L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 61  SGQIPAS--FQN 70
           SG IP    F+ 
Sbjct: 717 SGPIPEMGQFET 728

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  237 bits (607), Expect = 3e-76
 Identities = 78/306 (25%), Positives = 126/306 (41%), Gaps = 51/306 (16%)

Query: 2   IRILKLGENHFSGE--IPDCWMNWLDLLVLNLGN-NNFTGNIPISLGMLSSLQSLNLRKN 58
           +  L L   +      IP    N   L  L +G  NN  G IP ++  L+ L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 59  SLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLC 118
           ++SG IP        LV LD   N   G +P  I     +L+ +    N+  G +P+   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYG 170

Query: 119 GLTSLH-VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK 177
             + L   + ++ N L+G IP   +N++                                
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-------------------------------- 198

Query: 178 GKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237
                       +  +DLS+N   G+      + +    + L+ NS    +   +G  ++
Sbjct: 199 ------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKN 245

Query: 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LC 296
           +  +D   N++YG +PQ ++ L FL  L +S NNL G+IP    LQ FD S++  N+ LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

Query: 297 GSPLPN 302
           GSPLP 
Sbjct: 306 GSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  176 bits (448), Expect = 1e-52
 Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 55/277 (19%)

Query: 29  LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ--IPASFQNCTKLVMLDI-GENEFV 85
            +  N  + G +  +      + +L+L   +L     IP+S  N   L  L I G N  V
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
           G +P  I  + + L  L +      G +P+ L  + +L  LD + N LSG++P  IS++ 
Sbjct: 91  GPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205
           ++V                                            I    N+ SG IP
Sbjct: 150 NLVG-------------------------------------------ITFDGNRISGAIP 166

Query: 206 SEIMNLRALV-SLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSR 264
               +   L  S+ +S N  TG+IP +   L ++  +D S N L G+      S     +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 265 LKLSNNNLSGKIP---LSTQLQSFDPSSFTGNRLCGS 298
           + L+ N+L+  +    LS  L   D  +   NR+ G+
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRN---NRIYGT 259

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (265), Expect = 4e-26
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 6/141 (4%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
              + +  N  +G+IP  + N L+L  ++L  N   G+  +  G   + Q ++L KNSL+
Sbjct: 176 FTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
             +         L  LD+  N   G +P  +  +   L  LN+  N   G +P     L 
Sbjct: 235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQGG-NLQ 291

Query: 122 SLHVLDLADN-HLSGS-IPKC 140
              V   A+N  L GS +P C
Sbjct: 292 RFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 14/107 (13%)

Query: 203 EIPSEIMNLRALVS----LDLSCNSFTGRIPNSIGALESILSIDFSANQLYGE--IPQSI 256
           +I  ++ N   L S     D    ++ G + ++      + ++D S   L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 257 SSLTFLSRLKLSN-NNLSGKIPLS----TQLQSFDPSSFTGNRLCGS 298
           ++L +L+ L +   NNL G IP +    TQL        T   + G+
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY---ITHTNVSGA 116

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS 59
            +  L L  N   G +P        L  LN+  NN  G IP   G L          N 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (392), Expect = 5e-42
 Identities = 57/322 (17%), Positives = 112/322 (34%), Gaps = 39/322 (12%)

Query: 2   IRILKLGENHF-SGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
           I+I+ +G N+  +  +         L +L    N   G +P + G    L SLNL  N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR-FSSLMILNLRSNKFRGV------- 112
           +           ++  L    N+    +P     +  S +  ++   N+   V       
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 113 LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDA 172
           L        ++  ++L++N +S    +  S  S + + N           +      ++ 
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM---GNMLTEIPKNSLKDEN 481

Query: 173 LLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM--NLRALVSLDLSCNSFTGRIPN 230
                           L+  IDL  NK +  +  +     L  LV +DLS NSF+   P 
Sbjct: 482 ENFKN---------TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

Query: 231 SIGALESILSI------DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP--LSTQL 282
                 ++         D   N+   E P+ I+    L++L++ +N++   +   ++  +
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITPNI 589

Query: 283 QSFDPSSFTGNRLCGSPLPNNC 304
              D      N      L   C
Sbjct: 590 SVLD---IKDNPNISIDLSYVC 608

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  141 bits (358), Expect = 2e-37
 Identities = 40/288 (13%), Positives = 74/288 (25%), Gaps = 60/288 (20%)

Query: 3   RILKLGENHFSGEIPD--CWMNWLDLLVLNLGNNNFTG-------NIPISLGMLSSLQSL 53
             L    N     IP+     +   +  ++   N            +  +     ++ S+
Sbjct: 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 54  NLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG-------NVPTWIGIRFSSLMILNLRS 106
           NL  N +S      F   + L  +++  N           +           L  ++LR 
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-NTYLLTSIDLRF 497

Query: 107 NKFRGVLPN-QLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST 165
           NK   +  + +   L  L  +DL+ N  S   P    N S++                  
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL------------------ 538

Query: 166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT 225
                                  +    D   N+   E P  I    +L  L +  N   
Sbjct: 539 -------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 226 GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
             +   I    +I  +D   N         +          L  +   
Sbjct: 580 K-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  141 bits (357), Expect = 3e-37
 Identities = 64/329 (19%), Positives = 112/329 (34%), Gaps = 54/329 (16%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT--------GNIPISLGMLSSLQSL 53
           +  +++       ++P       ++ ++N+  N                   +   +Q +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 54  NLRKNSL-SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV 112
            +  N+L +  +  S Q   KL ML+   N+  G +P   G     L  LNL  N+   +
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FG-SEIKLASLNLAYNQITEI 368

Query: 113 LPNQLCGLTSLHVLDLADNHLSGSIPK--CISNISSMVTANFS---IGTDVQYPSVSTGK 167
             N       +  L  A N L   IP      ++S M   +FS   IG+           
Sbjct: 369 PANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS----------- 416

Query: 168 YVEDALLVLKGKAVEYNTILKLMRL--IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT 225
                 +  K       T  K + +  I+LS N+ S            L S++L  N  T
Sbjct: 417 ------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 226 G-------RIPNSIGALESILSIDFSANQLYGEIPQSI--SSLTFLSRLKLSNNNLSGKI 276
                       +      + SID   N+L  ++      ++L +L  + LS N+ S   
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLSYNSFSK-F 528

Query: 277 PLS----TQLQSFDPSS---FTGNRLCGS 298
           P      + L+ F   +     GNR    
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (354), Expect = 8e-37
 Identities = 38/285 (13%), Positives = 96/285 (33%), Gaps = 23/285 (8%)

Query: 3   RILKLGENHFSGEIPD--CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
              +    H+     D     ++ DL+   + ++    +I  S  +      +    N++
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
           +  +  +    TKL    +G + FV            +    N    +       +   L
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNL 248

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
             L  +++ +      +P  +  +  M           Q  +V+  + +    L    +A
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEM-----------QLINVACNRGISGEQLKDDWQA 297

Query: 181 VEYNTILKLMRLIDLSKNKF-SGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239
           +    + + +++I +  N   +  + + +  ++ L  L+   N   G    + G+   + 
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLA 356

Query: 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQS 284
           S++ + NQ+             +  L  ++N L   IP     +S
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (353), Expect = 1e-36
 Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 65/300 (21%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           R   +G + F  E              N           +    L  L  + +       
Sbjct: 209 RQFYMGNSPFVAENIC-----EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 63  QIPASFQNCTKLVMLDIGENEFV--------GNVPTWIGIRFSSLMILNLRSNKFRGV-L 113
           ++P   +   ++ ++++  N  +                +    + I+ +  N  +   +
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV-GEKIQIIYIGYNNLKTFPV 322

Query: 114 PNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDAL 173
              L  +  L +L+   N L G +P    +   + + N +                    
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA-------------------- 361

Query: 174 LVLKGKAVEYNTI----------LKLMRLIDLSKNKFSGEIPS--EIMNLRALVSLDLSC 221
                    YN I           + +  +  + NK    IP+  +  ++  + ++D S 
Sbjct: 362 ---------YNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411

Query: 222 NSFTG-------RIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274
           N            +  +     ++ SI+ S NQ+     +  S+ + LS + L  N L+ 
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  135 bits (341), Expect = 5e-35
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 41/290 (14%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKN 58
             L L     SG +PD      +L VL LG++    N     P  +    S +     + 
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 59  SLSGQIPAS--FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQ 116
                       ++ + L+   I  +    ++     I       +   SN     +   
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT-LKDTQIGQLSNNITF-VSKA 201

Query: 117 LCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVL 176
           +  LT L    + ++              +   A      D                   
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED------------------- 242

Query: 177 KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT--------GRI 228
               ++++ +  L  + ++       ++P+ +  L  +  ++++CN            + 
Sbjct: 243 ----LKWDNLKDLTDV-EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 229 PNSIGALESILSIDFSANQL-YGEIPQSISSLTFLSRLKLSNNNLSGKIP 277
                  E I  I    N L    +  S+  +  L  L+   N L GK+P
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  132 bits (335), Expect = 3e-34
 Identities = 40/321 (12%), Positives = 95/321 (29%), Gaps = 79/321 (24%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ- 63
             +  +     I       L    +   +NN T  +  ++  L+ L+   +  +    + 
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 64  ------------------IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLR 105
                                 + N   L  +++     +  +PT++      + ++N+ 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVA 281

Query: 106 SNKFRGV--------LPNQLCGLTSLHVLDLADNHL-SGSIPKCISNISSMVTANFSIGT 156
            N+                      + ++ +  N+L +  +   +  +  +         
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM------- 334

Query: 157 DVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVS 216
                                               ++   N+  G++P    +   L S
Sbjct: 335 ------------------------------------LECLYNQLEGKLP-AFGSEIKLAS 357

Query: 217 LDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQ--SISSLTFLSRLKLSNNNLSG 274
           L+L+ N  T    N  G  E + ++ F+ N+L   IP      S++ +S +  S N +  
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGS 416

Query: 275 KIPLSTQLQSFDPSSFTGNRL 295
                      DP+ F G  +
Sbjct: 417 VDG--KNFDPLDPTPFKGINV 435

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (316), Expect = 9e-32
 Identities = 33/292 (11%), Positives = 83/292 (28%), Gaps = 46/292 (15%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLVMLDIGE 81
           +  L+L     +G +P ++G L+ L+ L L  +          P                
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 82  NEFVGNVPTWIG-IRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC 140
             +      +     FS L+   + S+  +  +            +    N+++  + K 
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA 201

Query: 141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKF 200
           +  ++ +                            +         I +     +    + 
Sbjct: 202 VMRLTKLRQ------------------------FYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 201 SGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQL--------YGEI 252
                 +  NL+ L  +++       ++P  + AL  +  I+ + N+           + 
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 253 PQSISSLTFLSRLKLSNNNL-SGKIPLS----TQLQSFDPSSFTGNRLCGSP 299
                    +  + +  NNL +  +  S     +L   +      N+L G  
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE---CLYNQLEGKL 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  115 bits (289), Expect = 4e-28
 Identities = 37/283 (13%), Positives = 72/283 (25%), Gaps = 61/283 (21%)

Query: 30  NLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVP 89
           N   + +     +SL     +  L+L     SG++P +    T+L +L +G +    N  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 90  TWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS-----GSIPKCISNI 144
            +     S+ M    +           +         DL  + ++      SI K     
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204
                                                           I    N  +  +
Sbjct: 183 LKDTQ-------------------------------------------IGQLSNNITF-V 198

Query: 205 PSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSR 264
              +M L  L    +  + F           E+         Q Y        +L  L+ 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENEN-----SEYAQQYKTEDLKWDNLKDLTD 253

Query: 265 LKLSNNNLSGKIPLS----TQLQSFDPSSFTGNRLCGSPLPNN 303
           +++ N     K+P       ++Q  +      NR        +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLIN---VACNRGISGEQLKD 293

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (285), Expect = 1e-27
 Identities = 37/280 (13%), Positives = 71/280 (25%), Gaps = 72/280 (25%)

Query: 3   RILKLGENHFSG-------EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNL 55
             +    N            +       +++  +NL NN  +          S L S+NL
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 56  RKNSLSG-------QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNK 108
             N L+            +F+N   L  +D+  N+       +       L+ ++L  N 
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 109 FRGVLPNQLCGLTSL------HVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPS 162
           F    P Q    ++L      +  D   N      P+ I+   S                
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS---------------- 567

Query: 163 VSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCN 222
                                      +  + +  N     +  +I     +  LD+  N
Sbjct: 568 ---------------------------LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDN 597

Query: 223 SFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFL 262
                  + +             ++      Q I     L
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDK-----TQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 36/147 (24%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGN------NNFTGNIPISLGMLSSLQSLNL 55
           +  + L  N FS   P   +N   L    + N      N      P  + +  SL  L +
Sbjct: 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 56  RKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPN 115
             N +   +                                 ++ +L+++ N    +  +
Sbjct: 574 GSNDIRK-VNEKI---------------------------TPNISVLDIKDNPNISIDLS 605

Query: 116 QLCGLTSLHVLDLADNHLSGSIPKCIS 142
            +C      +  L  +     I  C +
Sbjct: 606 YVCPYIEAGMYMLFYDKTQ-DIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 16/146 (10%), Positives = 42/146 (28%), Gaps = 9/146 (6%)

Query: 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC 221
           +++    V   L        +Y  + ++   ++       G       N     + +   
Sbjct: 11  ALTDDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW----NFNKEL 66

Query: 222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-- 279
           + +  +   S+ +   +  +        G +P +I  LT L  L L ++       L   
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 280 ---TQLQSFDPSSFTGNRLCGSPLPN 302
              +   S +           + +  
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDY 152

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  152 bits (386), Expect = 5e-41
 Identities = 48/312 (15%), Positives = 105/312 (33%), Gaps = 26/312 (8%)

Query: 2   IRILKLGENHFSGEIPDCW----MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRK 57
           ++ L L  +  S           +    L +LNL  N  +     +   L  L+ L+L  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 58  NSLSGQIPAS-FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV--LP 114
           N +  ++    ++    +  + +  N+++            SL  L LR    + V   P
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSP 473

Query: 115 NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALL 174
           +    L +L +LDL++N+++      +  +  +   +           +         + 
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ---HNNLARLWKHANPGGPIY 530

Query: 175 VLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA 234
            LKG        L  + +++L  N F         +L  L  +DL  N+      +    
Sbjct: 531 FLKG--------LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 235 LESILSIDFSANQLYGEIPQSIS-SLTFLSRLKLSNNNLSGKIPLSTQLQSF------DP 287
             S+ S++   N +     +    +   L+ L +  N             ++      + 
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642

Query: 288 SSFTGNRLCGSP 299
              + + LC +P
Sbjct: 643 PELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  142 bits (360), Expect = 1e-37
 Identities = 61/298 (20%), Positives = 102/298 (34%), Gaps = 28/298 (9%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L +G N  S   P+       L VLNL +N  +     +    ++L  L+L  NS+ 
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPN--QLCG 119
                 F     L+ LD+  N            +  +L  L L +NK + +      +  
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFA 169

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFS---IGTDVQYPSVSTGKYVEDALLVL 176
            +SL  L+L+ N +    P C   I  +     +   +G  +           E   L L
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL----------TEKLCLEL 219

Query: 177 KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLR--ALVSLDLSCNSFTGRIPNSIGA 234
              ++           + LS ++ S    +  + L+   L  LDLS N+      +S   
Sbjct: 220 ANTSIRN---------LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

Query: 235 LESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG 292
           L  +       N +      S+  L  +  L L  +     I L   L   D  SF  
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQW 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (351), Expect = 3e-36
 Identities = 59/323 (18%), Positives = 97/323 (30%), Gaps = 61/323 (18%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGM----LSSLQSLNLRK 57
           +  L + +N   G   + +   ++L  L+L N+  +     +        S L  LNL K
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 58  NSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL 117
           N +S     +F     L +LD+G NE    +         ++  + L  NK+  +  N  
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 118 CGLTSLHVLDLADNHLSG--SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLV 175
             + SL  L L    L    S P     + ++   + S                      
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS---------------------- 488

Query: 176 LKGKAVEYNTI----------LKLMRLIDLSKNKFS--------GEIPSEIMNLRALVSL 217
                   N I          L+ + ++DL  N  +        G     +  L  L  L
Sbjct: 489 -------NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277
           +L  N F          L  +  ID   N L        ++   L  L L  N ++    
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

Query: 278 LS-----TQLQSFDPSSFTGNRL 295
                    L   D      N  
Sbjct: 602 KVFGPAFRNLTELD---MRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  135 bits (343), Expect = 3e-35
 Identities = 53/287 (18%), Positives = 86/287 (29%), Gaps = 34/287 (11%)

Query: 2   IRILKLGENHFSGEIPD--CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS 59
           IR L L  +  S         + W +L +L+L  NN       S   L  L+   L  N+
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
           +      S      +  L++  +                    ++       +       
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQW 327

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
           L  L  L++ DN + G      + + ++   + S                  +L  L  +
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS--------------NSFTSLRTLTNE 373

Query: 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP-NSIGALESI 238
                    L  L +L+KNK S         L  L  LDL  N     +       LE+I
Sbjct: 374 TFVSLAHSPLHIL-NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSF 285
             I  S N+       S + +  L RL L    L       +  Q  
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  134 bits (339), Expect = 9e-35
 Identities = 63/306 (20%), Positives = 110/306 (35%), Gaps = 33/306 (10%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
            +        + ++PD      ++ VLNL +N        +    S L SL++  N++S 
Sbjct: 7   EVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
             P   Q    L +L++  NE             ++L  L+L SN  + +  N      +
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182
           L  LDL+ N LS +       + ++     S                 + +  LK + ++
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLS----------------NNKIQALKSEELD 166

Query: 183 YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIG---ALESIL 239
                 L +L +LS N+     P     +  L  L L+       +   +    A  SI 
Sbjct: 167 IFANSSLKKL-ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

Query: 240 SIDFSANQLYGEIPQSISSLTF--LSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGN 293
           ++  S +QL      +   L +  L+ L LS NNL+     S     QL+ F       N
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF---LEYN 282

Query: 294 RLCGSP 299
            +    
Sbjct: 283 NIQHLF 288

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (336), Expect = 3e-34
 Identities = 61/326 (18%), Positives = 97/326 (29%), Gaps = 53/326 (16%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNN---------NFTGNIPISLGMLSSLQSL 53
               L  N+             ++  LNL  +         +       S   L  L+ L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 54  NLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVP---TWIGIRFSSLMILNLRSNKFR 110
           N+  N + G     F     L  L +  +          T++ +  S L ILNL  NK  
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 111 GVLPNQLCGLTSLHVLDLADNHLSGSIP-KCISNISSMVTANFSIGTDVQYPSVSTGKYV 169
            +  +    L  L VLDL  N +   +  +    + ++     S                
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS-YNKYLQ--------- 444

Query: 170 EDALLVLKGKAVEYNTILKLMRL--IDLSKNKFSG--EIPSEIMNLRALVSLDLSCNSFT 225
                      +  N+   +  L  + L +         PS    LR L  LDLS N+  
Sbjct: 445 -----------LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 226 GRIPNSIGALESILSIDFSANQL--------YGEIPQSISSLTFLSRLKLSNNNLSGKIP 277
               + +  LE +  +D   N L         G     +  L+ L  L L +N       
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 278 LS----TQLQSFDPSSFTGNRLCGSP 299
                  +L+  D      N L   P
Sbjct: 554 EVFKDLFELKIIDLGL---NNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  131 bits (332), Expect = 1e-33
 Identities = 54/314 (17%), Positives = 95/314 (30%), Gaps = 63/314 (20%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGML--SSLQSLNLRKNS 59
           +  L L  N  S       +   +L  L L NN         L +   SSL+ L L  N 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRF--SSLMILNLRSNKFRGVLPNQL 117
           +    P  F    +L  L +   +   ++   + +    +S+  L+L +++         
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 118 CGL--TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLV 175
            GL  T+L +LDL+ N+L+       + +  +                            
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-------------------------- 276

Query: 176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDL---------SCNSFTG 226
                              L  N         +  L  +  L+L         S  S   
Sbjct: 277 -----------------FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 227 RIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFD 286
               S   L+ +  ++   N + G      + L  L  L LSN+  S +   +    S  
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379

Query: 287 PSS-----FTGNRL 295
            S       T N++
Sbjct: 380 HSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 186 ILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSA 245
           +   + +++L+ N+      +       L SLD+  N+ +   P     L  +  ++   
Sbjct: 23  LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 246 NQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGNRLCGSPLP 301
           N+L     ++ +  T L+ L L +N++             L + D    + N L  + L 
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD---LSHNGLSSTKLG 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (356), Expect = 3e-37
 Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 46/278 (16%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNN--NFTGNIPISLGMLSSLQSLNLRKNSLSG 62
            +L      G      ++   L  L+L  N  +F G    S    +SL+ L+L  N +  
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
            + ++F    +L  LD   +         + +   +L+ L++     R        GL+S
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182
           L VL +A N    +    I                                         
Sbjct: 447 LEVLKMAGNSFQENFLPDIF---------------------------------------- 466

Query: 183 YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSID 242
             T L+ +  +DLS+ +     P+   +L +L  L++S N+F          L S+  +D
Sbjct: 467 --TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 243 FSANQLYGEIPQSISSL-TFLSRLKLSNNNLSGKIPLS 279
           +S N +     Q +    + L+ L L+ N+ +      
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  136 bits (344), Expect = 1e-35
 Identities = 58/315 (18%), Positives = 96/315 (30%), Gaps = 30/315 (9%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            + L L  N         + ++ +L VL+L           +   LS L +L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGL 120
                +F   + L  L   E          IG    +L  LN+  N  +   LP     L
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           T+L  LDL+ N +       +  +  M   N S+        +S            K   
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL-------DLSLNPMNFIQPGAFKE-- 199

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSE-IMNLRALVSLDLSCNSFTGRI---PNSIGALE 236
                 ++L   + L  N  S  +    I  L  L    L    F            ALE
Sbjct: 200 ------IRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 237 SILSIDFSANQL------YGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPS 288
            + ++     +L        +I    + LT +S   L +  +      S     Q  +  
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 289 SFTGNRLCGSPLPNN 303
           +    +     L + 
Sbjct: 313 NCKFGQFPTLKLKSL 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (334), Expect = 3e-34
 Identities = 51/296 (17%), Positives = 90/296 (30%), Gaps = 55/296 (18%)

Query: 3   RILKLGENH--FSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
             L L  N   F G           L  L+L  N     +  +   L  L+ L+ + ++L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 61  SGQIPAS-FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRG-VLPNQLC 118
                 S F +   L+ LDI                 SSL +L +  N F+   LP+   
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 119 GLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG 178
            L +L  LDL+   L    P   +++SS                                
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSS-------------------------------- 495

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
                      ++++++S N F          L +L  LD S N         +    S 
Sbjct: 496 -----------LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544

Query: 239 LS-IDFSANQLYGEIPQS--ISSLTFLSRLKLSNNNLSGKIPLS---TQLQSFDPS 288
           L+ ++ + N           +  +    +L +    +    P       + S + +
Sbjct: 545 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (316), Expect = 9e-32
 Identities = 48/274 (17%), Positives = 84/274 (30%), Gaps = 55/274 (20%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               L+L  N        S      LQ L+L +  +      ++Q+ + L  L +  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHL-SGSIPKCISN 143
                       SSL  L         +    +  L +L  L++A N + S  +P+  SN
Sbjct: 89  QSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
           +++                                           +  +DLS NK    
Sbjct: 148 LTN-------------------------------------------LEHLDLSSNKIQSI 164

Query: 204 IPSEIMNLRAL----VSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQ-SISS 258
             +++  L  +    +SLDLS N      P +   +  +  +    N     + +  I  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQG 223

Query: 259 LTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG 292
           L  L   +L              L+ FD S+  G
Sbjct: 224 LAGLEVHRLVLGEFRN----EGNLEKFDKSALEG 253

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (309), Expect = 8e-31
 Identities = 59/320 (18%), Positives = 96/320 (30%), Gaps = 27/320 (8%)

Query: 3   RILKLGENHFSGEIPDCWMNW----LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKN 58
             L L  N                 L  L L+L  N      P +   +  L  L LR N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNN 210

Query: 59  SLSGQIPA-SFQNCTKLVMLDIGENEFVG--NVPTWIGIRFSSLMILNLRSNK------F 109
             S  +     Q    L +  +   EF    N+  +       L  L +   +      +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 110 RGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYV 169
              + +    LT++    L    +        S                Q+P++      
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 170 EDALLVLKGKAVEYNTILKLMRLIDLSKNK--FSGEIPSEIMNLRALVSLDLSCNSFTGR 227
                  KG        L  +  +DLS+N   F G          +L  LDLS N     
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 228 IPNSIGALESILSIDFSANQLYGEIPQSI-SSLTFLSRLKLSNNNLSGKIPLS----TQL 282
           + ++   LE +  +DF  + L      S+  SL  L  L +S+ +            + L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 283 QSFDPSSFTGNRLCGSPLPN 302
           +        GN    + LP+
Sbjct: 448 EVLK---MAGNSFQENFLPD 464

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  120 bits (303), Expect = 4e-30
 Identities = 43/266 (16%), Positives = 81/266 (30%), Gaps = 48/266 (18%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPIS-LGMLSSLQSLNLRKNSL 60
           ++ L L  N     +   ++    L  L+  ++N       S    L +L  L++     
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
                  F   + L +L +  N F  N    I     +L  L+L   +   + P     L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           +SL VL+++ N+           ++S                          L VL    
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNS--------------------------LQVL---- 523

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNL-RALVSLDLSCNSFTGRIPNS--IGALES 237
                        D S N        E+ +   +L  L+L+ N F     +   +  ++ 
Sbjct: 524 -------------DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570

Query: 238 ILSIDFSANQLYGEIPQSISSLTFLS 263
              +     ++    P     +  LS
Sbjct: 571 QRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (286), Expect = 7e-28
 Identities = 46/298 (15%), Positives = 84/298 (28%), Gaps = 63/298 (21%)

Query: 10  NHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQ 69
           +++  +I D +    ++   +L +         S       Q L L             +
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLK 325

Query: 70  NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNK--FRGVLPNQLCGLTSLHVLD 127
           +  +L            N  + + +   SL  L+L  N   F+G       G TSL  LD
Sbjct: 326 SLKRLTFTSNKGG----NAFSEVDL--PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 128 LADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTIL 187
           L+ N +       +                                             L
Sbjct: 380 LSFNGVITMSSNFLG--------------------------------------------L 395

Query: 188 KLMRLIDLSKNKFSGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN 246
           + +  +D   +         + ++LR L+ LD+S              L S+  +  + N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 247 QLYGEI-PQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGNRLCGSP 299
                  P   + L  L+ L LS   L    P +    + LQ  +    + N      
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN---MSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (270), Expect = 1e-25
 Identities = 40/247 (16%), Positives = 82/247 (33%), Gaps = 48/247 (19%)

Query: 2   IRILKLGENHFSGEIP-DCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
           +  L    ++         +++  +L+ L++ + +           LSSL+ L +  NS 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 61  SGQI-PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
                P  F     L  LD+ + +     PT      SSL +LN+  N F  +       
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
           L SL VLD + NH+  S  + + +                                    
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQH------------------------------------ 540

Query: 180 AVEYNTILKLMRLIDLSKNKFSGEIPSE--IMNLRALVSLDLSCNSFTGRIPNSIGALES 237
                     +  ++L++N F+     +  +  ++    L +         P+    +  
Sbjct: 541 ------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-P 593

Query: 238 ILSIDFS 244
           +LS++ +
Sbjct: 594 VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 22/154 (14%), Positives = 40/154 (25%), Gaps = 43/154 (27%)

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
            S   LDL+ N L         +                                     
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFS------------------------------------- 50

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
                    ++++DLS+ +          +L  L +L L+ N        +   L S+  
Sbjct: 51  ------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274
           +      L       I  L  L  L +++N +  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  132 bits (333), Expect = 8e-34
 Identities = 57/326 (17%), Positives = 115/326 (35%), Gaps = 48/326 (14%)

Query: 2   IRILKLGENHFSGEIPDCWM--NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS 59
           I+I  +G N+   E P        + L +L+  +N    ++  + G    L  L L  N 
Sbjct: 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ 606

Query: 60  LSGQIPAS-FQNCTKLVMLDIGENEFVGNVPTWIGIR-FSSLMILNLRSNKFRGVLPNQL 117
           +  +IP        ++  L    N+    +P     +    +  ++   NK      N  
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 118 CGL-----TSLHVLDLADNHLSGSIPKCISNISSMVTANFS---IGTDVQYPSVSTGKYV 169
           C +      +   + L+ N +     +  +  S + T   S   + +            +
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS------------I 712

Query: 170 EDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM--NLRALVSLDLSCNSFTGR 227
            +  L  K    +      L+  IDL  NK +  +  +     L  L ++D+S N F+  
Sbjct: 713 PENSLKPKDGNYKN---TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767

Query: 228 IPNSIGALESILSI------DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP--LS 279
            P        + +       D   N++  + P  I++   L +L++ +N++  K+   L+
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT 826

Query: 280 TQLQSFDPSSFTGNRLCGSPLPNNCF 305
            QL   D      N      + + C 
Sbjct: 827 PQLYILD---IADNPNISIDVTSVCP 849

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  127 bits (321), Expect = 3e-32
 Identities = 42/299 (14%), Positives = 84/299 (28%), Gaps = 67/299 (22%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           +I+    + F+ +        +D    N        N  +S   L  L  + L       
Sbjct: 451 QIIYFANSPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 63  QIPASFQNCTKLVMLDIGENEFVG---------NVPTWIGIRFSSLMILNLRSNKFRGVL 113
           Q+P    +  +L  L+I  N  +           +          + I  +  N      
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-TGPKIQIFYMGYNNLEEFP 564

Query: 114 PNQ-LCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDA 172
            +  L  +  L +LD   N +   +         +                         
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD------------------- 603

Query: 173 LLVLKGKAVEYNTI----------LKLMRLIDLSKNKFSGEIPS--EIMNLRALVSLDLS 220
                     YN I             +  +  S NK    IP+     ++  + S+D S
Sbjct: 604 ----------YNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652

Query: 221 CNSFTGRIPNSIGALESIL------SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
            N        +I             ++  S N++     +  ++ + +S + LSNN ++
Sbjct: 653 YNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  125 bits (315), Expect = 2e-31
 Identities = 48/324 (14%), Positives = 91/324 (28%), Gaps = 72/324 (22%)

Query: 3   RILKLGENHFSG---------EIPDCWMNWLDLLVLNLGNNNFTGNIPIS--LGMLSSLQ 51
           + L +  N              + D       + +  +G NN     P S  L  +  L 
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLG 576

Query: 52  SLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRG 111
            L+   N +   +  +F    KL  L +  N+    +P         +  L    NK + 
Sbjct: 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 112 VLPN-QLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVE 170
           +        +  +  +D + N +         ++      N                   
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN------------------- 674

Query: 171 DALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT----- 225
                                 + LS N+              + ++ LS N  T     
Sbjct: 675 -------------------ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 226 --GRIPNSIGALESILSIDFSANQLYGEIPQSI--SSLTFLSRLKLSNNNLSGKIPLS-- 279
                  +      + +ID   N+L   +      ++L +LS + +S N  S   P    
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773

Query: 280 --TQLQSFDPSS---FTGNRLCGS 298
             +QL++F         GNR+   
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQ 797

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (298), Expect = 3e-29
 Identities = 36/286 (12%), Positives = 79/286 (27%), Gaps = 59/286 (20%)

Query: 2   IRILKLGENHFSGEIPDCW--MNWLDLLVLNLGNNNFTG---NIPISLGM--LSSLQSLN 54
           +  L    N     IP+ +   +   +  ++   N       NI  S+      +  ++ 
Sbjct: 621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679

Query: 55  LRKNSLSGQIPASFQNCTKLVMLDIGENEF-------VGNVPTWIGIRFSSLMILNLRSN 107
           L  N +       F   + +  + +  N         +             L  ++LR N
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK-NTYLLTTIDLRFN 738

Query: 108 KFRGVLPN-QLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTG 166
           K   +  + +   L  L  +D++ N  S S P    N S +                   
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQL------------------- 778

Query: 167 KYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG 226
                                 +    D   N+   + P+ I    +L+ L +  N    
Sbjct: 779 ------------------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

Query: 227 RIPNSIGALESILSIDFSANQL-YGEIPQSISSLTFLSRLKLSNNN 271
            +   +     +  +D + N     ++      +     + L +  
Sbjct: 821 -VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (291), Expect = 2e-28
 Identities = 50/323 (15%), Positives = 101/323 (31%), Gaps = 51/323 (15%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L L      G +PD      +L VL+ G ++ T +  +      +      RK+ + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 62  GQIPASF-QNCTKLVMLDIGENEF-----VGNVPTWIGIRFSSLMILNLRSNKFRGVLPN 115
                 F     +L + D+ ++       +  +     I      I NL +N+    +  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRITF-ISK 442

Query: 116 QLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLV 175
            +  LT L ++  A++  +          ++   A                +  E +   
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY-------------ENEELSWSN 489

Query: 176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG--------- 226
           LK           L  + +L       ++P  + +L  L SL+++CN             
Sbjct: 490 LK----------DLTDV-ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 227 RIPNSIGALESILSIDFSANQLYGEIPQS--ISSLTFLSRLKLSNNNLSGKIPLS--TQL 282
           R+ +       I       N L  E P S  +  +  L  L   +N +          +L
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKL 597

Query: 283 QSFDPSSFTGNRLCGSPLPNNCF 305
                     N++    +P +  
Sbjct: 598 TDLK---LDYNQI--EEIPEDFC 615

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (277), Expect = 1e-26
 Identities = 38/282 (13%), Positives = 82/282 (29%), Gaps = 55/282 (19%)

Query: 21  MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG 80
           +N  DLL   +  N     I     +      +    N ++  I  + Q  TKL ++   
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFA 456

Query: 81  ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC 140
            + F  +               N    K           L  L  ++L +      +P  
Sbjct: 457 NSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKF 200
           + ++  + + N +                              N  +   +L        
Sbjct: 511 LYDLPELQSLNIA-----------------------------CNRGISAAQLKADWTR-- 539

Query: 201 SGEIPSEIMNLRALVSLDLSCNSFTGRIPNS--IGALESILSIDFSANQLYGEIPQSISS 258
              +  +      +    +  N+     P S  +  +  +  +D   N++     ++  +
Sbjct: 540 ---LADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGT 593

Query: 259 LTFLSRLKLSNNNLSGKIP-----LSTQLQSFDPSSFTGNRL 295
              L+ LKL  N +   IP      + Q++      F+ N+L
Sbjct: 594 NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLG---FSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  106 bits (266), Expect = 4e-25
 Identities = 41/316 (12%), Positives = 87/316 (27%), Gaps = 60/316 (18%)

Query: 3   RILKLGENHFSGEIPDCW---MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS 59
             L      +     +     +NW      N   + +     + L     +  L+L    
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWN----FNKELDMWGDQPGVDLDNNGRVTGLSLAGFG 334

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
             G++P +    T+L +L  G +    +   +     +  M    +           L  
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
              L++ DL  + ++                                          + K
Sbjct: 395 DQRLNLSDLLQDAINR---------------------------------------NPEMK 415

Query: 180 AVEYNTILKLMRL-IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
            ++ ++ + L    I    N+ +  I   I  L  L  +  + + FT             
Sbjct: 416 PIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI-----AVDW 469

Query: 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGNR 294
              +    + Y     S S+L  L+ ++L N     ++P       +LQS +      NR
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN---IACNR 526

Query: 295 LCGSPLPNNCFVAAPA 310
              +      +     
Sbjct: 527 GISAAQLKADWTRLAD 542

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.4 bits (245), Expect = 2e-22
 Identities = 30/278 (10%), Positives = 67/278 (24%), Gaps = 70/278 (25%)

Query: 3   RILKLGENHFSGEIPDC-----WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRK 57
             +    N    E  +          ++   + L  N             S + ++ L  
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 58  NSLS-------GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFR 110
           N ++            +++N   L  +D+  N+       +       L  +++  N F 
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 111 GVLPNQLCGLTSLHVLDL------ADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVS 164
              P Q    + L    +        N +    P  I+   S++                
Sbjct: 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ--------------- 810

Query: 165 TGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSF 224
                                       + +  N    ++  ++     L  LD++ N  
Sbjct: 811 ----------------------------LQIGSNDIR-KVDEKL--TPQLYILDIADNPN 839

Query: 225 TGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFL 262
                 S+             ++      Q I     L
Sbjct: 840 ISIDVTSVCPYIEAGMYVLLYDKT-----QDIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 13/142 (9%), Positives = 39/142 (27%), Gaps = 1/142 (0%)

Query: 162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC 221
            ++    V   L        +Y  +  +   +D    ++     +  ++     + +   
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW-NFNKEL 308

Query: 222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQ 281
           + +  +    +     +  +  +     G +P +I  LT L  L    ++ +    L   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 282 LQSFDPSSFTGNRLCGSPLPNN 303
            +     S              
Sbjct: 369 EELTPDMSEERKHRIRMHYKKM 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (330), Expect = 1e-33
 Identities = 53/284 (18%), Positives = 96/284 (33%), Gaps = 30/284 (10%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  + L +++F     + +  +  L  L+L   + +  +P  L  LS+L+ L L  N   
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE 314

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFR--GVLPNQLCG 119
                S  N   L  L I  N     + T       +L  L+L  +          QL  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFS---IGTDVQYPSVSTGKYVEDALLVL 176
           L+ L  L+L+ N       +       +   + +   +       S              
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL-KVKDAQSPFQN---------- 423

Query: 177 KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRI---PNSIG 233
                     L L+++++LS +            L AL  L+L  N F        NS+ 
Sbjct: 424 ----------LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277
            L  +  +  S   L      + +SL  ++ + LS+N L+    
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  127 bits (322), Expect = 1e-32
 Identities = 51/321 (15%), Positives = 103/321 (32%), Gaps = 24/321 (7%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L L          D + +   L  L L  N        +L    +L+ L   +  +S
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
                   N   L  L +G N    ++    G     L +L+ ++N    +    +  L 
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 122 SLHV--LDLADNHLSGSIPKCISNISSMVTANFS----------IGTDVQYPSVSTGKYV 169
                 L+L  N ++  I     + +   + NF              +    S+  G + 
Sbjct: 178 QATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 170 EDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP 229
           +     +     E    + +  + +L K+ F     +       L  LDL+    +  +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESI-NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294

Query: 230 NSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-----TQLQS 284
           + +  L ++  +  SAN+       S S+   L+ L +  N    ++          L+ 
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 285 FDPSSFTGNRLCGSPLPNNCF 305
            D    + + +  S   N   
Sbjct: 355 LD---LSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (316), Expect = 9e-32
 Identities = 50/275 (18%), Positives = 93/275 (33%), Gaps = 44/275 (16%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLL-VLNLGNNNFT--GNIPISLGMLSSLQSLNLRKNS 59
             L +  N    E+    +  L+ L  L+L +++        + L  LS LQSLNL  N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
                  +F+ C +L +LD+                   L +LNL  +           G
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
           L +L  L+L  NH      +  +++ +                                 
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQT--------------------------------- 474

Query: 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239
                  L  + ++ LS    S        +L+ +  +DLS N  T     ++  L+  +
Sbjct: 475 -------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-I 526

Query: 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274
            ++ ++N +   +P  +  L+    + L  N L  
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (300), Expect = 1e-29
 Identities = 63/305 (20%), Positives = 112/305 (36%), Gaps = 36/305 (11%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           ++ L L   H S E+P   +    L  L L  N F     IS     SL  L+++ N+  
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 62  GQI-PASFQNCTKLVMLDIGEN--EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLC 118
            ++     +N   L  LD+  +  E        +    S L  LNL  N+   +      
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 119 GLTSLHVLDLADNHLSGSIPK-CISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK 177
               L +LDLA   L     +    N+  +   N S  + +   S               
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS-HSLLDISSEQL----------FD 446

Query: 178 GKAVEYNTILKLMRLIDLSKNKFSGEI---PSEIMNLRALVSLDLSCNSFTGRIPNSIGA 234
           G        L  ++ ++L  N F        + +  L  L  L LS    +    ++  +
Sbjct: 447 G--------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 235 LESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSF 290
           L+ +  +D S N+L     +++S L  +  L L++N++S  +P      +Q ++ +    
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN---L 554

Query: 291 TGNRL 295
             N L
Sbjct: 555 RQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (282), Expect = 3e-27
 Identities = 56/283 (19%), Positives = 94/283 (33%), Gaps = 34/283 (12%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGM--LSSLQSLNLRKNSLSG 62
           L L  N  +  I     +      LN G       I   L    + SL            
Sbjct: 184 LNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 63  QIPASFQNCTK--LVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
             PA F+   +  +  +++ ++ F           FS L  L+L +      LP+ L GL
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQELDLTATHLSE-LPSGLVGL 300

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFS---IGTDVQYPSVSTGKYVEDALLVLK 177
           ++L  L L+ N          SN  S+   +        ++    +              
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN------------ 348

Query: 178 GKAVEYNTILKLMRLIDLSKNK--FSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235
                    L+ +R +DLS +    S     ++ NL  L SL+LS N        +    
Sbjct: 349 ---------LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 236 ESILSIDFSANQLYGEIPQSI-SSLTFLSRLKLSNNNLSGKIP 277
             +  +D +  +L  +  QS   +L  L  L LS++ L     
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (271), Expect = 6e-26
 Identities = 52/289 (17%), Positives = 95/289 (32%), Gaps = 29/289 (10%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           + L   +   S        N   L  L LG+N+ +            L+ L+ + N++  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 63  QIPASFQNCTKL--VMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL--C 118
                  +  +   + L++  N+  G  P       +    LN    +   V+   L   
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 119 GLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG 178
            + SL +    D       P     +  M   +     ++Q                   
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI----NLQKHYFFN------------- 268

Query: 179 KAVEYNTILKLMRL--IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE 236
             +  NT      L  +DL+    S E+PS ++ L  L  L LS N F      S     
Sbjct: 269 --ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 237 SILSIDFSANQLYGEI-PQSISSLTFLSRLKLSNNNLSGKIPLSTQLQS 284
           S+  +    N    E+    + +L  L  L LS++++      + QL++
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  104 bits (261), Expect = 1e-24
 Identities = 40/291 (13%), Positives = 79/291 (27%), Gaps = 60/291 (20%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               L    N        +   L +L  L+L +  +      +FQ+  +L  L +  N  
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
           +    T +     +L  L         +    L    +L  L L  NH+S          
Sbjct: 94  IFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204
                                                        ++++D   N      
Sbjct: 153 EK-------------------------------------------LKVLDFQNNAIHYLS 169

Query: 205 PSEIMNLRAL--VSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF- 261
             ++ +L+    +SL+L+ N   G I           S++F   Q    I + + + T  
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 262 -LSRLKLSNNNLSGKIPLS------TQLQSFDPSSFTGNRLCGSPLPNNCF 305
            L      + +     P          ++S +      +      + +N F
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESIN---LQKHYF--FNISSNTF 274

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 44/275 (16%), Positives = 82/275 (29%), Gaps = 51/275 (18%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPIS-LGMLSSLQSLNLRKNSL 60
           ++ L L  N       + +     L +L+L           S    L  L+ LNL  + L
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGI--RFSSLMILNLRSNKFRGVLPNQLC 118
                  F     L  L++  N F                L IL L       +  +   
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 119 GLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG 178
            L  ++ +DL+ N L+ S  + +S++                             + L  
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKG---------------------------IYL-- 528

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
                          +L+ N  S  +PS +  L    +++L  N        +   +  +
Sbjct: 529 ---------------NLASNHISIILPSLLPILSQQRTINLRQNPLDC----TCSNIYFL 569

Query: 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
                +  +L         +   L  ++LS+  LS
Sbjct: 570 EWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.2 bits (232), Expect = 8e-21
 Identities = 44/280 (15%), Positives = 71/280 (25%), Gaps = 73/280 (26%)

Query: 28  VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGN 87
             N  N      IP +L   +S + L    N L      +F     L  LD         
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLD--------- 63

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
                           L   +   +  +       L  L L  N L       +S   + 
Sbjct: 64  ----------------LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA- 106

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSE 207
                                    L  L                    +   S      
Sbjct: 107 -------------------------LKHL-----------------FFIQTGISSIDFIP 124

Query: 208 IMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKL 267
           + N + L SL L  N  +          E +  +DF  N ++    + +SSL   + L L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 268 --SNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCF 305
             + N+++G  P +     F   +F G +           
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 12/119 (10%)

Query: 191 RLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG 250
           +  +      + EIP  +    +   L+ S N        +   L ++  +D +  Q+Y 
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 251 EIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGNRLCGSPLPNNCF 305
               +  S   L  L L+ N L      +      L+      F    +    +     
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF---FIQTGISS--IDFIPL 125

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 8e-30
 Identities = 44/280 (15%), Positives = 84/280 (30%), Gaps = 58/280 (20%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             L+L       + PD       L  + +        +P ++   + L++L L +N L  
Sbjct: 84  VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR- 140

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIG--------IRFSSLMILNLRSNKFRGVLP 114
            +PAS  +  +L  L I     +  +P  +             +L  L L     R  LP
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 115 NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALL 174
             +  L +L  L + ++ LS ++   I ++  +                           
Sbjct: 200 ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE------------------------- 233

Query: 175 VLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLS-CNSFTGRIPNSIG 233
                             +DL         P        L  L L  C++    +P  I 
Sbjct: 234 ------------------LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIH 274

Query: 234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
            L  +  +D         +P  I+ L     + +  +  +
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (277), Expect = 1e-27
 Identities = 47/269 (17%), Positives = 84/269 (31%), Gaps = 46/269 (17%)

Query: 24  LDLLVLNLGNNNFTGNIPISLGMLSS--LQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81
            +   +              L   +     +L LR   L  Q P      + L  + I  
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113

Query: 82  NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI 141
              +  +P  +  +F+ L  L L  N  R  LP  +  L  L  L +        +P+ +
Sbjct: 114 AGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 142 SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS 201
           ++  +                                 + E+  ++ L  L  L      
Sbjct: 171 ASTDA---------------------------------SGEHQGLVNLQSL-RLEWTGIR 196

Query: 202 GEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF 261
             +P+ I NL+ L SL +  +  +  +  +I  L  +  +D          P        
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 262 LSRLKLSNNNLSGKIPLS----TQLQSFD 286
           L RL L + +    +PL     TQL+  D
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 9e-21
 Identities = 35/275 (12%), Positives = 72/275 (26%), Gaps = 67/275 (24%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
              L    +         L       + +  +   + +      N     +         
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK 69

Query: 86  GNVPTWIGI-RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
                 +        + L LRS       P+Q   L+ L  + +    L   +P  +   
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204
           +                                           L  L  L++N     +
Sbjct: 127 AG------------------------------------------LETL-TLARNPLR-AL 142

Query: 205 PSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI---------DFSANQLYGEIPQS 255
           P+ I +L  L  L +        +P  + + ++                   +   +P S
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 256 ISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFD 286
           I++L  L  LK+ N+ LS  +  +     +L+  D
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.5 bits (202), Expect = 2e-17
 Identities = 42/237 (17%), Positives = 62/237 (26%), Gaps = 56/237 (23%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLG---------MLSSLQSL 53
             L L  N     +P    +   L  L++        +P  L           L +LQSL
Sbjct: 130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 54  NLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL 113
            L    +   +PAS  N   L  L I  +     +   I      L  L+LR        
Sbjct: 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH-HLPKLEELDLRGCTALRNY 245

Query: 114 PNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDAL 173
           P    G   L  L L D     ++P  I                                
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHR------------------------------ 275

Query: 174 LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPN 230
                        L  +  +DL        +PS I  L A   + +  +       +
Sbjct: 276 -------------LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 8e-16
 Identities = 23/181 (12%), Positives = 52/181 (28%), Gaps = 25/181 (13%)

Query: 97  SSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGT 156
           S    L  + +       + L      +  D    H +          S+        G 
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGR 66

Query: 157 DVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVS 216
            ++  +       +   + L                 +L       + P +   L  L  
Sbjct: 67  ALKATADLLEDATQPGRVAL-----------------ELRSVPLP-QFPDQAFRLSHLQH 108

Query: 217 LDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKI 276
           + +        +P+++     + ++  + N L   +P SI+SL  L  L +       ++
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTEL 166

Query: 277 P 277
           P
Sbjct: 167 P 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 2/121 (1%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           + LK+  +  S  +     +   L  L+L       N P   G  + L+ L L+  S   
Sbjct: 209 KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
            +P      T+L  LD+     +  +P+ I  +  +  I+ +  +    +  ++     +
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQAQLDQHRPVARPA 326

Query: 123 L 123
            
Sbjct: 327 E 327

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (281), Expect = 3e-27
 Identities = 49/273 (17%), Positives = 87/273 (31%), Gaps = 47/273 (17%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGML--SSLQSLNLRKNSL 60
           + L L  N  S  I    +    L  L+L  N  + +   S   L  +SL+ L+L  N  
Sbjct: 331 KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
              + A+F    +L  LD   +           +    L+ L++     +        GL
Sbjct: 389 II-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           TSL+ L +A N    +    +                                       
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFAN------------------------------------ 471

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
                    +  +DLSK +           L  L  L++S N+      +    L S+ +
Sbjct: 472 ------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
           +D S N++             L+   L+NN+++
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (280), Expect = 4e-27
 Identities = 55/308 (17%), Positives = 96/308 (31%), Gaps = 28/308 (9%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            + + L  N         + N+ +L  L+L           +   L  L +L L  N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGL 120
              P SF   T L  L   E +        IG +  +L  LN+  N      LP     L
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           T+L  +DL+ N++       +  +      N S+  D+    +     ++D         
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL--DMSLNPIDF---IQDQAFQG---- 203

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSE-IMNLRALVSLDLSCNSFTGRIPNSIGALE--- 236
                 +KL   + L  N  S  I    + NL  L    L    F       I       
Sbjct: 204 ------IKL-HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 237 -----SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFT 291
                +I     +    + +       L  +S + L+  ++   +    +   +   S  
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSII 315

Query: 292 GNRLCGSP 299
             +L   P
Sbjct: 316 RCQLKQFP 323

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (267), Expect = 2e-25
 Identities = 47/274 (17%), Positives = 82/274 (29%), Gaps = 55/274 (20%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               ++L  N        S    S LQ L+L +  +      ++     L  L +  N  
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG-SIPKCISN 143
               P       +SL  L     K   +    +  L +L  L++A N +    +P   SN
Sbjct: 93  QSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
           ++++V                                            +DLS N     
Sbjct: 152 LTNLVH-------------------------------------------VDLSYNYIQTI 168

Query: 204 IPSEIMNLRAL----VSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQ-SISS 258
             +++  LR      +SLD+S N     I +       +  +    N     I +  + +
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227

Query: 259 LTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG 292
           L  L   +L              L+ F+PS   G
Sbjct: 228 LAGLHVHRLILGEFKD----ERNLEIFEPSIMEG 257

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  101 bits (253), Expect = 1e-23
 Identities = 50/291 (17%), Positives = 83/291 (28%), Gaps = 56/291 (19%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  + L          +          L++          + L     L+SL L  N  S
Sbjct: 287 VSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKSLTLTMNKGS 341

Query: 62  GQIPASFQNCTKLVMLDIGENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
             I         L  LD+  N        ++  +  +SL  L+L  N    ++     GL
Sbjct: 342 --ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL 398

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
             L  LD   + L        S   S                                  
Sbjct: 399 EELQHLDFQHSTLKRVTE--FSAFLS---------------------------------- 422

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP-NSIGALESIL 239
                 L+ +  +D+S      +     + L +L +L ++ NSF      N      ++ 
Sbjct: 423 ------LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFD 286
            +D S  QL         +L  L  L +S+NNL             L + D
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.3 bits (240), Expect = 6e-22
 Identities = 36/225 (16%), Positives = 66/225 (29%), Gaps = 45/225 (20%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPIS-LGMLSSLQSLNLRKNSL 60
           +R L L  N     +   +M   +L  L+  ++        S    L  L  L++   + 
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
                  F   T L  L +  N F  N  + +    ++L  L+L   +   +       L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
             L +L+++ N+L        + + S                          L  L    
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYS--------------------------LSTL---- 526

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT 225
                        D S N+            ++L   +L+ NS  
Sbjct: 527 -------------DCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 49/285 (17%), Positives = 82/285 (28%), Gaps = 66/285 (23%)

Query: 24  LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE 83
           + +    L   N   +  +    L+++ +++L   S+            K   L I   +
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQ 318

Query: 84  FVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISN 143
                          L  L L  NK    +  +   L SL  LDL+ N LS S     S+
Sbjct: 319 LKQFPTLD----LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
           +                                             +R +DLS N     
Sbjct: 373 LG-----------------------------------------TNSLRHLDLSFNGAI-I 390

Query: 204 IPSEIMNLRALVSLDLSCNSFTGRIPNS-IGALESILSIDFSANQLYGEIPQSISSLTFL 262
           + +  M L  L  LD   ++       S   +LE +L +D S      +       LT L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 263 SRLKLSNNNLSGKIPLST---------------QLQSFDPSSFTG 292
           + LK++ N+       +                QL+      F  
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 54/321 (16%), Positives = 104/321 (32%), Gaps = 36/321 (11%)

Query: 3   RILKLGENHFSG-EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLS----SLQSLNLRK 57
           + L +  N     ++P  + N  +L+ ++L  N         L  L        SL++  
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 58  NSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRG------ 111
           N +      +FQ   KL  L +  N    N+        + L +  L   +F+       
Sbjct: 191 NPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 112 VLPNQLCGLTSLHV--LDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYV 169
             P+ + GL  + +    L   +           ++++   + +  +      V      
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

Query: 170 ED-ALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRI 228
           +  +++  + K      +  L  L  L+ NK S  I  + + L +L  LDLS N+ +   
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSL-TLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSG 366

Query: 229 PNS--IGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLST------ 280
             S       S+  +D S N     +  +   L  L  L   ++ L      S       
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 281 ---------QLQSFDPSSFTG 292
                      +      F G
Sbjct: 426 LLYLDISYTNTKIDFDGIFLG 446

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 49/214 (22%)

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           G +    +    +      + +    VP  I    SS   ++L  N  + +        +
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
            L  LDL+   +     K                                          
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHG-------------------------------------- 78

Query: 182 EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
                L  +  + L+ N      P     L +L +L              IG L ++  +
Sbjct: 79  -----LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 242 DFSANQLYG-EIPQSISSLTFLSRLKLSNNNLSG 274
           + + N ++  ++P   S+LT L  + LS N +  
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 25/113 (22%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 193 IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEI 252
           IDLS N           N   L  LDLS          +   L  + ++  + N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 253 PQSISSLTFLSRLKLSNNNLSGKIPLS----TQLQSFDPSSFTGNRLCGSPLP 301
           P S S LT L  L      L+            L+  +      N +    LP
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN---VAHNFIHSCKLP 146

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 48/330 (14%), Positives = 100/330 (30%), Gaps = 53/330 (16%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            +I K+ ++     +     +  ++  L+L  N  +      L   + L+ LNL  N L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
            +     ++ + L  LD+  N         +     S+  L+  +N    V  ++     
Sbjct: 72  -ETL-DLESLSTLRTLDLNNNYV-----QELL-VGPSIETLHAANNNISRVSCSR---GQ 120

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFS---IGTDVQYPSVSTGKYVEDALLVLKG 178
               + LA+N ++          S +   +     I   V +  ++              
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAAS------------ 167

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
                      +  ++L  N    ++  ++     L +LDLS N     +     +   +
Sbjct: 168 --------SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-----TQLQSFDPSSFTG- 292
             I    N+L   I +++     L    L  N               ++Q+    +    
Sbjct: 217 TWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 293 ----NRLCGSP----LPNNCFVAAPAPHNE 314
                  C  P        C    PAP  +
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 56/239 (23%)

Query: 47  LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS 106
            +  +   +  +SL   + +  Q+   +  LD+  N         +   F+ L +LNL S
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSS 67

Query: 107 NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTG 166
           N     L   L  L++L  LDL +N++   +                             
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV--------------------------- 97

Query: 167 KYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG 226
                                  +  +  + N  S  +       +   ++ L+ N  T 
Sbjct: 98  --------------------GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITM 134

Query: 227 RIPNSIGALESILSIDFSANQLYG-EIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQS 284
                 G    +  +D   N++      +  +S   L  L L  N +   +        
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 6/135 (4%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTG-NIPISLGMLSSLQSLNLRKNS 59
           G + + L  N  +            +  L+L  N     N         +L+ LNL+ N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
           +   +        KL  LD+  N+    +        + +  ++LR+NK   ++   L  
Sbjct: 181 IY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRF 235

Query: 120 LTSLHVLDLADNHLS 134
             +L   DL  N   
Sbjct: 236 SQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN 246
               ++  ++ +     + S   +   +  LDLS N  +      +     +  ++ S+N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 247 QLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFD 286
            LY E    + SL+ L  L L+NN +  ++ +   +++  
Sbjct: 69  VLY-ETL-DLESLSTLRTLDLNNNYVQ-ELLVGPSIETLH 105

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 23/185 (12%), Positives = 51/185 (27%), Gaps = 63/185 (34%)

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK 179
                +  + D+ L  ++     +  +                                 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWN--------------------------------- 35

Query: 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239
                    +  L DLS N  S    +++     L  L+LS N         + +L ++ 
Sbjct: 36  ---------VKEL-DLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLR 83

Query: 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLST------------QLQSFDP 287
           ++D + N +     Q +     +  L  +NNN+S ++  S             ++     
Sbjct: 84  TLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRD 137

Query: 288 SSFTG 292
                
Sbjct: 138 LDEGC 142

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263
           I     N        ++ +S    + +   +  ++  +D S N L       ++  T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 264 RLKLSNNNLSGKIPLS--TQLQSFD 286
            L LS+N L   + L   + L++ D
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLD 86

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.2 bits (247), Expect = 5e-23
 Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 39/303 (12%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           +I K+ ++     +     +  ++  L+L  N  +      L   + L+ LNL  N L  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
                 ++ + L  LD+  N     +         S+  L+  +N    V  ++  G  +
Sbjct: 73  --TLDLESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISRVSCSRGQGKKN 124

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFS---IGTDVQYPSVSTGKYVEDALLVLKGK 179
              + LA+N ++          S +   +     I   V +  ++               
Sbjct: 125 ---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-DTVNFAELAAS------------- 167

Query: 180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL 239
                     +  ++L  N    ++  ++     L +LDLS N     +     +   + 
Sbjct: 168 -------SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSP 299
            I    N+L   I +++     L    L  N            ++    +     +    
Sbjct: 218 WISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 300 LPN 302
             N
Sbjct: 277 GQN 279

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.1 bits (226), Expect = 3e-20
 Identities = 51/296 (17%), Positives = 96/296 (32%), Gaps = 50/296 (16%)

Query: 16  IPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLV 75
           I +   N     +  + +++    +        +++ L+L  N LS    A     TKL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 76  MLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135
           +L++  N              S+L  L+L +N        +L    S+  L  A+N++S 
Sbjct: 62  LLNLSSNVLY-ETLDLES--LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 136 SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTILKLMRL 192
            +               S G   +              + L       +         R+
Sbjct: 113 RVS-------------CSRGQGKKN-------------IYLANNKITMLRDLDEGCRSRV 146

Query: 193 --IDLSKNKFSG-EIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLY 249
             +DL  N+           +   L  L+L  N     +   +     + ++D S+N+L 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL- 203

Query: 250 GEIPQSISSLTFLSRLKLSNNNLS---GKIPLSTQLQSFDPSSFTGNRLCGSPLPN 302
             +     S   ++ + L NN L      +  S  L+ FD     GN      L +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD---LRGNGFHCGTLRD 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 38/298 (12%), Positives = 87/298 (29%), Gaps = 17/298 (5%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTG-NIPISLGMLSSLQSLNLRKNS 59
           G + + L  N  +            +  L+L  N     N         +L+ LNL+ N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
           +   +        KL  LD+  N+    +        + +  ++LR+NK   ++   L  
Sbjct: 181 IY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRF 235

Query: 120 LTSLHVLDLADNHLSGSIPKCI----SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLV 175
             +L   DL  N       +        + ++        T       +           
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 176 LKGKAVEYNTILKLMRLIDLSKNKFSG----EIPSEIMNLRALVSLDLSCNSFTGRIPNS 231
            +     +   L  ++  + +     G     +  E  N      +D     +   I   
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 232 IGALESILSIDFSANQLYGEIP---QSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFD 286
               ++ ++++     L  ++    ++ + L    +  +    L       + LQ   
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLR 413

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.5 bits (245), Expect = 1e-22
 Identities = 50/280 (17%), Positives = 99/280 (35%), Gaps = 63/280 (22%)

Query: 15  EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKL 74
           +    W  W    +     N     +   L  ++    L L + +LS  +P +     ++
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQI 82

Query: 75  VMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
            +L+I +N  + ++P        SL  L+   N+    LP     L     LD+ +N L+
Sbjct: 83  TVLEITQNALI-SLPELPA----SLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT 133

Query: 135 GSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKL----- 189
             +P+  +                                 L+    + N +  L     
Sbjct: 134 -MLPELPAL--------------------------------LEYINADNNQLTMLPELPT 160

Query: 190 -MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL----ESILSIDFS 244
            + ++ +  N+ +  +P    +L    +LD+S N     +P          E+ +     
Sbjct: 161 SLEVLSVRNNQLT-FLPELPESLE---ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 245 ANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQS 284
            N++   IP++I SL     + L +N LS +I  S   Q+
Sbjct: 216 ENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 45/277 (16%), Positives = 93/277 (33%), Gaps = 43/277 (15%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
               L+L   + S  +PD       + VL +  N    ++P       SL+ L+   N L
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPA---SLEYLDACDNRL 112

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
           S  +P    +   L   D+  N+    +P         L  +N  +N+   +LP      
Sbjct: 113 S-TLPELPASLKHL---DVDNNQLT-MLPELPA----LLEYINADNNQLT-MLPELP--- 159

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           TSL VL + +N L+  +P+   ++ ++  +   + +            +    +      
Sbjct: 160 TSLEVLSVRNNQLT-FLPELPESLEALDVSTNLLES------------LPAVPVRNHH-- 204

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
                  +        +N+ +  IP  I++L    ++ L  N  + RI  S+    +   
Sbjct: 205 -----SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP- 257

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277
            D+   ++Y  +     +                   
Sbjct: 258 -DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQ 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 6e-13
 Identities = 53/257 (20%), Positives = 84/257 (32%), Gaps = 68/257 (26%)

Query: 40  IPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIG-IRFSS 98
           I + +    SL S N   N++SG     F    K     +   E      + +     + 
Sbjct: 3   IMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLINQ 60

Query: 99  LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV 158
              L L        LP+ L     + VL++  N L  S+P+  ++               
Sbjct: 61  FSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS--------------- 101

Query: 159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLD 218
                                         L  L D   N+ S  +P    +L+    LD
Sbjct: 102 ------------------------------LEYL-DACDNRLS-TLPELPASLK---HLD 126

Query: 219 LSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL 278
           +  N  T  +P     LE I   +   NQL   +P+  +SL     L + NN L+    L
Sbjct: 127 VDNNQLT-MLPELPALLEYI---NADNNQL-TMLPELPTSLE---VLSVRNNQLTFLPEL 178

Query: 279 STQLQSFDPSSFTGNRL 295
              L++ D S+   N L
Sbjct: 179 PESLEALDVST---NLL 192

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.5 bits (241), Expect = 1e-22
 Identities = 59/280 (21%), Positives = 105/280 (37%), Gaps = 56/280 (20%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
           L  L L  +N +      L  L+ + SLNL  N       +   N T L  L + E++  
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
              P       + L  L+L  N+   + P  L  LTSLH      N ++   P  ++N++
Sbjct: 169 DVTPIA---NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI--------LKLMRLIDLSK 197
            + +                                  N I        L  +  +++  
Sbjct: 222 RLNSLKIG-----------------------------NNKITDLSPLANLSQLTWLEIGT 252

Query: 198 NKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSIS 257
           N+ S    + + +L  L  L++  N  +    + +  L  + S+  + NQL  E  + I 
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 258 SLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPSSFTGNRL 295
            LT L+ L LS N+++   PL+  +++ S D   F    +
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLASLSKMDSAD---FANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.3 bits (238), Expect = 4e-22
 Identities = 49/248 (19%), Positives = 97/248 (39%), Gaps = 35/248 (14%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
           +  LNLG N+   ++   L  ++ L  L + ++ +    P    N T L  L +  N+  
Sbjct: 134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
              P       +SL       N+   + P  +  +T L+ L + +N ++   P  ++N+S
Sbjct: 191 DISPLA---SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS 243

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205
            +          +   +                 AV+  T L   +++++  N+ S    
Sbjct: 244 QLTWLEIG-TNQISDIN-----------------AVKDLTKL---KMLNVGSNQISD--I 280

Query: 206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRL 265
           S + NL  L SL L+ N         IG L ++ ++  S N +    P  ++SL+ +   
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338

Query: 266 KLSNNNLS 273
             +N  + 
Sbjct: 339 DFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.2 bits (217), Expect = 2e-19
 Identities = 47/271 (17%), Positives = 104/271 (38%), Gaps = 33/271 (12%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
            +   L   + T    ++   L S+  L +    ++  I    +  T L  L++  N+  
Sbjct: 24  GIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQIT 79

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
              P  +      L  L + +NK   +    L  LT+L  L L ++++S   P  ++N++
Sbjct: 80  DISP--LS-NLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLT 132

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI--------LKLMRLIDLSK 197
            M + N     ++   S  +       +  L    V  + +        L  +  + L+ 
Sbjct: 133 KMYSLNLGANHNLSDLSPLSN------MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNY 186

Query: 198 NKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSIS 257
           N+     P  + +L +L       N  T   P  +  +  + S+    N++       ++
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI--TDLSPLA 240

Query: 258 SLTFLSRLKLSNNNLSGKIPLS--TQLQSFD 286
           +L+ L+ L++  N +S    +   T+L+  +
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTKLKMLN 271

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 57/271 (21%), Positives = 101/271 (37%), Gaps = 55/271 (20%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
           L  LNL  N  T   P+S   L  L +L +  N ++    ++ QN T L  L + E+   
Sbjct: 68  LEYLNLNGNQITDISPLSN--LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNIS 123

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
              P  +    + +  LNL +N     L   L  +T L+ L + ++ +    P  I+N++
Sbjct: 124 DISP--LA-NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLT 177

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI--------LKLMRLIDLSK 197
            + + + +                             YN I        L  +       
Sbjct: 178 DLYSLSLN-----------------------------YNQIEDISPLASLTSLHYFTAYV 208

Query: 198 NKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSIS 257
           N+ +   P  + N+  L SL +  N  T   P  +  L  +  ++   NQ+      ++ 
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVK 262

Query: 258 SLTFLSRLKLSNNNLSGKIPLS--TQLQSFD 286
            LT L  L + +N +S    L+  +QL S  
Sbjct: 263 DLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 62/248 (25%)

Query: 50  LQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKF 109
             +L      ++   P    +  + +   + +      V         S+  L +   K 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QE-ELESITKLVVAGEKV 56

Query: 110 RGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYV 169
             +    +  LT+L  L+L  N ++   P  +SN                          
Sbjct: 57  ASIQG--IEYLTNLEYLNLNGNQITDISP--LSN-------------------------- 86

Query: 170 EDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP 229
                            L  +  + +  NK +    S + NL  L  L L+ ++ +   P
Sbjct: 87  -----------------LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP 127

Query: 230 NSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDP 287
             +  L  + S++  AN         +S++T L+ L ++ + +    P++  T L S   
Sbjct: 128 --LANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS- 183

Query: 288 SSFTGNRL 295
                N++
Sbjct: 184 --LNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.0 bits (162), Expect = 3e-12
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 11/151 (7%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
                  N  +   P   M    L  L +GNN  T      L  LS L  L +  N +S 
Sbjct: 202 HYFTAYVNQITDITPVANMT--RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD 257

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
               + ++ TKL ML++G N+ + ++        S L  L L +N+        + GLT+
Sbjct: 258 --INAVKDLTKLKMLNVGSNQ-ISDISVLNN--LSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFS 153
           L  L L+ NH++   P  ++++S M +A+F+
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  LK+G N  +   P   ++   L  L +G N  + +I  ++  L+ L+ LN+  N +S
Sbjct: 223 LNSLKIGNNKITDLSPLANLS--QLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQIS 278

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
               +   N ++L  L +  N+        IG   ++L  L L  N    + P  L  L+
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLS 333

Query: 122 SLHVLDLADNHLS 134
            +   D A+  + 
Sbjct: 334 KMDSADFANQVIK 346

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 56/317 (17%), Positives = 101/317 (31%), Gaps = 32/317 (10%)

Query: 3   RILKLGENHFSGEIPDCWMNWL-DLLVLNLGNNNFTGNI--PISLGMLSSLQSLNLRKNS 59
           RIL LG +     +       L  L  L L     +  +        L +L  L+L KN 
Sbjct: 76  RILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 60  LSG-QIPASFQNCTKLVMLDIGENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLPNQL 117
           +    +  SF     L  +D   N+           ++  +L   +L +N     +    
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 118 CGL------TSLHVLDLADNHLSGSIPK-CISNISSMVTANFSIGTDVQYPSVSTGKYVE 170
                      L +LD++ N  +  I     + IS     +  +   +           +
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 171 ---DALLVLKGKAVE-----YNTI----------LKLMRLIDLSKNKFSGEIPSEIMNLR 212
              +    L   +V      +  +          LK +++++L+ NK +         L 
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 213 ALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNL 272
            L  L+LS N       ++   L  +  ID   N +     Q+   L  L  L L +N L
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 273 SGKIPLSTQLQSFDPSS 289
           +  I     +     S 
Sbjct: 375 T-TIHFIPSIPDIFLSG 390

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.8 bits (215), Expect = 1e-18
 Identities = 54/298 (18%), Positives = 96/298 (32%), Gaps = 44/298 (14%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +R L L            +    DL VLNL  N        +   L +LQ LNL  N L 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
               ++F    K+  +D+ +N     +          L  L+LR N         +  + 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIP 381

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
           S+  + L+ N L  ++PK     + +  +   +  ++                       
Sbjct: 382 SIPDIFLSGNKLV-TLPKINLTANLIHLSENRL-ENLDILYFLLR--------------- 424

Query: 182 EYNTILKLMRLIDLSKNKFSG-EIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA-----L 235
                +  ++++ L++N+FS            +L  L L  N         +       L
Sbjct: 425 -----VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 236 ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN 293
             +  +  + N L    P   S LT L  L L++N L+              +    N
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT----------VLSHNDLPAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.4 bits (214), Expect = 2e-18
 Identities = 48/280 (17%), Positives = 95/280 (33%), Gaps = 10/280 (3%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNI-PISLGMLSSLQSLNLRKNSL 60
              L L  N+        +     L +L LG+      I   +   L +L+ L+L  + +
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 61  SGQIPASFQNCTKLVMLDIGENEF-VGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLC 118
               P +FQ    L  L +         +         +L  L+L  N+ R + L     
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 119 GLTSLHVLDLADNHLSGSIPKCISNIS--SMVTANFSIGTDVQYPSVSTGKYVED-ALLV 175
            L SL  +D + N +       +  +   ++   + +  +     SV  GK +     +V
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235
           L+   V  N     +       N  S      ++    ++      ++      N+   L
Sbjct: 206 LEILDVSGNGWTVDIT--GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263

Query: 236 E--SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
              S+  +D S   ++    +   +L  L  L L+ N ++
Sbjct: 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 83.7 bits (207), Expect = 1e-17
 Identities = 69/393 (17%), Positives = 138/393 (35%), Gaps = 44/393 (11%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +++L L  N  +    + +    +L VLNL  N        +   L  +  ++L+KN ++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 62  GQIPASFQNCTKLVMLDIGENEFV--------------GNVPTWIGIRFSSLMILNLRSN 107
                +F+   KL  LD+ +N                 GN    +     +  +++L  N
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411

Query: 108 KFRGVLPNQ-LCGLTSLHVLDLADNHLSGSIPKCI-SNISSMVTANFSIGTDVQYPSVST 165
           +   +     L  +  L +L L  N  S        S   S+          +Q    + 
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG-ENMLQLAWET- 469

Query: 166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT 225
               E    V +G        L  ++++ L+ N  +   P    +L AL  L L+ N  T
Sbjct: 470 ----ELCWDVFEG--------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 226 GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSF 285
             + ++     ++  +D S NQL    P        LS L +++N    +  LST +   
Sbjct: 518 -VLSHND-LPANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFICECELSTFINWL 572

Query: 286 DPSSFTGNRLCGSPLPNNCFVAAPAPHNE----SEDDIDGNDDGDEDEVNWFYVSLALGF 341
           + ++ T      +  P + +   P   +     S      +++     + +    +    
Sbjct: 573 NHTNVT-----IAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVT 627

Query: 342 VVGFWFVMGPLFVSRKWRSMYYHFLARLGDKNF 374
           +  F   +  +   R +  + Y    RL  K+ 
Sbjct: 628 LTLFLMTILTVTKFRGFCFICYKTAQRLVFKDH 660

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 54/291 (18%), Positives = 91/291 (31%), Gaps = 57/291 (19%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           D  +      N T  +P  L   ++ + L L  N +     +SF    +L +L++G    
Sbjct: 5   DGRIAFYRFCNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
              +         +L IL+L S+K   + P+   GL  L  L L    LS ++       
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV------- 113

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSG-E 203
                                          LK         L     +DLSKN+     
Sbjct: 114 -------------------------------LKDGYFRNLKALT---RLDLSKNQIRSLY 139

Query: 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE--SILSIDFSANQLYGEIPQSISSL-- 259
           +      L +L S+D S N       + +  L+  ++     +AN LY  +         
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 260 ----TFLSRLKLSNNNLSGKIP--LSTQLQSFDPSSFTGNR-LCGSPLPNN 303
                 L  L +S N  +  I    S  +      S      + G+    +
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.1 bits (237), Expect = 6e-22
 Identities = 63/343 (18%), Positives = 125/343 (36%), Gaps = 38/343 (11%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLL-VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
            +I+    +    ++P   ++    + +LNL +         +     ++Q L +  N++
Sbjct: 47  QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
               P  FQN   L +L +  N+   ++P  I      L  L++ +N    +  +     
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG-- 178
           TSL  L L+ N L+  +   +S I S+  AN S        +++    VE+  L      
Sbjct: 165 TSLQNLQLSSNRLT-HVD--LSLIPSLFHANVS---YNLLSTLAIPIAVEE--LDASHNS 216

Query: 179 -KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237
              V     ++L  L  L  N  + +    ++N   LV +DLS N     + +    ++ 
Sbjct: 217 INVVRGPVNVELTIL-KLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLST--------------QLQ 283
           +  +  S N+L   +      +  L  L LS+N+L   +  +                + 
Sbjct: 274 LERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 284 SFDPSSFTGNR---LCGSPLPNNCFVAAPAPHNESEDDIDGND 323
           +   S+    +   L  +    N         N +   +D  D
Sbjct: 332 TLKLSTHHTLKNLTLSHNDWDCNSL--RALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 60/254 (23%)

Query: 25  DLLVLNLGNNNFTGNIPISLGM--LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82
           D +  ++  +  T ++        L++ + +  + +++     A   +  ++ +L++ + 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 83  EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCIS 142
           +    + T+      ++  L +  N  R + P+    +  L VL L  N LS S+P+   
Sbjct: 80  QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR--- 134

Query: 143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRL--IDLSKNKF 200
                                                           +L  + +S N  
Sbjct: 135 -----------------------------------------GIFHNTPKLTTLSMSNNNL 153

Query: 201 SGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL 259
              I  +      +L +L LS N  T  +   +  + S+   + S N L      +++  
Sbjct: 154 E-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIP 204

Query: 260 TFLSRLKLSNNNLS 273
             +  L  S+N+++
Sbjct: 205 IAVEELDASHNSIN 218

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.5 bits (240), Expect = 6e-22
 Identities = 61/304 (20%), Positives = 108/304 (35%), Gaps = 66/304 (21%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
           G  +L +GE+  +  +PDC      +  L + +NN T ++P        L++L +  N L
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQL 93

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
           +  +P       +L +            P       S L  L +  N+    LP    GL
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHL----PALP----SGLCKLWIFGNQLT-SLPVLPPGL 143

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
             L    ++DN L+ S+P   S +                            L     + 
Sbjct: 144 QEL---SVSDNQLA-SLPALPSELCK--------------------------LWAYNNQL 173

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS 240
                +   ++ + +S N+ +  +P+    L     L    N  T  +P     L+    
Sbjct: 174 TSLPMLPSGLQELSVSDNQLA-SLPTLPSELY---KLWAYNNRLT-SLPALPSGLK---E 225

Query: 241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGSP 299
           +  S N+L   +P   S L     L +S N L+  +P+  + L S        N+L  + 
Sbjct: 226 LIVSGNRL-TSLPVLPSELK---ELMVSGNRLT-SLPMLPSGLLSLS---VYRNQL--TR 275

Query: 300 LPNN 303
           LP +
Sbjct: 276 LPES 279

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 52/281 (18%), Positives = 86/281 (30%), Gaps = 56/281 (19%)

Query: 20  WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI 79
           W  W                  +   + +    LN+ ++ L+  +P        +  L I
Sbjct: 12  WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVI 68

Query: 80  GENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139
            +N    ++P         L  L +  N+    LP    GL  L +      HL    P 
Sbjct: 69  PDNNLT-SLPALPP----ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL----PA 118

Query: 140 CISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK 199
             S +  +      + +    P                           L  L  +S N+
Sbjct: 119 LPSGLCKLWIFGNQLTS---LP----------------------VLPPGLQEL-SVSDNQ 152

Query: 200 FSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL 259
            +  +P+    L     L    N  T  +P     L+    +  S NQL   +P   S L
Sbjct: 153 LA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQL-ASLPTLPSEL 203

Query: 260 TFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGSP 299
               +L   NN L+  +P   + L+       +GNRL   P
Sbjct: 204 Y---KLWAYNNRLT-SLPALPSGLKELI---VSGNRLTSLP 237

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 7e-16
 Identities = 49/296 (16%), Positives = 96/296 (32%), Gaps = 54/296 (18%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
            I      H              L  L +  N  T ++P+       LQ L++  N L+ 
Sbjct: 107 SIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP---GLQELSVSDNQLA- 154

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
            +PA      KL   +        N  T + +  S L  L++  N+    LP     L  
Sbjct: 155 SLPALPSELCKLWAYN--------NQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSELYK 205

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182
           L   +   N L+ S+P   S +  ++ +   + +            +      LK   V 
Sbjct: 206 LWAYN---NRLT-SLPALPSGLKELIVSGNRLTS------------LPVLPSELKELMVS 249

Query: 183 YNTILKLMRLI------DLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE 236
            N +  L  L        + +N+ +  +P  +++L +  +++L  N  + R   ++  + 
Sbjct: 250 GNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 237 SILSIDFSANQL------YGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFD 286
              S    +  +          P+   +L   +   L         P   +   F 
Sbjct: 309 ---SAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPA-DRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 8/129 (6%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           + L +  N  +  +P        LL L++  N  T  +P SL  LSS  ++NL  N LS 
Sbjct: 244 KELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS- 297

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
           +                G                 +L      ++        +      
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADR 355

Query: 123 LHVLDLADN 131
            H+    DN
Sbjct: 356 WHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 211 LRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNN 270
                 L++  +  T  +P+ + A   I ++    N L   +P     L     L++S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL-TSLPALPPELR---TLEVSGN 91

Query: 271 NLSGKIPLS-TQLQSFDPSSFTGNRLCGSPLPNN 303
            L+  +P+    L      S     L    LP+ 
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL--PALPSG 122

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 2e-21
 Identities = 61/329 (18%), Positives = 121/329 (36%), Gaps = 36/329 (10%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLL-VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
            +I+    +    ++P   ++    + +LNL +         +     ++Q L +  N++
Sbjct: 53  QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
               P  FQN   L +L +  N+   ++P  I      L  L++ +N    +  +     
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG-- 178
           TSL  L L+ N L+  +   +S I S+  AN S        +++    VE+  L      
Sbjct: 171 TSLQNLQLSSNRLT-HVD--LSLIPSLFHANVS---YNLLSTLAIPIAVEE--LDASHNS 222

Query: 179 -KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES 237
              V     ++L  L  L  N  + +    ++N   LV +DLS N     + +    ++ 
Sbjct: 223 INVVRGPVNVELTIL-KLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLST--------------QLQ 283
           +  +  S N+L   +      +  L  L LS+N+L   +  +                + 
Sbjct: 280 LERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 284 SFDPSSFTGNR---LCGSPLPNNCFVAAP 309
           +   S+    +   L  +    N   A  
Sbjct: 338 TLKLSTHHTLKNLTLSHNDWDCNSLRALF 366

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 60/254 (23%)

Query: 25  DLLVLNLGNNNFTGNIPISLGM--LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN 82
           D +  ++  +  T ++        L++ + +  + +++     A   +  ++ +L++ + 
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 83  EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCIS 142
           +    + T+      ++  L +  N  R + P+    +  L VL L  N LS S+P+   
Sbjct: 86  QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR--- 140

Query: 143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRL--IDLSKNKF 200
                                                           +L  + +S N  
Sbjct: 141 -----------------------------------------GIFHNTPKLTTLSMSNNNL 159

Query: 201 SGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL 259
              I  +      +L +L LS N  T  +   +  + S+   + S N L      +++  
Sbjct: 160 E-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIP 210

Query: 260 TFLSRLKLSNNNLS 273
             +  L  S+N+++
Sbjct: 211 IAVEELDASHNSIN 224

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.8 bits (226), Expect = 3e-20
 Identities = 57/265 (21%), Positives = 111/265 (41%), Gaps = 23/265 (8%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
            +   LG  N T  +  +   L  + +L   +  +        +    L  ++   N+  
Sbjct: 26  KMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLT 81

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
              P  +    + L+ + + +N+   + P  L  LT+L  L L +N ++   P  + N++
Sbjct: 82  DITP--LK-NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI--LKLMRLIDLSKNKFSGE 203
           ++     S  T     ++S    ++   L    +  +   +  L  +  +D+S NK S  
Sbjct: 135 NLNRLELSSNTISDISALSGLTSLQQ--LSFGNQVTDLKPLANLTTLERLDISSNKVSD- 191

Query: 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263
             S +  L  L SL  + N  +   P  +G L ++  +  + NQL  +   +++SLT L+
Sbjct: 192 -ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLT 246

Query: 264 RLKLSNNNLSGKIPLS--TQLQSFD 286
            L L+NN +S   PLS  T+L    
Sbjct: 247 DLDLANNQISNLAPLSGLTKLTELK 271

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 62/309 (20%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L+L  N  S       +    L  L+ GN          L  L++L+ L++  N +S
Sbjct: 136 LNRLELSSNTISDISALSGLT--SLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVS 190

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
               +     T L  L    N+     P       ++L  L+L  N+ + +    L  LT
Sbjct: 191 D--ISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKDIGT--LASLT 243

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
           +L  LDLA+N +S   P  +S ++ +                                  
Sbjct: 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLG---------------------------- 273

Query: 182 EYNTI--------LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIG 233
             N I        L  +  ++L++N+      S I NL+ L  L L  N+ +   P  + 
Sbjct: 274 -ANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VS 328

Query: 234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPSSFT 291
           +L  +  + F  N++      S+++LT ++ L   +N +S   PL+  T++         
Sbjct: 329 SLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG---LN 383

Query: 292 GNRLCGSPL 300
                 +P+
Sbjct: 384 DQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 52/259 (20%), Positives = 98/259 (37%), Gaps = 38/259 (14%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
           L  L++ +N  +      L  L++L+SL    N +S   P      T L  L +  N+  
Sbjct: 179 LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
                      ++L  L+L +N+   + P  L GLT L  L L  N +S   P  ++ ++
Sbjct: 235 DIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205
           ++     +    ++  S  +                     LK +  + L  N  S   P
Sbjct: 288 ALTNLELN-ENQLEDISPISN--------------------LKNLTYLTLYFNNISDISP 326

Query: 206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRL 265
             + +L  L  L    N  +    +S+  L +I  +    NQ+    P  +++LT +++L
Sbjct: 327 --VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 266 KLSNNNLSGKIPLSTQLQS 284
            L++   +          S
Sbjct: 381 GLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 60/296 (20%), Positives = 100/296 (33%), Gaps = 38/296 (12%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             L    N  S   P   +  LD   L+L  N        +L  L++L  L+L  N +S 
Sbjct: 202 ESLIATNNQISDITPLGILTNLD--ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
             P      TKL  L +G N+     P  +    ++L  L L  N+   + P  +  L +
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISP--LA-GLTALTNLELNENQLEDISP--ISNLKN 310

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182
           L  L L  N++S   P  +S+++ +    F     V   S                    
Sbjct: 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFY-NNKVSDVSSLAN---------------- 351

Query: 183 YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSID 242
               L  +  +    N+ S   P  + NL  +  L L+  ++T   P +  A  SI +  
Sbjct: 352 ----LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTV 404

Query: 243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGS 298
            +        P +IS     +   ++ N  S    +S                 G+
Sbjct: 405 KNVTGAL-IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGT 459

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 64/296 (21%), Positives = 113/296 (38%), Gaps = 61/296 (20%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  + +  N  +   P   +   +L  L L NN  T   P+    L++L  L L  N++S
Sbjct: 92  LVDILMNNNQIADITPLANLT--NLTGLTLFNNQITDIDPLKN--LTNLNRLELSSNTIS 147

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR-FSSLMILNLRSNKFRGVLPNQLCGL 120
               ++    T L  L  G       V     +   ++L  L++ SNK   +    L  L
Sbjct: 148 D--ISALSGLTSLQQLSFG-----NQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL 198

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           T+L  L   +N +S   P  +  ++++   + +                           
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLN--------------------------- 229

Query: 181 VEYNTI--------LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSI 232
              N +        L  +  +DL+ N+ S   P  +  L  L  L L  N  +    + +
Sbjct: 230 --GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPL 283

Query: 233 GALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFD 286
             L ++ +++ + NQL    P  IS+L  L+ L L  NN+S   P+S  T+LQ   
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 337

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 52/269 (19%), Positives = 100/269 (37%), Gaps = 35/269 (13%)

Query: 31  LGNNNFTGNIPIS----LGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG 86
           LG+   T + PI+       L+      L K +++  +     +  ++  L         
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI-- 58

Query: 87  NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISS 146
                +    ++L  +N  +N+   + P  L  LT L  + + +N ++   P  ++N+++
Sbjct: 59  KSIDGVE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 147 MVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSK-------NK 199
           +          +              L  L    +  NTI  +  L  L+        N+
Sbjct: 114 LTGLTLF-NNQITDIDPLKN------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 166

Query: 200 FSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL 259
            +   P  + NL  L  LD+S N  +    + +  L ++ S+  + NQ+    P  +  L
Sbjct: 167 VTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGIL 220

Query: 260 TFLSRLKLSNNNLSGKIPLS--TQLQSFD 286
           T L  L L+ N L     L+  T L   D
Sbjct: 221 TNLDELSLNGNQLKDIGTLASLTNLTDLD 249

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 44/255 (17%), Positives = 75/255 (29%), Gaps = 59/255 (23%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             LKLG N  S   P   +    L  L L  N      PI    L +L  L L  N++S 
Sbjct: 268 TELKLGANQISNISPLAGLT--ALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISD 323

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
             P    + TKL  L    N+   +  + +    +++  L+   N+   + P  L  LT 
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKV--SDVSSLA-NLTNINWLSAGHNQISDLTP--LANLTR 376

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182
           +  L L D   + +                                              
Sbjct: 377 ITQLGLNDQAWTNAPV-------------------------------------------- 392

Query: 183 YNTILKLMRLIDLSKNKFSGEI-PSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
                  + + +  KN     I P+ I +  +    D++ N  +             ++I
Sbjct: 393 --NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTI 449

Query: 242 DFSANQLYGEIPQSI 256
                   G + Q +
Sbjct: 450 GKGTTTFSGTVTQPL 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.6 bits (225), Expect = 5e-20
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 27/320 (8%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           ++L L  +  +    D + +   L  L+L +N+ +       G LSSL+ LNL  N    
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112

Query: 63  -QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
             + + F N T L  L IG  E    +        +SL  L +++   R      L  + 
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
            +H L L  +  +  +      +SS+                +  ++    L V +  + 
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELR--------DTNLARFQFSPLPVDEVSSP 224

Query: 182 EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE----- 236
                 +   L D S N+   ++   I+ L  +   D + N      P+    +      
Sbjct: 225 MKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 237 ---SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-----TQLQSFDPS 288
              +I  +      L+ ++    S L  + R+ + N+ +   +P S       L+  D  
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD-- 340

Query: 289 SFTGNRLCGSPLPNNCFVAA 308
             + N +    L N+    A
Sbjct: 341 -LSENLMVEEYLKNSACKGA 359

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 9e-17
 Identities = 45/280 (16%), Positives = 91/280 (32%), Gaps = 50/280 (17%)

Query: 28  VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGN 87
           V +  + +FT +IP  L   ++++SL+L  N ++       + C  L +L +  +     
Sbjct: 9   VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NT 64

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG-SIPKCISNISS 146
           +         SL  L+L  N    +  +    L+SL  L+L  N      +     N+++
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 147 MVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPS 206
           + T                                           + +   +   EI  
Sbjct: 125 LQT-------------------------------------------LRIGNVETFSEIRR 141

Query: 207 E-IMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRL 265
                L +L  L++   S       S+ ++  I  +    ++    +      L+ +  L
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 266 KLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCF 305
           +L + NL+ +   S        S        GS L +  F
Sbjct: 202 ELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 46/296 (15%), Positives = 87/296 (29%), Gaps = 66/296 (22%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGM-----------LSSLQ 51
           R   L +  F+ E+       L+L  +   +    G    +                +++
Sbjct: 231 RGSVLTDESFN-ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 52  SLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRG 111
            L++ +  L   +   +    K+  + +  ++    VP        SL  L+L  N    
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 112 VLPNQ---LCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKY 168
                        SL  L L+ NHL  S+ K    + ++                     
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLK-------------------- 387

Query: 169 VEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRI 228
                               L  L D+S+N F   +P        +  L+LS       +
Sbjct: 388 -------------------NLTSL-DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VV 425

Query: 229 PNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQS 284
                  +++  +D S N L       +  L     L +S N L   +P ++    
Sbjct: 426 KT--CIPQTLEVLDVSNNNL-DSFSLFLPRLQ---ELYISRNKLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 45/277 (16%), Positives = 88/277 (31%), Gaps = 61/277 (22%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGM-LSSLQSLNLRKNSL 60
           IR L + + +   ++   +     +  + + N+     +P S    L SL+ L+L +N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346

Query: 61  SGQI---PASFQNCTKLVMLDIGENEFVGNVPTWIGI--RFSSLMILNLRSNKFRGVLPN 115
             +     A       L  L + +N    ++     I     +L  L++  N F   +P+
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 116 QLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLV 175
                  +  L+L+   +   +  C                                   
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTC----------------------------------- 428

Query: 176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235
                     I + + ++D+S N            L  L  L +S N     +P++    
Sbjct: 429 ----------IPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLPDA-SLF 472

Query: 236 ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNL 272
             +L +  S NQL          LT L ++ L  N  
Sbjct: 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 40/250 (16%), Positives = 76/250 (30%), Gaps = 44/250 (17%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
            +  L+L  N  T      L   ++LQ L L+ + ++     +F +   L  LD+ +N  
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLC-GLTSLHVLDLADNHLSGSIPKCISN 143
                +W G   SSL  LNL  N ++ +    L   LT+L  L + +      I +    
Sbjct: 87  SSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---- 141

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
                                         +   G        L  +  +++        
Sbjct: 142 ------------------------------IDFAG--------LTSLNELEIKALSLRNY 163

Query: 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263
               + ++R +  L L  +     +      L S+  ++     L       +      S
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 264 RLKLSNNNLS 273
            +K      S
Sbjct: 224 PMKKLAFRGS 233

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 5e-13
 Identities = 44/295 (14%), Positives = 86/295 (29%), Gaps = 68/295 (23%)

Query: 2   IRILKLGENHFSGEIPDCWMNWL-DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
           I  L L  +  +  + + + + L  +  L L + N        L +      +       
Sbjct: 174 IHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 61  SGQIPASFQNCTKLV--MLDIGENEFVGNVPTWIG---------------IRFSSLMILN 103
           S     SF    KL+  +L++ E EF       +G               +   ++  L+
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSV 163
           +        L      L  +  + + ++ +         ++ S                 
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS----------------- 335

Query: 164 STGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI---PSEIMNLRALVSLDLS 220
                    L  L                 DLS+N    E     +      +L +L LS
Sbjct: 336 ---------LEFL-----------------DLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 221 CNSFT--GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
            N      +    +  L+++ S+D S N     +P S      +  L LS+  + 
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 45/240 (18%), Positives = 81/240 (33%), Gaps = 23/240 (9%)

Query: 21  MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS-FQNCTKLVMLDI 79
           +  + +  L++       ++     +L  ++ + +  + +   +P S  Q+   L  LD+
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341

Query: 80  GENEFVGNVPTWIGI--RFSSLMILNLRSNKFR--GVLPNQLCGLTSLHVLDLADNHLSG 135
            EN  V            + SL  L L  N  R        L  L +L  LD++ N    
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400

Query: 136 SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI------LKL 189
            +P        M   N S  T ++         +   L VL    V  N +      L  
Sbjct: 401 PMPDSCQWPEKMRFLNLS-STGIR----VVKTCIPQTLEVLD---VSNNNLDSFSLFLPR 452

Query: 190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLY 249
           ++ + +S+NK    +P        L+ + +S N            L S+  I    N   
Sbjct: 453 LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 38/239 (15%), Positives = 75/239 (31%), Gaps = 36/239 (15%)

Query: 70  NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLA 129
           +C    + D     F  ++P+ +    +++  L+L  NK   +    L    +L VL L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 130 DNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTI 186
            + ++        ++ S+                          L L      ++  +  
Sbjct: 59  SSRINTIEGDAFYSLGSLEH------------------------LDLSDNHLSSLSSSWF 94

Query: 187 LKLMRL--IDLSKNKFSG-EIPSEIMNLRALVSLDLSCNSFTGRIP-NSIGALESILSID 242
             L  L  ++L  N +    + S   NL  L +L +        I       L S+  ++
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGSPL 300
             A  L     QS+ S+  +  L L  +  +  + +    L S          L     
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 23/103 (22%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISL----------------- 44
           +R L L        +  C      L VL++ NNN   +  + L                 
Sbjct: 412 MRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLKTLP 467

Query: 45  --GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
              +   L  + + +N L       F   T L  + +  N + 
Sbjct: 468 DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 49/274 (17%), Positives = 82/274 (29%), Gaps = 55/274 (20%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               L+L  N        S      LQ L+L +  +      ++Q+ + L  L +  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHL-SGSIPKCISN 143
             ++        SSL  L         +    +  L +L  L++A N + S  +P+  SN
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
                                                      L  +  +DLS NK    
Sbjct: 148 -------------------------------------------LTNLEHLDLSSNKIQSI 164

Query: 204 IPSEIMNLRAL----VSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQ-SISS 258
             +++  L  +    +SLDLS N     I         +  +    N     + +  I  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 259 LTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG 292
           L  L   +L              L+ FD S+  G
Sbjct: 224 LAGLEVHRLVLGEFRN----EGNLEKFDKSALEG 253

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 49/241 (20%)

Query: 26  LLVLNLGNNNFT--GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE 83
           L  L+L  N  +  G    S    +SL+ L+L  N +   + ++F    +L  LD   + 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 84  FVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISN 143
                   + +   +L+ L++     R        GL+SL VL +A N    +       
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL----- 462

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
                            P + T                     L+ +  +DLS+ +    
Sbjct: 463 -----------------PDIFTE--------------------LRNLTFLDLSQCQLEQL 485

Query: 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263
            P+   +L +L  L+++ N            L S+  I    N        S   + +LS
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC----SCPRIDYLS 541

Query: 264 R 264
           R
Sbjct: 542 R 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 55/321 (17%), Positives = 103/321 (32%), Gaps = 60/321 (18%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNL-GNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            + K  ++   G      +  L +    L   + +  +I      L+++ S +L   ++ 
Sbjct: 242 NLEKFDKSALEG------LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 62  GQIPASFQ-NCTKLVMLDIGENEFVGNVPTWI---------------GIRFSSLMILNLR 105
                S+      L +++    +F       +                +   SL  L+L 
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

Query: 106 SNKFR--GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFS---IGTDVQY 160
            N     G       G TSL  LDL+ N +  ++      +  +   +F    +   +  
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSE 413

Query: 161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLS 220
            SV                       L+ +  +D+S              L +L  L ++
Sbjct: 414 FSVFLS--------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 221 CNSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS 279
            NSF       I   L ++  +D S  QL    P + +SL+ L  L +++N L   +P  
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDG 512

Query: 280 -----TQLQSFDPSSFTGNRL 295
                T LQ         N  
Sbjct: 513 IFDRLTSLQKIW---LHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 54/300 (18%), Positives = 96/300 (32%), Gaps = 24/300 (8%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
           ++L L            + +   L  L L  N        +   LSSLQ L   + +L+ 
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
                  +   L  L++  N              ++L  L+L SNK + +    L  L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 123 LHV----LDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG 178
           + +    LDL+ N ++   P     I         +     + S++  K     L  L+ 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIR-----LHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
             +          L    K+   G     I   R L  LD   +     I +    L ++
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR-LAYLDYYLDD----IIDLFNCLTNV 284

Query: 239 LSIDFSANQLYGEIPQSISSLTF---LSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL 295
            S    +  +     + +   ++      L+L N        L   L+S    +FT N+ 
Sbjct: 285 SSFSLVSVTI-----ERVKDFSYNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKG 337

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 59/277 (21%), Positives = 96/277 (34%), Gaps = 54/277 (19%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
           G + L+L    F  + P   +  L  L      +N  GN    +  L SL+ L+L +N L
Sbjct: 305 GWQHLELVNCKFG-QFPTLKLKSLKRLTFT---SNKGGNAFSEVD-LPSLEFLDLSRNGL 359

Query: 61  S--GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQL 117
           S  G    S    T L  LD+  N  +     ++G     L  L+ + +  + +   +  
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVF 417

Query: 118 CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK 177
             L +L  LD++  H   +     + +SS                          L VL 
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSS--------------------------LEVL- 450

Query: 178 GKAVEYNTILKLMRLIDLSKNKFSGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGALE 236
                            ++ N F      +I   LR L  LDLS        P +  +L 
Sbjct: 451 ----------------KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 237 SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
           S+  ++ ++NQL          LT L ++ L  N   
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 61/318 (19%), Positives = 113/318 (35%), Gaps = 37/318 (11%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLS 61
           + L   E + +        +   L  LN+ +N      +P     L++L+ L+L  N + 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 62  GQIPASFQNCTKL----VMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRG-VLPNQ 116
                  +   ++    + LD+  N  +  +          L  L LR+N     V+   
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTC 220

Query: 117 LCGLTSLHVLDLA------DNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVE 170
           + GL  L V  L       + +L       +  + ++    F +     Y        + 
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID--LF 278

Query: 171 DALLVLKGKAVEYNTILKL--------MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCN 222
           + L  +   ++   TI ++         + ++L   KF  + P+  + L++L  L  + N
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335

Query: 223 SFTGRIPNSIGALESILSIDFSANQLY--GEIPQSISSLTFLSRLKLSNNNL---SGKIP 277
                  + +  L S+  +D S N L   G   QS    T L  L LS N +   S    
Sbjct: 336 KGGN-AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 278 LSTQLQSFDPSSFTGNRL 295
              QL+  D   F  + L
Sbjct: 394 GLEQLEHLD---FQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 5/140 (3%)

Query: 2   IRILKLGENHFSGEIPD--CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS 59
           +  L    ++   ++ +   +++  +L+ L++ + +           LSSL+ L +  NS
Sbjct: 398 LEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 60  LSGQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLC 118
                    F     L  LD+ + +    +        SSL +LN+ SN+ + V      
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 119 GLTSLHVLDLADNHLSGSIP 138
            LTSL  + L  N    S P
Sbjct: 516 RLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 37/218 (16%), Positives = 70/218 (32%), Gaps = 47/218 (21%)

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           +P  +     S   L+L  N  R +          L VLDL+   +         ++S +
Sbjct: 22  IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTILKLMRL--IDLSKNKFSG 202
            T                        L+L G   +++       L  L  +   +   + 
Sbjct: 79  ST------------------------LILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 203 EIPSEIMNLRALVSLDLSCNSFT-GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF 261
                I +L+ L  L+++ N     ++P     L ++  +D S+N++       +  L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 262 LS----RLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL 295
           +      L LS N           +    P +F   RL
Sbjct: 175 MPLLNLSLDLSLN----------PMNFIQPGAFKEIRL 202

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 55/292 (18%), Positives = 89/292 (30%), Gaps = 81/292 (27%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
               L+L     S  +P+   +   L  L    N+ T  +P     L SL   N    +L
Sbjct: 72  QAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 61  SGQIPA---------------SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLR 105
           S   P                  QN + L ++D+  N     +P        SL  +   
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFIAAG 181

Query: 106 SNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST 165
           +N+    LP  L  L  L  +   +N L   +P    ++ S                   
Sbjct: 182 NNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLES------------------- 219

Query: 166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT 225
                                      I    N        E+ NL  L ++    N   
Sbjct: 220 ---------------------------IVAGNNILE--ELPELQNLPFLTTIYADNNLLK 250

Query: 226 GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP 277
             +P+   +LE++   +   N L  ++P+   SLTFL   +   + LS   P
Sbjct: 251 -TLPDLPPSLEAL---NVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 49/277 (17%), Positives = 92/277 (33%), Gaps = 46/277 (16%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             L +  N    ++P+   N   L ++++ NN+    +P       SL+ +    N L  
Sbjct: 134 EYLGVSNNQLE-KLPELQ-NSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE- 186

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
           ++P   QN   L  +    N         +     SL  +   +N        +L  L  
Sbjct: 187 ELP-ELQNLPFLTAIYADNNSL-----KKLPDLPLSLESIVAGNNILE--ELPELQNLPF 238

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182
           L  +   +N L  ++P    ++ ++   +  +              + +    L    V 
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD------------LPELPQSLTFLDVS 285

Query: 183 YNTILKLMRLI------DLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE 236
            N    L  L       + S N+    +     +L     L++S N     +P     LE
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPALPPRLE 340

Query: 237 SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
            +     S N L  E+P+   +L  L    +  N L 
Sbjct: 341 RL---IASFNHL-AEVPELPQNLKQLH---VEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 45/261 (17%), Positives = 88/261 (33%), Gaps = 52/261 (19%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
           L      ++N T  +P+    + S        +      P       ++ +  + +    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC--- 68

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
                           L L +      LP     L SL     + N L+  +P+   ++ 
Sbjct: 69  ---------LDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLK 114

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205
           S++  N ++                             + +  L+  + +S N+   ++P
Sbjct: 115 SLLVDNNNL--------------------------KALSDLPPLLEYLGVSNNQLE-KLP 147

Query: 206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRL 265
            E+ N   L  +D+  NS   ++P+   +LE I       NQL  E    + +L FL+ +
Sbjct: 148 -ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQL--EELPELQNLPFLTAI 200

Query: 266 KLSNNNLSGKIPLSTQLQSFD 286
              NN+L     L   L+S  
Sbjct: 201 YADNNSLKKLPDLPLSLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 53/272 (19%), Positives = 92/272 (33%), Gaps = 72/272 (26%)

Query: 15  EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKL 74
            + DC         L L N   + ++P        L+SL    NSL+ ++P   Q+   L
Sbjct: 64  RLRDCLDR--QAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSL 116

Query: 75  VMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
           ++ +          P         L  L + +N+    LP  L   + L ++D+ +N L 
Sbjct: 117 LVDNNNLKALSDLPP--------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK 166

Query: 135 GSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLID 194
             +P    ++                                                I 
Sbjct: 167 -KLPDLPPSL----------------------------------------------EFIA 179

Query: 195 LSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQ 254
              N+   E+P E+ NL  L ++    NS   ++P+   +LESI       N L  E   
Sbjct: 180 AGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNIL--EELP 231

Query: 255 SISSLTFLSRLKLSNNNLSGKIPLSTQLQSFD 286
            + +L FL+ +   NN L     L   L++ +
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALN 263

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 56/277 (20%), Positives = 94/277 (33%), Gaps = 49/277 (17%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             +  G N    E+P+   N   L  +   NN+    +P       SL+S+    N L  
Sbjct: 176 EFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE- 228

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
                 QN   L  +    N     +P        SL  LN+R N     LP     LT 
Sbjct: 229 -ELPELQNLPFLTTIYADNNLLK-TLPDLPP----SLEALNVRDNYLTD-LPELPQSLTF 281

Query: 123 LHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE 182
           L V +   +     + +   N+  +  ++  I +    P          +L  L    V 
Sbjct: 282 LDVSENIFS----GLSELPPNLYYLNASSNEIRSLCDLPP---------SLEELN---VS 325

Query: 183 YNTILKL------MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE 236
            N +++L      +  +  S N  + E+P    NL+    L +  N      P+   ++E
Sbjct: 326 NNKLIELPALPPRLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVE 380

Query: 237 SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
            +       N    E+P+   +L  L    +  N L 
Sbjct: 381 DL-----RMNSHLAEVPELPQNLKQLH---VETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 48/304 (15%), Positives = 85/304 (27%), Gaps = 64/304 (21%)

Query: 15  EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG------------ 62
           E  + W  W        G         +   +      L L    LS             
Sbjct: 38  EYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLV 97

Query: 63  -------QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPN 115
                  ++P   Q+   L++ +          P         L  L + +N+    LP 
Sbjct: 98  ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQLE-KLPE 148

Query: 116 QLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLV 175
            L   + L ++D+ +N L   +P    ++  +   N  +      P +            
Sbjct: 149 -LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEE---LPELQN---------- 193

Query: 176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL 235
                      L  +  I    N    ++P   ++L    S+    N         +  L
Sbjct: 194 -----------LPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNILE--ELPELQNL 236

Query: 236 ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL 295
             + +I    N L   +P    SL     L + +N L+    L   L   D S    + L
Sbjct: 237 PFLTTIYADNNLL-KTLPDLPPSLE---ALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292

Query: 296 CGSP 299
              P
Sbjct: 293 SELP 296

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 47/287 (16%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             +    N    ++PD  ++   L  +  GNN         L  L  L ++    N L  
Sbjct: 198 TAIYADNNSLK-KLPDLPLS---LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK- 250

Query: 63  QIPASFQNCTKLVMLDIGENEF------------VGNVPTWIGIRFSSLMILNLRSNKFR 110
            +P    +   L + D    +               N+ + +     +L  LN  SN+ R
Sbjct: 251 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310

Query: 111 GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVE 170
             L +      SL  L++++N L   +P     +  ++ +   +              V 
Sbjct: 311 -SLCDLP---PSLEELNVSNNKLI-ELPALPPRLERLIASFNHL------------AEVP 353

Query: 171 DALLVLKGKAVEYNTILKLMRLI----DLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG 226
           +    LK   VEYN + +   +     DL  N    E+P    NL+    L +  N    
Sbjct: 354 ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK---QLHVETNPLR- 409

Query: 227 RIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
             P+   ++E +     ++ ++      +  +   L      +++  
Sbjct: 410 EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 80/249 (32%)

Query: 40  IPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSL 99
           I       + LQ      ++L+ ++P   +N           +E+  N P   G     +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREM 60

Query: 100 MILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ 159
            +  LR            C     H L+L +  LS S+P+   ++ S             
Sbjct: 61  AVSRLRD-----------CLDRQAHELELNNLGLS-SLPELPPHLES------------- 95

Query: 160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDL 219
                                            +  S N  + E+P    +L++L+  + 
Sbjct: 96  ---------------------------------LVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 220 SCNSFTGRIPN---------------SIGALESILSIDFSANQLYGEIPQSISSLTFLSR 264
           +  + +   P                 +     +  ID   N L  ++P    SL     
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL-KKLPDLPPSLE---F 177

Query: 265 LKLSNNNLS 273
           +   NN L 
Sbjct: 178 IAAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 27/167 (16%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L    N     + D   +   L  LN+ NN     +P        L+ L    N L+
Sbjct: 299 LYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPP---RLERLIASFNHLA 350

Query: 62  GQIPASFQNCTKLVMLDIGENEF--------------VGNVPTWIGIRFSSLMILNLRSN 107
            ++P   QN  +L    +  N                + +    +     +L  L++ +N
Sbjct: 351 -EVPELPQNLKQL---HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406

Query: 108 KFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI 154
             R   P+    +  L +             +    +   V  +   
Sbjct: 407 PLR-EFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 36/247 (14%), Positives = 69/247 (27%), Gaps = 73/247 (29%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L + EN FS  + +   N   L  LN  +N    ++     +  SL+ LN+  N L 
Sbjct: 279 LTFLDVSENIFS-GLSELPPN---LYYLNASSNEIR-SLC---DLPPSLEELNVSNNKLI 330

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
            ++PA      +   L    N     VP        +L  L++  N  R   P+    + 
Sbjct: 331 -ELPALPPRLER---LIASFNHLA-EVPELPQ----NLKQLHVEYNPLR-EFPDIPESVE 380

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
            L +     N     +P+   N                                      
Sbjct: 381 DLRM-----NSHLAEVPELPQN-------------------------------------- 397

Query: 182 EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
                   ++ + +  N    E P    ++     L ++          +    + +   
Sbjct: 398 --------LKQLHVETNPLR-EFPDIPESVE---DLRMNSERVVDPYEFAHETTDKLEDD 445

Query: 242 DFSANQL 248
            F  +  
Sbjct: 446 VFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 23/149 (15%), Positives = 40/149 (26%), Gaps = 30/149 (20%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L +  N    E+P        L  L    N+    +P       +L+ L++  N L 
Sbjct: 319 LEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR 370

Query: 62  GQIPASFQNCTKLVM----------------LDIGENEFVGNVPTWIGIRFSSLMILNLR 105
            + P   ++   L M                L +  N      P        S+  L + 
Sbjct: 371 -EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE----SVEDLRMN 424

Query: 106 SNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
           S +              L       +H  
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 20/130 (15%)

Query: 184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL-------- 235
           N     ++      +  + E+P E  N+++      + + +    P   G          
Sbjct: 7   NVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 236 -----ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSS 289
                     ++ +   L   +P+    L     L  S N+L+ ++P     L+S    +
Sbjct: 66  RDCLDRQAHELELNNLGL-SSLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 290 FTGNRLCGSP 299
                L   P
Sbjct: 121 NNLKALSDLP 130

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.8 bits (213), Expect = 6e-19
 Identities = 57/293 (19%), Positives = 104/293 (35%), Gaps = 42/293 (14%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           D  +L+L NN  T         L +L +L L  N +S   P +F    KL  L + +N+ 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
              +P  +     +L  L +  N+   V  +   GL  + V++L  N L        S I
Sbjct: 113 K-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK------SSGI 162

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTILKLMRLIDLSKNKFS 201
            +     F     + Y             + +       +       L  L  L  NK +
Sbjct: 163 ENGA---FQGMKKLSY-------------IRIADTNITTIPQGLPPSLTEL-HLDGNKIT 205

Query: 202 GEIPSEIM-NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT 260
            ++ +  +  L  L  L LS NS +     S+     +  +  + N+L  ++P  ++   
Sbjct: 206 -KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263

Query: 261 FLSRLKLSNNNLSGKIPLSTQLQSFDPSSFT--------GNRLCGSPLPNNCF 305
           ++  + L NNN+S  I  +        +            N +    +  + F
Sbjct: 264 YIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 58/255 (22%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL-SGQIPA-SFQNCTKLVMLDIGENE 83
           L  L +  N  T         L+ +  + L  N L S  I   +FQ   KL  + I +  
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 84  FVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISN 143
               +P  +     SL  L+L  NK   V    L GL +L  L L+ N         IS 
Sbjct: 183 IT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN--------SISA 230

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
           + +   AN                                      +R + L+ NK   +
Sbjct: 231 VDNGSLAN-----------------------------------TPHLRELHLNNNKLV-K 254

Query: 204 IPSEIMNLRALVSLDLSCNSFTG------RIPNSIGALESILSIDFSANQL-YGEIPQSI 256
           +P  + + + +  + L  N+ +         P       S   +   +N + Y EI  S 
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 257 -SSLTFLSRLKLSNN 270
              +   + ++L N 
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 63/212 (29%)

Query: 96  FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIG 155
                +L+L++NK   +       L +LH L L +N +S  I                  
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KIS----------------- 92

Query: 156 TDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALV 215
                           A   L           KL RL  LSKN+   E+P ++   + L 
Sbjct: 93  --------------PGAFAPLV----------KLERL-YLSKNQLK-ELPEKM--PKTLQ 124

Query: 216 SLDLSCNSFTGRIPNSI-GALESILSIDFSANQLYGEI--PQSISSLTFLSRLKLSNNNL 272
            L +  N  T ++  S+   L  ++ ++   N L        +   +  LS +++++ N+
Sbjct: 125 ELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 273 SGKIPLST------------QLQSFDPSSFTG 292
           +  IP               ++   D +S  G
Sbjct: 184 T-TIPQGLPPSLTELHLDGNKITKVDAASLKG 214

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 8/113 (7%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             L L  N  S        N   L  L+L NN     +P  L     +Q + L  N++S 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277

Query: 63  ------QIPASFQNCTKLVMLDIGENEF-VGNVPTWIGIRFSSLMILNLRSNK 108
                   P           + +  N      +             + L + K
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 65/299 (21%), Positives = 115/299 (38%), Gaps = 46/299 (15%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            R+L LG+N       D + ++  L  L L  N  +   P +   L +L++L LR N L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 62  GQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
             IP   F   + L  LDI EN+ V  +  ++     +L  L +  N    +      GL
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 121 TSLHVLDLADNHLSGSIPK-CISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG- 178
            SL  L L   +L+ SIP   +S++  ++                         L L+  
Sbjct: 152 NSLEQLTLEKCNLT-SIPTEALSHLHGLIV------------------------LRLRHL 186

Query: 179 --KAVEYNTILKLMRL--IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP-NSIG 233
              A+   +  +L RL  +++S   +   +    +    L SL ++  + T  +P  ++ 
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245

Query: 234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG 292
            L  +  ++ S N +       +  L  L  ++L             QL   +P +F G
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG----------QLAVVEPYAFRG 294

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.8 bits (210), Expect = 3e-18
 Identities = 51/257 (19%), Positives = 92/257 (35%), Gaps = 36/257 (14%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           +  +L+LG N               L+ L L +N +S   P +F N   L  L +  N  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP-KCISN 143
              +P  +    S+L  L++  NK   +L      L +L  L++ DN L   I  +  S 
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG 150

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTILKLMRL--IDLSKN 198
           ++S+                          L L+     ++    +  L  L  + L   
Sbjct: 151 LNSLEQ------------------------LTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 199 KFSGEIPSEIM-NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIP-QSI 256
             +  I       L  L  L++S   +   +  +     ++ S+  +   L   +P  ++
Sbjct: 187 NIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAV 244

Query: 257 SSLTFLSRLKLSNNNLS 273
             L +L  L LS N +S
Sbjct: 245 RHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.8 bits (192), Expect = 7e-16
 Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 6/139 (4%)

Query: 3   RILKLGENHFSGEIPDCWMNWL-DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
            +L+L   + +  I D     L  L VL + +  +   +  +     +L SL++   +L+
Sbjct: 179 IVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 62  GQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
             +P  + ++   L  L++  N     +   +      L  + L   +   V P    GL
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 121 TSLHVLDLADNHLSGSIPK 139
             L VL+++ N L+ ++ +
Sbjct: 296 NYLRVLNVSGNQLT-TLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 25/250 (10%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               +      F   +P  +   +  + L+L KN +       F +   L  L++ EN  
Sbjct: 12  QDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI- 67

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
           V  V         +L  L LRSN+ + +      GL++L  LD+++N +   +     ++
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204
            ++ +       D     +S             G        L  +  + L K   +  I
Sbjct: 128 YNLKSLEVG---DNDLVYISHR--------AFSG--------LNSLEQLTLEKCNLT-SI 167

Query: 205 PSEIM-NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263
           P+E + +L  L+ L L   +       S   L  +  ++ S       +  +      L+
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227

Query: 264 RLKLSNNNLS 273
            L +++ NL+
Sbjct: 228 SLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 48/249 (19%)

Query: 2   IRILKLGENHFSGEIPD-CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
           ++ L++G+N     I    +     L  L L   N T     +L  L  L  L LR  ++
Sbjct: 130 LKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
           +     SF+   +L +L+I    ++  +     +   +L  L++       V    +  L
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
             L  L+L+ N +S +I                                   L  L    
Sbjct: 248 VYLRFLNLSYNPIS-TIE-------------------------------GSMLHELL--- 272

Query: 181 VEYNTILKLMRLIDLSKNKFSGEIPSEIM-NLRALVSLDLSCNSFTGRIPNSIGALESIL 239
                  +L  +  L   + +  +       L  L  L++S N  T    +   ++ ++ 
Sbjct: 273 -------RLQEI-QLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323

Query: 240 SIDFSANQL 248
           ++   +N L
Sbjct: 324 TLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 25/133 (18%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIP-ISLGMLSSLQSLNLRKNSLS 61
           ++L++    +   +    +  L+L  L++ + N T  +P +++  L  L+ LNL  N +S
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
               +      +L  + +   + +  V  +     + L +LN+  N+   +  +    + 
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 122 SLHVLDLADNHLS 134
           +L  L L  N L+
Sbjct: 321 NLETLILDSNPLA 333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 55/253 (21%), Positives = 90/253 (35%), Gaps = 34/253 (13%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           D  +L+L NN+ +         L  L +L L  N +S     +F    KL  L I +N  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
           V  +P  +    SSL+ L +  N+ R V      GL +++ +++  N L           
Sbjct: 115 V-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE---------- 160

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTILKLMRLIDLSKNKFS 201
           +S        G  + Y             L +       +  +    L  L  L  NK  
Sbjct: 161 NSGFEPGAFDGLKLNY-------------LRISEAKLTGIPKDLPETLNEL-HLDHNKIQ 206

Query: 202 GEIPSEIM-NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT 260
             I  E +     L  L L  N        S+  L ++  +    N+L   +P  +  L 
Sbjct: 207 -AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 261 FLSRLKLSNNNLS 273
            L  + L  NN++
Sbjct: 265 LLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 46/275 (16%), Positives = 81/275 (29%), Gaps = 78/275 (28%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE-- 83
           L  L +  N+      I   + SSL  L +  N +       F     +  +++G N   
Sbjct: 104 LQKLYISKNHLVE---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

Query: 84  --------FVG----------NVPTWIGIR-FSSLMILNLRSNKFRGVLPNQLCGLTSLH 124
                   F G             T I      +L  L+L  NK + +    L   + L+
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN 184
            L L  N         I  I +   +                                  
Sbjct: 221 RLGLGHN--------QIRMIENGSLSF--------------------------------- 239

Query: 185 TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSI-------GALES 237
             L  +R + L  NK S  +P+ + +L+ L  + L  N+ T ++  +             
Sbjct: 240 --LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 238 ILSIDFSANQL-YGEIPQSI-SSLTFLSRLKLSNN 270
              I    N + Y E+  +    +T    ++  N 
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 36/213 (16%), Positives = 62/213 (29%), Gaps = 45/213 (21%)

Query: 2   IRILKLGENHF-SGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL 60
           +  +++G N   +        + L L  L +     TG   I   +  +L  L+L  N +
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG---IPKDLPETLNELHLDHNKI 205

Query: 61  SGQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
              I        +KL  L                          L  N+ R +    L  
Sbjct: 206 Q-AIELEDLLRYSKLYRLG-------------------------LGHNQIRMIENGSLSF 239

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFS------IGTDVQYPSVSTGKYVEDAL 173
           L +L  L L +N LS  +P  + ++  +            +G +   P     K      
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

Query: 174 LVLKGKAVEYNTI-------LKLMRLIDLSKNK 199
           + L    V Y  +       +     I     K
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 42/221 (19%), Positives = 68/221 (30%), Gaps = 69/221 (31%)

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           VP  I        +L+L++N    +  +   GL  L+ L L +N +S  I          
Sbjct: 48  VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIH--------- 94

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSE 207
                                 E A   L+          KL +L  +SKN    EIP  
Sbjct: 95  ----------------------EKAFSPLR----------KLQKL-YISKNHLV-EIPPN 120

Query: 208 IMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF----LS 263
           +    +LV L +  N            L ++  I+   N L            F    L+
Sbjct: 121 L--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---GFEPGAFDGLKLN 175

Query: 264 RLKLSNNNLSGKIPLST------------QLQSFDPSSFTG 292
            L++S   L+  IP               ++Q+ +      
Sbjct: 176 YLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIELEDLLR 215

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 16/123 (13%)

Query: 190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLY 249
             L+DL  N  S     +   L+ L +L L  N  +     +   L  +  +  S N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL- 114

Query: 250 GEIPQSISSLTF--LSRLKLSNNNLSGKIPLST-----QLQSFDPSSFTGNRLCGSPLPN 302
                 I       L  L++ +N +  K+P         +   +     GN L  S    
Sbjct: 115 ----VEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMG---GNPLENSGFEP 166

Query: 303 NCF 305
             F
Sbjct: 167 GAF 169

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 61/284 (21%), Positives = 103/284 (36%), Gaps = 36/284 (12%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           +  +LNL  N        S   L  L+ L L +N +      +F     L  L++ +N  
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR- 123

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLAD-NHLSGSIPKCISN 143
           +  +P    +  S L  L LR+N    +       + SL  LDL +   LS         
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG-KAVEYNTILKLMRL--IDLSKNKF 200
           +S++                          L L      E   +  L++L  +DLS N  
Sbjct: 184 LSNLRY------------------------LNLAMCNLREIPNLTPLIKLDELDLSGNHL 219

Query: 201 SGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI-SS 258
           S  I       L  L  L +  +       N+   L+S++ I+ + N L   +P  + + 
Sbjct: 220 S-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTP 277

Query: 259 LTFLSRLKLSNNNLS---GKIPLSTQLQSFDPSSFTGNRLCGSP 299
           L  L R+ L +N  +     + LS  ++   PS+      C +P
Sbjct: 278 LHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 26/250 (10%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               +     N    +P   G+ ++ + LNL +N +      SF++   L +L +  N  
Sbjct: 44  QFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH- 99

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-SN 143
           +  +        ++L  L L  N+   +       L+ L  L L +N +  SIP    + 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
           I S+   +  +G   +   +S G          +G        L  +R ++L+      E
Sbjct: 159 IPSLRRLD--LGELKRLSYISEG--------AFEG--------LSNLRYLNLAMCNLR-E 199

Query: 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263
           IP+ +  L  L  LDLS N  +   P S   L  +  +    +Q+      +  +L  L 
Sbjct: 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 264 RLKLSNNNLS 273
            + L++NNL+
Sbjct: 259 EINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 3   RILKLGENHFSGEIP-DCWMNWLDLLVLNLGNNNFTGNIPI-SLGMLSSLQSLNLRKNSL 60
           + L L  N     IP   +     L  L+LG       I   +   LS+L+ LNL   +L
Sbjct: 139 KELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
             +IP       KL  LD+  N     +          L  L +  ++ + +  N    L
Sbjct: 198 R-EIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 121 TSLHVLDLADNHLSGSIP 138
            SL  ++LA N+L+  +P
Sbjct: 255 QSLVEINLAHNNLT-LLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 3   RILKLGENHFSGEIPDCWMNWLD-LLVLNLGNNNFTGNIPISL-GMLSSLQSLNL-RKNS 59
             L+L +N  +  IP+    +L  L  L L NN    +IP      + SL+ L+L     
Sbjct: 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
           LS     +F+  + L  L++        +P    +    L  L+L  N    + P    G
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPL--IKLDELDLSGNHLSAIRPGSFQG 229

Query: 120 LTSLHVLDLADNHLSGSIPK 139
           L  L  L +  + +   I +
Sbjct: 230 LMHLQKLWMIQSQIQ-VIER 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 44/212 (20%), Positives = 75/212 (35%), Gaps = 47/212 (22%)

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           VP  I    ++  +LNL  N+ + +  N    L  L +L L+ NH+        + ++++
Sbjct: 58  VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTILKLMRL--IDLSKNKFSG 202
            T                        L L       +     + L +L  + L  N    
Sbjct: 115 NT------------------------LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE- 149

Query: 203 EIPSEI-MNLRALVSLDLS-CNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT 260
            IPS     + +L  LDL      +     +   L ++  ++ +   L  EIP +++ L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLI 207

Query: 261 FLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG 292
            L  L LS N           L +  P SF G
Sbjct: 208 KLDELDLSGN----------HLSAIRPGSFQG 229

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 191 RLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG 250
           RL++L +N+      +   +LR L  L LS N        +   L ++ +++   N+L  
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-T 125

Query: 251 EIPQSI-SSLTFLSRLKLSNNNLSGKIPLS-----TQLQSFDPSSFTGNRLCGSPLPNNC 304
            IP      L+ L  L L NN +   IP         L+  D       RL  S +    
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL--KRL--SYISEGA 180

Query: 305 F 305
           F
Sbjct: 181 F 181

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 1e-16
 Identities = 51/283 (18%), Positives = 84/283 (29%), Gaps = 52/283 (18%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLD---LLVLNLGNNNFTGNIPISLGMLS--SLQSLNLR 56
           ++ L +        I    +  L    L  L L N   TG  P  L   +   L  LNLR
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 57  KNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQ 116
             S + +                  + ++  +  W+      L +L++           Q
Sbjct: 130 NVSWATR------------------DAWLAELQQWLK---PGLKVLSIAQAHSLNFSCEQ 168

Query: 117 LCGLTSLHVLDLADNHLSGSIP----KCISNISSMVTANFSIGTDVQYPSVSTGKYVEDA 172
           +    +L  LDL+DN   G        C     ++                         
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR----------------NAG 212

Query: 173 LLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM-NLRALVSLDLSCNSFTGRIPNS 231
           +    G           ++ +DLS N       +        L SL+LS      ++P  
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271

Query: 232 IGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274
           + A   +  +D S N+L    P S   L  +  L L  N    
Sbjct: 272 LPA--KLSVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 34/149 (22%), Positives = 50/149 (33%), Gaps = 11/149 (7%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPIS----LGMLSSLQSLNLR 56
           G+++L + + H      +    +  L  L+L +N   G   +          +LQ L LR
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 57  KN---SLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL 113
                + SG   A      +L  LD+  N              S L  LNL     + V 
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269

Query: 114 PNQLCGLTSLHVLDLADNHLSGSIPKCIS 142
                    L VLDL+ N L    P    
Sbjct: 270 K---GLPAKLSVLDLSYNRLD-RNPSPDE 294

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 56/270 (20%), Positives = 91/270 (33%), Gaps = 26/270 (9%)

Query: 24  LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS---FQNCTKLVMLDIG 80
           L+ L+  +      G     +  LS L+ L +R   +  +I          + L  L + 
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 81  ENEFVGNVPTWIG-IRFSSLMILNLRSNKFRGVLPN----QLCGLTSLHVLDLADNHLSG 135
             E  G  P  +       L ILNLR+  +          Q      L VL +A  H   
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 136 SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDL 195
              + +    ++ T + S             + +  AL  LK         L+++ L + 
Sbjct: 164 FSCEQVRVFPALSTLDLS------DNPELGERGLISALCPLKFPT------LQVLALRNA 211

Query: 196 SKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA-LESILSIDFSANQLYGEIPQ 254
                SG   +       L  LDLS NS               + S++ S   L  ++P+
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270

Query: 255 SISSLTFLSRLKLSNNNLSGKIPLSTQLQS 284
            + +   LS L LS N L    P   +L  
Sbjct: 271 GLPAK--LSVLDLSYNRLDR-NPSPDELPQ 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 194 DLSKNKFSGEIPSEIMNL--RALVSLDLSCNSFTGRIPN----SIGALESILSIDFSANQ 247
            L   + +G  P  ++      L  L+L   S+  R              +  +  +   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 248 LYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSS 289
                 + +     LS L LS+N   G+  L + L      +
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 55/281 (19%), Positives = 102/281 (36%), Gaps = 30/281 (10%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           +   LNL  NN       +   L  L+ L L +NS+      +F     L  L++ +N  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLAD-NHLSGSIPKCISN 143
           +  +P+      S L  L LR+N    +       + SL  LDL +   L          
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
           + ++   N           +                       L  +  +++S N F  E
Sbjct: 195 LFNLKYLNLG---MCNIKDMPNLTP------------------LVGLEELEMSGNHFP-E 232

Query: 204 IPSE-IMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI-SSLTF 261
           I       L +L  L +  +  +    N+   L S++ ++ + N L   +P  + + L +
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRY 291

Query: 262 LSRLKLSNNNLS---GKIPLSTQLQSFDPSSFTGNRLCGSP 299
           L  L L +N  +     + L+  L+ + P++ T    C +P
Sbjct: 292 LVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAP 332

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 4e-14
 Identities = 51/260 (19%), Positives = 94/260 (36%), Gaps = 46/260 (17%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               +       +  +P   G+ S+ + LNL +N++      +F++   L +L +G N  
Sbjct: 55  QFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS- 110

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-SN 143
           +  +        +SL  L L  N    +       L+ L  L L +N +  SIP    + 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNR 169

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI----------LKLMRLI 193
           + S++                         L L     E   +          L  ++ +
Sbjct: 170 VPSLMR------------------------LDLG----ELKKLEYISEGAFEGLFNLKYL 201

Query: 194 DLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIP 253
           +L       ++P+ +  L  L  L++S N F    P S   L S+  +    +Q+     
Sbjct: 202 NLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 254 QSISSLTFLSRLKLSNNNLS 273
            +   L  L  L L++NNLS
Sbjct: 260 NAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 3   RILKLGENHFSGEIPDCWMNWLD-LLVLNLGNNNFTGNIPI-SLGMLSSLQSLNLRKNSL 60
           R L L  N     IP    N +  L+ L+LG       I   +   L +L+ LNL   ++
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
              +P        L  L++  N F   +        SSL  L + +++   +  N   GL
Sbjct: 209 K-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 121 TSLHVLDLADNHLSGSIP 138
            SL  L+LA N+LS S+P
Sbjct: 266 ASLVELNLAHNNLS-SLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLV-LNLGNNNFTGNIPI-SLGMLSSLQSLNL-RKNS 59
             L+L +N  +  IP     +L  L  L L NN    +IP  +   + SL  L+L     
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
           L      +F+    L  L++G      ++P    +    L  L +  N F  + P    G
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPL--VGLEELEMSGNHFPEIRPGSFHG 240

Query: 120 LTSLHVLDLADNHLSGSIPK 139
           L+SL  L + ++ +S  I +
Sbjct: 241 LSSLKKLWVMNSQVS-LIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 53/227 (23%)

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           VP  I    S+   LNL  N  + +  +    L  L VL L  N +        + ++S+
Sbjct: 69  VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTILKLMRL--IDLSKNKFSG 202
            T                        L L       +       L +L  + L  N    
Sbjct: 126 NT------------------------LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE- 160

Query: 203 EIPSEI-MNLRALVSLDLS-CNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT 260
            IPS     + +L+ LDL            +   L ++  ++     +  ++P +++ L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 261 FLSRLKLSNNNLSGKIPLST---------------QLQSFDPSSFTG 292
            L  L++S N+   +I   +               Q+   + ++F G
Sbjct: 219 GLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 52/309 (16%), Positives = 99/309 (32%), Gaps = 56/309 (18%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGM---LSSLQSLNLRK 57
               L+L  N         +     L  L+L +N  +             +SL+ L+L  
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLSF 87

Query: 58  NSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL 117
           N +   + ++F    +L  LD   +         + +   +L+ L++     R       
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 118 CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK 177
            GL+SL VL +A N    +                                  D    L+
Sbjct: 147 NGLSSLEVLKMAGNSFQENFL-------------------------------PDIFTELR 175

Query: 178 GKAVEYNTILKLMRLIDLSKNKFSGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGALE 236
                      L  L DLS+ +   ++      +L +L  L++S N+F          L 
Sbjct: 176 ----------NLTFL-DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 237 SILSIDFSANQLYGEIPQSI--SSLTFLSRLKLSNNNLS---GKIPLSTQLQSFDPSSFT 291
           S+  +D+S N +     +       + L+ L L+ N+ +           ++        
Sbjct: 224 SLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 282

Query: 292 GNRL-CGSP 299
             R+ C +P
Sbjct: 283 VERMECATP 291

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 48/248 (19%), Positives = 84/248 (33%), Gaps = 26/248 (10%)

Query: 29  LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF-VGN 87
           +   +   T ++P  +   SS   L L  N L       F   T+L  L +  N      
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-SNISS 146
             +      +SL  L+L  N     + +   GL  L  LD   ++L       +  ++ +
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 147 MVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPS 206
           ++  + S            G        +  G        L  + ++ ++ N F      
Sbjct: 128 LIYLDIS---HTHTRVAFNG--------IFNG--------LSSLEVLKMAGNSFQENFLP 168

Query: 207 EI-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRL 265
           +I   LR L  LDLS        P +  +L S+  ++ S N  +         L  L  L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 266 KLSNNNLS 273
             S N++ 
Sbjct: 229 DYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 39/192 (20%), Positives = 60/192 (31%), Gaps = 48/192 (25%)

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           VPT I    SS   L L SNK + +       LT L  L L+ N LS           S 
Sbjct: 22  VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS------FKGCCSQ 72

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSE 207
                                                     ++ +DLS N     + S 
Sbjct: 73  SDFG-----------------------------------TTSLKYLDLSFNGVI-TMSSN 96

Query: 208 IMNLRALVSLDLSCNSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSI-SSLTFLSRL 265
            + L  L  LD   ++       S+  +L +++ +D S           I + L+ L  L
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVL 155

Query: 266 KLSNNNLSGKIP 277
           K++ N+      
Sbjct: 156 KMAGNSFQENFL 167

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 28/122 (22%), Positives = 37/122 (30%), Gaps = 13/122 (10%)

Query: 191 RLIDLSKNKFSGEIPSEIMNLRALVSLDLSCN--SFTGRIPNSIGALESILSIDFSANQL 248
             ++L  NK           L  L  L LS N  SF G    S     S+  +D S N +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 249 YGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-----TQLQSFDPSSFTGNRLCGSPLPNN 303
              +  +   L  L  L   ++NL      S       L   D S             N 
Sbjct: 91  -ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH---THT--RVAFNG 144

Query: 304 CF 305
            F
Sbjct: 145 IF 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 59/280 (21%), Positives = 90/280 (32%), Gaps = 52/280 (18%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               + L  N  +     S     +L  L L  N L+    A+F     L  LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
           + +V          L  L+L     + + P    GL +L  L L DN L  ++P      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP------ 145

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204
                                    +D    L            L  L  L  N+ S  +
Sbjct: 146 -------------------------DDTFRDLG----------NLTHL-FLHGNRIS-SV 168

Query: 205 PSEI-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI-SSLTFL 262
           P      L +L  L L  N      P++   L  ++++   AN L   +P    + L  L
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRAL 227

Query: 263 SRLKLSNNNLS---GKIPLSTQLQSFDPSSFTGNRLCGSP 299
             L+L++N         PL   LQ F     +    C  P
Sbjct: 228 QYLRLNDNPWVCDCRARPLWAWLQKF--RGSSSEVPCSLP 265

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 3   RILKLGENHFSGEIPDCWMNWLD-LLVLNLGNNNFTGNIPIS-LGMLSSLQSLNLRKNSL 60
            IL L  N  +  I       L  L  L+L +N    ++  +    L  L +L+L +  L
Sbjct: 59  TILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 61  SGQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
             ++    F+    L  L + +N     +P        +L  L L  N+   V      G
Sbjct: 118 Q-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 120 LTSLHVLDLADNHLSGSIPK 139
           L SL  L L  N ++  +  
Sbjct: 176 LHSLDRLLLHQNRVA-HVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 7/140 (5%)

Query: 3   RILKLGENHFSGEIP-DCWMNWLDLLVLNLGNNNFTGNIPI-SLGMLSSLQSLNLRKNSL 60
             L L +N     +    +     L  L+L        +       L++LQ L L+ N+L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 61  SGQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
              +P  +F++   L  L +  N    +VP        SL  L L  N+   V P+    
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 120 LTSLHVLDLADNHLSGSIPK 139
           L  L  L L  N+LS ++P 
Sbjct: 200 LGRLMTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 5/131 (3%)

Query: 3   RILKLGENHFSGEIPDCWMNWLD-LLVLNLGNNNFTGNIPI-SLGMLSSLQSLNLRKNSL 60
             L L       E+       L  L  L L +N     +P  +   L +L  L L  N +
Sbjct: 108 HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165

Query: 61  SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
           S     +F+    L  L + +N    +V          LM L L +N    +    L  L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 121 TSLHVLDLADN 131
            +L  L L DN
Sbjct: 225 RALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 48/181 (26%)

Query: 96  FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIG 155
            ++   + L  N+   V         +L +L L  N         ++ I +         
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--------LARIDAAAFTG---- 78

Query: 156 TDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI-MNLRAL 214
                                          L L+  +DLS N     +       L  L
Sbjct: 79  -------------------------------LALLEQLDLSDNAQLRSVDPATFHGLGRL 107

Query: 215 VSLDLSCNSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSI-SSLTFLSRLKLSNNNL 272
            +L L        +   +   L ++  +    N L   +P      L  L+ L L  N +
Sbjct: 108 HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRI 165

Query: 273 S 273
           S
Sbjct: 166 S 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 6e-14
 Identities = 48/252 (19%), Positives = 89/252 (35%), Gaps = 45/252 (17%)

Query: 26  LLVLNLGNNNFTGNIPISLGM---LSSLQSLNLRKNSLSGQIPAS-FQNCTKLVMLDIGE 81
           L  L+L  N  +    +S      LSSL  LNL  N        S F + TKL +L +G 
Sbjct: 102 LEHLDLSYNYLSN---LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 82  NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI 141
            +    +        + L  L + ++  +   P  L  + ++  L L        + +  
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217

Query: 142 SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS 201
            +++S V                         L L       +T L      +LS  + +
Sbjct: 218 VDVTSSVE-----------------------CLEL------RDTDLDTFHFSELSTGETN 248

Query: 202 GEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI-SSLT 260
                 ++      ++ ++  S   ++   +  +  +L ++FS NQL   +P  I   LT
Sbjct: 249 S-----LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLT 301

Query: 261 FLSRLKLSNNNL 272
            L ++ L  N  
Sbjct: 302 SLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 6e-11
 Identities = 35/266 (13%), Positives = 85/266 (31%), Gaps = 31/266 (11%)

Query: 28  VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGN 87
           +    + +   +IP   G+  +++SL+L  N ++    +  Q C  L  L +  N  +  
Sbjct: 35  ICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INT 90

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           +         SL  L+L  N    +  +    L+SL  L+L  N    ++ +        
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT 149

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSE 207
                 +G    +  +              G        L  +  +++  +        +
Sbjct: 150 KLQILRVGNMDTFTKIQRK--------DFAG--------LTFLEELEIDASDLQ-SYEPK 192

Query: 208 I-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF----- 261
              +++ +  L L        +   +    S+  ++     L       +S+        
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 262 ---LSRLKLSNNNLSGKIPLSTQLQS 284
                 +K+++ +L   + L  Q+  
Sbjct: 253 KFTFRNVKITDESLFQVMKLLNQISG 278

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.0 bits (169), Expect = 5e-13
 Identities = 67/287 (23%), Positives = 109/287 (37%), Gaps = 42/287 (14%)

Query: 26  LLVLNLGNNNFTGNIPISLGM---LSSLQSLNLRKNSLSGQIPAS-FQNCTKLVMLDIGE 81
           L VL L   N  G   +S      L+SL+ L LR N++    PAS F N  +  +LD+  
Sbjct: 105 LEVLTLTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

Query: 82  NEFVGNVP--TWIGIRFSSLMILNLRSNKFRGVLPNQLC--------GLTSLHVLDLADN 131
           N+   ++     +  +     +L L S   + +    L           TS+  LDL+ N
Sbjct: 164 NKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222

Query: 132 HLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKL-- 189
               S+ K   +  +        GT +Q   +S    +  +      K  +  T   L  
Sbjct: 223 GFKESMAKRFFDAIA--------GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 190 --MRLIDLSKNKFSGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN 246
             ++  DLSK+K    +   +  +   L  L L+ N       N+   L  +L ++ S N
Sbjct: 275 SGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333

Query: 247 QLYGEIPQSI-SSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTG 292
            L G I   +  +L  L  L LS N           +++    SF G
Sbjct: 334 FL-GSIDSRMFENLDKLEVLDLSYN----------HIRALGDQSFLG 369

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 53/278 (19%), Positives = 102/278 (36%), Gaps = 21/278 (7%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPA-SFQNCTKLVMLDIGENE 83
            +  ++L  N+       S   L  LQ L + + +    I   +F+  + L++L +  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 84  FVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQLCGLTSLHVLDLADNHLSGSIPKCI 141
           F+  + T      ++L +L L      G +   N    LTSL +L L DN++    P   
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 142 -SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKF 200
             N+      + +     +  S+      E+ LL  +GK       L  + L D+++   
Sbjct: 150 FLNMRRFHVLDLT---FNKVKSIC-----EEDLLNFQGKHFTLLR-LSSITLQDMNEYWL 200

Query: 201 SGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI-----LSIDFSANQLYGEIPQS 255
             E         ++ +LDLS N F   +        +      L +  S N        +
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 256 ISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTG 292
                  +   L  + +     LS +++ +   S F+ 
Sbjct: 261 FKDPDNFTFKGLEASGVK-TCDLSKSKIFALLKSVFSH 297

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 51/266 (19%), Positives = 91/266 (34%), Gaps = 45/266 (16%)

Query: 48  SSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSN 107
           + +  ++L  NS++     SF     L  L + +      +        SSL+IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 108 KFRGVLPNQLCGLTSLHVLDLADNHL-SGSIPKCISNISSMVTANFSIGTDVQYPSVSTG 166
           +F  +      GL +L VL L   +L    +              F   T ++       
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF----------FKPLTSLEM------ 133

Query: 167 KYVEDALLVLKG---KAVEYNTI---LKLMRLIDLSKNKFSGEIPSEI-----------M 209
                  LVL+    K ++  +    ++   ++DL+ NK    I  E            +
Sbjct: 134 -------LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLL 185

Query: 210 NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL---TFLSRLK 266
            L ++   D++          +     SI ++D S N     + +        T +  L 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 267 LSNNNLSGKIPLSTQLQSFDPSSFTG 292
           LSN+   G     T  +  D  +F G
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWL-DLLVLNLGNNNFTGNIPI-SLGMLSSLQSLNLRKN 58
           G++   L ++     +     +   DL  L L  N     I   +   L+ L  LNL +N
Sbjct: 276 GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 59  SLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLC 118
            L       F+N  KL +LD+  N     +     +   +L  L L +N+ + V      
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 119 GLTSLHVLDLADN 131
            LTSL  + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 2   IRILKLGENHFSGEIPDCW---MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKN 58
                 G  +F  +  +     +    +   +L  +     +       + L+ L L +N
Sbjct: 251 NMGSSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 59  SLSGQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL 117
            ++ +I   +F   T L+ L++ +N   G++ + +      L +L+L  N  R +     
Sbjct: 310 EIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 118 CGLTSLHVLDLADNHLSGSIP 138
            GL +L  L L  N L  S+P
Sbjct: 368 LGLPNLKELALDTNQLK-SVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 56/298 (18%), Positives = 93/298 (31%), Gaps = 73/298 (24%)

Query: 2   IRILKLGENHFSGEIPDCWMN--WLDLLVLNLGNNNFTGNIPISLGM--------LSSLQ 51
             +L L  N       +  +N       +L L +          LG          +S+ 
Sbjct: 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215

Query: 52  SLNLRKNSLSGQIPASF-------------QNCTKLVMLDIGENEFVGNVP-TWIGIRFS 97
           +L+L  N     +   F              + +  +    G   F      T+ G+  S
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275

Query: 98  SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD 157
            +   +L  +K   +L +     T L  L LA N ++  I                    
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KID------------------- 315

Query: 158 VQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI-MNLRALVS 216
                       ++A   L            L++L +LS+N     I S +  NL  L  
Sbjct: 316 ------------DNAFWGLT----------HLLKL-NLSQNFLG-SIDSRMFENLDKLEV 351

Query: 217 LDLSCNSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSI-SSLTFLSRLKLSNNNL 272
           LDLS N     + +     L ++  +    NQL   +P  I   LT L ++ L  N  
Sbjct: 352 LDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 4e-12
 Identities = 44/280 (15%), Positives = 96/280 (34%), Gaps = 22/280 (7%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
              +LN+  N  +      +  LS L+ L +  N +     + F+   +L  LD+  N+ 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCISN 143
              +         +L  L+L  N F  + +  +   ++ L  L L+  HL  S    I++
Sbjct: 82  -VKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVE--------------DALLVLKGKAVEYNTILKL 189
           ++          T  +       +                   +L +  K V    +  +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL---ESILSIDFSAN 246
             +++ +K  +   I +++     L +L L+    T      I  L    ++     S  
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 247 QLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFD 286
           +L G++       +  S   LS + +   +    Q   ++
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.7 bits (160), Expect = 8e-12
 Identities = 56/297 (18%), Positives = 112/297 (37%), Gaps = 40/297 (13%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGML---SSLQSLNLRKNS 59
            +L+  +  +   I         L  L L N   T N  I +  L   +++   ++    
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 60  LSGQI-----PASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP 114
           L GQ+       S  +   L +  +  + F G   ++I   FS++ I N   +  R V  
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 115 NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALL 174
                ++    LD ++N L+ ++ +   +++ + T         Q   +S    +   + 
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ---MNQLKELSKIAEMTTQMK 374

Query: 175 VLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIG 233
            L              + +D+S+N  S +         ++L+SL++S N  T  I   + 
Sbjct: 375 SL--------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSF 290
               I  +D  +N++   IP+ +  L  L  L +++N          QL+S     F
Sbjct: 420 -PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASN----------QLKSVPDGIF 464

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 54/309 (17%), Positives = 100/309 (32%), Gaps = 35/309 (11%)

Query: 26  LLVLNLGNNNFTGNIPIS--LGMLSSLQSLNLRKNSLSGQIPASFQNCTKL-VMLDIGEN 82
           L  L+L  N F   +PI    G +S L+ L L    L         +     V+L +GE 
Sbjct: 92  LKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 83  EFVGNVPTWI-GIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI 141
                 P  +      SL I+   + +F  +L   +  + +L + ++            +
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 142 SNISSMVTANF--------------SIGTDVQYPSVSTGKYVEDALLVLKGKAVEY---- 183
           S ++ + T                 S    +Q    +T  Y   + + L+G+        
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 184 -NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSID 242
             T LK + +  +  + F             +   + + +            +   L +D
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-------TQLQSFDPSSFTGNRL 295
           FS N L   + ++   LT L  L L  N L  ++            LQ  D    + N +
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD---ISQNSV 386

Query: 296 CGSPLPNNC 304
                  +C
Sbjct: 387 SYDEKKGDC 395

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 25/153 (16%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGM---LSSLQSLNLRKNS 59
             L    N  +  + +   +  +L  L L  N     +     M   + SLQ L++ +NS
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNS 385

Query: 60  LSGQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIG--------------------IRFSS 98
           +S             L+ L++  N     +   +                     ++  +
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEA 445

Query: 99  LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN 131
           L  LN+ SN+ + V       LTSL  + L  N
Sbjct: 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L +  N  +  I  C      + VL+L +N    +IP  +  L +LQ LN+  N L 
Sbjct: 401 LLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

Query: 62  GQIPASFQNCTKLVMLDIGENEF 84
                 F   T L  + +  N +
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 3   RILKLGENHFSGEIPDCWMNWLD-LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           + L + +N  S +      +W   LL LN+ +N  T  I   L     ++ L+L  N + 
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKF 109
             IP        L  L++  N+   +VP  I  R +SL  + L +N +
Sbjct: 435 -SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 9e-12
 Identities = 43/312 (13%), Positives = 92/312 (29%), Gaps = 38/312 (12%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS-FQNCTKLVMLDIGENE 83
           + + L             +      L+ + + +N +   I A  F N  KL  + I +  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 84  FVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISN 143
            +  +         +L  L + +   + +            +LD+ DN    +I      
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE----- 145

Query: 144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTI--LKLMRLIDLSKN 198
                             +   G   E  +L L     + +  +     +L  L     N
Sbjct: 146 -----------------RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 199 KFSGEIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSIS 257
               E+P+++       V LD+S       +P+    LE++  +   +     ++P ++ 
Sbjct: 189 NLE-ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TLE 243

Query: 258 SLTFLSRLKLSNN-NLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAPAPHNESE 316
            L  L    L+   +         Q+    P              +    A     + +E
Sbjct: 244 KLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQ---EVDYMTQARGQRSSLAE 300

Query: 317 DDIDGNDDGDED 328
           D+      G + 
Sbjct: 301 DNESSYSRGFDM 312

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 34/229 (14%)

Query: 2   IRILKLGENHFSGEIP-DCWMNWLDLLVLNLGNNNFTGNIPIS-LGMLSSLQSLNLRKNS 59
           +  +++ +N     I  D + N   L  + +   N    I       L +LQ L +    
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 60  LSGQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM----ILNLRSNKFRGVLP 114
           +   +P     +  + V+LDI +N  +  +       F  L     IL L  N  + +  
Sbjct: 116 IK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS---FVGLSFESVILWLNKNGIQEIHN 171

Query: 115 NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALL 174
           +   G     +    +N+L           S  V  + S       PS            
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS------------ 219

Query: 175 VLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS 223
                      +  L +L   S      ++P+ +  L AL+   L+  S
Sbjct: 220 ---------YGLENLKKLRARSTYNLK-KLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 33/201 (16%)

Query: 96  FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-SNISSMVTANFSI 154
             + + L     K R +      G   L  ++++ N +   I   + SN+  +       
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI-MNLRA 213
             ++    ++            +         L  ++ + +S       +P    ++   
Sbjct: 89  ANNLL--YINPE--------AFQN--------LPNLQYLLISNTGIK-HLPDVHKIHSLQ 129

Query: 214 LVSLDLSCNSFTGRIP-NSIGALESIL-SIDFSANQLYGEIPQSISSLTFLSRLKLSNNN 271
            V LD+  N     I  NS   L      +  + N +  EI  S  + T L  L LS+NN
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188

Query: 272 LSGKIPLSTQLQSFDPSSFTG 292
                     L+      F G
Sbjct: 189 ---------NLEELPNDVFHG 200

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
           L  L +   + T +   +L  L+SL  L++  ++    I        K+  +D+  N  +
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135
            ++          L  LN++ +         +     L+ L      + G
Sbjct: 150 TDIMPLKT--LPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN 246
           L  +  + +     + +    +  L +L  LD+S ++    I   I  L  + SID S N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 247 QLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFD 286
               +I   + +L  L  L +  + +     +    +L    
Sbjct: 147 GAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 44/268 (16%), Positives = 73/268 (27%), Gaps = 96/268 (35%)

Query: 15  EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKN---SLSGQIPASFQNC 71
            IPD    +   L   LG ++      I+   ++SL  + L       L+G      +  
Sbjct: 16  NIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG-----IEYA 65

Query: 72  TKLVMLDIGEN-----EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVL 126
             +  L I          +           S+L  L +            L GLTSL +L
Sbjct: 66  HNIKDLTINNIHATNYNPISG--------LSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 127 DLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI 186
           D++ +    SI   I+                                            
Sbjct: 118 DISHSAHDDSILTKINT------------------------------------------- 134

Query: 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN 246
           L  +  IDLS N    +I   +  L  L SL++  +                   D+   
Sbjct: 135 LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH----------------DYRG- 176

Query: 247 QLYGEIPQSISSLTFLSRLKLSNNNLSG 274
                    I     L++L   +  + G
Sbjct: 177 ---------IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN 246
              ++ + ++    +    + I  L  L  L +     T     ++  L S+  +D S +
Sbjct: 65  AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 247 QLYGEIPQSISSLTFLSRLKLSNNNLSGKI-PLS--TQLQSFD 286
                I   I++L  ++ + LS N     I PL    +L+S +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLN 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 48/314 (15%), Positives = 94/314 (29%), Gaps = 41/314 (13%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             L    N  + ++         L  LN   N  T    I +   + L  L+   N    
Sbjct: 109 TYLNCDTNKLT-KLDVSQNP--LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT 162

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGI-RFSSLMILNLRSNKFRGVLPNQLCGLT 121
           ++       T+L  LD   N+      T + + +   L  LN  +N    +    L    
Sbjct: 163 KLD--VTPQTQLTTLDCSFNKI-----TELDVSQNKLLNRLNCDTNNITKL---DLNQNI 212

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV 181
            L  LD + N L+  I   ++ ++ +   + S         +      +   L      +
Sbjct: 213 QLTFLDCSSNKLT-EID--VTPLTQLTYFDCS---VNPLTELDVSTLSKLTTLHCIQTDL 266

Query: 182 EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI 241
               +    +LI             ++ +   L  LD      T      +     ++ +
Sbjct: 267 LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYL 323

Query: 242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLST------------QLQSFDPSS 289
             +  +L  E+   +S  T L  L   N ++     +              Q  +    +
Sbjct: 324 YLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKET 380

Query: 290 FTGNRLCGSPLPNN 303
            T N L  +  P+ 
Sbjct: 381 LTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 45/264 (17%), Positives = 88/264 (33%), Gaps = 47/264 (17%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
                           IS   L++L SL+   +S++  +    +  T L  L    N   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNI- 76

Query: 86  GNVPTWIGIR-FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
               T + +   ++L  L   SNK   +    +  LT L  L+   N L+  +   +S  
Sbjct: 77  ----TTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLD--VSQN 126

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204
             +                          L      +    +    +L +L  +      
Sbjct: 127 PLLTY------------------------LNCARNTLTEIDVSHNTQLTELDCHLNKKIT 162

Query: 205 PSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSR 264
             ++     L +LD S N  T      +   + +  ++   N +  ++   ++    L+ 
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216

Query: 265 LKLSNNNLSGKIPLS--TQLQSFD 286
           L  S+N L+ +I ++  TQL  FD
Sbjct: 217 LDCSSNKLT-EIDVTPLTQLTYFD 239

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 36/276 (13%), Positives = 91/276 (32%), Gaps = 29/276 (10%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L    N    ++         L  L+   N  T    + +     L  LN   N+++
Sbjct: 150 LTELDCHLNKKITKLDVTPQT--QLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT 204

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR-FSSLMILNLRSNKFRGVLPNQLCGL 120
            ++        +L  LD   N+      T I +   + L   +   N    +    +  L
Sbjct: 205 -KLD--LNQNIQLTFLDCSSNKL-----TEIDVTPLTQLTYFDCSVNPLTEL---DVSTL 253

Query: 121 TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA 180
           + L  L      L   I   +++ + ++         ++   V+    +   LL  +   
Sbjct: 254 SKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELDVTHNTQLY--LLDCQAAG 308

Query: 181 VEYNTILKLMRL--IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI 238
           +    + +  +L  + L+  + + E+   + +   L SL             S+G + ++
Sbjct: 309 ITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPAL 363

Query: 239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274
            +   +  Q      +++++ +    +     +  G
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 2e-11
 Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 54/267 (20%)

Query: 22  NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81
            + + +  NL   + T  +  +   L+S+  +    + +   +    Q    +  L +  
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74

Query: 82  NEFVGNVPTWIGI-RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC 140
           N     +     +    +L  L L  NK + +    L  L  L  L L  N +S      
Sbjct: 75  N----KLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-----D 123

Query: 141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI--------LKLMRL 192
           I+ +  +                         L  L    +  N I        L  +  
Sbjct: 124 INGLVHLP-----------------------QLESLY---LGNNKITDITVLSRLTKLDT 157

Query: 193 IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEI 252
           + L  N+ S +I   +  L  L +L LS N  +     ++  L+++  ++  + +   + 
Sbjct: 158 LSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKP 213

Query: 253 PQSISSLTFLSRLKLSNNNLSGKIPLS 279
               S+L   + +K ++ +L     +S
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 5e-10
 Identities = 48/269 (17%), Positives = 81/269 (30%), Gaps = 68/269 (25%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN--- 82
           +  L L  N  T +I   L  L +L  L L +N +   +  S ++  KL  L +  N   
Sbjct: 67  VTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS 122

Query: 83  --EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC 140
               + +           L  L L +NK   +    L  LT L  L L DN +S      
Sbjct: 123 DINGLVH--------LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD----- 167

Query: 141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKF 200
           I  ++                                         L  ++ + LSKN  
Sbjct: 168 IVPLAG----------------------------------------LTKLQNLYLSKNHI 187

Query: 201 SGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT 260
           S ++   +  L+ L  L+L       +  N    L    ++  +   L    P+ IS   
Sbjct: 188 S-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDG 243

Query: 261 FLSRLKLSNNNLSGKIPLSTQLQSFDPSS 289
              +  +  +       +S          
Sbjct: 244 DYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 60/239 (25%)

Query: 50  LQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKF 109
           +         +    P       + +  ++ +   V +  T      +S+  +   ++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKS-VTDAVTQNE--LNSIDQIIANNSDI 55

Query: 110 RGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYV 169
           + V    +  L ++  L L  N L+      I  +++                       
Sbjct: 56  KSVQG--IQYLPNVTKLFLNGNKLT-----DIKPLTN----------------------- 85

Query: 170 EDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP 229
                            LK +  + L +NK   ++ S + +L+ L SL L  N  +  I 
Sbjct: 86  -----------------LKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DIN 125

Query: 230 NSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFD 286
             +  L  + S+    N++       +S LT L  L L +N +S  +PL+  T+LQ+  
Sbjct: 126 G-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 5/137 (3%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
            IL L EN          M +  L  LNL     T  + +    L  L +L+L  N L  
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQLQ- 90

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS 122
            +P   Q    L +LD+  N    ++P         L  L L+ N+ + + P  L     
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 123 LHVLDLADNHLSGSIPK 139
           L  L LA+N+L+  +P 
Sbjct: 150 LEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 5/114 (4%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           D  +L+L  N        +L   + L  LNL +  L+ ++         L  LD+  N+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL 89

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
             ++P  +G    +L +L++  N+   +    L GL  L  L L  N L  ++P
Sbjct: 90  Q-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLP 140

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 49/244 (20%), Positives = 84/244 (34%), Gaps = 55/244 (22%)

Query: 29  LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNV 88
           +N    N T  +P    +      L+L +N L     A+    T+L  L++   E +  +
Sbjct: 15  VNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKL 70

Query: 89  PTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMV 148
                +    L  L+L  N+ +  LP     L +L VLD++ N L+ S+P          
Sbjct: 71  QVDGTL--PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP---------- 116

Query: 149 TANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI 208
                            G                    L  ++ + L  N+    +P  +
Sbjct: 117 ------------LGALRG--------------------LGELQELYLKGNELK-TLPPGL 143

Query: 209 -MNLRALVSLDLSCNSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSISSLTFLSRLK 266
                 L  L L+ N+ T  +P  +   LE++ ++    N LY  IP+       L    
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

Query: 267 LSNN 270
           L  N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 40/207 (19%), Positives = 60/207 (28%), Gaps = 63/207 (30%)

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           +P    +      IL+L  N         L   T L  L+L    L+  +          
Sbjct: 25  LPP--DL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--------- 71

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSE 207
                                V+  L VL                +DLS N+    +P  
Sbjct: 72  ---------------------VDGTLPVLG--------------TLDLSHNQLQ-SLPLL 95

Query: 208 IMNLRALVSLDLSCNSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSI-SSLTFLSRL 265
              L AL  LD+S N  T  +P      L  +  +    N+L   +P  + +    L +L
Sbjct: 96  GQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKL 153

Query: 266 KLSNNNLSGKIPLSTQLQSFDPSSFTG 292
            L+NN           L         G
Sbjct: 154 SLANN----------NLTELPAGLLNG 170

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 47/264 (17%), Positives = 78/264 (29%), Gaps = 74/264 (28%)

Query: 47  LSSLQSLNLRKNSL----SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL 102
           ++S   +N  K +L       +P           L + EN           + ++ L  L
Sbjct: 9   VASHLEVNCDKRNLTALPPD-LPKDTTI------LHLSENLL-YTFSLATLMPYTRLTQL 60

Query: 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPS 162
           NL   +   +  +    L  L  LDL+ N L  S+P     +                  
Sbjct: 61  NLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTLP----------------- 100

Query: 163 VSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM-NLRALVSLDLSC 221
                                     L  L D+S N+ +  +P   +  L  L  L L  
Sbjct: 101 -------------------------ALTVL-DVSFNRLT-SLPLGALRGLGELQELYLKG 133

Query: 222 NSFTGRIPNSI-GALESILSIDFSANQLYGEIPQSI-SSLTFLSRLKLSNNNLSGKIPLS 279
           N     +P  +      +  +  + N L  E+P  + + L  L  L L  N         
Sbjct: 134 NELK-TLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQEN--------- 182

Query: 280 TQLQSFDPSSFTGNRLCGSPLPNN 303
             L +     F  + L  + L  N
Sbjct: 183 -SLYTIPKGFFGSHLLPFAFLHGN 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 28  VLNLGNNNFTGNIP--ISLGMLSSLQSLNLRKNSLSGQIPA-SFQNCTKLVMLDIGENEF 84
           +L+L +NN +  +    +   L++L SL L  N L+  I + +F     L  LD+  N  
Sbjct: 43  LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH- 99

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
           +  +  ++     +L +L L +N    V  N    +  L  L L+ N +S   P
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPA-SFQNCTKLVMLDIGENEF 84
           L  L+L +N+           L +L+ L L  N +   +   +F++  +L  L + +N+ 
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148

Query: 85  VGNVPTWI---GIRFSSLMILNLRSNKFRGVLPNQLCGLTSL--HVLDLADNHL 133
               P  +   G +   LM+L+L SNK + +    L  L +   + L L +N L
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 39/248 (15%), Positives = 79/248 (31%), Gaps = 33/248 (13%)

Query: 29  LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPA-SFQNCTKLVMLDIGENEFVGN 87
             +   +    IP    +  S Q+L L +  L   IP+ +F N   +  + +  +  +  
Sbjct: 16  FRVTCKDIQ-RIP---SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 88  VPTWIGIRFSSLMILNLRSNKF-RGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISS 146
           + +      S +  + +R+ +    + P+ L  L  L  L + +  L    P      S+
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYST 129

Query: 147 MVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPS 206
            +     I  +    S+             +G       +      + L  N F+  +  
Sbjct: 130 DIFFILEITDNPYMTSIPVN--------AFQG-------LCNETLTLKLYNNGFT-SVQG 173

Query: 207 EIMNLRALVSLDLSCNSFTGRIPNSI--GALESILSIDFSANQLYGEIPQSISSLTF--L 262
              N   L ++ L+ N +   I      G       +D S   +      ++ S     L
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-----TALPSKGLEHL 228

Query: 263 SRLKLSNN 270
             L   N 
Sbjct: 229 KELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 26  LLVLNLGNNNFTGNIPIS-LGMLSSLQSLNLRKNSLSGQIPA--SFQNCTKLVMLDIGEN 82
           +  + + N      I    L  L  L+ L +    L    P      +     +L+I +N
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN 140

Query: 83  EFVGNVPTWIGIRFSSL----MILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
            ++ ++P      F  L    + L L +N F   +       T L  + L  N     I 
Sbjct: 141 PYMTSIPVNA---FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 139 K 139
           K
Sbjct: 197 K 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 3   RILKLGENHFSGEIPDC--WMNWLDLLVLNLGNNNFTGNIPISL--GMLSSLQSLNLRKN 58
           + L +         PD     +     +L + +N +  +IP++   G+ +   +L L  N
Sbjct: 108 KFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 59  SLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWI--GIRFSSLMILNLRSNKFRGVLPNQ 116
             +  +     N TKL  + + +N+++  +      G+  S   +L++       +    
Sbjct: 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY-SGPSLLDVSQTSVTALPSKG 224

Query: 117 LCGLTSLHVLDL 128
           L  L  L   + 
Sbjct: 225 LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/182 (12%), Positives = 49/182 (26%), Gaps = 48/182 (26%)

Query: 97  SSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGT 156
            S   L L     R +  +    L ++  + ++ +         +  + S    N     
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-------TLQQLESHSFYN----- 78

Query: 157 DVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI-MNLRALV 215
                                         L  +  I++   +    I  +    L  L 
Sbjct: 79  ------------------------------LSKVTHIEIRNTRNLTYIDPDALKELPLLK 108

Query: 216 SLDLSCNSFTGRIPN--SIGALESILSIDFSANQLYGEIP-QSISSLTFLSR-LKLSNNN 271
            L +         P+   + + +    ++ + N     IP  +   L   +  LKL NN 
Sbjct: 109 FLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 272 LS 273
            +
Sbjct: 168 FT 169

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 42/269 (15%), Positives = 92/269 (34%), Gaps = 72/269 (26%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN-- 82
           + + +  G +N T    ++   L  + +L+     ++  I    Q    L+ L++ +N  
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI 75

Query: 83  ---EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139
                + N         + +  L L  N  + V    + GL S+  LDL    ++     
Sbjct: 76  TDLAPLKN--------LTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD---- 121

Query: 140 CISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK 199
            ++ ++                                         L  ++++ L  N+
Sbjct: 122 -VTPLAG----------------------------------------LSNLQVLYLDLNQ 140

Query: 200 FSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL 259
            +  I S +  L  L  L +     +  +   +  L  + ++    N++  +I   ++SL
Sbjct: 141 IT-NI-SPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI-SDIS-PLASL 194

Query: 260 TFLSRLKLSNNNLSGKIPLS--TQLQSFD 286
             L  + L NN +S   PL+  + L    
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVT 223

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 66/259 (25%)

Query: 35  NFTGNIPIS----LGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPT 90
           + T    I+       L++   +   K++++  +     +   +  L          V T
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----GVTT 55

Query: 91  WIGIR-FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVT 149
             G++  ++L+ L L+ N+   + P  L  LT +  L+L+ N L       +S I+    
Sbjct: 56  IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-----VSAIAG--- 105

Query: 150 ANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM 209
                                                L+ ++ +DL+  + +   P  + 
Sbjct: 106 -------------------------------------LQSIKTLDLTSTQITDVTP--LA 126

Query: 210 NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN 269
            L  L  L L  N  T  I   +  L ++  +     Q+       +++L+ L+ LK  +
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADD 182

Query: 270 NNLSGKIPLS--TQLQSFD 286
           N +S   PL+    L    
Sbjct: 183 NKISDISPLASLPNLIEVH 201

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 12/173 (6%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           I+ L L     +   P   ++  +L VL L  N  T NI   L  L++LQ L++    +S
Sbjct: 109 IKTLDLTSTQITDVTPLAGLS--NLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS 164

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
              P    N +KL  L   +N+ + ++         +L+ ++L++N+   V P  L   +
Sbjct: 165 DLTP--LANLSKLTTLKADDNK-ISDISPLAS--LPNLIEVHLKNNQISDVSP--LANTS 217

Query: 122 SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVS-TGKYVEDAL 173
           +L ++ L +  ++       +N+          G  +   ++S  G Y    L
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 52/249 (20%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 39  NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS 98
           N+P       S ++L+L  N L      SF +  +L +LD+   E +  +        S 
Sbjct: 25  NLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSH 77

Query: 99  LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV 158
           L  L L  N  + +      GL+SL  L   + +L+ S+                    +
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFP----------IGHLKTL 126

Query: 159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKL-----------MRLIDLSKNKFSGEIPSE 207
           +              L +      +N I              +  +DLS NK    I   
Sbjct: 127 KE-------------LNV-----AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167

Query: 208 IM-NLRAL----VSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSI-SSLTF 261
            +  L  +    +SLDLS N     I         +  +    NQL   +P  I   LT 
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTS 225

Query: 262 LSRLKLSNN 270
           L ++ L  N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 26  LLVLNLGNNNFTGNIPISL-GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
           L VL+L        I       LS L +L L  N +      +F   + L  L   E   
Sbjct: 54  LQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIP 138
             ++  +      +L  LN+  N  +   LP     LT+L  LDL+ N +  SI 
Sbjct: 113 A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIY 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 17/116 (14%)

Query: 26  LLVLNLGNNNFTGNIPISLGM---LSSLQSLNLRKNSLSGQIPA-SFQNCTKLVM----L 77
           L  LN+ +N    +          L++L+ L+L  N +   I     +   ++ +    L
Sbjct: 126 LKELNVAHNLIQ-SFK-LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSL 182

Query: 78  DIGENEFVGNVPTWIGIRFS--SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN 131
           D+  N  +  +       F    L  L L +N+ + V       LTSL  + L  N
Sbjct: 183 DLSLNP-MNFIQPGA---FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 43/228 (18%), Positives = 76/228 (33%), Gaps = 51/228 (22%)

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           +P    +   S   L+L  N  R +          L VLDL+   +  +I          
Sbjct: 22  IPD--NL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE--------- 68

Query: 148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKG---KAVEYNTILKLMRL--IDLSKNKFSG 202
                  G       +ST        L+L G   +++       L  L  +   +   + 
Sbjct: 69  ------DGAYQSLSHLST--------LILTGNPIQSLALGAFSGLSSLQKLVAVETNLA- 113

Query: 203 EIPSEI-MNLRALVSLDLSCNSFTGRIPNSIGA---LESILSIDFSANQLYGEIPQSISS 258
            + +    +L+ L  L+++ N               L ++  +D S+N++     QSI  
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQ-SFK-LPEYFSNLTNLEHLDLSSNKI-----QSIYC 166

Query: 259 LTF--LSRLKLSNNNLSGKIPLST-QLQSFDPSSFTGNRLCGSPLPNN 303
                L ++ L N +L     LS   +    P +F   RL    L  N
Sbjct: 167 TDLRVLHQMPLLNLSLD----LSLNPMNFIQPGAFKEIRLKELALDTN 210

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 44/274 (16%), Positives = 86/274 (31%), Gaps = 13/274 (4%)

Query: 19  CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLD 78
             +   DL   +L +        +      S +   L K+              +L   +
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCE 355

Query: 79  IGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
           +   +    + + +      L  L   +      +   +  L  L        + S    
Sbjct: 356 LSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 139 KCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDL 195
                 + +   +      +   SV   +Y +  +L L  K    + +   L L+  +DL
Sbjct: 414 VDPMRAAYL---DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDL 470

Query: 196 SKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG-EIPQ 254
           S N+    +P  +  LR L  L  S N+    +   +  L  +  +    N+L      Q
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQ 527

Query: 255 SISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPS 288
            + S   L  L L  N+L  +  +  +L    PS
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLY 249
           +R++ L+    +  +   +  L  +  LDLS N     +P ++ AL  +  +  S N L 
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL- 498

Query: 250 GEIPQSISSLTFLSRLKLSNN---NLSGKIPLS--TQLQSFDPSSFTGNRLCGSP 299
            E    +++L  L  L L NN     +   PL    +L   +     GN LC   
Sbjct: 499 -ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN---LQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 30/126 (23%)

Query: 9   ENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASF 68
            + F  E     M + D+ VL+L + + T  +   L  L  +  L+L  N L   +P + 
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL 482

Query: 69  QNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDL 128
                L +L   +N                  + N+            +  L  L  L L
Sbjct: 483 AALRCLEVLQASDNA-----------------LENVDG----------VANLPRLQELLL 515

Query: 129 ADNHLS 134
            +N L 
Sbjct: 516 CNNRLQ 521

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 47/289 (16%), Positives = 89/289 (30%), Gaps = 47/289 (16%)

Query: 29  LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL-SGQIPASFQNCTKLVMLDIGENE---- 83
           L++ +N       IS   ++SL+ L+L  N      +   F N TKL  L +   +    
Sbjct: 105 LDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 84  -FVGNVPTWIGIRFSSLMILNLRSNKFRGV------------LPNQL------CGLTSLH 124
             +      +      L+  +++  +   +             PN L        + +L 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN 184
            L L++  L+    + +    S +T   ++         +T K           + VEY 
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 185 TI--------------------LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSF 224
            I                    LK + +  +    F     +       +    LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 225 TGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
                    +  S   ++F+ N     + Q  S+L  L  L L  N L 
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 39/281 (13%), Positives = 92/281 (32%), Gaps = 30/281 (10%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGML-----SSLQSLNLR 56
           +  +KL + +    +           +LN+   +       S+ +        ++ LN+ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 57  KNSLSGQIPASFQNCTKLVMLDIGENEFVGNV----PTWIGIRFSSLMILNLRSNKFRGV 112
             +++ +I       ++  +  +        V       +   F+ + I  L  +    +
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 113 LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDA 172
                   +S   L+   N  + S+ +  S +  + T            +      +   
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ---RNGLKNFFKVALMTKN 401

Query: 173 LLVLKGKAVEYNTILKLMRLIDLSKNKF-SGEIPSEIMNLRALVSLDLSCNSFTGRIPNS 231
           +  L                +D+S N   S           +++ L+LS N  TG +   
Sbjct: 402 MSSL--------------ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 232 IGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNL 272
           +     +L  D   N++   IP+ ++ L  L  L +++N L
Sbjct: 448 LPPKVKVL--DLHNNRI-MSIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 51/234 (21%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           + I  +    F       +  + ++ +  L  ++      +     SS   LN  +N  +
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGI--RFSSLMILNLRSNKFRGVLPNQLCG 119
             +        +L  L +  N    N      +    SSL  L++  N       ++ C 
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

Query: 120 L-TSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG 178
              S+ VL+L+ N L+GS+ +C+                                     
Sbjct: 426 WAESILVLNLSSNMLTGSVFRCLPP----------------------------------- 450

Query: 179 KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSI 232
                    K+  L DL  N+    IP ++ +L+AL  L+++ N     +P+ +
Sbjct: 451 ---------KVKVL-DLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 37/260 (14%), Positives = 78/260 (30%), Gaps = 20/260 (7%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS-FQNCTKLVMLDIGENE 83
               L+L  N+ +      +  LS L+ L L  N +   +    F     L  LD+  N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 84  FVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCIS 142
              N+        +SL  L+L  N F  + +  +   LT L  L L+           ++
Sbjct: 112 LQ-NISC---CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSG 202
           ++         I  D+    +  G+     +       + ++        +++S N    
Sbjct: 168 HLHLS-----CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN---- 218

Query: 203 EIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL--T 260
                 + L  +   D +C      +         +          +    +        
Sbjct: 219 --ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 261 FLSRLKLSNNNLSGKIPLST 280
            +  L + N  ++ +I    
Sbjct: 277 PVEYLNIYNLTITERIDREE 296

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           I +L L  N  +G +  C      + VL+L NN    +IP  +  L +LQ LN+  N L 
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 62  GQIPASFQNCTKLVMLDIGENEF 84
                 F   T L  + + +N +
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 25/154 (16%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSL- 60
              L   +N F+  +         L  L L  N    N      M  ++ SL     SL 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLN 413

Query: 61  ---SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGI--------------------RFS 97
              S     +      +++L++  N   G+V   +                         
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQ 473

Query: 98  SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN 131
           +L  LN+ SN+ + V       LTSL  + L DN
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 58/269 (21%)

Query: 22  NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE 81
            + + +  NL   + T  +  +   L+S+  +    + +   +    Q    +  L +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 82  NEFVGNVPTWIGIR-FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC 140
           N     +     +    +L  L L  NK + +    L  L  L  L L  N +S      
Sbjct: 78  N----KLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-----D 126

Query: 141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI--------LKLMRL 192
           I+ +  +                         L  L    +  N I        L  +  
Sbjct: 127 INGLVHLP-----------------------QLESLY---LGNNKITDITVLSRLTKLDT 160

Query: 193 IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPN--SIGALESILSIDFSANQLYG 250
           + L  N+ S +I   +  L  L +L LS N     I +  ++  L+++  ++  + +   
Sbjct: 161 LSLEDNQIS-DI-VPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLN 214

Query: 251 EIPQSISSLTFLSRLKLSNNNLSGKIPLS 279
           +     S+L   + +K ++ +L     +S
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 52/286 (18%), Positives = 95/286 (33%), Gaps = 69/286 (24%)

Query: 31  LGNNNFTGNIPIS----LGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG 86
           LG+   T   PI         +     NL+K S++  +         +  +    +    
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS---- 56

Query: 87  NVPTWIGIR-FSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
           ++ +  GI+   ++  L L  NK   + P  L  L +L  L L +N +       +S++ 
Sbjct: 57  DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-----DLSSLK 109

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205
                                                    LK ++ + L  N  S +I 
Sbjct: 110 D----------------------------------------LKKLKSLSLEHNGIS-DIN 128

Query: 206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRL 265
             +++L  L SL L  N  T  I   +  L  + ++    NQ+       ++ LT L  L
Sbjct: 129 G-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNL 183

Query: 266 KLSNNNLSGKIPLS--TQLQSFDPSSFTGNRLCGSPLPNNCFVAAP 309
            LS N++S    L+    L   +            P+ +   +  P
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLE---LFSQECLNKPINHQSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 40/186 (21%), Positives = 63/186 (33%), Gaps = 21/186 (11%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN--- 82
           L  L+L +N  + +I   L  L  L+SL L  N ++  I       TKL  L + +N   
Sbjct: 114 LKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS 169

Query: 83  --EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC 140
               +           + L  L L  N    +    L GL +L VL+L            
Sbjct: 170 DIVPLAG--------LTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH 219

Query: 141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK- 199
            SN+    T   + G+ V    +S     E   +                + + + K K 
Sbjct: 220 QSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 279

Query: 200 -FSGEI 204
            F G +
Sbjct: 280 RFHGRV 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 47/254 (18%), Positives = 87/254 (34%), Gaps = 41/254 (16%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
           +  L L  N  T +I   L  L +L  L L +N +   +  S ++  KL  L +  N   
Sbjct: 70  VTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHN--- 122

Query: 86  GNVPTWIGI-RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
             +    G+     L  L L +NK   +    L  LT L  L L DN +S      I  +
Sbjct: 123 -GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-----IVPL 174

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204
           + +        T +Q   +S    + D         +     LK + +++L   +   + 
Sbjct: 175 AGL--------TKLQNLYLSKNH-ISD---------LRALAGLKNLDVLELFSQECLNKP 216

Query: 205 PSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSR 264
            +   NL    ++  +  S       S        ++ +   +   E+     S  F   
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV-----SFIFYQP 271

Query: 265 LKLSNNNL--SGKI 276
           + +        G++
Sbjct: 272 VTIGKAKARFHGRV 285

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 28  VLNLGNNNFTGNIPISL-GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG 86
            L L NN FT      +   L  L+ +N   N ++     +F+  + +  + +  N    
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 87  NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139
           NV   +     SL  L LRSN+   V  +   GL+S+ +L L DN ++ ++  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 33/131 (25%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 3   RILKLGENHFSGEIPDCWMNWL-DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
             L+L  N F+          L  L  +N  NN  T     +    S +  + L  N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 62  GQIPAS-FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGL 120
             +    F+    L  L +  N     V     I  SS+ +L+L  N+   V P     L
Sbjct: 95  N-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 121 TSLHVLDLADN 131
            SL  L+L  N
Sbjct: 153 HSLSTLNLLAN 163

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 39/277 (14%), Positives = 86/277 (31%), Gaps = 46/277 (16%)

Query: 24  LDLLVLNLGNNNFTG----NIPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLV 75
             +   +L  +  T     ++   L    S++ + L  N++  +    +  +  +   L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 76  MLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135
           + +  +         + G R    +   LR       L   L     LH + L+DN    
Sbjct: 64  IAEFSDI--------FTG-RVKDEIPEALRL------LLQALLKCPKLHTVRLSDNAFG- 107

Query: 136 SIPKCISNISSMVTANFSIGT-DVQYPSVST--GKYVEDALLVL-KGKAVEYNTILKLMR 191
             P     +   ++ +  +    +    +    G  +  AL  L   K  +    L   R
Sbjct: 108 --PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL---R 162

Query: 192 LIDLSKNKFSGE----IPSEIMNLRALVSLDLSCNSFTGR-----IPNSIGALESILSID 242
            I   +N+              + R L ++ +  N          +   +   + +  +D
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222

Query: 243 FSANQLYGE----IPQSISSLTFLSRLKLSNNNLSGK 275
              N         +  ++ S   L  L L++  LS +
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 28  VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGN 87
            + L  N      P +      L+ ++L  N +S   P +FQ    L  L +  N+    
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139
           +P  +     SL +L L +NK   +  +    L +L++L L DN L  +I K
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 39  NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS 98
           N+P       ++  + L +N++    P +F    KL  +D+  N+ +  +         S
Sbjct: 29  NLP------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRS 81

Query: 99  LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139
           L  L L  NK   +  +   GL SL +L L  N ++  +  
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 3   RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG 62
             ++L +N      P  +  +  L  ++L NN  +   P +   L SL SL L  N ++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 63  QIPAS-FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
           ++P S F+    L +L +  N+ +  +         +L +L+L  NK + +       L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 122 SLHVLDLADN 131
           ++  + LA N
Sbjct: 153 AIQTMHLAQN 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 26  LLVLNLGNNNFTGNIPISL-GMLSSLQSLNLRKNSLSGQIPAS-FQNCTKLVMLDIGENE 83
           L  L + +N     +PI +   L +L  L L +N L   +P   F + TKL  L +G NE
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 84  FVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
              ++P  +  + +SL  L L +N+ + V       LT L  L L +N L   +P
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 52/233 (22%), Positives = 78/233 (33%), Gaps = 52/233 (22%)

Query: 39  NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS 98
           NIP      +  + L+L+ N LS     +F   TKL +L + +N+    +P  I     +
Sbjct: 34  NIP------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 99  LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV 158
           L  L +  NK + +       L +L  L L  N L  S+P                    
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLP-------------------- 125

Query: 159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM-NLRALVSL 217
             P V          L             KL  L  L  N+    +P  +   L +L  L
Sbjct: 126 --PRVFDS-------LT------------KLTYL-SLGYNELQ-SLPKGVFDKLTSLKEL 162

Query: 218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNN 270
            L  N        +   L  + ++    NQL      +  SL  L  L+L  N
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 5/109 (4%)

Query: 25  DLLVLNLGNNNFTGNIPISL-GMLSSLQSLNLRKNSLSGQIPA-SFQNCTKLVMLDIGEN 82
           +L  L L  N    ++P  +   L+ L  L+L  N L   +P   F   T L  L +  N
Sbjct: 110 NLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167

Query: 83  EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN 131
           + +  VP     + + L  L L +N+ + V       L  L +L L +N
Sbjct: 168 Q-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 24  LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN- 82
            + + L+         +  +L  L + + L L  N++  +I +S      L +L +G N 
Sbjct: 25  AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL 81

Query: 83  -EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
            + + N+         +L  L +  N+   +    +  L +L VL +++N ++
Sbjct: 82  IKKIENLDA----VADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKIT 128

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 46/301 (15%)

Query: 21  MNWLDLLVLNLGNNNFTGN-IPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLV 75
           M+ LD+  L++     +       L +L   Q + L    L+      I ++ +    L 
Sbjct: 1   MS-LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 76  MLDIGENEFVGNVPTWIGIRFSS----LMILNLRSNKFR----GVLPNQLCGLTSLHVLD 127
            L++  NE        +     +    +  L+L++        GVL + L  L +L  L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 128 LADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTIL 187
           L+DN L  +    +  +   +         +Q    S      + L       +      
Sbjct: 120 LSDNLLGDA---GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL----ASVLRAKPDF 172

Query: 188 KLMRLIDLSKNKFSGEIPSEIM-----NLRALVSLDLSCNSFTGR----IPNSIGALESI 238
              + + +S N  +      +      +   L +L L     T      +   + +  S+
Sbjct: 173 ---KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 239 LSIDFSANQLYGEIPQSIS-----SLTFLSRLKLSNNNLSGK--------IPLSTQLQSF 285
             +   +N+L       +        + L  L +    ++ K        +     L+  
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 286 D 286
            
Sbjct: 290 S 290

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 41/279 (14%), Positives = 89/279 (31%), Gaps = 41/279 (14%)

Query: 26  LLVLNLGNNNFT--GNIPISLGMLS---SLQSLNLRKNSLSGQ----IPASFQNCTKLVM 76
           L  LNL +N     G   +  G+ +    +Q L+L+   L+G     + ++ +    L  
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 77  LDIGENEF----VGNVPTWIGIRFSSLMILNLRSNKFR----GVLPNQLCGLTSLHVLDL 128
           L + +N      +  +   +      L  L L            L + L        L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 129 ADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILK 188
           ++N ++ +  + +                ++   + +     D    L    V     L+
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQ------LEALKLESCGVTSDNCRDL-CGIVASKASLR 230

Query: 189 LMRLIDLSKNKFSGE-----IPSEIMNLRALVSLDLSCNSFTGR----IPNSIGALESIL 239
               + L  NK          P  +     L +L +     T +    +   + A ES+ 
Sbjct: 231 ---ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 240 SIDFSANQLYGEIPQSISSL-----TFLSRLKLSNNNLS 273
            +  + N+L  E  + +          L  L + + + +
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 46/276 (16%), Positives = 81/276 (29%), Gaps = 64/276 (23%)

Query: 26  LLVLNLGNNNF--TGNIPISLGMLSS---LQSLNLRKNSLSGQ----IPASFQNCTKLVM 76
              L + NN+    G   +  G+  S   L++L L    ++      +     +   L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 77  LDIGENEFVGNVPTWIGIRF---------SSLMILNLRSNKFRGV----LPNQLCGLTSL 123
           L +G N+        +G+           S L  L +            L   L    SL
Sbjct: 232 LALGSNKL-----GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 124 HVLDLADNHLSGSIPKCISNISSMVTANFSIGT-DVQYPSVSTGKYVEDALLVLKGKAVE 182
             L LA N L     + +    +++     + +  V+  S +                + 
Sbjct: 287 KELSLAGNELGDEGARLLCE--TLLEPGCQLESLWVKSCSFT-----AACCSHF-SSVLA 338

Query: 183 YNTILKLMRLIDLSKNKFSGEIPSEI-----MNLRALVSLDLSCNSFTGRIPNSIGALES 237
            N  L     + +S N+       E+          L  L L+    +    +S  +L +
Sbjct: 339 QNRFL---LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS---DSSCSSLAA 392

Query: 238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
            L                  +   L  L LSNN L 
Sbjct: 393 TL-----------------LANHSLRELDLSNNCLG 411

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
           +   N  N+N   ++   +   ++L+ L+L  N +S  +    ++ TKL  L +  N   
Sbjct: 43  VQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRN--- 95

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
             +    GI  + L  L L +N+ R      L  L +L +L + +N L 
Sbjct: 96  -RLKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 41/245 (16%), Positives = 83/245 (33%), Gaps = 53/245 (21%)

Query: 44  LGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR-FSSLMIL 102
              L++    NL K S++  +    +  + +   +   +    N+ +  G++ F++L  L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS----NIQSLAGMQFFTNLKEL 68

Query: 103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPS 162
           +L  N+   + P  L  LT L  L +  N         + N++ +               
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNR--------LKNLNGI--------------- 103

Query: 163 VSTGKYVEDALLVLKGKAVEYNTI--------LKLMRLIDLSKNKFSGEIPSEIMNLRAL 214
                        L    ++ N +        LK + ++ +  NK    I   +  L  L
Sbjct: 104 ---------PSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKL 152

Query: 215 VSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274
             LDL  N  T      +  L+ +  ID +  +   E  +    L   + +K  +     
Sbjct: 153 EVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210

Query: 275 KIPLS 279
              +S
Sbjct: 211 PYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 20/144 (13%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN--- 82
           L  L++  N       ++    + L  L L  N L      S  +   L +L I  N   
Sbjct: 87  LEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK 141

Query: 83  --EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC 140
               +G +          L +L+L  N+        L  L  ++ +DL          K 
Sbjct: 142 SIVMLGFLS--------KLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKY 191

Query: 141 ISNISSMVTANFSIGTDVQYPSVS 164
              +    T     G  +    +S
Sbjct: 192 QPELYITNTVKDPDGRWISPYYIS 215

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 28  VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF--V 85
           ++ L                   + L+LR   +   I        +   +D  +NE   +
Sbjct: 1   MVKLTAELIE-QAA-QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL 57

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
              P         L  L + +N+   +       L  L  L L +N L 
Sbjct: 58  DGFP-----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 29  LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS-FQNCTKLVMLDIGENEFVGN 87
           L+L +         +   L+ L  LNL  N L   + A  F + T+L  L +  N+   +
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
           +P  +    + L  L L  N+ + +       LT L  L L  N L  SIP
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 4/136 (2%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISL-GMLSSLQSLNLRKNSLSGQ 63
           L L     +      +     L  LNL  N     +   +   L+ L +L L  N L+  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASL 98

Query: 64  IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL 123
               F + T+L  L +G N+    +P+ +  R + L  L L +N+ + +       LT+L
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 124 HVLDLADNHLSGSIPK 139
             L L+ N L  S+P 
Sbjct: 158 QTLSLSTNQLQ-SVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 39  NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS 98
            IP      +  + L+L+   L+    A+F+  TKL  L++  N+    +   +    + 
Sbjct: 32  GIP------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 99  LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP 138
           L  L L +N+   +       LT L  L L  N L  S+P
Sbjct: 85  LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLP 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 39  NIPISLGMLSSLQSLNLRKNSLSGQIPA-SFQNCTKLVMLDIGENEFVGNVPTWIGIRFS 97
           +    L    +L  L +        +     +   +L  L I ++     V         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 98  SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHL 133
            L  LNL  N    +    + GL SL  L L+ N L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 55  LRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP 114
            R  +L             L  L I   + + ++          L  L +  +  R V P
Sbjct: 16  TRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 115 NQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
           +       L  L+L+ N L     K +  +S
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 203 EIPSEIMNLRALVSLDLSCNSFTGRIPN-SIGALESILSIDFSANQLYGEIPQSISSLTF 261
           +    +     L  L +        +    +  L  + ++    + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 262 LSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNC 304
           LSRL LS N L      S   ++    S     L G+PL  +C
Sbjct: 82  LSRLNLSFNALE-----SLSWKTVQGLSLQELVLSGNPLHCSC 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 39  NIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS 98
            IP        +  L L  N  +  +P    N   L ++D+  N  +  +        + 
Sbjct: 28  GIP------RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQ 79

Query: 99  LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK 139
           L+ L L  N+ R + P    GL SL +L L  N +S  +P+
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 38/144 (26%)

Query: 25  DLLVLNLGNNNFTGNIPISLGM---LSSLQSLNLRKNSLSGQIPAS-FQNCTKLVMLDIG 80
           ++  L LG N         +     L++L  L L  N L   +P   F   T L  L + 
Sbjct: 64  NVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLV 117

Query: 81  ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-----------------NQLCG---- 119
           EN+   ++P  +  + ++L  LNL  N+ +  LP                 NQL      
Sbjct: 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEG 175

Query: 120 ----LTSLHVLDLADNHLSGSIPK 139
               LT L  L L  N L  S+P 
Sbjct: 176 VFDKLTQLKDLRLYQNQLK-SVPD 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 65/289 (22%)

Query: 33  NNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLV---MLDIGENEFVGNVP 89
           +  +  N   +   +S LQ     + +L    PA       ++   +L  G+        
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-----VLIDGVLGSGK-------- 163

Query: 90  TWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVT 149
                  + + +    S K +  +  +      +  L+L + +   ++ + +  +   + 
Sbjct: 164 -------TWVALDVCLSYKVQCKMDFK------IFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 150 ANFSIGTD----VQYPSVSTGKYV---------EDALLVLKGKAVEYNTILKLM----RL 192
            N++  +D    ++    S    +         E+ LLVL    V+            ++
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKI 268

Query: 193 IDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSA--NQLYG 250
           +  ++ K               +SLD    + T         L   L         ++  
Sbjct: 269 LLTTRFK--QVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLT 324

Query: 251 EIPQSISSL-----TFLSR----LKLSNNNLSGKIPLSTQLQSFDPSSF 290
             P+ +S +       L+       ++ + L+  I  S  L   +P+ +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEY 371

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 47  LSSLQSLNLRKNSLS-GQIPASFQNCTKLVMLDIGENEF--VGNVPTWIGIRFSSLMILN 103
            S ++ L L  +  + G++        +L  L         + N+P     + + L  L 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP-----KLNKLKKLE 70

Query: 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
           L  N+  G L        +L  L+L+ N + 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 47  LSSLQSLNLRKNSLS-GQIPASFQNCTKLVMLDIGENEF--VGNVPTWIGIRFSSLMILN 103
            ++++ L L     + G+I         L  L +       V N+P     +   L  L 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKLE 77

Query: 104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLS 134
           L  N+  G L      L +L  L+L+ N L 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 29/221 (13%), Positives = 64/221 (28%), Gaps = 40/221 (18%)

Query: 63  QIPASFQNCTKLVMLDIGENEFVGNVPTWIGI-----RFSSLMILNLRSNKFRGVLPNQL 117
            I  + +       L  G+ +F     +WI          ++ +LN    K    L    
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK 189

Query: 118 CGLTSLHVLDLADNHLSGSIPKCI--SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLV 175
               +L  L++    L  S+ + I  S++ ++      +G +           +     +
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD----MNVFRPL 245

Query: 176 LKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMN---LRALVSLDLSCNSFTGRIPNSI 232
                         ++ + +   +    +    +    L  L ++D+S    T       
Sbjct: 246 FSKDR------FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT------- 292

Query: 233 GALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS 273
                    D  A  L       +  +  L  + +  N LS
Sbjct: 293 ---------DEGARLL----LDHVDKIKHLKFINMKYNYLS 320

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 45  GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL 104
           G+ +    L+L  NSL       F   T L  L +G N+   ++P  +  + +SL  LNL
Sbjct: 25  GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL 83

Query: 105 RSNKFRGVLPNQLC-GLTSLHVLDLADNHLSGSIPK 139
            +N+ +  LPN +   LT L  L L  N L  S+P 
Sbjct: 84  STNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPD 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.98
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.98
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.98
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.98
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.92
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.92
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.84
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.29
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.27
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	87.14
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	85.92
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.64
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	84.43
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	84.23
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	82.26

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.2e-41  Score=337.25  Aligned_cols=303  Identities=34%  Similarity=0.560  Sum_probs=254.6

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++.+|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            36788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc-c
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV-Q  159 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~-~  159 (381)
                      +|++.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.++++.+... .
T Consensus       475 ~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          475 FNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             SSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred             CCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence            8888878887776 7888888888888888888888888888889999888888888888888888888888877654 2


Q ss_pred             CCCCCCC-------cccc-------------------------------------------ceEEEEeccccchhhhccc
Q 046668          160 YPSVSTG-------KYVE-------------------------------------------DALLVLKGKAVEYNTILKL  189 (381)
Q Consensus       160 ~~~~~~~-------~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~  189 (381)
                      .|.....       ....                                           .....+.+..+..+..++.
T Consensus       554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~  633 (768)
T 3rgz_A          554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS  633 (768)
T ss_dssp             CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred             CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence            2221100       0000                                           0001222233334556788


Q ss_pred             ccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCC
Q 046668          190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN  269 (381)
Q Consensus       190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  269 (381)
                      |+.|++++|++++.+|..++.++.|+.|+|++|.+++.+|..++.+++|++|||++|++++.+|..+..+++|++|++++
T Consensus       634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~  713 (768)
T 3rgz_A          634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN  713 (768)
T ss_dssp             CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred             ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCCCCCCCccCCCcccCC-CCCCCCCCCCCC
Q 046668          270 NNLSGKIPLSTQLQSFDPSSFTGN-RLCGSPLPNNCF  305 (381)
Q Consensus       270 N~l~~~~~~~~~l~~l~~~~~~~n-~l~~~~~~~~c~  305 (381)
                      |+++|.+|...++.++...++.|| .+||.|.. .|.
T Consensus       714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~  749 (768)
T 3rgz_A          714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCD  749 (768)
T ss_dssp             SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCC
T ss_pred             CcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCC
Confidence            999999999999999999999999 79999876 784

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.7e-38  Score=283.00  Aligned_cols=256  Identities=31%  Similarity=0.570  Sum_probs=210.6

Q ss_pred             ccEEEcCCCcccc--cCCccccCCCCCCEEECcC-CcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEe
Q 046668            2 IRILKLGENHFSG--EIPDCWMNWLDLLVLNLGN-NNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLD   78 (381)
Q Consensus         2 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   78 (381)
                      ++.|++++|.+++  .+|..|.++++|++|++++ |.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            5677777777777  6777777777777777774 777777777777777777777777777777777777777777777


Q ss_pred             CcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCC-CCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668           79 IGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT-SLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD  157 (381)
Q Consensus        79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~  157 (381)
                      +++|.+.+.+|..+. .+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..              
T Consensus       132 Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--------------  196 (313)
T 1ogq_A          132 FSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------------  196 (313)
T ss_dssp             CCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------------
T ss_pred             CCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------------
Confidence            777777766776665 677777777777777777777777776 7777777777777666655543              


Q ss_pred             ccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668          158 VQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES  237 (381)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  237 (381)
                                                   ++ |+.|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++
T Consensus       197 -----------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~  245 (313)
T 1ogq_A          197 -----------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN  245 (313)
T ss_dssp             -----------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTT
T ss_pred             -----------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCC
Confidence                                         33 88999999999999999999999999999999999966665 788999


Q ss_pred             CCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC-CCCCCCCCCCC
Q 046668          238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN-RLCGSPLPNNC  304 (381)
Q Consensus       238 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n-~l~~~~~~~~c  304 (381)
                      |++|++++|.+++.+|..+..+++|+.|++++|++++.+|....++.++.+++.+| .+||.|.+ .|
T Consensus       246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            99999999999999999999999999999999999999999888999999999999 59998765 46

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-36  Score=303.31  Aligned_cols=300  Identities=32%  Similarity=0.509  Sum_probs=233.7

Q ss_pred             CccEEEcCCCcccccCCccccCCC-CCCEEECcCCcCcccCCccCCC--CCCCCEEEccCCccceeCCccccCCCCCCEE
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWL-DLLVLNLGNNNFTGNIPISLGM--LSSLQSLNLRKNSLSGQIPASFQNCTKLVML   77 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   77 (381)
                      +|++|++++|.+++.+|..+.+++ +|++|++++|.+++..|..+..  +++|++|++++|.+++.+|..+.++++|++|
T Consensus       344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  423 (768)
T 3rgz_A          344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL  423 (768)
T ss_dssp             TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred             CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence            477888888888878888887776 7888888888887777776665  6778888888888777777778888888888


Q ss_pred             eCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668           78 DIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD  157 (381)
Q Consensus        78 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~  157 (381)
                      ++++|.+.+.+|..+. .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.++++.+..
T Consensus       424 ~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l  502 (768)
T 3rgz_A          424 HLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL  502 (768)
T ss_dssp             ECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECcCCcccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence            8888877777777666 677788888888877777777777777788888888877777777777777777777777765


Q ss_pred             ccCCCCCCCccccceEEEE-----eccccchhhhcccccEEEccCCcccccCchhh------------------------
Q 046668          158 VQYPSVSTGKYVEDALLVL-----KGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI------------------------  208 (381)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~------------------------  208 (381)
                      ..................+     .+..+..+..+++|+.|++++|++++.+|..+                        
T Consensus       503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (768)
T 3rgz_A          503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG  582 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred             CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence            5322211111222222222     23344566778889999999998887766543                        


Q ss_pred             ----------------------------------------------hccccCcEEeCCCcccccccChhhhccCCCCEEe
Q 046668          209 ----------------------------------------------MNLRALVSLDLSCNSFTGRIPNSIGALESILSID  242 (381)
Q Consensus       209 ----------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  242 (381)
                                                                    ..++.|+.|++++|++++.+|..++.+++|+.|+
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  662 (768)
T 3rgz_A          583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN  662 (768)
T ss_dssp             CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence                                                          3357789999999999999999999999999999


Q ss_pred             ccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCCCCCCCC
Q 046668          243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGSPLP  301 (381)
Q Consensus       243 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~~~~~~  301 (381)
                      |++|.+++.+|..+..+++|+.||+++|+++|.+|.. ..++.|+.+++++|.++|..+.
T Consensus       663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            9999999999999999999999999999999999975 6678889999999988876543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=280.53  Aligned_cols=278  Identities=22%  Similarity=0.213  Sum_probs=213.8

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|+|++|++++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            47899999999998888899999999999999999998889999999999999999999997777788999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++.+..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.++++.+.....
T Consensus       113 ~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          113 ENKIVILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TSCCCEECTTTTT-TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCccccCChhHcc-ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            9999865555554 899999999999999988888999999999999999999866667788888888888887766554


Q ss_pred             CCCCCCccccceEEE------------------------Eeccc-----cchhhhcccccEEEccCCcccccCchhhhcc
Q 046668          161 PSVSTGKYVEDALLV------------------------LKGKA-----VEYNTILKLMRLIDLSKNKFSGEIPSEIMNL  211 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~------------------------~~~~~-----~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l  211 (381)
                      +..............                        +.+..     ...+..+++|+.|++++|.+++..+..|..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            432222222222222                        21111     1234456667777777777776666667777


Q ss_pred             ccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668          212 RALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  279 (381)
                      ++|++|+|++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.|.|+..
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL  339 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence            77777777777777666777777777777777777777665566667777777777777777766543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.6e-35  Score=276.90  Aligned_cols=295  Identities=20%  Similarity=0.159  Sum_probs=196.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      +|++|++++|.+++..|..|.++++|++|++++|.+. .+.+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            4799999999999888999999999999999999986 345778999999999999999999888999999999999999


Q ss_pred             cCCcCcccCChh-HHhcCCCCcEEEcccccccccCCcC-ccCCCCCCEEeccCCcCCCCcCcccccc-------------
Q 046668           80 GENEFVGNVPTW-IGIRFSSLMILNLRSNKFRGVLPNQ-LCGLTSLHVLDLADNHLSGSIPKCISNI-------------  144 (381)
Q Consensus        80 ~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------  144 (381)
                      ++|.+.+.++.. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+             
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence            999998654443 2337899999999999999877765 8899999999999999998777777655             


Q ss_pred             ---------------------cccccccccCCccccCCC----------------------------------CCCC---
Q 046668          145 ---------------------SSMVTANFSIGTDVQYPS----------------------------------VSTG---  166 (381)
Q Consensus       145 ---------------------~~L~~l~~~~~~~~~~~~----------------------------------~~~~---  166 (381)
                                           ++|+.++++.+.......                                  ....   
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  270 (455)
T 3v47_A          191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK  270 (455)
T ss_dssp             BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred             cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence                                 344444444443211000                                  0000   


Q ss_pred             --ccccceEEEEecc-----ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          167 --KYVEDALLVLKGK-----AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       167 --~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                        .........+.+.     ....+..+++|+.|++++|++.+..|..|..+++|++|++++|.+.+..|..+..+++|+
T Consensus       271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence              0000111111111     122233455555555555555555555555555556666665555544455555555566


Q ss_pred             EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCC
Q 046668          240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRL  295 (381)
Q Consensus       240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l  295 (381)
                      +|++++|.+++..|..+..+++|++|++++|++++..+.. ..++.++.+++.+|++
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            6666666555555555555556666666666555433221 3445555555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-34  Score=288.38  Aligned_cols=85  Identities=25%  Similarity=0.354  Sum_probs=57.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCcc--CCCCCCCCEEEccCCccceeCC-ccccCCCCCCEE
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPIS--LGMLSSLQSLNLRKNSLSGQIP-ASFQNCTKLVML   77 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L   77 (381)
                      +|++|+|++|.+++..|+.|.++++|++|+|++|.+++..+..  |.++++|++|++++|.+++..+ ..|.++++|++|
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            3677777777777666777777777777777777776544443  6677777777777777665443 456677777777


Q ss_pred             eCcCCcCc
Q 046668           78 DIGENEFV   85 (381)
Q Consensus        78 ~L~~n~l~   85 (381)
                      ++++|.+.
T Consensus       154 ~Ls~N~i~  161 (844)
T 3j0a_A          154 DFSSNQIF  161 (844)
T ss_dssp             EEESSCCC
T ss_pred             ECCCCcCC
Confidence            76666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-33  Score=266.51  Aligned_cols=281  Identities=22%  Similarity=0.227  Sum_probs=222.6

Q ss_pred             CccEEEcCCCcccccC-CccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCcc--ccCCCCCCEE
Q 046668            1 GIRILKLGENHFSGEI-PDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS--FQNCTKLVML   77 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L   77 (381)
                      +|++|++++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..  |.++++|++|
T Consensus        55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  134 (455)
T 3v47_A           55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML  134 (455)
T ss_dssp             TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred             cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence            5889999999987544 567999999999999999999888999999999999999999998655544  8999999999


Q ss_pred             eCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccC----------------------------------CCCC
Q 046668           78 DIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG----------------------------------LTSL  123 (381)
Q Consensus        78 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------------------l~~L  123 (381)
                      ++++|.+.+..|..++..+++|++|++++|.+.+..+..+..                                  +++|
T Consensus       135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L  214 (455)
T 3v47_A          135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI  214 (455)
T ss_dssp             ECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred             ECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence            999999986667765558999999999999988776655543                                  3678


Q ss_pred             CEEeccCCcCCCCcCcccccc---------------------------------------cccccccccCCccccCCCCC
Q 046668          124 HVLDLADNHLSGSIPKCISNI---------------------------------------SSMVTANFSIGTDVQYPSVS  164 (381)
Q Consensus       124 ~~L~L~~n~l~~~~~~~~~~l---------------------------------------~~L~~l~~~~~~~~~~~~~~  164 (381)
                      ++|++++|.+.+..|..+...                                       ++|+.++++.+.....+...
T Consensus       215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  294 (455)
T 3v47_A          215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV  294 (455)
T ss_dssp             EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred             eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence            888888887765444433222                                       35566666655544433222


Q ss_pred             CCccccceEEEEecc-----ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          165 TGKYVEDALLVLKGK-----AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       165 ~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                      ...........+.+.     ....+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            222233333333332     233456789999999999999988899999999999999999999988899999999999


Q ss_pred             EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCC
Q 046668          240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQ  281 (381)
Q Consensus       240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~  281 (381)
                      +|++++|++++..+..+..+++|+.|++++|+++|.||....
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  416 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  416 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence            999999999977777789999999999999999999996543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=9.9e-34  Score=254.17  Aligned_cols=230  Identities=28%  Similarity=0.439  Sum_probs=210.7

Q ss_pred             CccEEEcCC-CcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGE-NHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      +|++|++++ |.+.+.+|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            489999995 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCcccCChhHHhcCC-CCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc
Q 046668           80 GENEFVGNVPTWIGIRFS-SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV  158 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~  158 (381)
                      ++|++.+.+|..++ .++ +|++|++++|.+++..|..+..++ |++|++++|.+++..|..+..               
T Consensus       157 ~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~---------------  219 (313)
T 1ogq_A          157 DGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------  219 (313)
T ss_dssp             CSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT---------------
T ss_pred             cCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc---------------
Confidence            99999989999888 677 999999999999999999999887 999999999998777766655               


Q ss_pred             cCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668          159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                                                  +++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|.++..+++|
T Consensus       220 ----------------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  270 (313)
T 1ogq_A          220 ----------------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             ----------------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             ----------------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence                                        44588899999999866665 7889999999999999999999999999999


Q ss_pred             CEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCC
Q 046668          239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP  277 (381)
Q Consensus       239 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  277 (381)
                      ++|++++|.+++.+|.. ..+++|+.+++++|+..|..|
T Consensus       271 ~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            99999999999888886 789999999999999776544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.9e-33  Score=256.27  Aligned_cols=287  Identities=18%  Similarity=0.203  Sum_probs=215.9

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|++++|.++...+..|.++++|++|++++|.+++..+.+|..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            47899999999986555568899999999999999998888899999999999999999998888899999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|+.++++.+.....
T Consensus       126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred             CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence            99998 78877665899999999999999988888899999999999999998854   244556666666555543322


Q ss_pred             CCCCCCc----------------cccceEEEEecc---ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCC
Q 046668          161 PSVSTGK----------------YVEDALLVLKGK---AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC  221 (381)
Q Consensus       161 ~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~  221 (381)
                      +......                ........+.+.   ....+..+++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred             CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence            1111100                001111122111   123455677788888888888777777788888888888888


Q ss_pred             cccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCC
Q 046668          222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL  295 (381)
Q Consensus       222 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l  295 (381)
                      |.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++.. + ...++.++.+++.+|++
T Consensus       282 n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             SCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCE
T ss_pred             CcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCc
Confidence            8877 45555667788888888888877 4555667777888888888887643 3 34566777777777754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.5e-32  Score=265.45  Aligned_cols=292  Identities=19%  Similarity=0.172  Sum_probs=227.1

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      |++|++++|.+++..+..|.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+.++++|++|++++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            678999999999888888999999999999999998 6788889999999999999999877788899999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccC--CcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL--PNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      |.+.+.+|...+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..+++|+.++++.+....
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            98877777665557889999999999888665  6778888899999999998887778888888888888888876654


Q ss_pred             CCCC-CCCccccceEEEEecc-----ccchhhhcccccEEEccCCccccc---CchhhhccccCcEEeCCCcccccccCh
Q 046668          160 YPSV-STGKYVEDALLVLKGK-----AVEYNTILKLMRLIDLSKNKFSGE---IPSEIMNLRALVSLDLSCNSFTGRIPN  230 (381)
Q Consensus       160 ~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~  230 (381)
                      .... ............+.+.     ....+..+++|+.|++++|++.+.   .+..+..+++|++|++++|.+++..|.
T Consensus       415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  494 (606)
T 3t6q_A          415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH  494 (606)
T ss_dssp             CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred             cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence            3221 1222223333333322     334456678888888888888752   235678888888888888888877778


Q ss_pred             hhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCC
Q 046668          231 SIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRL  295 (381)
Q Consensus       231 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l  295 (381)
                      .+..+++|++|++++|++++..|..+..++.| .|++++|++++..|.. ..++.++.+++.+|++
T Consensus       495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            88888888888888888888788888888888 8888888888655542 3455667777777744

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.4e-32  Score=265.52  Aligned_cols=281  Identities=22%  Similarity=0.237  Sum_probs=217.4

Q ss_pred             CccccCCC--CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHh
Q 046668           17 PDCWMNWL--DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGI   94 (381)
Q Consensus        17 ~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   94 (381)
                      +..|.++.  +|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+.++++|++|++++|++.+..|..+. 
T Consensus       245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~-  322 (606)
T 3t6q_A          245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS-  322 (606)
T ss_dssp             GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG-
T ss_pred             hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh-
Confidence            34455544  7999999999999888888999999999999999998 7888999999999999999999855565555 


Q ss_pred             cCCCCcEEEcccccccccCCc-CccCCCCCCEEeccCCcCCCCc--CcccccccccccccccCCccccCCCCCCCccccc
Q 046668           95 RFSSLMILNLRSNKFRGVLPN-QLCGLTSLHVLDLADNHLSGSI--PKCISNISSMVTANFSIGTDVQYPSVSTGKYVED  171 (381)
Q Consensus        95 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  171 (381)
                      .+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+..  +..+..+++|+.++++.+.....+..........
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  402 (606)
T 3t6q_A          323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL  402 (606)
T ss_dssp             GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred             ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence            899999999999998866654 5899999999999999998655  7789999999999999887655433322222233


Q ss_pred             eEEEEeccc------cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccc---cChhhhccCCCCEEe
Q 046668          172 ALLVLKGKA------VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGR---IPNSIGALESILSID  242 (381)
Q Consensus       172 ~~~~~~~~~------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~  242 (381)
                      ....+.+..      ...+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.   .+..+..+++|++|+
T Consensus       403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence            333332221      12255677888888888888877777788888888888888888752   235577888888888


Q ss_pred             ccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCCCCCCC
Q 046668          243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGSPL  300 (381)
Q Consensus       243 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~~~~~  300 (381)
                      +++|.+++..|..+..+++|+.|++++|++++..|.. ..++.+ .+++.+|.+.+.++
T Consensus       483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence            8888888777788888888888888888887765543 455666 66777776665443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3e-32  Score=265.70  Aligned_cols=288  Identities=18%  Similarity=0.198  Sum_probs=223.7

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +++.|++++|.+....+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            46889999999986666668889999999999999998888899999999999999999998888889999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|.+. .+|..++..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..   +..+++|+.++++.+....+
T Consensus       132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred             CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence            99998 777776558999999999999999888888999999999999999988542   34455555555555443322


Q ss_pred             CCCCCCc----------------cccceEEEEecc---ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCC
Q 046668          161 PSVSTGK----------------YVEDALLVLKGK---AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC  221 (381)
Q Consensus       161 ~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~  221 (381)
                      +......                ........+.+.   ....+..++.|+.|++++|.+.+..|..|..+++|+.|+|++
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred             cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence            1111000                001112222221   124456788899999999998888888888899999999999


Q ss_pred             cccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCC
Q 046668          222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLC  296 (381)
Q Consensus       222 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~  296 (381)
                      |.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++. + ...++.|..+++.+|++.
T Consensus       288 N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             SCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEE
T ss_pred             CCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCC
Confidence            9888 45666677889999999999888 5677778888899999999988754 3 345677888888888553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=1.5e-31  Score=252.35  Aligned_cols=252  Identities=21%  Similarity=0.206  Sum_probs=214.0

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +.++.++..++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            45666777777 5665543  68999999999999888889999999999999999999888889999999999999999


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC-cccccccccccccccCCccccCC
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP-KCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      ++. .+|...+..+++|++|+|++|.+....+..|.++++|++|++++|...+.++ ..+..+++|+.|+++.+.....+
T Consensus       134 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          134 WLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP  212 (452)
T ss_dssp             CCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred             cCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence            987 6666555578999999999999987777788899999999999854433444 56888899999998888766544


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI  241 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  241 (381)
                      .                     +..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|
T Consensus       213 ~---------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          213 N---------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             C---------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             c---------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            3                     2347789999999999999999999999999999999999998889999999999999


Q ss_pred             eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668          242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  279 (381)
                      ++++|.+++..+..+..+++|+.|++++|++.|+|...
T Consensus       272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             ECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             ECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            99999999877788899999999999999999998753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=251.57  Aligned_cols=252  Identities=22%  Similarity=0.230  Sum_probs=217.2

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +.++.++..++ .+|..+.  ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            45677777777 5666553  68999999999999888889999999999999999999888889999999999999999


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCc-CcccccccccccccccCCccccCC
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSI-PKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      ++. .++...+..+++|++|++++|.+....+..|..+++|++|++++|...+.+ +..|.++++|+.|+++.+....++
T Consensus       123 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            998 666654557899999999999999777778999999999999985443344 457888999999999888766554


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI  241 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  241 (381)
                      .                     +..+++|+.|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus       202 ~---------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          202 N---------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             C---------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred             c---------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence            3                     2347789999999999999889999999999999999999998889999999999999


Q ss_pred             eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668          242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  279 (381)
                      +|++|++++..+..+..+++|+.|++++|++.|+|...
T Consensus       261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             ECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred             ECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence            99999999888888899999999999999999998754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.9e-32  Score=263.76  Aligned_cols=113  Identities=23%  Similarity=0.199  Sum_probs=66.1

Q ss_pred             hhhcccccEEEccCCcccccCchhhhccccCcEEeCCCccccc-ccChhhhccCCCCEEeccCCcCcccCchhhhCCCCC
Q 046668          184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG-RIPNSIGALESILSIDFSANQLYGEIPQSISSLTFL  262 (381)
Q Consensus       184 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  262 (381)
                      +..++.|+.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.+++..|..+..+++|
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            3445566666666666665555556666666666666666654 245556666666666666666665555556666666


Q ss_pred             CeeeCCCCcceecCCCC-CCCCccCCCcccCCCCC
Q 046668          263 SRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLC  296 (381)
Q Consensus       263 ~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~  296 (381)
                      ++|++++|++++..|.. ..++.++.+++++|.+.
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            66666666665544332 33455555555555444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.4e-32  Score=266.94  Aligned_cols=158  Identities=24%  Similarity=0.351  Sum_probs=140.3

Q ss_pred             CccEEEcCCCccccc-----------------CCcccc--CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-c
Q 046668            1 GIRILKLGENHFSGE-----------------IPDCWM--NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-L   60 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l   60 (381)
                      +|++|+|++|.+++.                 +|..+.  ++++|++|+|++|.+.+.+|..|.++++|++|++++|. +
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            589999999999985                 899988  99999999999999999999999999999999999998 8


Q ss_pred             ce-eCCccccCC------CCCCEEeCcCCcCcccCCh--hHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCC
Q 046668           61 SG-QIPASFQNC------TKLVMLDIGENEFVGNVPT--WIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN  131 (381)
Q Consensus        61 ~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  131 (381)
                      ++ .+|..+.++      ++|++|++++|++. .+|.  .+. .+++|++|++++|.+.+.+| .+..+++|++|++++|
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence            87 788888776      89999999999998 8887  666 89999999999999998888 8888889999999999


Q ss_pred             cCCCCcCcccccccc-cccccccCCccccCCC
Q 046668          132 HLSGSIPKCISNISS-MVTANFSIGTDVQYPS  162 (381)
Q Consensus       132 ~l~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~  162 (381)
                      .++ .+|..+..+++ |+.++++.+....+|.
T Consensus       364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~  394 (636)
T 4eco_A          364 QIT-EIPANFCGFTEQVENLSFAHNKLKYIPN  394 (636)
T ss_dssp             EEE-ECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred             ccc-cccHhhhhhcccCcEEEccCCcCcccch
Confidence            888 78888888888 8888888887766554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.8e-31  Score=263.29  Aligned_cols=278  Identities=19%  Similarity=0.193  Sum_probs=207.7

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc--ccCCccCCCC--CCCCEEEccCCccceeCCccccCCCCCCE
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT--GNIPISLGML--SSLQSLNLRKNSLSGQIPASFQNCTKLVM   76 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   76 (381)
                      +|++|++++|.+++..+..|.++++|++|++++|.+.  ......|..+  ++|++|++++|.+++..|.+|.++++|++
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence            3567777777777666666777777777777766532  2222233322  46777777777777777888888888888


Q ss_pred             EeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC--CCcCcccccccccccccccC
Q 046668           77 LDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS--GSIPKCISNISSMVTANFSI  154 (381)
Q Consensus        77 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~~~~  154 (381)
                      |++++|.+.+.+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.  +..|..+..+++|+.++++.
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~  489 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN  489 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence            8888888876677555557888888888888888777777777888888888888775  45677778888888888877


Q ss_pred             CccccCCCCCCCccccceEEEEeccccc-------------hhhhcccccEEEccCCcccccCchhhhccccCcEEeCCC
Q 046668          155 GTDVQYPSVSTGKYVEDALLVLKGKAVE-------------YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC  221 (381)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~  221 (381)
                      +.....+..............+.++...             .+..+++|+.|++++|+++...+..|..+++|++|++++
T Consensus       490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~  569 (680)
T 1ziw_A          490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL  569 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence            7766555443333334444444443322             246678899999999999866666789999999999999


Q ss_pred             cccccccChhhhccCCCCEEeccCCcCcccCchhhh-CCCCCCeeeCCCCcceecCCC
Q 046668          222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSIS-SLTFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       222 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~  278 (381)
                      |.+++..+..|..+++|++|++++|++++..+..+. .+++|+.+++++|++.|+|+.
T Consensus       570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999976667788999999999999999987777776 788999999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.8e-31  Score=239.38  Aligned_cols=264  Identities=21%  Similarity=0.275  Sum_probs=225.0

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ++.++++++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++
T Consensus        33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            678999999988 5676553  6899999999999988888999999999999999999988899999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCC--CcCcccccccccccccccCCcccc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG--SIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      |++. .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+..+++|+.++++.+....
T Consensus       110 n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          110 NQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            9998 7777653   799999999999997777789999999999999999863  667889999999999998887665


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                      ++...                      .++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       186 l~~~~----------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  243 (330)
T 1xku_A          186 IPQGL----------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  243 (330)
T ss_dssp             CCSSC----------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             CCccc----------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence            44321                      25799999999999988889999999999999999999977777899999999


Q ss_pred             EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-------CCCCccCCCcccCCCC
Q 046668          240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-------TQLQSFDPSSFTGNRL  295 (381)
Q Consensus       240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-------~~l~~l~~~~~~~n~l  295 (381)
                      +|++++|.++ .+|..+..+++|++|++++|++++..+..       .....+..+++.+|++
T Consensus       244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             EEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            9999999999 77888899999999999999998643321       1124455666777754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.98  E-value=1.6e-31  Score=254.11  Aligned_cols=289  Identities=19%  Similarity=0.214  Sum_probs=235.9

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +.++.++++++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            46778888888 5676553  68999999999999888999999999999999999999888999999999999999999


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCC
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPS  162 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~  162 (381)
                      ++. .+|...+..+++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.++++.+.....+.
T Consensus        91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence            998 6776655589999999999999998889999999999999999999998888899999999999999987765543


Q ss_pred             CCCCccccceEEEEecccc-----chhhhc------------------------ccccEEEccCCcccccCchhhhcccc
Q 046668          163 VSTGKYVEDALLVLKGKAV-----EYNTIL------------------------KLMRLIDLSKNKFSGEIPSEIMNLRA  213 (381)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~-----~~~~~~------------------------~~L~~L~L~~n~~~~~~~~~~~~l~~  213 (381)
                      .............+.....     ..+..+                        .+|+.|++++|++++..+..+..+++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            2122222222223322111     111112                        26777777788887655567899999


Q ss_pred             CcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccC
Q 046668          214 LVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTG  292 (381)
Q Consensus       214 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~  292 (381)
                      |++|+|++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+.. ..++.|+.+++.+
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence            999999999999777888999999999999999999888889999999999999999998654432 4567788888888


Q ss_pred             CCC
Q 046668          293 NRL  295 (381)
Q Consensus       293 n~l  295 (381)
                      |++
T Consensus       330 N~l  332 (477)
T 2id5_A          330 NPL  332 (477)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            854

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.98  E-value=1.7e-31  Score=270.22  Aligned_cols=274  Identities=18%  Similarity=0.140  Sum_probs=187.2

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      +|++|+|++|.+++..+..|.++++|++|+|++|... .+.|.+|.++++|++|+|++|.+.+..|.+|.++++|++|++
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  104 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL  104 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence            4789999999999888999999999999999999544 445889999999999999999999888999999999999999


Q ss_pred             cCCcCcccCChh-HHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcccccc--cccccccccCC
Q 046668           80 GENEFVGNVPTW-IGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKCISNI--SSMVTANFSIG  155 (381)
Q Consensus        80 ~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~l~~~~~  155 (381)
                      ++|.+.+.+|.. .+..+++|++|+|++|.+.+..+ ..|.++++|++|++++|.+.+..+..+..+  ++|+.++++.+
T Consensus       105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n  184 (844)
T 3j0a_A          105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN  184 (844)
T ss_dssp             TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred             cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence            999998766654 23379999999999999987654 578999999999999999988888877766  66776666655


Q ss_pred             ccccCCCCCCCc------cccceEEEEecc-----------------------------------------ccchhhh--
Q 046668          156 TDVQYPSVSTGK------YVEDALLVLKGK-----------------------------------------AVEYNTI--  186 (381)
Q Consensus       156 ~~~~~~~~~~~~------~~~~~~~~~~~~-----------------------------------------~~~~~~~--  186 (381)
                      ............      ........+.+.                                         ....+..  
T Consensus       185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~  264 (844)
T 3j0a_A          185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA  264 (844)
T ss_dssp             BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred             ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence            433211100000      000000000000                                         0000000  


Q ss_pred             cccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeee
Q 046668          187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK  266 (381)
Q Consensus       187 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  266 (381)
                      .++|+.|++++|.+.+..+..|..+++|+.|+|++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus       265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            24455666666655555555555556666666666655555555555555566666666555555555555555555555


Q ss_pred             CCCCccee
Q 046668          267 LSNNNLSG  274 (381)
Q Consensus       267 l~~N~l~~  274 (381)
                      +++|++.+
T Consensus       345 L~~N~i~~  352 (844)
T 3j0a_A          345 LQKNHIAI  352 (844)
T ss_dssp             CCSCCCCC
T ss_pred             CCCCCCCc
Confidence            55555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=6.1e-31  Score=238.23  Aligned_cols=264  Identities=21%  Similarity=0.280  Sum_probs=224.1

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ++.++++++.++ .+|..+  .++|++|++++|.+++..+.+|.++++|++|++++|.+++..|.+|.++++|++|++++
T Consensus        35 l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           35 LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             CCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            688999999988 667665  37999999999999988888999999999999999999988899999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC--CCcCcccccccccccccccCCcccc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS--GSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      |++. .+|..++   ++|++|++++|.+....+..+..+++|++|++++|.++  +..+..+..+ +|+.++++.+....
T Consensus       112 n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          112 NHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            9998 7887654   79999999999999777777999999999999999996  3667788887 89999998887665


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                      +|...                      .+.|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       187 l~~~~----------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  244 (332)
T 2ft3_A          187 IPKDL----------------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR  244 (332)
T ss_dssp             CCSSS----------------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred             cCccc----------------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence            44321                      25699999999999988888899999999999999999977777899999999


Q ss_pred             EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC--C-----CCCccCCCcccCCCCC
Q 046668          240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--T-----QLQSFDPSSFTGNRLC  296 (381)
Q Consensus       240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--~-----~l~~l~~~~~~~n~l~  296 (381)
                      +|++++|.++ .+|..+..+++|+.|++++|++++..+..  .     ....+..+++.+|++.
T Consensus       245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             EEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            9999999998 77888899999999999999998643321  1     1344566677777543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.98  E-value=3e-32  Score=267.29  Aligned_cols=289  Identities=21%  Similarity=0.284  Sum_probs=207.4

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCc-Ccc-cCCccCCCC------CCCCEEEccCCccceeCCc--cccC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNN-FTG-NIPISLGML------SSLQSLNLRKNSLSGQIPA--SFQN   70 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~   70 (381)
                      +|++|++++|.+.+.+|..|.++++|++|++++|. +++ .+|..++.+      ++|++|++++|.++ .+|.  .+.+
T Consensus       250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~  328 (636)
T 4eco_A          250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK  328 (636)
T ss_dssp             TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT
T ss_pred             CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc
Confidence            47899999999999999999999999999999998 887 788777766      89999999999988 7787  8889


Q ss_pred             CCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCC-CCEEeccCCcCCCCcCccccccc--cc
Q 046668           71 CTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS-LHVLDLADNHLSGSIPKCISNIS--SM  147 (381)
Q Consensus        71 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L  147 (381)
                      +++|++|++++|++.|.+| .+. .+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+.  +|
T Consensus       329 l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  404 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM  404 (636)
T ss_dssp             CTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred             CCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence            9999999999999888888 544 7888888888888888 77777888888 888888888888 7777776654  78


Q ss_pred             ccccccCCccccCCCCCCC-------ccccceEEEEecccc-----chhhhcccccEEEccCCcccccCchhhhcc----
Q 046668          148 VTANFSIGTDVQYPSVSTG-------KYVEDALLVLKGKAV-----EYNTILKLMRLIDLSKNKFSGEIPSEIMNL----  211 (381)
Q Consensus       148 ~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l----  211 (381)
                      +.++++.+...........       .........+.+...     .....+++|+.|++++|+++...+..+...    
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~  484 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF  484 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence            8888877766442211111       112223333333222     122346777777777777773333333322    


Q ss_pred             ---ccCcEEeCCCcccccccChhhh--ccCCCCEEeccCCcCcccCchhhhCCCCCCeeeC------CCCcceecCCCC-
Q 046668          212 ---RALVSLDLSCNSFTGRIPNSIG--ALESILSIDFSANQLYGEIPQSISSLTFLSRLKL------SNNNLSGKIPLS-  279 (381)
Q Consensus       212 ---~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l------~~N~l~~~~~~~-  279 (381)
                         ++|++|++++|.++ .+|..+.  .+++|++|++++|.+++ +|..+..+++|+.|++      ++|++.+.+|.. 
T Consensus       485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l  562 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI  562 (636)
T ss_dssp             TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred             cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence               27777777777777 6666665  77777777777777775 6666777777777777      345566666643 


Q ss_pred             CCCCccCCCcccCCCCC
Q 046668          280 TQLQSFDPSSFTGNRLC  296 (381)
Q Consensus       280 ~~l~~l~~~~~~~n~l~  296 (381)
                      ..++.|+.+++++|.+.
T Consensus       563 ~~l~~L~~L~Ls~N~l~  579 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDIR  579 (636)
T ss_dssp             GGCSSCCEEECCSSCCC
T ss_pred             hcCCCCCEEECCCCcCC
Confidence            44666777777777663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.98  E-value=7.1e-32  Score=261.00  Aligned_cols=153  Identities=20%  Similarity=0.230  Sum_probs=129.8

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|++++..|..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            47899999999998888999999999999999999998888999999999999999999998777789999999999999


Q ss_pred             CCcCcc-cCChhHHhcCCCCcEEEccccc-ccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccC
Q 046668           81 ENEFVG-NVPTWIGIRFSSLMILNLRSNK-FRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI  154 (381)
Q Consensus        81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~  154 (381)
                      +|.+.+ ..|..+. .+++|++|++++|. +....+..+.++++|++|++++|.+.+..|..+..+++|+.++++.
T Consensus       107 ~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          107 GNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             TCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             CCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            999874 2445554 78999999999998 4544446889999999999999999877787777665555554433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.98  E-value=1.3e-31  Score=237.37  Aligned_cols=243  Identities=20%  Similarity=0.183  Sum_probs=204.6

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            46788888888 556544  468999999999999888888999999999999999999888999999999999999999


Q ss_pred             c-CcccC-ChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           83 E-FVGNV-PTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        83 ~-l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      + +. .+ |..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..                 
T Consensus        91 ~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------  151 (285)
T 1ozn_A           91 AQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----------------  151 (285)
T ss_dssp             TTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------
T ss_pred             CCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------
Confidence            7 65 55 44444 7899999999999999877888999999999999999988544444443                 


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS  240 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  240 (381)
                                                +++|+.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus       152 --------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  205 (285)
T 1ozn_A          152 --------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (285)
T ss_dssp             --------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             --------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence                                      455889999999998777778999999999999999999888999999999999


Q ss_pred             EeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC
Q 046668          241 IDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN  293 (381)
Q Consensus       241 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n  293 (381)
                      |++++|.+++..+..+..+++|+.|++++|++.|.++....+.+++......+
T Consensus       206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~  258 (285)
T 1ozn_A          206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS  258 (285)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEEC
T ss_pred             eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccC
Confidence            99999999987777899999999999999999998886544455555444444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=2.4e-31  Score=260.34  Aligned_cols=146  Identities=22%  Similarity=0.187  Sum_probs=124.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|++++|.+++..+..|.++++|++|++++|.++++.|.+|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            47899999999998888889999999999999999998888899999999999999999998889999999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccc-cCCcCccCCCCCCEEeccCCcCCCCcCccccccccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRG-VLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM  147 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  147 (381)
                      +|.+.+..+..+. .+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|
T Consensus       113 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          113 ETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             TSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             CCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            9998744434544 78999999999999885 458889999999999999999887666666555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=7.3e-31  Score=258.09  Aligned_cols=140  Identities=21%  Similarity=0.232  Sum_probs=123.7

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|||++|+|+++.+.+|.++++|++|+|++|.|+++.+++|.++++|++|+|++|.+++..+.+|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            47899999999998888899999999999999999998889999999999999999999998888899999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcCCCCcCccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCI  141 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  141 (381)
                      +|++. .++...+..+++|++|++++|.++.. .|..+..+++|++|++++|++++..+..+
T Consensus       133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          133 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence            99998 56655444899999999999999753 56788899999999999998875444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=9.2e-31  Score=259.55  Aligned_cols=269  Identities=20%  Similarity=0.192  Sum_probs=184.7

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..+.+|.++++|++|+++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  105 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM  105 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence            47899999999998777889999999999999999998889999999999999999999997666689999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccc--cccccccccccCCccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCIS--NISSMVTANFSIGTDV  158 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~~~~~~~~  158 (381)
                      +|++.+..|..+. .+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.  .+++|+.++++.+...
T Consensus       106 ~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          106 SNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             SSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            9999743334454 899999999999999988888899999999999999999876666554  4588999999888665


Q ss_pred             cCCCCCCCccccceEEEEeccccch--------hhhcccccEEEccCCcccccCchhhhcccc--CcEEeCCCccccccc
Q 046668          159 QYPSVSTGKYVEDALLVLKGKAVEY--------NTILKLMRLIDLSKNKFSGEIPSEIMNLRA--LVSLDLSCNSFTGRI  228 (381)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~  228 (381)
                      ..+..............+.......        ....+.|+.|++++|.+.+..|..+..++.  |++|++++|.+++..
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            5443221111111111111110000        001244555555555555555555554433  555555555555444


Q ss_pred             ChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCC
Q 046668          229 PNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNN  270 (381)
Q Consensus       229 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N  270 (381)
                      |..++.+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence            455555555555555555555444444444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.8e-30  Score=233.74  Aligned_cols=266  Identities=19%  Similarity=0.222  Sum_probs=218.5

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.++ .+|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence            4789999999999877778999999999999999999888999999999999999999998 5565543  799999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccc--cCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRG--VLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV  158 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~  158 (381)
                      +|++. .++...+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++ .+|..+.  ++|+.++++.+...
T Consensus       130 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred             CCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence            99998 5665555589999999999999963  66788999999999999999998 4565544  78888988877654


Q ss_pred             cCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668          159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                      ..+                   ...+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus       206 ~~~-------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          206 KVD-------------------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             EEC-------------------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             ccC-------------------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence            321                   233455788999999999999888888999999999999999999 888889999999


Q ss_pred             CEEeccCCcCcccCchhhhC------CCCCCeeeCCCCcceecC-CCC--CCCCccCCCcccCC
Q 046668          239 LSIDFSANQLYGEIPQSISS------LTFLSRLKLSNNNLSGKI-PLS--TQLQSFDPSSFTGN  293 (381)
Q Consensus       239 ~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~N~l~~~~-~~~--~~l~~l~~~~~~~n  293 (381)
                      ++|++++|.+++..+..+..      .+.++.+++++|++.... +..  ..+..++.+++++|
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            99999999999766666643      368999999999987532 211  23445555556555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.7e-31  Score=255.27  Aligned_cols=130  Identities=23%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      +++|++++|.+++..+.+|.++++|++|+|++|.++++.+.+|.++++|++|++++|.+++..|.+|.++++|++|++++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  109 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence            45556666655555555555556666666665555555555555555555555555555555455555555555555555


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccc-cCCcCccCCCCCCEEeccCCc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRG-VLPNQLCGLTSLHVLDLADNH  132 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~  132 (381)
                      |++. .++...+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.
T Consensus       110 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          110 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             SCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             cccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            5544 2222111144444444444444443 134444444444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.4e-31  Score=252.65  Aligned_cols=290  Identities=17%  Similarity=0.158  Sum_probs=169.7

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++..|..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.++ .+|..  .+++|++|+++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence            3566777777766655566667777777777777776666666777777777777777766 34433  66677777777


Q ss_pred             CCcCcc-cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCC--CEEeccCCcC--CCCcCccccc------------
Q 046668           81 ENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL--HVLDLADNHL--SGSIPKCISN------------  143 (381)
Q Consensus        81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~------------  143 (381)
                      +|++.+ .+|..+. .+++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..            
T Consensus        99 ~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  174 (520)
T 2z7x_B           99 FNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT  174 (520)
T ss_dssp             SSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred             CCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence            776654 3455554 66677777777766654   234445555  6666666665  4444443333            


Q ss_pred             --------------ccccccccccCCc-----------------------------------------------------
Q 046668          144 --------------ISSMVTANFSIGT-----------------------------------------------------  156 (381)
Q Consensus       144 --------------l~~L~~l~~~~~~-----------------------------------------------------  156 (381)
                                    +++|+.++++.+.                                                     
T Consensus       175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l  254 (520)
T 2z7x_B          175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI  254 (520)
T ss_dssp             SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred             CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence                          3333333333321                                                     


Q ss_pred             ----cc-cCCCCCC----CccccceEEEEeccc--------------------------cch---hhhcccccEEEccCC
Q 046668          157 ----DV-QYPSVST----GKYVEDALLVLKGKA--------------------------VEY---NTILKLMRLIDLSKN  198 (381)
Q Consensus       157 ----~~-~~~~~~~----~~~~~~~~~~~~~~~--------------------------~~~---~~~~~~L~~L~L~~n  198 (381)
                          .. ..|....    ..........+....                          ...   ...++.|+.|++++|
T Consensus       255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n  334 (520)
T 2z7x_B          255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN  334 (520)
T ss_dssp             EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred             ecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence                11 0111000    000000001111000                          000   045667788888888


Q ss_pred             cccccCchhhhccccCcEEeCCCccccc--ccChhhhccCCCCEEeccCCcCcccCch-hhhCCCCCCeeeCCCCcceec
Q 046668          199 KFSGEIPSEIMNLRALVSLDLSCNSFTG--RIPNSIGALESILSIDFSANQLYGEIPQ-SISSLTFLSRLKLSNNNLSGK  275 (381)
Q Consensus       199 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~N~l~~~  275 (381)
                      ++++..|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.
T Consensus       335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~  414 (520)
T 2z7x_B          335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT  414 (520)
T ss_dssp             CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred             ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence            8877777777788888888888888775  4456677778888888888887764554 366677777777777777665


Q ss_pred             CCCCCCCCccCCCcccCCCCCCC
Q 046668          276 IPLSTQLQSFDPSSFTGNRLCGS  298 (381)
Q Consensus       276 ~~~~~~l~~l~~~~~~~n~l~~~  298 (381)
                      .|..- .+.++.+++++|.+...
T Consensus       415 ~~~~l-~~~L~~L~Ls~N~l~~i  436 (520)
T 2z7x_B          415 IFRCL-PPRIKVLDLHSNKIKSI  436 (520)
T ss_dssp             GGGSC-CTTCCEEECCSSCCCCC
T ss_pred             hhhhh-cccCCEEECCCCccccc
Confidence            54321 14566666676655533

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.9e-30  Score=235.05  Aligned_cols=265  Identities=21%  Similarity=0.256  Sum_probs=218.9

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence            4789999999999888889999999999999999999888999999999999999999998 5555544  899999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEccccccc--ccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFR--GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV  158 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~  158 (381)
                      +|++. .++...+..+++|++|++++|.++  +..+..+..+ +|++|++++|.+++ +|..+.  ++|+.++++.+...
T Consensus       132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ  206 (332)
T ss_dssp             SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred             CCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence            99998 666655558999999999999996  3667788888 99999999999984 665554  68899998888665


Q ss_pred             cCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668          159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                      ..+.                   ..+..+++|+.|++++|++.+..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus       207 ~~~~-------------------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L  266 (332)
T 2ft3_A          207 AIEL-------------------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL  266 (332)
T ss_dssp             CCCT-------------------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred             ccCH-------------------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence            4332                   22344788999999999999888888999999999999999999 888889999999


Q ss_pred             CEEeccCCcCcccCchhhhC------CCCCCeeeCCCCccee--cCCC-CCCCCccCCCcccCC
Q 046668          239 LSIDFSANQLYGEIPQSISS------LTFLSRLKLSNNNLSG--KIPL-STQLQSFDPSSFTGN  293 (381)
Q Consensus       239 ~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~N~l~~--~~~~-~~~l~~l~~~~~~~n  293 (381)
                      ++|++++|.+++..+..+..      .+.|+.|++++|++..  ..|. ...++.++.+++.+|
T Consensus       267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            99999999999776666654      3678999999999873  2222 134566666666665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=3.3e-31  Score=237.27  Aligned_cols=254  Identities=19%  Similarity=0.216  Sum_probs=212.9

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcccee--CCccccCCCCCCEEeCc
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ--IPASFQNCTKLVMLDIG   80 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~   80 (381)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..|.++++|++|++++|.++..  .+..+.++++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            46788888887 566554  36899999999999866666788999999999999988733  36777889999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      +|.+. .+|..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.++++.+....
T Consensus        87 ~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            99987 6776655 78999999999999986554 578889999999999999988888889999999999888776432


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                      .                  .....+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       165 ~------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  226 (306)
T 2z66_A          165 N------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  226 (306)
T ss_dssp             G------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred             c------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence            0                  0122334578899999999999988899999999999999999999977777889999999


Q ss_pred             EEeccCCcCcccCchhhhCCC-CCCeeeCCCCcceecCCCC
Q 046668          240 SIDFSANQLYGEIPQSISSLT-FLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       240 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~  279 (381)
                      +|++++|.+++..|..+..++ +|+.|++++|+++|.|+..
T Consensus       227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            999999999988888888885 9999999999999988754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=5.1e-31  Score=263.62  Aligned_cols=157  Identities=24%  Similarity=0.278  Sum_probs=139.4

Q ss_pred             CccEEEcCCCcccc-----------------cCCcccc--CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-c
Q 046668            1 GIRILKLGENHFSG-----------------EIPDCWM--NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-L   60 (381)
Q Consensus         1 ~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l   60 (381)
                      +|++|+|++|.+++                 .+|..+.  ++++|++|+|++|.+.+.+|..|.++++|++|++++|. +
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            58999999999998                 3888877  99999999999999999999999999999999999998 8


Q ss_pred             ce-eCCccccCCC-------CCCEEeCcCCcCcccCCh--hHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccC
Q 046668           61 SG-QIPASFQNCT-------KLVMLDIGENEFVGNVPT--WIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLAD  130 (381)
Q Consensus        61 ~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  130 (381)
                      ++ .+|..+.+++       +|++|++++|.+. .+|.  .+. .+++|++|+|++|.++ .+| .+..+++|++|++++
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence            87 7887666554       9999999999998 8888  666 8999999999999999 777 899999999999999


Q ss_pred             CcCCCCcCcccccccc-cccccccCCccccCCC
Q 046668          131 NHLSGSIPKCISNISS-MVTANFSIGTDVQYPS  162 (381)
Q Consensus       131 n~l~~~~~~~~~~l~~-L~~l~~~~~~~~~~~~  162 (381)
                      |.+. .+|..+..+++ |+.|+++.+....+|.
T Consensus       605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~  636 (876)
T 4ecn_A          605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN  636 (876)
T ss_dssp             SCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred             Cccc-cchHHHhhccccCCEEECcCCCCCcCch
Confidence            9998 88888999998 9999999888776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=2.7e-30  Score=250.48  Aligned_cols=289  Identities=22%  Similarity=0.225  Sum_probs=183.5

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++..+..|.++++|++|+|++|.+++..|++|.++++|++|++++|.++ .+|..  .+++|++|+++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            4788888888888777778888888888888888888888888888888888888888888 45554  78888888888


Q ss_pred             CCcCcc-cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCC--CEEeccCCcC--CCCcCccccccc----------
Q 046668           81 ENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL--HVLDLADNHL--SGSIPKCISNIS----------  145 (381)
Q Consensus        81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~----------  145 (381)
                      +|++.+ .+|..+. .+++|++|++++|.+++.   .+..+++|  ++|++++|.+  .+..|..+..+.          
T Consensus       130 ~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  205 (562)
T 3a79_B          130 FNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP  205 (562)
T ss_dssp             SSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred             CCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence            888874 2345555 788888888888887643   23334444  7777777766  444444443322          


Q ss_pred             -----------------------------------------------------------------------ccccccccC
Q 046668          146 -----------------------------------------------------------------------SMVTANFSI  154 (381)
Q Consensus       146 -----------------------------------------------------------------------~L~~l~~~~  154 (381)
                                                                                             +|+.++++.
T Consensus       206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  285 (562)
T 3a79_B          206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN  285 (562)
T ss_dssp             SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred             ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence                                                                                   233333332


Q ss_pred             Cccc-cCCCCCC----------------------------------------------------CccccceEEEEecc--
Q 046668          155 GTDV-QYPSVST----------------------------------------------------GKYVEDALLVLKGK--  179 (381)
Q Consensus       155 ~~~~-~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~--  179 (381)
                      +... ..|....                                                    ..........+.+.  
T Consensus       286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l  365 (562)
T 3a79_B          286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF  365 (562)
T ss_dssp             EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred             cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence            2221 1111100                                                    11111222222222  


Q ss_pred             ---ccchhhhcccccEEEccCCcccccC--chhhhccccCcEEeCCCcccccccCh-hhhccCCCCEEeccCCcCcccCc
Q 046668          180 ---AVEYNTILKLMRLIDLSKNKFSGEI--PSEIMNLRALVSLDLSCNSFTGRIPN-SIGALESILSIDFSANQLYGEIP  253 (381)
Q Consensus       180 ---~~~~~~~~~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~  253 (381)
                         .+..+..+++|+.|++++|++++..  |..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++.+|
T Consensus       366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred             ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence               2333456778888888888887533  45677888888888888888763443 46666777777777777765544


Q ss_pred             hhhhCCCCCCeeeCCCCcceecCCC-CCCCCccCCCcccCCCCCCCC
Q 046668          254 QSISSLTFLSRLKLSNNNLSGKIPL-STQLQSFDPSSFTGNRLCGSP  299 (381)
Q Consensus       254 ~~l~~l~~L~~L~l~~N~l~~~~~~-~~~l~~l~~~~~~~n~l~~~~  299 (381)
                      ..+.  ++|+.|++++|+++ .+|. ...++.++.+++.+|.+.+.|
T Consensus       446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred             hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence            4332  46666666666665 3332 234555666666666555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=4.9e-31  Score=238.01  Aligned_cols=223  Identities=20%  Similarity=0.250  Sum_probs=133.3

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..|.++++|++|++++|.++ .+|..+.++++|++|++++
T Consensus        83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence            344555555554 44444444555555555555554 44444555555555555555554 4444555555555555555


Q ss_pred             CcCcccCChhHHh--------cCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccccccccc
Q 046668           82 NEFVGNVPTWIGI--------RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFS  153 (381)
Q Consensus        82 n~l~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~  153 (381)
                      |.+.+.+|..+..        .+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+            
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l------------  225 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI------------  225 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG------------
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh------------
Confidence            4444444443320        2444555555555444 34444444445555555554444 222222            


Q ss_pred             CCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhh
Q 046668          154 IGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIG  233 (381)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  233 (381)
                                                     ..+++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus       226 -------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          226 -------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             -------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             -------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence                                           2255577788888877777777788888888888888877777887788


Q ss_pred             ccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcc
Q 046668          234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNL  272 (381)
Q Consensus       234 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l  272 (381)
                      .+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus       275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            888888888888888778888888888888887776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.8e-31  Score=243.78  Aligned_cols=257  Identities=19%  Similarity=0.240  Sum_probs=139.3

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      |++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  133 (353)
T 2z80_A           54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG  133 (353)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred             CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC
Confidence            44455555554443333444455555555555555444444455555555555555554433333344455555555555


Q ss_pred             CcCcccCCh-hHHhcCCCCcEEEcccc-cccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           82 NEFVGNVPT-WIGIRFSSLMILNLRSN-KFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        82 n~l~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      |++. .+|. ..+..+++|++|++++| .+....+..+.++++|++|++++|.+.+..|..+..+++|+.++++.+....
T Consensus       134 n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          134 NPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             CCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            5444 3333 22224445555555544 2333334444445555555555555444444444444444444444433211


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhh---ccccCcEEeCCCccccc----ccChhh
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM---NLRALVSLDLSCNSFTG----RIPNSI  232 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~----~~~~~~  232 (381)
                      .                   .......+++|+.|++++|++++..+..+.   ....++.++++++.+.+    .+|..+
T Consensus       213 ~-------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l  273 (353)
T 2z80_A          213 L-------------------LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL  273 (353)
T ss_dssp             H-------------------HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred             c-------------------hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence            0                   011123356777777777777655443322   34556666666666654    356678


Q ss_pred             hccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668          233 GALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       233 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  278 (381)
                      ..+++|++|++++|.++...+..+..+++|++|++++|++.|.||.
T Consensus       274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            8889999999999999844334458889999999999999988874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1.9e-31  Score=266.69  Aligned_cols=286  Identities=21%  Similarity=0.278  Sum_probs=222.1

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCc-Ccc-cCCccCCC-------CCCCCEEEccCCccceeCCc--ccc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNN-FTG-NIPISLGM-------LSSLQSLNLRKNSLSGQIPA--SFQ   69 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~--~~~   69 (381)
                      +|++|+|++|.+.+.+|..|.++++|++|+|++|+ +++ .+|..+..       +++|++|++++|.++ .+|.  .|.
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~  570 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ  570 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred             CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence            58999999999999999999999999999999998 887 67765544       459999999999999 7888  899


Q ss_pred             CCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCC-CCEEeccCCcCCCCcCcccccccc--
Q 046668           70 NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTS-LHVLDLADNHLSGSIPKCISNISS--  146 (381)
Q Consensus        70 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--  146 (381)
                      ++++|++|++++|.+. .+| .+. .+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..+..  
T Consensus       571 ~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~  645 (876)
T 4ecn_A          571 KMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV  645 (876)
T ss_dssp             TCTTCCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred             cCCCCCEEECCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence            9999999999999998 888 554 7899999999999999 78888999999 999999999998 78888877654  


Q ss_pred             cccccccCCccccCC-CCC----CCccccceEEEEeccccc-----hhhhcccccEEEccCCcccccCchh-hhc-----
Q 046668          147 MVTANFSIGTDVQYP-SVS----TGKYVEDALLVLKGKAVE-----YNTILKLMRLIDLSKNKFSGEIPSE-IMN-----  210 (381)
Q Consensus       147 L~~l~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~L~~n~~~~~~~~~-~~~-----  210 (381)
                      |+.++++.+...... ...    ...........+.++.+.     ....+++|+.|++++|++. .+|.. +..     
T Consensus       646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l  724 (876)
T 4ecn_A          646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY  724 (876)
T ss_dssp             EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred             CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence            999999888765432 111    111112333333333222     2235678888888888887 44443 322     


Q ss_pred             --cccCcEEeCCCcccccccChhhh--ccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCC------CcceecCCCC-
Q 046668          211 --LRALVSLDLSCNSFTGRIPNSIG--ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN------NNLSGKIPLS-  279 (381)
Q Consensus       211 --l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------N~l~~~~~~~-  279 (381)
                        +++|++|+|++|.++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|++++      |++.+.+|.. 
T Consensus       725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence              338888888888888 7777776  78888888888888886 677778888888888866      6666666653 


Q ss_pred             CCCCccCCCcccCCCC
Q 046668          280 TQLQSFDPSSFTGNRL  295 (381)
Q Consensus       280 ~~l~~l~~~~~~~n~l  295 (381)
                      ..++.|+.+++++|.+
T Consensus       803 ~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             GGCSSCCEEECCSSCC
T ss_pred             hcCCCCCEEECCCCCC
Confidence            4567777888888876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.5e-30  Score=239.51  Aligned_cols=279  Identities=17%  Similarity=0.141  Sum_probs=202.9

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence            48899999999998777889999999999999999998888889999999999999999986656667999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCC------------------CcCcccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG------------------SIPKCIS  142 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~  142 (381)
                      +|++.+..+..+. .+++|++|++++|.+++..   +..+++|++|++++|.+.+                  .+|.  .
T Consensus       150 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~  223 (390)
T 3o6n_A          150 NNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--P  223 (390)
T ss_dssp             SSCCCBCCTTTTS-SCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--C
T ss_pred             CCccCccChhhcc-CCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--c
Confidence            9999844444444 7899999999999988542   3334444444444444331                  1111  1


Q ss_pred             cccccccccccCCccccCCCCCCCccccceEEEEecc-----ccchhhhcccccEEEccCCcccccCchhhhccccCcEE
Q 046668          143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK-----AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSL  217 (381)
Q Consensus       143 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  217 (381)
                      ..++|+.++++.+.....+....  ........+.+.     ....+..+++|+.|++++|++++ +|..+..+++|++|
T Consensus       224 ~~~~L~~L~l~~n~l~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L  300 (390)
T 3o6n_A          224 VNVELTILKLQHNNLTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL  300 (390)
T ss_dssp             CCSSCCEEECCSSCCCCCGGGGG--CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEE
T ss_pred             ccccccEEECCCCCCcccHHHcC--CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEE
Confidence            12355555555555443322111  112222222222     23456678999999999999985 45666889999999


Q ss_pred             eCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC
Q 046668          218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN  293 (381)
Q Consensus       218 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n  293 (381)
                      ++++|.+. .+|..+..+++|++|++++|.++.. +  +..+++|+.|++++|++.|.+.. ..+..+....+.++
T Consensus       301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~  371 (390)
T 3o6n_A          301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDA  371 (390)
T ss_dssp             ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCC
T ss_pred             ECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhccccc
Confidence            99999999 6777788999999999999999854 3  66788999999999999987543 23334444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=251.31  Aligned_cols=138  Identities=22%  Similarity=0.235  Sum_probs=121.4

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|++++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus        53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  132 (570)
T 2z63_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (570)
T ss_dssp             SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred             CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence            48999999999998888889999999999999999998888999999999999999999987666679999999999999


Q ss_pred             CCcCcc-cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCC----CEEeccCCcCCCCcCc
Q 046668           81 ENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL----HVLDLADNHLSGSIPK  139 (381)
Q Consensus        81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~  139 (381)
                      +|.+.+ .+|..+. .+++|++|++++|.+++..+..+..+++|    ++|++++|.+.+..+.
T Consensus       133 ~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~  195 (570)
T 2z63_A          133 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG  195 (570)
T ss_dssp             SSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred             CCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence            999875 4687776 89999999999999998877888888888    8999999887654443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.9e-30  Score=251.73  Aligned_cols=284  Identities=17%  Similarity=0.141  Sum_probs=210.4

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            48899999999998888899999999999999999998888889999999999999999997767778999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCC------------------CcCcccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG------------------SIPKCIS  142 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~  142 (381)
                      +|.+.+..|..+. .+++|++|++++|.+++..   +..+++|++|++++|.+.+                  .++..  
T Consensus       156 ~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--  229 (597)
T 3oja_B          156 NNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--  229 (597)
T ss_dssp             SSCCCBCCTTTTT-TCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--
T ss_pred             CCcCCCCChhhhh-cCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--
Confidence            9999865555555 7999999999999988653   3334455555554444432                  11111  


Q ss_pred             cccccccccccCCccccCCCCCCCccccceEEEEec-----cccchhhhcccccEEEccCCcccccCchhhhccccCcEE
Q 046668          143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG-----KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSL  217 (381)
Q Consensus       143 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  217 (381)
                      ..++|+.++++.+.....+....  ........+.+     ..+..+..+++|+.|++++|.+++ +|..+..+++|+.|
T Consensus       230 ~~~~L~~L~L~~n~l~~~~~l~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L  306 (597)
T 3oja_B          230 VNVELTILKLQHNNLTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL  306 (597)
T ss_dssp             CCSCCCEEECCSSCCCCCGGGGG--CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred             cCCCCCEEECCCCCCCCChhhcc--CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence            11345555555544433221111  11122222222     233456678999999999999986 56667889999999


Q ss_pred             eCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC-CCC
Q 046668          218 DLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN-RLC  296 (381)
Q Consensus       218 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n-~l~  296 (381)
                      +|++|.+. .+|..+..+++|++|++++|.+++. +  +..+++|+.|++++|++.|.+.. ..+..+....+.++ ..|
T Consensus       307 ~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C  381 (597)
T 3oja_B          307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHC  381 (597)
T ss_dssp             ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCC
T ss_pred             ECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccC
Confidence            99999999 7888889999999999999999854 3  56788999999999999997643 23445555555555 566


Q ss_pred             CC
Q 046668          297 GS  298 (381)
Q Consensus       297 ~~  298 (381)
                      +.
T Consensus       382 ~~  383 (597)
T 3oja_B          382 KI  383 (597)
T ss_dssp             CT
T ss_pred             Cc
Confidence            65

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=9.1e-30  Score=244.59  Aligned_cols=286  Identities=19%  Similarity=0.223  Sum_probs=184.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccce-eCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L   79 (381)
                      +|++|++++|++++..|+.|.++++|++|+|++|.+++ +|..  .+++|++|++++|.+++ ..|..|.++++|++|++
T Consensus        46 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L  122 (520)
T 2z7x_B           46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL  122 (520)
T ss_dssp             TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred             cccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence            58999999999998889999999999999999999994 5555  79999999999999986 46899999999999999


Q ss_pred             cCCcCcccCChhHHhcCCCC--cEEEcccccc--cccCCcCccCCC----------------------------------
Q 046668           80 GENEFVGNVPTWIGIRFSSL--MILNLRSNKF--RGVLPNQLCGLT----------------------------------  121 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~----------------------------------  121 (381)
                      ++|.+.+   ..+. .+++|  ++|++++|.+  .+..|..+..+.                                  
T Consensus       123 ~~n~l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~  198 (520)
T 2z7x_B          123 STTHLEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK  198 (520)
T ss_dssp             EESSCCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred             cCcccch---hhcc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence            9999874   2232 56777  8888888877  444454444422                                  


Q ss_pred             -------------------------------------------------CCCEEeccCCcCCCCcCccc-----cccccc
Q 046668          122 -------------------------------------------------SLHVLDLADNHLSGSIPKCI-----SNISSM  147 (381)
Q Consensus       122 -------------------------------------------------~L~~L~L~~n~l~~~~~~~~-----~~l~~L  147 (381)
                                                                       +|++|++++|.+.+.+|..+     ..+++|
T Consensus       199 ~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L  278 (520)
T 2z7x_B          199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL  278 (520)
T ss_dssp             ECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred             ccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence                                                             57777777777777777766     566666


Q ss_pred             ccccccCCccccCCC------------------------CC-CCccccceEEEEecc-----ccchhhhcccccEEEccC
Q 046668          148 VTANFSIGTDVQYPS------------------------VS-TGKYVEDALLVLKGK-----AVEYNTILKLMRLIDLSK  197 (381)
Q Consensus       148 ~~l~~~~~~~~~~~~------------------------~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~L~~L~L~~  197 (381)
                      +.++++.+.. .+|.                        .. ...........+.+.     .+..+..+++|+.|++++
T Consensus       279 ~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  357 (520)
T 2z7x_B          279 SIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM  357 (520)
T ss_dssp             EEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred             Eeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence            5555544433 2220                        00 011111222222222     233344566677777777


Q ss_pred             Ccccc--cCchhhhccccCcEEeCCCcccccccCh-hhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668          198 NKFSG--EIPSEIMNLRALVSLDLSCNSFTGRIPN-SIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       198 n~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                      |++++  ..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+.  ++|+.|++++|+++ 
T Consensus       358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-  434 (520)
T 2z7x_B          358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-  434 (520)
T ss_dssp             SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-
T ss_pred             CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-
Confidence            77664  3445566677777777777776653443 255556666666666666544444332  45555555555555 


Q ss_pred             cCCC-CCCCCccCCCcccCCCCCC
Q 046668          275 KIPL-STQLQSFDPSSFTGNRLCG  297 (381)
Q Consensus       275 ~~~~-~~~l~~l~~~~~~~n~l~~  297 (381)
                      .+|. ...++.++.+++.+|.+..
T Consensus       435 ~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          435 SIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             ccchhhhcCCCCCEEECCCCcCCc
Confidence            3332 2344455555555554443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=7.8e-31  Score=253.71  Aligned_cols=271  Identities=21%  Similarity=0.209  Sum_probs=187.0

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccce-eCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L   79 (381)
                      +|++|++++|++++..|++|.++++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|..+.++++|++|++
T Consensus        51 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  130 (549)
T 2z81_A           51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI  130 (549)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred             cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEEC
Confidence            58999999999998888999999999999999999998888889999999999999999986 35678999999999999


Q ss_pred             cCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcc-cccccccccccccCCccc
Q 046668           80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC-ISNISSMVTANFSIGTDV  158 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~~~~~~~~  158 (381)
                      ++|...+.+|...+..+++|++|++++|.+++..|..+..+++|++|+++.|.+. .+|.. +..+++|+.++++.+...
T Consensus       131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred             CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccc
Confidence            9998655777544448999999999999999888888887777666666666654 23322 233455555555444333


Q ss_pred             cCCC-------------------------------------------------------CCC------Ccc---------
Q 046668          159 QYPS-------------------------------------------------------VST------GKY---------  168 (381)
Q Consensus       159 ~~~~-------------------------------------------------------~~~------~~~---------  168 (381)
                      ..+.                                                       ...      ...         
T Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  289 (549)
T 2z81_A          210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR  289 (549)
T ss_dssp             TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred             cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence            2110                                                       000      000         


Q ss_pred             --------------------ccceEEEEeccc----cch-hhhcccccEEEccCCcccccCch---hhhccccCcEEeCC
Q 046668          169 --------------------VEDALLVLKGKA----VEY-NTILKLMRLIDLSKNKFSGEIPS---EIMNLRALVSLDLS  220 (381)
Q Consensus       169 --------------------~~~~~~~~~~~~----~~~-~~~~~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~Ls  220 (381)
                                          .......+.+..    +.. ...+++|+.|++++|++.+..|.   .++.+++|++|+++
T Consensus       290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls  369 (549)
T 2z81_A          290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS  369 (549)
T ss_dssp             SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred             ccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence                                000111111111    111 13567788888888887765543   25667777777777


Q ss_pred             CcccccccC--hhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcce
Q 046668          221 CNSFTGRIP--NSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLS  273 (381)
Q Consensus       221 ~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~  273 (381)
                      +|.+++..+  ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus       370 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             TSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             CCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence            777764322  34666777777777777776 45655666666666666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=5.4e-30  Score=251.89  Aligned_cols=113  Identities=20%  Similarity=0.235  Sum_probs=99.7

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|+|++|+|+++.+++|.++++|++|+|++|++++..+.+|.++++|++|++++|.+++..+..|+++++|++|+++
T Consensus        77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls  156 (635)
T 4g8a_A           77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  156 (635)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence            58999999999998888899999999999999999998888899999999999999999998777889999999999999


Q ss_pred             CCcCcc-cCChhHHhcCCCCcEEEcccccccccCC
Q 046668           81 ENEFVG-NVPTWIGIRFSSLMILNLRSNKFRGVLP  114 (381)
Q Consensus        81 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~  114 (381)
                      +|.+.+ .+|..+. .+++|++|++++|.+++..+
T Consensus       157 ~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          157 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             SSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECG
T ss_pred             cCccccCCCchhhc-cchhhhhhcccCcccccccc
Confidence            999874 3455555 79999999999988765433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=4.5e-29  Score=227.42  Aligned_cols=278  Identities=20%  Similarity=0.291  Sum_probs=169.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|+++++.++. ++ .+..+++|++|++++|.+++..+  |.++++|++|++++|.++. + .++.++++|++|+++
T Consensus        45 ~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           45 SITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLN  118 (347)
T ss_dssp             TCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECT
T ss_pred             cccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECc
Confidence            46788888888774 33 37778888888888888874433  7788888888888888774 3 358888888888888


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|.+. .++. +. .+++|++|++++|..... ...+..+++|++|++++|.+.+..+  +..+++|+.++++.+.....
T Consensus       119 ~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          119 EDNIS-DISP-LA-NLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             TSCCC-CCGG-GT-TCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred             CCccc-Cchh-hc-cCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence            88876 4444 33 678888888888755433 3347777778888888777764332  66777777777777665544


Q ss_pred             CCCCCCccccceEEEEeccc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668          161 PSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES  237 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  237 (381)
                      +....  ........+.+..   ...+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ + ..+..+++
T Consensus       193 ~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~  266 (347)
T 4fmz_A          193 SPLAS--LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTK  266 (347)
T ss_dssp             GGGGG--CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTT
T ss_pred             ccccC--CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCC
Confidence            43111  1111122221111   1114445666666666666654333  5566666666666666653 2 23555566


Q ss_pred             CCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCCCCCCC
Q 046668          238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGNRLCGS  298 (381)
Q Consensus       238 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n~l~~~  298 (381)
                      |++|++++|.+++.  +.+..+++|+.|++++|++.+..+.. ..++.++.+++.+|.+.+.
T Consensus       267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            66666666665532  23455556666666666555433321 2344555555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=3.4e-30  Score=228.27  Aligned_cols=234  Identities=18%  Similarity=0.239  Sum_probs=199.0

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-cceeCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-LSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L   79 (381)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|. +....|..|.++++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            47899999999998877889999999999999999998889999999999999999997 88777899999999999999


Q ss_pred             cCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      ++|++.+..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..                
T Consensus       113 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------  175 (285)
T 1ozn_A          113 DRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG----------------  175 (285)
T ss_dssp             TTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT----------------
T ss_pred             CCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC----------------
Confidence            99999854455444 7999999999999999777777999999999999999988443334443                


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                                                 +++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       176 ---------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          176 ---------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             ---------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence                                       45588999999999988899999999999999999999976667799999999


Q ss_pred             EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668          240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  279 (381)
                      +|++++|.+....+. ......++.+..+.+.+.|..|..
T Consensus       229 ~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          229 YLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             EEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGG
T ss_pred             EEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchH
Confidence            999999999754332 111234566667888888888753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=2e-29  Score=244.39  Aligned_cols=145  Identities=19%  Similarity=0.233  Sum_probs=127.0

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +++++++|++++ +|..+.  ++|++|++++|.+++..+.+|.++++|++|++++|.+++..|++|.++++|++|++++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            689999999995 776553  89999999999999888899999999999999999999988999999999999999999


Q ss_pred             cCcccCChhHHhcCCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcCCCCcCccccccccc--ccccccCCcc
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM--VTANFSIGTD  157 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~l~~~~~~~  157 (381)
                      ++. .+|..   .+++|++|++++|.+++. .|..|.++++|++|++++|.+.+.   .+..+++|  +.++++.+..
T Consensus       111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            998 78876   689999999999999964 357899999999999999999853   45555555  8888777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.5e-29  Score=226.52  Aligned_cols=247  Identities=20%  Similarity=0.218  Sum_probs=207.0

Q ss_pred             CCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcc--cCChhHHhcCCCCcEEE
Q 046668           26 LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG--NVPTWIGIRFSSLMILN  103 (381)
Q Consensus        26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~  103 (381)
                      -+.++.+++.++ .+|..+.  ++|++|++++|.++...+..|.++++|++|++++|.+..  ..+..+. .+++|++|+
T Consensus         9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~   84 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLD   84 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEE
T ss_pred             CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-cccccCEEE
Confidence            367899999998 5666554  699999999999996666678999999999999999872  2355665 799999999


Q ss_pred             cccccccccCCcCccCCCCCCEEeccCCcCCCCcC-cccccccccccccccCCccccCCCCCCCccccceEEEEeccccc
Q 046668          104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP-KCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE  182 (381)
Q Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (381)
                      +++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|+.++++.+......                   ..
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~  144 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-------------------NG  144 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-------------------TT
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-------------------hh
Confidence            9999998 466678999999999999999986554 67899999999999887654322                   22


Q ss_pred             hhhhcccccEEEccCCcccc-cCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCC
Q 046668          183 YNTILKLMRLIDLSKNKFSG-EIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF  261 (381)
Q Consensus       183 ~~~~~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  261 (381)
                      .+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++
T Consensus       145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  224 (306)
T 2z66_A          145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS  224 (306)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred             hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence            23457889999999999986 57888999999999999999999888899999999999999999999877778899999


Q ss_pred             CCeeeCCCCcceecCCCC-CCC-CccCCCcccCCCCC
Q 046668          262 LSRLKLSNNNLSGKIPLS-TQL-QSFDPSSFTGNRLC  296 (381)
Q Consensus       262 L~~L~l~~N~l~~~~~~~-~~l-~~l~~~~~~~n~l~  296 (381)
                      |+.|++++|++++..+.. ..+ +.++.+++.+|.+.
T Consensus       225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            999999999999877653 344 47888888888653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2e-29  Score=227.45  Aligned_cols=222  Identities=22%  Similarity=0.274  Sum_probs=196.0

Q ss_pred             CCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEE
Q 046668           23 WLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL  102 (381)
Q Consensus        23 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  102 (381)
                      ..+++.|+|++|.++ .+|..+.++++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+. .+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEE
Confidence            478999999999998 77888888999999999999999 88999999999999999999998 8898877 89999999


Q ss_pred             EcccccccccCCcCccC---------CCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceE
Q 046668          103 NLRSNKFRGVLPNQLCG---------LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDAL  173 (381)
Q Consensus       103 ~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~  173 (381)
                      ++++|.+.+.+|..+..         +++|++|++++|.++ .+|..+..                              
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~------------------------------  204 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN------------------------------  204 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG------------------------------
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC------------------------------
Confidence            99998888788877654         899999999999988 66766554                              


Q ss_pred             EEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCc
Q 046668          174 LVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIP  253 (381)
Q Consensus       174 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  253 (381)
                                   +++|+.|++++|.+++ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|
T Consensus       205 -------------l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          205 -------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             -------------CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             -------------CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence                         4458889999999985 56679999999999999999999999999999999999999999999999


Q ss_pred             hhhhCCCCCCeeeCCCCcceecCCCC-CCCCccCCCcccCC
Q 046668          254 QSISSLTFLSRLKLSNNNLSGKIPLS-TQLQSFDPSSFTGN  293 (381)
Q Consensus       254 ~~l~~l~~L~~L~l~~N~l~~~~~~~-~~l~~l~~~~~~~n  293 (381)
                      ..+..+++|++|++++|++.+.+|.. ..++.+..+.+..+
T Consensus       271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            99999999999999999999999864 45666666655555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=3.3e-28  Score=221.69  Aligned_cols=276  Identities=22%  Similarity=0.327  Sum_probs=224.1

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++.. . +.++++|++|++++|.+++.  ++|.++++|++|++++|.+.+. +. +.++++|++|+++
T Consensus        67 ~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~  140 (347)
T 4fmz_A           67 NLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLG  140 (347)
T ss_dssp             TCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECT
T ss_pred             CccEEEccCCccccch-h-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECC
Confidence            5899999999998543 3 89999999999999999853  3689999999999999999854 33 8999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|.....++. +. .+++|++|++++|.+.+..+  +..+++|++|++++|.+.+. +. +..+++|+.++++.+.....
T Consensus       141 ~n~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          141 ANHNLSDLSP-LS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             TCTTCCCCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCcccccc-hh-hCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCC
Confidence            9976645544 44 79999999999999885533  88999999999999999854 33 88899999999988876655


Q ss_pred             CCCCCCccccceEEEEeccc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668          161 PSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES  237 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  237 (381)
                      +...  .........+.+..   ...+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++ + ..+..+++
T Consensus       215 ~~~~--~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~  288 (347)
T 4fmz_A          215 TPVA--NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQ  288 (347)
T ss_dssp             GGGG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTT
T ss_pred             chhh--cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCC
Confidence            4421  22223333333332   22266789999999999999854  468899999999999999985 4 45889999


Q ss_pred             CCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCC
Q 046668          238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRL  295 (381)
Q Consensus       238 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l  295 (381)
                      |++|++++|.+++..+..+..+++|+.|++++|++++..| ...++.++.+++.+|.+
T Consensus       289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            9999999999998888999999999999999999988766 56688888888888865

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.96  E-value=3.3e-28  Score=214.42  Aligned_cols=229  Identities=23%  Similarity=0.219  Sum_probs=190.5

Q ss_pred             EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc
Q 046668            4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE   83 (381)
Q Consensus         4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   83 (381)
                      ..+-.+..++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.
T Consensus        11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            3455555665 5666543  579999999999998888899999999999999999998888899999999999999999


Q ss_pred             CcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCC-cCcccccccccccccccCCccccCCC
Q 046668           84 FVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS-IPKCISNISSMVTANFSIGTDVQYPS  162 (381)
Q Consensus        84 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~  162 (381)
                      +.+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..                   
T Consensus        88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-------------------  147 (276)
T 2z62_A           88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-------------------  147 (276)
T ss_dssp             CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-------------------
T ss_pred             cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-------------------
Confidence            9854444444 899999999999999977777899999999999999998753 4655544                   


Q ss_pred             CCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCc----EEeCCCcccccccChhhhccCCC
Q 046668          163 VSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALV----SLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                                              +++|+.|++++|++++..+..+..+++|+    +|++++|.+++..+..+ ...+|
T Consensus       148 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L  202 (276)
T 2z62_A          148 ------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRL  202 (276)
T ss_dssp             ------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCE
T ss_pred             ------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcc
Confidence                                    45588899999999988888888888887    89999999995555544 44589


Q ss_pred             CEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCC
Q 046668          239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLST  280 (381)
Q Consensus       239 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  280 (381)
                      ++|++++|.+++..+..+..+++|+.|++++|++.|.|+...
T Consensus       203 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             cEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence            999999999997777778899999999999999999998653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=224.91  Aligned_cols=270  Identities=18%  Similarity=0.162  Sum_probs=220.2

Q ss_pred             EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc
Q 046668            4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE   83 (381)
Q Consensus         4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   83 (381)
                      ..+.+++.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|+
T Consensus        35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            4678888888 5676654  589999999999998877799999999999999999998888999999999999999999


Q ss_pred             CcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCc-CCCCcCcccccccccccccccCCccccCC
Q 046668           84 FVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNH-LSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        84 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      +. .+|...+..+++|++|++++|.++...+ ..+..+++|++|++++|. +....+..+..+++|+.++++.+......
T Consensus       112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (353)
T 2z80_A          112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE  190 (353)
T ss_dssp             CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence            98 6777755589999999999999995444 478999999999999994 66556778999999999998877654321


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhh---hccCCC
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSI---GALESI  238 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L  238 (381)
                                         ...+..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+   ...+.+
T Consensus       191 -------------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l  251 (353)
T 2z80_A          191 -------------------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI  251 (353)
T ss_dssp             -------------------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred             -------------------HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence                               2233457789999999999875554556678999999999999986554433   245678


Q ss_pred             CEEeccCCcCcc----cCchhhhCCCCCCeeeCCCCcceecCCCC--CCCCccCCCcccCCCCCC
Q 046668          239 LSIDFSANQLYG----EIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPSSFTGNRLCG  297 (381)
Q Consensus       239 ~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--~~l~~l~~~~~~~n~l~~  297 (381)
                      +.++++++.+.+    .+|..+..+++|+.|++++|+++ .+|..  ..++.++.+++.+|.+.+
T Consensus       252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            899999998875    46778899999999999999998 55543  567888999999996544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=6.5e-28  Score=228.40  Aligned_cols=283  Identities=20%  Similarity=0.308  Sum_probs=161.4

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++..+  +.++++|++|++++|.+.+..+  +.++++|++|++++|.+++..+  +.++++|++|+++
T Consensus        69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  142 (466)
T 1o6v_A           69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS  142 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEE
T ss_pred             CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECC
Confidence            46778888887775433  7777777777777777774443  6777777777777777764322  6666666666666


Q ss_pred             CCcCcccCChh-------------------HHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccc
Q 046668           81 ENEFVGNVPTW-------------------IGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI  141 (381)
Q Consensus        81 ~n~l~~~~~~~-------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  141 (381)
                      +|.+.+ ++..                   ....+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|  +
T Consensus       143 ~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  217 (466)
T 1o6v_A          143 SNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L  217 (466)
T ss_dssp             EEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--c
Confidence            665542 2210                   012455666666666666532  235555666666666666554333  4


Q ss_pred             ccccccccccccCCccccCCCCCC--------------------CccccceEEEEeccc---cchhhhcccccEEEccCC
Q 046668          142 SNISSMVTANFSIGTDVQYPSVST--------------------GKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKN  198 (381)
Q Consensus       142 ~~l~~L~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n  198 (381)
                      +.+++|+.++++.+.....+....                    ..........+.+..   ...+..++.|+.|++++|
T Consensus       218 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN  297 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC
Confidence            444555555554444332221110                    011111122221111   111344556666666666


Q ss_pred             cccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668          199 KFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       199 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  278 (381)
                      ++.+..+  +..+++|++|++++|.+++..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..| 
T Consensus       298 ~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  370 (466)
T 1o6v_A          298 QLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-  370 (466)
T ss_dssp             CCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred             cccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-
Confidence            6654333  5566666666666666664443  55667777777777766643  346667777777777777776665 


Q ss_pred             CCCCCccCCCcccCCCCCCCCCC
Q 046668          279 STQLQSFDPSSFTGNRLCGSPLP  301 (381)
Q Consensus       279 ~~~l~~l~~~~~~~n~l~~~~~~  301 (381)
                      ...++.++.+++.+|.+.+.|..
T Consensus       371 ~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          371 LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             GTTCTTCCEEECCCEEEECCCBC
T ss_pred             hhcCCCCCEEeccCCcccCCchh
Confidence            45566677777777766665544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=4e-28  Score=229.81  Aligned_cols=256  Identities=23%  Similarity=0.326  Sum_probs=178.0

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +++.|+++++.++. +| .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+..+  +.++++|++|+++
T Consensus        47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  120 (466)
T 1o6v_A           47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  120 (466)
T ss_dssp             TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence            47899999999884 55 48889999999999999986544  8999999999999999986544  9999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCC-------------------cCccCCCCCCEEeccCCcCCCCcCccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-------------------NQLCGLTSLHVLDLADNHLSGSIPKCI  141 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~  141 (381)
                      +|.+. .++. +. .+++|++|++++|.+.+...                   ..+..+++|++|++++|.+.+.  ..+
T Consensus       121 ~n~l~-~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l  195 (466)
T 1o6v_A          121 NNQIT-DIDP-LK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVL  195 (466)
T ss_dssp             SSCCC-CCGG-GT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             CCCCC-CChH-Hc-CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhh
Confidence            99998 4554 43 89999999999998874311                   1366788999999999998743  458


Q ss_pred             ccccccccccccCCccccCCCCCCCccccceEEEEeccc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEe
Q 046668          142 SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLD  218 (381)
Q Consensus       142 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  218 (381)
                      ..+++|+.++++.+.....+....  ........+.+..   ...+..+++|+.|++++|.+.+..+  +..+++|++|+
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~~~~--l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  271 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK  271 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGGG--CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             ccCCCCCEEEecCCcccccccccc--cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence            899999999999887665443211  2222223332222   2334556677777777777664443  56666666666


Q ss_pred             CCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceec
Q 046668          219 LSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGK  275 (381)
Q Consensus       219 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  275 (381)
                      +++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++++.
T Consensus       272 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred             CCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence            66666653322  4555555555555555553322  44455555555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.2e-29  Score=239.14  Aligned_cols=219  Identities=17%  Similarity=0.121  Sum_probs=171.5

Q ss_pred             CCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEE
Q 046668           23 WLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL  102 (381)
Q Consensus        23 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  102 (381)
                      +++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|  |.++++|++|++++|.+. .+|     ..++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCEE
Confidence            3478888888888887777788888888888888888876554  788888888888888876 333     24788888


Q ss_pred             EcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccc
Q 046668          103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE  182 (381)
Q Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (381)
                      ++++|.+.+..+.   .+++|++|++++|.+++..|..++.+++|+.|+++.+.....+                   +.
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------~~  162 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------------------FA  162 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-------------------GG
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-------------------hH
Confidence            8888888866543   3577888888888888777778888888888888777644211                   11


Q ss_pred             hh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCC
Q 046668          183 YN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF  261 (381)
Q Consensus       183 ~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  261 (381)
                      .+ ..++.|+.|++++|.+++..+  ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~  238 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN  238 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred             HHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence            22 246789999999999986633  3458999999999999995 55558899999999999999995 6777888999


Q ss_pred             CCeeeCCCCcceec
Q 046668          262 LSRLKLSNNNLSGK  275 (381)
Q Consensus       262 L~~L~l~~N~l~~~  275 (381)
                      |+.|++++|++.|.
T Consensus       239 L~~L~l~~N~l~c~  252 (487)
T 3oja_A          239 LEHFDLRGNGFHCG  252 (487)
T ss_dssp             CCEEECTTCCBCHH
T ss_pred             CCEEEcCCCCCcCc
Confidence            99999999999854

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3.9e-28  Score=229.02  Aligned_cols=227  Identities=22%  Similarity=0.222  Sum_probs=201.2

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|+|++|++++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            47899999999999889999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEccc-ccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRS-NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      +|++. .+|...+..+++|++|++++ +.+....+..|.++++|++|++++|.+++ +| .+..+++|+.|+++.+....
T Consensus       156 ~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            99998 66666565899999999998 55665555679999999999999999984 44 58889999999998887543


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                      .+                   ...+..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+
T Consensus       233 ~~-------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          233 IR-------------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             EC-------------------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             cC-------------------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            22                   23345678899999999999999999999999999999999999977777889999999


Q ss_pred             EEeccCCcCc
Q 046668          240 SIDFSANQLY  249 (381)
Q Consensus       240 ~L~L~~n~l~  249 (381)
                      +|++++|.+.
T Consensus       294 ~L~L~~Np~~  303 (452)
T 3zyi_A          294 ELHLHHNPWN  303 (452)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEccCCCcC
Confidence            9999999876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=1.1e-29  Score=228.34  Aligned_cols=264  Identities=16%  Similarity=0.138  Sum_probs=200.8

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ++..+++.+.+.......+..+++|++|+|++|.+++..|..|.++++|++|++++|.+++..+  +.++++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3455666666665555556677889999999999988777889999999999999999886554  88999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |++. .++     ..++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|+.++++.+.....+
T Consensus        90 n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           90 NYVQ-ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SEEE-EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             Cccc-ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            9887 343     3578999999999988665443   578999999999998777778888999999998887654321


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI  241 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  241 (381)
                      .                  ......++.|+.|++++|.+++..+  ...+++|++|++++|.++ .+|..+..+++|++|
T Consensus       161 ~------------------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L  219 (317)
T 3o53_A          161 F------------------AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI  219 (317)
T ss_dssp             G------------------GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred             H------------------HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence            1                  1111346789999999999986532  335899999999999999 555568899999999


Q ss_pred             eccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC--CCCCccCCCcccCC-CCCCC
Q 046668          242 DFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPSSFTGN-RLCGS  298 (381)
Q Consensus       242 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--~~l~~l~~~~~~~n-~l~~~  298 (381)
                      ++++|.++ .+|..+..+++|+.|++++|++.|.+...  ..++.++.+.+.++ .+.|.
T Consensus       220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            99999998 56777888999999999999998543221  33445555555544 44443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=4.8e-28  Score=227.60  Aligned_cols=227  Identities=21%  Similarity=0.213  Sum_probs=200.5

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +++.|+|++|++++..+..|.++++|++|+|++|.++++.+.+|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            47899999999998888999999999999999999998888999999999999999999997777889999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEccc-ccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRS-NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      +|++. .++...+..+++|++|++++ +.+....+..|.++++|++|++++|.++ .+| .+..+++|+.|+++.+....
T Consensus       145 ~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence            99998 66665555899999999998 5556555668999999999999999998 555 48889999999999887654


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                      .+.                   ..+..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+
T Consensus       222 ~~~-------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          222 IRP-------------------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             ECT-------------------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             cCh-------------------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence            322                   2334578899999999999999999999999999999999999977778889999999


Q ss_pred             EEeccCCcCc
Q 046668          240 SIDFSANQLY  249 (381)
Q Consensus       240 ~L~L~~n~l~  249 (381)
                      .|++++|.+.
T Consensus       283 ~L~L~~Np~~  292 (440)
T 3zyj_A          283 RIHLHHNPWN  292 (440)
T ss_dssp             EEECCSSCEE
T ss_pred             EEEcCCCCcc
Confidence            9999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.95  E-value=3.5e-27  Score=207.09  Aligned_cols=209  Identities=22%  Similarity=0.255  Sum_probs=178.1

Q ss_pred             CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668           24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN  103 (381)
Q Consensus        24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  103 (381)
                      .+.++++++++.++ .+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.+. .+|..++..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence            46788999999998 4666554  68999999999998777778999999999999999987 67777665789999999


Q ss_pred             cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccch
Q 046668          104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY  183 (381)
Q Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (381)
                      +++|.++...+..|..+++|++|++++|.+++..+..+..                                        
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------  131 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS----------------------------------------  131 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT----------------------------------------
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc----------------------------------------
Confidence            9999999777778889999999999999988655554444                                        


Q ss_pred             hhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCC
Q 046668          184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS  263 (381)
Q Consensus       184 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  263 (381)
                         +++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       132 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          132 ---LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             ---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ---CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence               45588899999999877777789999999999999999977777789999999999999999977777788999999


Q ss_pred             eeeCCCCcceecCCCC
Q 046668          264 RLKLSNNNLSGKIPLS  279 (381)
Q Consensus       264 ~L~l~~N~l~~~~~~~  279 (381)
                      .|++++|++.|.|+..
T Consensus       209 ~L~l~~N~~~c~c~~~  224 (270)
T 2o6q_A          209 MLQLQENPWDCTCNGI  224 (270)
T ss_dssp             EEECCSSCBCCSSSSS
T ss_pred             EEEecCCCeeCCCccH
Confidence            9999999999998743

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=8.8e-30  Score=228.48  Aligned_cols=242  Identities=21%  Similarity=0.277  Sum_probs=137.1

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCc-ccCCccCC-------CCCCCCEEEccCCccceeCCccc--cCC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFT-GNIPISLG-------MLSSLQSLNLRKNSLSGQIPASF--QNC   71 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~l   71 (381)
                      |+.|++++|.+  .+|..+...  |+.|+|++|.+. ...|..+.       ++++|++|++++|.+++..|..+  .++
T Consensus        45 L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           45 LEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             CTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             ceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            44555566666  455544443  666677777663 33444443       56777777777777776666655  677


Q ss_pred             CCCCEEeCcCCcCcccCChhHHhcC-----CCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCC--cCccc--c
Q 046668           72 TKLVMLDIGENEFVGNVPTWIGIRF-----SSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS--IPKCI--S  142 (381)
Q Consensus        72 ~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~  142 (381)
                      ++|++|++++|++.+. |..+. .+     ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  .+..+  .
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            7777777777777643 54444 34     6777777777777766666777777777777777765533  12222  3


Q ss_pred             cccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccccc---CchhhhccccCcEEeC
Q 046668          143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE---IPSEIMNLRALVSLDL  219 (381)
Q Consensus       143 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~---~~~~~~~l~~L~~L~L  219 (381)
                      .+                                           ++|+.|++++|++++.   ....+..+++|++|++
T Consensus       199 ~l-------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L  235 (312)
T 1wwl_A          199 KF-------------------------------------------PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL  235 (312)
T ss_dssp             SC-------------------------------------------TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred             cC-------------------------------------------CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence            33                                           4455555555555421   1122344555666666


Q ss_pred             CCcccccccC-hhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCC
Q 046668          220 SCNSFTGRIP-NSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLC  296 (381)
Q Consensus       220 s~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~  296 (381)
                      ++|.+++..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |....++.++.+++.+|.+.
T Consensus       236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             CCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence            6665554442 23344555666666666555 4444333  4555666666655544 33444555555555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2.2e-28  Score=219.89  Aligned_cols=244  Identities=18%  Similarity=0.173  Sum_probs=207.8

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|++++..|..|.++++|++|+|++|.+++..+  |..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence            47899999999998888899999999999999999986654  889999999999999998533     34899999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccc-ccccccccccccCCcccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCI-SNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~~~~~~~~~  159 (381)
                      +|.+.+..+.    .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.++++.+....
T Consensus       108 ~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             SSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            9999843332    46889999999999998878889999999999999999997777766 478999999999887654


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                      .+...                     .+++|+.|++++|++++..+ .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus       184 ~~~~~---------------------~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~  240 (317)
T 3o53_A          184 VKGQV---------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE  240 (317)
T ss_dssp             EECCC---------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred             ccccc---------------------ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence            32221                     26789999999999996544 5899999999999999999 6788899999999


Q ss_pred             EEeccCCcCc-ccCchhhhCCCCCCeeeCCCC-cceecCCC
Q 046668          240 SIDFSANQLY-GEIPQSISSLTFLSRLKLSNN-NLSGKIPL  278 (381)
Q Consensus       240 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~  278 (381)
                      +|++++|.+. +.+|.++..+++|+.++++++ .+.+..+.
T Consensus       241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            9999999998 778888999999999999954 55554443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=9.6e-27  Score=219.05  Aligned_cols=274  Identities=18%  Similarity=0.140  Sum_probs=194.0

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++. | .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  +.++++|++|+++
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence            478999999999964 5 688999999999999999864 3  88999999999999999864 3  8899999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++.+ +|  +. .+++|++|++++|.+++.   .+..+++|++|++++|...+.+  .+..+++|+.++++.+....+
T Consensus       115 ~N~l~~-l~--~~-~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          115 TNKLTK-LD--VS-QNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             SSCCSC-CC--CT-TCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCe-ec--CC-CCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence            999984 55  43 789999999999999964   3788899999999999655455  477888999999888876655


Q ss_pred             CCCCCCccccceEEEEeccccc--hhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccC--
Q 046668          161 PSVSTGKYVEDALLVLKGKAVE--YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE--  236 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--  236 (381)
                      + .  ..........+.+....  .+..+++|+.|++++|++++ +|  +..+++|+.|++++|.+++..+..+..++  
T Consensus       186 ~-l--~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L  259 (457)
T 3bz5_A          186 D-V--SQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL  259 (457)
T ss_dssp             C-C--TTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred             c-c--ccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence            4 1  11122222222222111  24456777777777777775 34  66777777777777777755443333333  


Q ss_pred             -----CCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC---------CCCCccCCCcccCCCCCCCC
Q 046668          237 -----SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS---------TQLQSFDPSSFTGNRLCGSP  299 (381)
Q Consensus       237 -----~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~---------~~l~~l~~~~~~~n~l~~~~  299 (381)
                           +|+.|++++|.+.+.+|  +..+++|+.|++++|+..+.+|..         ...+.++.+++.+|.+.+.+
T Consensus       260 ~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~  334 (457)
T 3bz5_A          260 HCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD  334 (457)
T ss_dssp             ECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             eccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc
Confidence                 34455555555444444  346678888888888766654431         22345556667777676654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=5.4e-29  Score=223.32  Aligned_cols=226  Identities=24%  Similarity=0.263  Sum_probs=185.6

Q ss_pred             ccEEEcCCCccc-ccCCcccc-------CCCCCCEEECcCCcCcccCCccC--CCCCCCCEEEccCCccceeCCccccCC
Q 046668            2 IRILKLGENHFS-GEIPDCWM-------NWLDLLVLNLGNNNFTGNIPISL--GMLSSLQSLNLRKNSLSGQIPASFQNC   71 (381)
Q Consensus         2 L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l   71 (381)
                      |++|++++|.++ ..+|..+.       ++++|++|+|++|.+++..|..+  ..+++|++|++++|.+++. |..+.++
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            567899999984 45666665       79999999999999998888876  8999999999999999976 8888887


Q ss_pred             -----CCCCEEeCcCCcCcccCChhHHhcCCCCcEEEccccccccc--CCcC--ccCCCCCCEEeccCCcCCCCcCcccc
Q 046668           72 -----TKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV--LPNQ--LCGLTSLHVLDLADNHLSGSIPKCIS  142 (381)
Q Consensus        72 -----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~  142 (381)
                           ++|++|++++|++.+..|..+. .+++|++|++++|.+.+.  .+..  +..+++|++|++++|.+++ ++....
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~  221 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCS  221 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHH
Confidence                 9999999999999855545555 899999999999997654  2333  3889999999999999872 111100


Q ss_pred             cccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCc-hhhhccccCcEEeCCC
Q 046668          143 NISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP-SEIMNLRALVSLDLSC  221 (381)
Q Consensus       143 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~  221 (381)
                                                             .....+++|+.|++++|++++..| ..+..+++|++|++++
T Consensus       222 ---------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~  262 (312)
T 1wwl_A          222 ---------------------------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF  262 (312)
T ss_dssp             ---------------------------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred             ---------------------------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence                                                   011235679999999999998775 4567789999999999


Q ss_pred             cccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668          222 NSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       222 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                      |.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       263 N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          263 TGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9999 7787766  8999999999999965 66 8899999999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.95  E-value=1.2e-26  Score=205.64  Aligned_cols=208  Identities=23%  Similarity=0.237  Sum_probs=180.1

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCC
Q 046668           20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSL   99 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   99 (381)
                      +.+++++++++++++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+. .++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            678899999999999998 5565554  68999999999999888899999999999999999998 44443  378999


Q ss_pred             cEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecc
Q 046668          100 MILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK  179 (381)
Q Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (381)
                      ++|++++|.++ .+|..+..+++|++|++++|++++..+..|..                                    
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------  122 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------  122 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT------------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC------------------------------------
Confidence            99999999998 67888899999999999999998655555554                                    


Q ss_pred             ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCC
Q 046668          180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL  259 (381)
Q Consensus       180 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  259 (381)
                             +++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+...
T Consensus       123 -------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~  194 (290)
T 1p9a_G          123 -------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (290)
T ss_dssp             -------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             -------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence                   445888999999999877888899999999999999999666667788999999999999999 677777888


Q ss_pred             CCCCeeeCCCCcceecCCC
Q 046668          260 TFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       260 ~~L~~L~l~~N~l~~~~~~  278 (381)
                      ++|+.+++++|++.|.|..
T Consensus       195 ~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          195 HLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCCSEEECCSCCBCCSGGG
T ss_pred             ccCCeEEeCCCCccCcCcc
Confidence            8999999999999998754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=1.1e-26  Score=204.61  Aligned_cols=210  Identities=22%  Similarity=0.219  Sum_probs=178.7

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            48999999999998877789999999999999999998888899999999999999999998888999999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEccccccccc-CCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      +|.+.+..+..+. .+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+.+++           
T Consensus       109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-----------  176 (276)
T 2z62_A          109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP-----------  176 (276)
T ss_dssp             TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred             CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence            9999843333444 799999999999999864 588999999999999999999865555555544432           


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhccccc-EEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMR-LIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                                                   .+. .|++++|.+.+..+..+.. .+|++|++++|.+++..+..+..+++|
T Consensus       177 -----------------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          177 -----------------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             -----------------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             -----------------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence                                         233 7899999998666655544 489999999999996666678899999


Q ss_pred             CEEeccCCcCcccC
Q 046668          239 LSIDFSANQLYGEI  252 (381)
Q Consensus       239 ~~L~L~~n~l~~~~  252 (381)
                      ++|++++|++....
T Consensus       227 ~~L~l~~N~~~c~c  240 (276)
T 2z62_A          227 QKIWLHTNPWDCSC  240 (276)
T ss_dssp             CEEECCSSCBCCCT
T ss_pred             cEEEccCCcccccC
Confidence            99999999998543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=7.3e-26  Score=198.70  Aligned_cols=202  Identities=20%  Similarity=0.236  Sum_probs=176.1

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      .+.+++++++++ .+|..+.  +++++|++++|.+++..+.+|.++++|++|++++|.++...+..|.++++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            578999999999 5676553  6899999999999988888999999999999999999977777889999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |++. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..                  
T Consensus        95 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------  155 (270)
T 2o6q_A           95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK------------------  155 (270)
T ss_dssp             SCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred             CcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC------------------
Confidence            9998 666665558999999999999999888888999999999999999998544444443                  


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI  241 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  241 (381)
                                               +++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|
T Consensus       156 -------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          156 -------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             -------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             -------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence                                     4558899999999998777789999999999999999997666778899999999


Q ss_pred             eccCCcCcc
Q 046668          242 DFSANQLYG  250 (381)
Q Consensus       242 ~L~~n~l~~  250 (381)
                      ++++|.+..
T Consensus       211 ~l~~N~~~c  219 (270)
T 2o6q_A          211 QLQENPWDC  219 (270)
T ss_dssp             ECCSSCBCC
T ss_pred             EecCCCeeC
Confidence            999999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=5.7e-26  Score=213.78  Aligned_cols=250  Identities=18%  Similarity=0.167  Sum_probs=145.0

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.+++. |  +.++++|++|++++|.+++. +  ++++++|++|++++|.+++ +|  +.++++|++|+++
T Consensus        65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred             CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence            478888888888864 3  77888888888888888754 3  7788888888888888875 33  7788888888888


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++.+ ++  +. .+++|++|++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.++++.+.....
T Consensus       136 ~N~l~~-l~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          136 RNTLTE-ID--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             TSCCSC-CC--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             CCccce-ec--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence            888774 43  32 5667777777776433333  35566666666666666664 33  55556666666655554433


Q ss_pred             CCCCCCccccceEEEEeccccch--hhhcccccEEEccCCcccccCchhhhc----------------------------
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEY--NTILKLMRLIDLSKNKFSGEIPSEIMN----------------------------  210 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~L~~n~~~~~~~~~~~~----------------------------  210 (381)
                      +   ...........+....+..  +..+++|+.|++++|++++..+..+..                            
T Consensus       207 ~---l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~  283 (457)
T 3bz5_A          207 D---LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE  283 (457)
T ss_dssp             C---CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred             c---cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccc
Confidence            1   1111111122221111100  334566666666666666544433333                            


Q ss_pred             -cccCcEEeCCCcccccccCh--------hhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668          211 -LRALVSLDLSCNSFTGRIPN--------SIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       211 -l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                       +++|+.|++++|...+.+|.        .+...++|++|++++|++++. +  +..+++|+.|++++|++++
T Consensus       284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred             ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence             34444444444443332221        133445556666666666542 2  5555666666666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-26  Score=219.74  Aligned_cols=219  Identities=20%  Similarity=0.160  Sum_probs=180.5

Q ss_pred             CCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCC
Q 046668           45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH  124 (381)
Q Consensus        45 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (381)
                      ..+++|++|+|++|.+++..|..|.++++|++|+|++|.+.+..|  +. .+++|++|+|++|.+++..+     .++|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l~~-----~~~L~  102 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQELLV-----GPSIE  102 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence            345589999999999998888999999999999999999986555  43 79999999999999996533     38999


Q ss_pred             EEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccC
Q 046668          125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI  204 (381)
Q Consensus       125 ~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~  204 (381)
                      +|++++|.+.+..+.   .+++|+.++++.+.....+                   ...+..+++|+.|++++|.+++..
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~-------------------~~~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR-------------------DLDEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG-------------------GBCGGGGSSEEEEECTTSCCCEEE
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC-------------------chhhcCCCCCCEEECCCCCCCCcC
Confidence            999999999865544   3577888988887755332                   223345788999999999999888


Q ss_pred             chhhh-ccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCC
Q 046668          205 PSEIM-NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQ  283 (381)
Q Consensus       205 ~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~  283 (381)
                      |..+. .+++|++|+|++|.+++..+  ...+++|++|++++|.+++..| .+..+++|+.|++++|.+++..+....++
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~  237 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQ  237 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred             hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCC
Confidence            88776 79999999999999996533  3468999999999999996544 58899999999999999997544446678


Q ss_pred             ccCCCcccCCCCC
Q 046668          284 SFDPSSFTGNRLC  296 (381)
Q Consensus       284 ~l~~~~~~~n~l~  296 (381)
                      .+..+++.+|.+.
T Consensus       238 ~L~~L~l~~N~l~  250 (487)
T 3oja_A          238 NLEHFDLRGNGFH  250 (487)
T ss_dssp             TCCEEECTTCCBC
T ss_pred             CCCEEEcCCCCCc
Confidence            8888999999553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=6e-25  Score=206.65  Aligned_cols=122  Identities=22%  Similarity=0.296  Sum_probs=70.2

Q ss_pred             CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668           24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN  103 (381)
Q Consensus        24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  103 (381)
                      ++|++|++++|.+++ +| +|.++++|++|++++|.+++ +|..+   .+|++|++++|++. .+| .+. .+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~-~~~-~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP-ELQ-NLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC-CCT-TCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc-ccc-CCCCCCEEE
Confidence            466777777776664 44 46666677777777766663 44322   36666666666665 355 233 566666666


Q ss_pred             cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668          104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +++|.+++ +|..   .++|++|++++|.+. .+| .+..+++|+.++++.+....+
T Consensus       202 l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          202 ADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             CCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred             CCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc
Confidence            66666653 2322   135666666666665 444 255666666666655554443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=7.8e-26  Score=212.69  Aligned_cols=264  Identities=19%  Similarity=0.200  Sum_probs=173.6

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCC-------------CEEEccCCccceeCCcc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSL-------------QSLNLRKNSLSGQIPAS   67 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~~~~   67 (381)
                      +|++|++++|.+ +.+|..++++++|++|++++|.+.+..|..++++.+|             ++|++++|.+++ +|..
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~   89 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL   89 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence            478999999999 6999999999999999999999999999999988865             999999999885 4442


Q ss_pred             ccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccc
Q 046668           68 FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM  147 (381)
Q Consensus        68 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  147 (381)
                         .++|++|++++|.+.+ +|.    .+++|++|++++|.+++ ++..   .++|++|++++|.+++ +| .++++++|
T Consensus        90 ---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L  155 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL  155 (454)
T ss_dssp             ---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             ---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence               4789999999999984 774    34789999999998884 3321   2689999999999885 66 58889999


Q ss_pred             ccccccCCccccCCCCCCCccccceEEEEeccc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCccc
Q 046668          148 VTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSF  224 (381)
Q Consensus       148 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l  224 (381)
                      +.++++.+....+|....    ......+.+..   ...+..+++|+.|++++|.+++ +|..   .++|++|++++|.+
T Consensus       156 ~~L~l~~N~l~~lp~~~~----~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l  227 (454)
T 1jl5_A          156 KIIDVDNNSLKKLPDLPP----SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL  227 (454)
T ss_dssp             CEEECCSSCCSCCCCCCT----TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC
T ss_pred             CEEECCCCcCcccCCCcc----cccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC
Confidence            999988887766554321    11222222211   1234567778888888887774 3322   24788888888888


Q ss_pred             ccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCCC
Q 046668          225 TGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCG  297 (381)
Q Consensus       225 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~~  297 (381)
                      . .+|. ++.+++|++|++++|++++ +|..   +++|+.|++++|++.+ +|.  ..+.++.+++++|.+.+
T Consensus       228 ~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~--~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          228 E-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPE--LPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             S-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSE
T ss_pred             C-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCc--ccCcCCEEECcCCccCc
Confidence            7 6663 7788888888888888874 4432   3678888888888775 343  23566666677776554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=7.7e-25  Score=193.89  Aligned_cols=198  Identities=20%  Similarity=0.204  Sum_probs=173.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +++++++++++++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..+.  ..+++|++|+++
T Consensus        11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred             CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence            4789999999998 5665553  7899999999999988889999999999999999999865443  789999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++. .+|..+. .+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..                 
T Consensus        86 ~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----------------  146 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP-----------------  146 (290)
T ss_dssp             SSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------
T ss_pred             CCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-----------------
Confidence            99998 7887665 7999999999999999777788999999999999999998554444443                 


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS  240 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  240 (381)
                                                +++|+.|++++|+++...+..|..+++|++|++++|.++ .+|..+...+.|+.
T Consensus       147 --------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~  199 (290)
T 1p9a_G          147 --------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF  199 (290)
T ss_dssp             --------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred             --------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence                                      455889999999999777777899999999999999999 78888888899999


Q ss_pred             EeccCCcCc
Q 046668          241 IDFSANQLY  249 (381)
Q Consensus       241 L~L~~n~l~  249 (381)
                      +++++|.+.
T Consensus       200 l~L~~Np~~  208 (290)
T 1p9a_G          200 AFLHGNPWL  208 (290)
T ss_dssp             EECCSCCBC
T ss_pred             EEeCCCCcc
Confidence            999999986

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=2.3e-25  Score=195.68  Aligned_cols=217  Identities=20%  Similarity=0.189  Sum_probs=180.4

Q ss_pred             EcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCc
Q 046668            6 KLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV   85 (381)
Q Consensus         6 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   85 (381)
                      ++..+.+...  ..+..+++|+.|++++|.++. . ..+..+++|++|++++|.+.+ + ..+.++++|++|++++|.+.
T Consensus        25 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           25 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC
T ss_pred             HhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC
Confidence            3445555433  335678999999999999873 3 357889999999999999985 3 47899999999999999998


Q ss_pred             ccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCC
Q 046668           86 GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST  165 (381)
Q Consensus        86 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~  165 (381)
                       .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..                      
T Consensus        99 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------  155 (272)
T 3rfs_A           99 -SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----------------------  155 (272)
T ss_dssp             -CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------------------
T ss_pred             -ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc----------------------
Confidence             455544448999999999999999877778999999999999999998555544444                      


Q ss_pred             CccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccC
Q 046668          166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSA  245 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  245 (381)
                                           +++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus       156 ---------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          156 ---------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             ---------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ---------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence                                 45588999999999988888889999999999999999987787889999999999999


Q ss_pred             CcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668          246 NQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       246 n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  279 (381)
                      |.+.+       .++.|+.+++..|.++|.+|..
T Consensus       215 N~~~~-------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          215 NPWDC-------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             SCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             CCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence            98874       3557999999999999998864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=9.7e-26  Score=198.09  Aligned_cols=206  Identities=19%  Similarity=0.258  Sum_probs=174.0

Q ss_pred             CCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEE
Q 046668           23 WLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL  102 (381)
Q Consensus        23 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  102 (381)
                      +.++..+++..+.+.+..  .+..+++|++|++++|.++. + ..+..+++|++|++++|.+.+ ++ .+. .+++|++|
T Consensus        18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L   90 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-IS-ALK-ELTNLTYL   90 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CG-GGT-TCTTCCEE
T ss_pred             HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-ch-hhc-CCCCCCEE
Confidence            345556677777766442  34578999999999999873 3 358899999999999999974 44 444 79999999


Q ss_pred             EcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccc
Q 046668          103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE  182 (381)
Q Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (381)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+..                                       
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------------------------  131 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK---------------------------------------  131 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------------------------------------
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc---------------------------------------
Confidence            99999999887788899999999999999998655554544                                       


Q ss_pred             hhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCC
Q 046668          183 YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFL  262 (381)
Q Consensus       183 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  262 (381)
                          +++|+.|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|
T Consensus       132 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  207 (272)
T 3rfs_A          132 ----LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  207 (272)
T ss_dssp             ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ----CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence                4558899999999998888888999999999999999997777778999999999999999998888888999999


Q ss_pred             CeeeCCCCcceecCCC
Q 046668          263 SRLKLSNNNLSGKIPL  278 (381)
Q Consensus       263 ~~L~l~~N~l~~~~~~  278 (381)
                      +.|++++|++.|.+|.
T Consensus       208 ~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          208 QYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CEEECCSSCBCCCTTT
T ss_pred             CEEEccCCCccccCcH
Confidence            9999999999998875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=5.5e-24  Score=206.28  Aligned_cols=242  Identities=25%  Similarity=0.344  Sum_probs=140.9

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ++.|++++|.++ .+|..+.  ++|++|+|++|.++ .+|.   .+++|++|+|++|.++ .+|.   .+++|++|++++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS  110 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence            677888888887 5666554  68888888888887 3444   4678888888888877 3444   667788888888


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccc-----------------cc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCIS-----------------NI  144 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------------~l  144 (381)
                      |++. .+|.    .+++|+.|++++|.++. +|..   +++|++|++++|.+++ +|..+.                 .+
T Consensus       111 N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~  180 (622)
T 3g06_A          111 NPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLP  180 (622)
T ss_dssp             CCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred             CcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccC
Confidence            8776 4554    35677777777777773 3432   3667777777777663 333221                 12


Q ss_pred             cccccccccCCccccCCCCCCCccccceEEEEeccccchh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCCcc
Q 046668          145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS  223 (381)
Q Consensus       145 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~  223 (381)
                      ++|+.++++.+....++...    .......+.++.+..+ ..+++|+.|++++|++++ +|   ..+++|+.|++++|.
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~----~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLP----SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR  252 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred             CCCcEEECCCCCCCCCCCcc----chhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence            44444555544444333211    1111111111111111 113456666666666653 33   344566666666666


Q ss_pred             cccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCC
Q 046668          224 FTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP  277 (381)
Q Consensus       224 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  277 (381)
                      ++ .+|.   .+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+
T Consensus       253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            66 3443   3456666666666666 455556666666666666666655433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=8.3e-25  Score=188.43  Aligned_cols=206  Identities=17%  Similarity=0.200  Sum_probs=166.0

Q ss_pred             ccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-cceeCCccccCCCCCCEEeCcC-CcCcccCC
Q 046668           12 FSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-LSGQIPASFQNCTKLVMLDIGE-NEFVGNVP   89 (381)
Q Consensus        12 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~   89 (381)
                      ++ .+|. +.  ++|++|++++|.++++.+.+|.++++|++|++++|. ++...+.+|.++++|++|++++ |++. .++
T Consensus        23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~   97 (239)
T 2xwt_C           23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID   97 (239)
T ss_dssp             CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC
T ss_pred             cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC
Confidence            44 4565 33  389999999999998888899999999999999997 8877778999999999999998 9998 566


Q ss_pred             hhHHhcCCCCcEEEcccccccccCCcCccCCCCCC---EEeccCC-cCCCCcCcccccccccccccccCCccccCCCCCC
Q 046668           90 TWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH---VLDLADN-HLSGSIPKCISNISSMVTANFSIGTDVQYPSVST  165 (381)
Q Consensus        90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~  165 (381)
                      ...+..+++|++|++++|.+++ +|. +..+++|+   +|++++| .+++..+..|..                      
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~----------------------  153 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG----------------------  153 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT----------------------
T ss_pred             HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc----------------------
Confidence            5555489999999999999995 565 88888888   9999999 887444444544                      


Q ss_pred             CccccceEEEEeccccchhhhccccc-EEEccCCcccccCchhhhccccCcEEeCCCcc-cccccChhhhcc-CCCCEEe
Q 046668          166 GKYVEDALLVLKGKAVEYNTILKLMR-LIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS-FTGRIPNSIGAL-ESILSID  242 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~  242 (381)
                                           +++|+ .|++++|+++...+..+.. ++|++|++++|. +++..+..+..+ ++|++|+
T Consensus       154 ---------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          154 ---------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             ---------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             ---------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence                                 44577 8888888888555555555 899999999995 886667788888 9999999


Q ss_pred             ccCCcCcccCchhhhCCCCCCeeeCCCCc
Q 046668          243 FSANQLYGEIPQSISSLTFLSRLKLSNNN  271 (381)
Q Consensus       243 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~  271 (381)
                      +++|.+++ +|..  .+++|+.|+++++.
T Consensus       212 l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          212 VSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             CCCCcccc-CChh--HhccCceeeccCcc
Confidence            99999984 4443  67789999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=2e-24  Score=186.11  Aligned_cols=209  Identities=16%  Similarity=0.227  Sum_probs=168.6

Q ss_pred             cCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc-CcccCChhHHhcCCCCcEEEccc-cccccc
Q 046668           35 NFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE-FVGNVPTWIGIRFSSLMILNLRS-NKFRGV  112 (381)
Q Consensus        35 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~  112 (381)
                      .++ .+|. +.  .+|++|++++|.+++..+.+|.++++|++|++++|+ +. .++...+..+++|++|++++ |.++..
T Consensus        22 ~l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           22 DIQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             SCS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             Ccc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            355 4565 54  489999999999998888899999999999999997 76 66665555899999999998 999977


Q ss_pred             CCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccE
Q 046668          113 LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRL  192 (381)
Q Consensus       113 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  192 (381)
                      .+..|.++++|++|++++|.+++ +|. +..+++|                                        +.|+.
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L----------------------------------------~~L~~  134 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST----------------------------------------DIFFI  134 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC----------------------------------------CSEEE
T ss_pred             CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc----------------------------------------ccccE
Confidence            77889999999999999999984 554 4443332                                        22458


Q ss_pred             EEccCC-cccccCchhhhccccCc-EEeCCCcccccccChhhhccCCCCEEeccCCc-CcccCchhhhCC-CCCCeeeCC
Q 046668          193 IDLSKN-KFSGEIPSEIMNLRALV-SLDLSCNSFTGRIPNSIGALESILSIDFSANQ-LYGEIPQSISSL-TFLSRLKLS  268 (381)
Q Consensus       193 L~L~~n-~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~l~  268 (381)
                      |++++| .+++..+..|..+++|+ +|++++|.++...+..+.. ++|++|++++|+ +++..+..+..+ ++|+.|+++
T Consensus       135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred             EECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence            999999 89877778899999999 9999999999444444544 899999999995 987777888889 999999999


Q ss_pred             CCcceecCCCCCCCCccCCCcccCC
Q 046668          269 NNNLSGKIPLSTQLQSFDPSSFTGN  293 (381)
Q Consensus       269 ~N~l~~~~~~~~~l~~l~~~~~~~n  293 (381)
                      +|+++. +|.. .++.++.+.+.++
T Consensus       214 ~N~l~~-l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          214 QTSVTA-LPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             TCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred             CCcccc-CChh-HhccCceeeccCc
Confidence            999984 4443 5677777766654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.92  E-value=4.4e-26  Score=210.65  Aligned_cols=247  Identities=15%  Similarity=0.199  Sum_probs=186.6

Q ss_pred             cCCccccCCCCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCc---cceeCCccc-------cCCCCCCEEeCc
Q 046668           15 EIPDCWMNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNS---LSGQIPASF-------QNCTKLVMLDIG   80 (381)
Q Consensus        15 ~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~   80 (381)
                      .++..+..+++|++|+|++|.+++.    ++..|..+++|++|+|++|.   +.+.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            4566777889999999999988765    33457789999999999864   444455444       688999999999


Q ss_pred             CCcCcc----cCChhHHhcCCCCcEEEcccccccccCCcC----ccCC---------CCCCEEeccCCcCC-CCcC---c
Q 046668           81 ENEFVG----NVPTWIGIRFSSLMILNLRSNKFRGVLPNQ----LCGL---------TSLHVLDLADNHLS-GSIP---K  139 (381)
Q Consensus        81 ~n~l~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~l~-~~~~---~  139 (381)
                      +|.+.+    .+|..+. .+++|++|+|++|.++...+..    +..+         ++|++|++++|+++ ..++   .
T Consensus       103 ~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            999875    3555665 7899999999999887443333    3333         89999999999987 3444   4


Q ss_pred             ccccccccccccccCCccccCCCCCCCccccceEEEEeccccc-hhhhcccccEEEccCCccc----ccCchhhhccccC
Q 046668          140 CISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE-YNTILKLMRLIDLSKNKFS----GEIPSEIMNLRAL  214 (381)
Q Consensus       140 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~~~----~~~~~~~~~l~~L  214 (381)
                      .+..+++|+.++++.+......              . ..... .+..+++|+.|++++|.++    ..+|..+..+++|
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g--------------~-~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEG--------------I-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  246 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHH--------------H-HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             HHHhCCCcCEEECcCCCCCHhH--------------H-HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence            6677888888888877543100              0 00111 3455788999999999996    5677888999999


Q ss_pred             cEEeCCCcccccc----cChhhhc--cCCCCEEeccCCcCcc----cCchhh-hCCCCCCeeeCCCCcceecCC
Q 046668          215 VSLDLSCNSFTGR----IPNSIGA--LESILSIDFSANQLYG----EIPQSI-SSLTFLSRLKLSNNNLSGKIP  277 (381)
Q Consensus       215 ~~L~Ls~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~~  277 (381)
                      ++|+|++|.+++.    ++..+..  +++|++|++++|.++.    .+|..+ ..+++|++|++++|++++..+
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            9999999999865    4556643  8999999999999997    477777 668999999999999987653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=2.2e-25  Score=199.65  Aligned_cols=227  Identities=21%  Similarity=0.220  Sum_probs=177.1

Q ss_pred             ccEEEcCCCcccccCCc---cccCCCCCCEEECcCCcCcccCCccC--CCCCCCCEEEccCCccceeCC----ccccCCC
Q 046668            2 IRILKLGENHFSGEIPD---CWMNWLDLLVLNLGNNNFTGNIPISL--GMLSSLQSLNLRKNSLSGQIP----ASFQNCT   72 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~   72 (381)
                      ++.+++.++.++...-.   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            56788888876532111   12346789999999999998999888  899999999999999986544    4456799


Q ss_pred             CCCEEeCcCCcCcccCChhHHhcCCCCcEEEccccccccc---C-CcCccCCCCCCEEeccCCcCCCCcCcccccccccc
Q 046668           73 KLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV---L-PNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMV  148 (381)
Q Consensus        73 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  148 (381)
                      +|++|++++|++.+..+..+. .+++|++|++++|.+.+.   . +..+..+++|++|++++|+++ .++....      
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~------  217 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCA------  217 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHH------
T ss_pred             CCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHH------
Confidence            999999999999854445444 899999999999997642   2 233478899999999999986 2222100      


Q ss_pred             cccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhcc---ccCcEEeCCCcccc
Q 046668          149 TANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNL---RALVSLDLSCNSFT  225 (381)
Q Consensus       149 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~Ls~n~l~  225 (381)
                                                       .....+++|+.|++++|++.+..|..+..+   ++|++|++++|.++
T Consensus       218 ---------------------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          218 ---------------------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             ---------------------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             ---------------------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence                                             011235679999999999998877777766   69999999999999


Q ss_pred             cccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668          226 GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       226 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                       .+|..+.  ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus       265 -~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          265 -QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence             7777664  8999999999999954 43 6788999999999999863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=1.4e-24  Score=188.43  Aligned_cols=211  Identities=21%  Similarity=0.217  Sum_probs=135.3

Q ss_pred             CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEE
Q 046668           24 LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILN  103 (381)
Q Consensus        24 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  103 (381)
                      .+.++++++++.++ .+|..+.  +++++|++++|.+.+..+.+|.++++|++|++++|.+.+ ++...+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEE
Confidence            35677888888877 5555554  577888888888877777777777777777777777763 3333222566666666


Q ss_pred             cccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccch
Q 046668          104 LRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY  183 (381)
Q Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (381)
                      +++|.+++..+..|..+++|++|++++|.++                                                 
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------------------------------  120 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-------------------------------------------------  120 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------------------------------
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCC-------------------------------------------------
Confidence            6666666554455555555555555555544                                                 


Q ss_pred             hhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCC
Q 046668          184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS  263 (381)
Q Consensus       184 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  263 (381)
                                        +..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus       121 ------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          121 ------------------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             ------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ------------------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence                              34444566677777888888877755555677788888888888888866666778888888


Q ss_pred             eeeCCCCcceecCCCCCCC-Ccc-----CCCcccCCCCCCCCCCCCCC
Q 046668          264 RLKLSNNNLSGKIPLSTQL-QSF-----DPSSFTGNRLCGSPLPNNCF  305 (381)
Q Consensus       264 ~L~l~~N~l~~~~~~~~~l-~~l-----~~~~~~~n~l~~~~~~~~c~  305 (381)
                      .|++++|++.|.+.....+ .++     ......++.+++.|....|.
T Consensus       183 ~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~  230 (251)
T 3m19_A          183 TITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCS  230 (251)
T ss_dssp             EEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBT
T ss_pred             EEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccC
Confidence            8888888888773322111 111     11233455677777777885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.92  E-value=8.1e-27  Score=220.68  Aligned_cols=295  Identities=16%  Similarity=0.137  Sum_probs=170.8

Q ss_pred             CccEEEcCCCcccccCCccc-cCCC----CCCEEECcCCcCcc----cCCccCCCCCCCCEEEccCCccceeCCcccc--
Q 046668            1 GIRILKLGENHFSGEIPDCW-MNWL----DLLVLNLGNNNFTG----NIPISLGMLSSLQSLNLRKNSLSGQIPASFQ--   69 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~-~~l~----~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--   69 (381)
                      +|++|++++|.+....+..+ ..++    +|++|+|++|.++.    .++..|..+++|++|++++|.+.+..+..+.  
T Consensus        57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  136 (461)
T 1z7x_W           57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG  136 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH
Confidence            47889999998876444443 3355    69999999998873    4577888888999999999888654443332  


Q ss_pred             ---CCCCCCEEeCcCCcCcccC----ChhHHhcCCCCcEEEcccccccccCCcCcc-----CCCCCCEEeccCCcCCCC-
Q 046668           70 ---NCTKLVMLDIGENEFVGNV----PTWIGIRFSSLMILNLRSNKFRGVLPNQLC-----GLTSLHVLDLADNHLSGS-  136 (381)
Q Consensus        70 ---~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~-  136 (381)
                         ..++|++|++++|++.+..    +..+. .+++|++|++++|.+....+..+.     ..++|++|++++|.+++. 
T Consensus       137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  215 (461)
T 1z7x_W          137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN  215 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             HhcCCCcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence               3567888888888887432    33333 578888888888887654333332     356888888888888753 


Q ss_pred             ---cCcccccccccccccccCCccccCC-----CCCCCccccceEEEEeccc---------cchhhhcccccEEEccCCc
Q 046668          137 ---IPKCISNISSMVTANFSIGTDVQYP-----SVSTGKYVEDALLVLKGKA---------VEYNTILKLMRLIDLSKNK  199 (381)
Q Consensus       137 ---~~~~~~~l~~L~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~L~~L~L~~n~  199 (381)
                         ++..+..+++|+.++++.+......     ..............+.+..         ...+..+++|+.|++++|.
T Consensus       216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence               4666777788888888776532210     0000000111111221111         1122335556666666666


Q ss_pred             ccccCchhhhcc-----ccCcEEeCCCcccccc----cChhhhccCCCCEEeccCCcCcccCchhhhC-----CCCCCee
Q 046668          200 FSGEIPSEIMNL-----RALVSLDLSCNSFTGR----IPNSIGALESILSIDFSANQLYGEIPQSISS-----LTFLSRL  265 (381)
Q Consensus       200 ~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L  265 (381)
                      +.+..+..+...     ++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|
T Consensus       296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence            554333333222     4666666666665543    3344455566666666666665433333321     4566666


Q ss_pred             eCCCCccee----cCCCC-CCCCccCCCcccCCCCC
Q 046668          266 KLSNNNLSG----KIPLS-TQLQSFDPSSFTGNRLC  296 (381)
Q Consensus       266 ~l~~N~l~~----~~~~~-~~l~~l~~~~~~~n~l~  296 (381)
                      ++++|+++.    .++.. ..++.++.+++.+|.+.
T Consensus       376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            666666553    22211 22345555556655443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.92  E-value=6.4e-25  Score=196.65  Aligned_cols=228  Identities=20%  Similarity=0.236  Sum_probs=179.4

Q ss_pred             CCCCCCEEECcCCcCcccCCc---cCCCCCCCCEEEccCCccceeCCccc--cCCCCCCEEeCcCCcCcccCC----hhH
Q 046668           22 NWLDLLVLNLGNNNFTGNIPI---SLGMLSSLQSLNLRKNSLSGQIPASF--QNCTKLVMLDIGENEFVGNVP----TWI   92 (381)
Q Consensus        22 ~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~   92 (381)
                      +...++.+.+.++.++...-.   .+..+++|++|++++|.+.+..|..+  .++++|++|++++|.+.+..+    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            344688899988877532111   12235679999999999998999888  999999999999999986554    223


Q ss_pred             HhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCC--cC--cccccccccccccccCCccccCCCCCCCcc
Q 046668           93 GIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS--IP--KCISNISSMVTANFSIGTDVQYPSVSTGKY  168 (381)
Q Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  168 (381)
                      . .+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++  ..+..                         
T Consensus       142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-------------------------  195 (310)
T 4glp_A          142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK-------------------------  195 (310)
T ss_dssp             T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS-------------------------
T ss_pred             h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc-------------------------
Confidence            3 689999999999999988889999999999999999997632  11  11122                         


Q ss_pred             ccceEEEEeccccchhhhcccccEEEccCCcccccCc--h-hhhccccCcEEeCCCcccccccChhhhcc---CCCCEEe
Q 046668          169 VEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP--S-EIMNLRALVSLDLSCNSFTGRIPNSIGAL---ESILSID  242 (381)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~  242 (381)
                                        +++|+.|++++|+++...+  . .+..+++|++|++++|.+++..|..+..+   ++|++|+
T Consensus       196 ------------------l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~  257 (310)
T 4glp_A          196 ------------------FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN  257 (310)
T ss_dssp             ------------------SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred             ------------------CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence                              4558888889998863222  1 35788999999999999997778777666   7999999


Q ss_pred             ccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCCC
Q 046668          243 FSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCG  297 (381)
Q Consensus       243 L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~~  297 (381)
                      +++|+++ .+|..+.  ++|+.|++++|++++. |....++.++.+++++|.+..
T Consensus       258 Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          258 LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred             CCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence            9999999 6676654  7999999999999863 445678899999999997764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=1.6e-25  Score=205.01  Aligned_cols=257  Identities=15%  Similarity=0.136  Sum_probs=181.8

Q ss_pred             EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCC----ccCCCCC-CCCEEEccCCccceeCCccccCC-----CC
Q 046668            4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIP----ISLGMLS-SLQSLNLRKNSLSGQIPASFQNC-----TK   73 (381)
Q Consensus         4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~   73 (381)
                      .++++.|.+++.+|..+...++|++|+|++|.+++..+    .+|.+++ +|++|++++|.+.+..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            57899999998888877777779999999999987666    7788888 89999999999997777777765     99


Q ss_pred             CCEEeCcCCcCcccCChhHHh---cC-CCCcEEEcccccccccCCcC----ccC-CCCCCEEeccCCcCCCCcCc----c
Q 046668           74 LVMLDIGENEFVGNVPTWIGI---RF-SSLMILNLRSNKFRGVLPNQ----LCG-LTSLHVLDLADNHLSGSIPK----C  140 (381)
Q Consensus        74 L~~L~L~~n~l~~~~~~~~~~---~l-~~L~~L~L~~n~l~~~~~~~----~~~-l~~L~~L~L~~n~l~~~~~~----~  140 (381)
                      |++|++++|++.+..+..+..   .+ ++|++|++++|.+++..+..    +.. .++|++|++++|.+++....    .
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998555554432   33 79999999999998655443    334 35999999999999854433    3


Q ss_pred             ccccc-ccccccccCCccccCCCCCCCccccceEEEEeccccchhhhc-ccccEEEccCCccccc----Cchhhhc-ccc
Q 046668          141 ISNIS-SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTIL-KLMRLIDLSKNKFSGE----IPSEIMN-LRA  213 (381)
Q Consensus       141 ~~~l~-~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~----~~~~~~~-l~~  213 (381)
                      +...+ +|+.++++.+........               .....+... ++|+.|++++|.+.+.    ++..+.. .++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~---------------~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~  226 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCA---------------ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH  226 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHH---------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred             HhcCCccccEeeecCCCCchhhHH---------------HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence            34444 777777777654321100               000112223 4788888888887753    3344444 347


Q ss_pred             CcEEeCCCcccccccC----hhhhccCCCCEEeccCCcCccc-------CchhhhCCCCCCeeeCCCCcceec
Q 046668          214 LVSLDLSCNSFTGRIP----NSIGALESILSIDFSANQLYGE-------IPQSISSLTFLSRLKLSNNNLSGK  275 (381)
Q Consensus       214 L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~l~~N~l~~~  275 (381)
                      |++|+|++|.+++..+    ..+..+++|++|++++|.+.+.       ++..+..+++|+.||+++|++...
T Consensus       227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            8888888888875443    2345667888888888874422       223455667788888888887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.4e-23  Score=182.10  Aligned_cols=178  Identities=21%  Similarity=0.240  Sum_probs=142.3

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      .++++++++.++ .+|..+.  ++++.|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            468999999998 5676654  6899999999999988888999999999999999999988888999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |++. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..                  
T Consensus        93 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------  153 (251)
T 3m19_A           93 NQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK------------------  153 (251)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred             Cccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc------------------
Confidence            9998 566555558999999999999999777777888999999999999887443333433                  


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCccccc
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG  226 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  226 (381)
                                               +++|+.|++++|++++..+..+..+++|+.|++++|.+..
T Consensus       154 -------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          154 -------------------------LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             -------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             -------------------------CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence                                     2335666666666665555556666666666666666653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=3.2e-25  Score=200.94  Aligned_cols=222  Identities=16%  Similarity=0.207  Sum_probs=151.0

Q ss_pred             ccEEEcCCCcccccCCccccCC--CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcccee-CCccccCCCCCCEEe
Q 046668            2 IRILKLGENHFSGEIPDCWMNW--LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ-IPASFQNCTKLVMLD   78 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~   78 (381)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            567888888766   4556666  8889999998888866555 45688899999998888755 777788888999999


Q ss_pred             CcCCcCcccCChhHHhcCCCCcEEEcccc-ccccc-CCcCccCCCCCCEEeccCC-cCCCC-cCcccccccccccccccC
Q 046668           79 IGENEFVGNVPTWIGIRFSSLMILNLRSN-KFRGV-LPNQLCGLTSLHVLDLADN-HLSGS-IPKCISNISSMVTANFSI  154 (381)
Q Consensus        79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~l~~~~  154 (381)
                      +++|.+.+..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++         
T Consensus       125 L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~---------  194 (336)
T 2ast_B          125 LEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS---------  194 (336)
T ss_dssp             CTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC---------
T ss_pred             CcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc---------
Confidence            998888766666665 6888999999888 56642 4556777888888888888 77632 334344433         


Q ss_pred             CccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCC--ccc-ccCchhhhccccCcEEeCCCcc-cccccCh
Q 046668          155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKN--KFS-GEIPSEIMNLRALVSLDLSCNS-FTGRIPN  230 (381)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n--~~~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~  230 (381)
                                                       .+|+.|++++|  .++ +.++..+..+++|++|++++|. +++..+.
T Consensus       195 ---------------------------------~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  241 (336)
T 2ast_B          195 ---------------------------------ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  241 (336)
T ss_dssp             ---------------------------------TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             ---------------------------------cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence                                             04666666666  333 2344555666666666666666 5545555


Q ss_pred             hhhccCCCCEEeccCCc-CcccCchhhhCCCCCCeeeCCCC
Q 046668          231 SIGALESILSIDFSANQ-LYGEIPQSISSLTFLSRLKLSNN  270 (381)
Q Consensus       231 ~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~N  270 (381)
                      .+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            66666666666666663 22221224556666666666666

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=8.9e-24  Score=188.86  Aligned_cols=195  Identities=24%  Similarity=0.389  Sum_probs=154.4

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCC
Q 046668           20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSL   99 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   99 (381)
                      +..+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+  +.++++|++|++++|++. .++ .+. .+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCC
Confidence            4568889999999998874 44 57788999999999998885443  888999999999999887 454 344 78899


Q ss_pred             cEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecc
Q 046668          100 MILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK  179 (381)
Q Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (381)
                      ++|++++|.+++. + .+..+++|++|++++|.+++..+  +.                                     
T Consensus       110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~-------------------------------------  148 (308)
T 1h6u_A          110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA-------------------------------------  148 (308)
T ss_dssp             CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG-------------------------------------
T ss_pred             CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc-------------------------------------
Confidence            9999999988854 3 38888999999999998874322  22                                     


Q ss_pred             ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCC
Q 046668          180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL  259 (381)
Q Consensus       180 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  259 (381)
                            .+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+
T Consensus       149 ------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l  216 (308)
T 1h6u_A          149 ------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT  216 (308)
T ss_dssp             ------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred             ------CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence                  25568888999998875444  8889999999999999984433  7888999999999999985543  7888


Q ss_pred             CCCCeeeCCCCccee
Q 046668          260 TFLSRLKLSNNNLSG  274 (381)
Q Consensus       260 ~~L~~L~l~~N~l~~  274 (381)
                      ++|+.|++++|++++
T Consensus       217 ~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          217 SNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCCEEEEEEEEEEC
T ss_pred             CCCCEEEccCCeeec
Confidence            999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=1.3e-25  Score=207.49  Aligned_cols=254  Identities=15%  Similarity=0.164  Sum_probs=192.9

Q ss_pred             ECcCCcCcccCCccCCCCCCCCEEEccCCccceeCC----ccccCCCCCCEEeCcCCc---CcccCChhHH------hcC
Q 046668           30 NLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIP----ASFQNCTKLVMLDIGENE---FVGNVPTWIG------IRF   96 (381)
Q Consensus        30 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~~~------~~l   96 (381)
                      .++...+. .++..+..+++|++|+|++|.+....+    ..+..+++|++|+|++|.   +.+.+|..+.      ..+
T Consensus        15 ~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~   93 (386)
T 2ca6_A           15 AITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC   93 (386)
T ss_dssp             SCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred             CCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence            33333443 566677788999999999999986544    447789999999999964   4445565551      368


Q ss_pred             CCCcEEEcccccccc----cCCcCccCCCCCCEEeccCCcCCCCcCcccc----cc---------cccccccccCCcccc
Q 046668           97 SSLMILNLRSNKFRG----VLPNQLCGLTSLHVLDLADNHLSGSIPKCIS----NI---------SSMVTANFSIGTDVQ  159 (381)
Q Consensus        97 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~l~~~~~~~~~  159 (381)
                      ++|++|+|++|.+..    .++..+..+++|++|++++|.+....+..+.    .+         ++|+.++++.+....
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            999999999999986    4667788899999999999998754444443    33         899999988776431


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccc-----cCchhhhccccCcEEeCCCcccc----cccCh
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSG-----EIPSEIMNLRALVSLDLSCNSFT----GRIPN  230 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~  230 (381)
                      ..      .         ......+..+++|+.|++++|++..     ..+..+..+++|++|+|++|.++    ..+|.
T Consensus       174 ~~------~---------~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          174 GS------M---------KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             GG------H---------HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             HH------H---------HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            00      0         0011234567899999999999873     23447889999999999999996    46788


Q ss_pred             hhhccCCCCEEeccCCcCccc----CchhhhC--CCCCCeeeCCCCccee----cCCCC--CCCCccCCCcccCCCCCCC
Q 046668          231 SIGALESILSIDFSANQLYGE----IPQSISS--LTFLSRLKLSNNNLSG----KIPLS--TQLQSFDPSSFTGNRLCGS  298 (381)
Q Consensus       231 ~~~~l~~L~~L~L~~n~l~~~----~~~~l~~--l~~L~~L~l~~N~l~~----~~~~~--~~l~~l~~~~~~~n~l~~~  298 (381)
                      .+..+++|++|++++|.+++.    ++..+..  +++|+.|++++|+++.    .+|..  ..++.++.+++.+|.+.+.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            889999999999999999865    5666644  8999999999999987    35432  2367888999999988765


Q ss_pred             C
Q 046668          299 P  299 (381)
Q Consensus       299 ~  299 (381)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            4

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=2.9e-25  Score=209.98  Aligned_cols=274  Identities=18%  Similarity=0.095  Sum_probs=195.1

Q ss_pred             CccEEEcCCCcccc----cCCccccCCCCCCEEECcCCcCcccCCccC-----CCCCCCCEEEccCCcccee----CCcc
Q 046668            1 GIRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNNFTGNIPISL-----GMLSSLQSLNLRKNSLSGQ----IPAS   67 (381)
Q Consensus         1 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~   67 (381)
                      +|++|++++|.++.    .++..+.++++|++|++++|.+++..+..+     ...++|++|++++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            38999999999884    557888999999999999999875433332     2356899999999988753    3566


Q ss_pred             ccCCCCCCEEeCcCCcCcccCChhHHh----cCCCCcEEEccccccccc----CCcCccCCCCCCEEeccCCcCCCCcC-
Q 046668           68 FQNCTKLVMLDIGENEFVGNVPTWIGI----RFSSLMILNLRSNKFRGV----LPNQLCGLTSLHVLDLADNHLSGSIP-  138 (381)
Q Consensus        68 ~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~-  138 (381)
                      +..+++|++|++++|.+.+..+..+..    ..++|++|++++|.++..    ++..+..+++|++|++++|.+.+... 
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            777899999999999886433333332    255888888888887753    35556677888888888887764321 


Q ss_pred             ----cccccccccccccccCCccccC-----CCCCCCccccceEEEEeccccc-----hhhh-----cccccEEEccCCc
Q 046668          139 ----KCISNISSMVTANFSIGTDVQY-----PSVSTGKYVEDALLVLKGKAVE-----YNTI-----LKLMRLIDLSKNK  199 (381)
Q Consensus       139 ----~~~~~l~~L~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~L~~L~L~~n~  199 (381)
                          ..+..+++|+.++++.+.....     +.. ...........+.+....     .+..     .+.|+.|++++|.
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence                2223467777777777654331     110 000112222333333221     1221     2689999999999


Q ss_pred             cccc----CchhhhccccCcEEeCCCcccccccChhhhc-----cCCCCEEeccCCcCcc----cCchhhhCCCCCCeee
Q 046668          200 FSGE----IPSEIMNLRALVSLDLSCNSFTGRIPNSIGA-----LESILSIDFSANQLYG----EIPQSISSLTFLSRLK  266 (381)
Q Consensus       200 ~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~  266 (381)
                      +++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|+
T Consensus       325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~  404 (461)
T 1z7x_W          325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD  404 (461)
T ss_dssp             CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred             CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence            9865    4566778899999999999998765555543     6799999999999986    6788888999999999


Q ss_pred             CCCCcceec
Q 046668          267 LSNNNLSGK  275 (381)
Q Consensus       267 l~~N~l~~~  275 (381)
                      +++|++++.
T Consensus       405 l~~N~i~~~  413 (461)
T 1z7x_W          405 LSNNCLGDA  413 (461)
T ss_dssp             CCSSSCCHH
T ss_pred             CCCCCCCHH
Confidence            999998753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=7.2e-25  Score=200.61  Aligned_cols=241  Identities=19%  Similarity=0.187  Sum_probs=182.3

Q ss_pred             CccEEEcCCCcccccCC----ccccCCC-CCCEEECcCCcCcccCCccCCCC-----CCCCEEEccCCccceeCCccc--
Q 046668            1 GIRILKLGENHFSGEIP----DCWMNWL-DLLVLNLGNNNFTGNIPISLGML-----SSLQSLNLRKNSLSGQIPASF--   68 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~--   68 (381)
                      +|++|++++|.+++..+    .+|.+++ +|++|+|++|.+++..+..|..+     ++|++|++++|.+++..+..+  
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            48999999999997766    7788898 99999999999997777777665     999999999999987666644  


Q ss_pred             --cCC-CCCCEEeCcCCcCcccCChhHHh---c-CCCCcEEEcccccccccC----CcCccCCC-CCCEEeccCCcCCCC
Q 046668           69 --QNC-TKLVMLDIGENEFVGNVPTWIGI---R-FSSLMILNLRSNKFRGVL----PNQLCGLT-SLHVLDLADNHLSGS  136 (381)
Q Consensus        69 --~~l-~~L~~L~L~~n~l~~~~~~~~~~---~-l~~L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~  136 (381)
                        ..+ ++|++|++++|++.+..+..+..   . ..+|++|++++|.+++..    +..+...+ +|++|++++|.+++.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence              445 89999999999998544444432   2 369999999999998533    33445555 999999999999877


Q ss_pred             cCcccc----cc-cccccccccCCccccCCCCCCCccccceEEEEeccccchhhh-cccccEEEccCCcccccCch----
Q 046668          137 IPKCIS----NI-SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTI-LKLMRLIDLSKNKFSGEIPS----  206 (381)
Q Consensus       137 ~~~~~~----~l-~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~----  206 (381)
                      .+..+.    .. ++|+.++++.+.......               ......+.. .++|+.|++++|.+++..+.    
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGLKSY---------------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCH---------------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCChhHH---------------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            665554    34 699999998887542100               001122233 35899999999999876553    


Q ss_pred             hhhccccCcEEeCCCcccccc-------cChhhhccCCCCEEeccCCcCcccCchhh
Q 046668          207 EIMNLRALVSLDLSCNSFTGR-------IPNSIGALESILSIDFSANQLYGEIPQSI  256 (381)
Q Consensus       207 ~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  256 (381)
                      .+..+++|++|++++|.+.+.       ++..+..+++|+.|++++|.+....+..+
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            356779999999999995532       23356778899999999999986655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=4.4e-23  Score=184.34  Aligned_cols=190  Identities=22%  Similarity=0.366  Sum_probs=160.6

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ + ..+.++++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECC
Confidence            48999999999984 44 68899999999999999986544  8999999999999999985 3 379999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++. .++. +. .+++|++|++++|.+++..+  +..+++|++|++++|.+++. +. +..                 
T Consensus       116 ~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~-----------------  171 (308)
T 1h6u_A          116 STQIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LAN-----------------  171 (308)
T ss_dssp             TSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTT-----------------
T ss_pred             CCCCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcC-----------------
Confidence            99998 4554 43 89999999999999986543  88999999999999998742 22 322                 


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS  240 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  240 (381)
                                                +++|+.|++++|.+++..+  +..+++|++|++++|.+++..  .+..+++|++
T Consensus       172 --------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~  221 (308)
T 1h6u_A          172 --------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFI  221 (308)
T ss_dssp             --------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred             --------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence                                      4568899999999985544  889999999999999998544  3788999999


Q ss_pred             EeccCCcCcc
Q 046668          241 IDFSANQLYG  250 (381)
Q Consensus       241 L~L~~n~l~~  250 (381)
                      |++++|.+++
T Consensus       222 L~l~~N~i~~  231 (308)
T 1h6u_A          222 VTLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEccCCeeec
Confidence            9999999984

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=5.5e-22  Score=180.54  Aligned_cols=239  Identities=14%  Similarity=0.111  Sum_probs=127.8

Q ss_pred             EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeC-CccccCCCCCCE-EeCcC
Q 046668            4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI-PASFQNCTKLVM-LDIGE   81 (381)
Q Consensus         4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~L~~   81 (381)
                      +++-++++++ .+|..+  .+++++|+|++|+|+.+.+++|.++++|++|+|++|.+.+.+ +.+|.+++++++ +.++.
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4455566666 445444  246666777777666555556666677777777766654333 345666666554 44455


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccC-CcCCCCcCccccccc-ccccccccCCcccc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLAD-NHLSGSIPKCISNIS-SMVTANFSIGTDVQ  159 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~l~~~~~~~~~  159 (381)
                      |++. .++...+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.++++.+....
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            6665 44433333566677777766666655444555555666666654 344422333444432 34445555444433


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccC-CcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSK-NKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                      ++....                    ...+|+.|++.+ |.++...+..|..+++|++|++++|+++ .+|.  ..+.+|
T Consensus       169 i~~~~f--------------------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L  225 (350)
T 4ay9_X          169 IHNSAF--------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENL  225 (350)
T ss_dssp             ECTTSS--------------------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTC
T ss_pred             CChhhc--------------------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccc
Confidence            222111                    123456666653 4444333445666666666666666666 3332  123445


Q ss_pred             CEEeccCCcCcccCchhhhCCCCCCeeeCCCC
Q 046668          239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNN  270 (381)
Q Consensus       239 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N  270 (381)
                      ++|.+.++.-...+|. +..+++|+.+++.++
T Consensus       226 ~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          226 KKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             CEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             hHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            5555444433334443 556666666666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.6e-23  Score=189.71  Aligned_cols=230  Identities=17%  Similarity=0.209  Sum_probs=183.0

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCccc-CCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGN-IPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      +++.|++++|.+.+..+. +.++++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            478999999999977665 55799999999999998865 7788899999999999999998888889999999999999


Q ss_pred             cCC-cCccc-CChhHHhcCCCCcEEEcccc-ccccc-CCcCccCCC-CCCEEeccCCc--CC-CCcCccccccccccccc
Q 046668           80 GEN-EFVGN-VPTWIGIRFSSLMILNLRSN-KFRGV-LPNQLCGLT-SLHVLDLADNH--LS-GSIPKCISNISSMVTAN  151 (381)
Q Consensus        80 ~~n-~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~l~  151 (381)
                      ++| .+.+. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++|.  ++ +.++..           
T Consensus       150 ~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-----------  217 (336)
T 2ast_B          150 SGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-----------  217 (336)
T ss_dssp             TTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-----------
T ss_pred             CCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-----------
Confidence            999 57643 454444 7999999999999 88854 466678899 99999999995  33 122222           


Q ss_pred             ccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCc-ccccCchhhhccccCcEEeCCCcc-cccccC
Q 046668          152 FSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK-FSGEIPSEIMNLRALVSLDLSCNS-FTGRIP  229 (381)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~  229 (381)
                                                      +..+++|+.|++++|. +++..+..+..+++|++|++++|. +.....
T Consensus       218 --------------------------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  265 (336)
T 2ast_B          218 --------------------------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  265 (336)
T ss_dssp             --------------------------------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             --------------------------------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence                                            2336679999999998 776777789999999999999995 333333


Q ss_pred             hhhhccCCCCEEeccCCcCcccCchhhhCC-CCCCeeeCCCCcceecCCCC
Q 046668          230 NSIGALESILSIDFSANQLYGEIPQSISSL-TFLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       230 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~  279 (381)
                      ..++.+++|++|++++| ++..   .+..+ ..++.|++++|++++..|..
T Consensus       266 ~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          266 LELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence            36788999999999999 5432   23333 24777889999999877753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=6.7e-22  Score=179.98  Aligned_cols=222  Identities=16%  Similarity=0.170  Sum_probs=168.7

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCccc-CCccCCCCCCCCE-EEccCCccceeCCccccCCCCCCEEe
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGN-IPISLGMLSSLQS-LNLRKNSLSGQIPASFQNCTKLVMLD   78 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~   78 (381)
                      ++++|+|++|+|+.+.+++|.++++|++|+|++|.+.+. .+.+|.+++++++ +.+.+|.++...|++|.++++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            478999999999976667899999999999999998654 4568899998876 56677999988899999999999999


Q ss_pred             CcCCcCcccCChhHHhcCCCCcEEEccc-ccccccCCcCccCCC-CCCEEeccCCcCCCCcCcccccccccccccccC-C
Q 046668           79 IGENEFVGNVPTWIGIRFSSLMILNLRS-NKFRGVLPNQLCGLT-SLHVLDLADNHLSGSIPKCISNISSMVTANFSI-G  155 (381)
Q Consensus        79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~-~  155 (381)
                      +++|++. .+|...+....++..|++.+ +.+....+..|..+. .+++|++++|+++ .++.......+++.+++.. +
T Consensus       111 l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCT
T ss_pred             ccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCC
Confidence            9999998 55554443667788899865 567766667777775 6899999999998 4555555567788887764 3


Q ss_pred             ccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhcc
Q 046668          156 TDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGAL  235 (381)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  235 (381)
                      ....++..                   .+..+++|+.|++++|+++..++..+.++++|+.+++  +.++ .+|. +..+
T Consensus       189 ~l~~i~~~-------------------~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP~-l~~l  245 (350)
T 4ay9_X          189 NLEELPND-------------------VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT-LEKL  245 (350)
T ss_dssp             TCCCCCTT-------------------TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCCC-TTTC
T ss_pred             cccCCCHH-------------------HhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCCC-chhC
Confidence            33333321                   2345788999999999999665555554444444333  3344 6664 7889


Q ss_pred             CCCCEEeccCCc
Q 046668          236 ESILSIDFSANQ  247 (381)
Q Consensus       236 ~~L~~L~L~~n~  247 (381)
                      ++|+.++++++.
T Consensus       246 ~~L~~l~l~~~~  257 (350)
T 4ay9_X          246 VALMEASLTYPS  257 (350)
T ss_dssp             CSCCEEECSCHH
T ss_pred             cChhhCcCCCCc
Confidence            999999998764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=1.6e-21  Score=189.14  Aligned_cols=229  Identities=23%  Similarity=0.318  Sum_probs=156.1

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|.++ .+|.   .+++|++|+|++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|+.|+++
T Consensus        62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~  129 (622)
T 3g06_A           62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF  129 (622)
T ss_dssp             TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred             CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence            4678888888877 4454   46778888888888773 444   56777777777777764 333   45566666666


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCc-----------------cCCCCCCEEeccCCcCCCCcCccccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL-----------------CGLTSLHVLDLADNHLSGSIPKCISN  143 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~l~~L~~L~L~~n~l~~~~~~~~~~  143 (381)
                      +|++. .+|.    .+++|++|++++|.+++ +|..+                 ..+++|+.|++++|.+++ +|..   
T Consensus       130 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~---  199 (622)
T 3g06_A          130 GNQLT-SLPV----LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL---  199 (622)
T ss_dssp             SSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---
T ss_pred             CCCCC-cCCC----CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---
Confidence            66665 3443    23556666666665553 22111                 223788899999998874 4543   


Q ss_pred             ccccccccccCCccccCCCCCCCccccceEEEEeccccchh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCCc
Q 046668          144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCN  222 (381)
Q Consensus       144 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n  222 (381)
                      +++|+.++++.+....++...    .......+.++.+..+ ..+++|+.|++++|+++. +|.   .+++|+.|+|++|
T Consensus       200 ~~~L~~L~L~~N~l~~l~~~~----~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          200 PSELYKLWAYNNRLTSLPALP----SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             CTTCCEEECCSSCCSSCCCCC----TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred             cchhhEEECcCCcccccCCCC----CCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCC
Confidence            367777777777766655432    1222233333322221 346889999999999984 444   6789999999999


Q ss_pred             ccccccChhhhccCCCCEEeccCCcCcccCchhhhCCC
Q 046668          223 SFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT  260 (381)
Q Consensus       223 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  260 (381)
                      .++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus       272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            999 7899999999999999999999988888776554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.2e-21  Score=165.01  Aligned_cols=161  Identities=23%  Similarity=0.255  Sum_probs=80.7

Q ss_pred             CCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEec
Q 046668           49 SLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDL  128 (381)
Q Consensus        49 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (381)
                      +|++|++++|.+++..+..|.++++|++|++++|++. .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4444444444444433344444445555555544444 333332224445555555555544333344455555555555


Q ss_pred             cCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhh
Q 046668          129 ADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI  208 (381)
Q Consensus       129 ~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~  208 (381)
                      ++|.+++..+..+..                                           +++|+.|++++|++++..+..+
T Consensus       108 ~~N~l~~~~~~~~~~-------------------------------------------l~~L~~L~l~~N~l~~~~~~~~  144 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDK-------------------------------------------LTQLKDLRLYQNQLKSVPDGVF  144 (208)
T ss_dssp             CSSCCCCCCTTTTTT-------------------------------------------CTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCcCcccCHhHhcc-------------------------------------------CCcCCEEECCCCccceeCHHHh
Confidence            555554322222222                                           2234555555555554444445


Q ss_pred             hccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCC
Q 046668          209 MNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT  260 (381)
Q Consensus       209 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  260 (381)
                      ..+++|++|++++|.+.+       .++.|+.|++..|.+++.+|..++.++
T Consensus       145 ~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          145 DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            666666666666665542       234566666666777666666655544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.1e-21  Score=165.14  Aligned_cols=181  Identities=21%  Similarity=0.231  Sum_probs=147.7

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            46778888877 455544  468999999999999877778999999999999999999777778899999999999999


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCC
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPS  162 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~  162 (381)
                      ++. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..                   
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-------------------  146 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR-------------------  146 (208)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-------------------
T ss_pred             cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc-------------------
Confidence            998 566555448999999999999999777777899999999999999998554444544                   


Q ss_pred             CCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668          163 VSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES  237 (381)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  237 (381)
                                              +++|+.|++++|.+.+       .++.|+.|+++.|.+++.+|.+++.++.
T Consensus       147 ------------------------l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          147 ------------------------LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ------------------------CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ------------------------CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                                    3447777888887653       3557888888888888888887776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=3.2e-21  Score=184.80  Aligned_cols=95  Identities=24%  Similarity=0.380  Sum_probs=62.9

Q ss_pred             CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668           25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL  104 (381)
Q Consensus        25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  104 (381)
                      +|+.|+|++|.+++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|++++|++.+ +|. +. .  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEEC
Confidence            67777777777764 454442  66777777777776 455   346677777777777763 665 33 2  7777777


Q ss_pred             ccccccccCCcCccCCCCCCEEeccCCcCCC
Q 046668          105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLSG  135 (381)
Q Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  135 (381)
                      ++|.+++ +|.   .+++|++|++++|.+++
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence            7777775 444   46677777777777763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=3.7e-22  Score=169.35  Aligned_cols=157  Identities=20%  Similarity=0.229  Sum_probs=111.1

Q ss_pred             EEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcccccccccccccccC
Q 046668           76 MLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI  154 (381)
Q Consensus        76 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~  154 (381)
                      .+++++|.+. .+|..+.   ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..           
T Consensus        15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            4555555554 4454332   334556666666554433 33556666666666666665433333333           


Q ss_pred             CccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhc
Q 046668          155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA  234 (381)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  234 (381)
                                                      +++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..+..
T Consensus        80 --------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  127 (220)
T 2v70_A           80 --------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG  127 (220)
T ss_dssp             --------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred             --------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC
Confidence                                            333666666667676666777888899999999999999777888899


Q ss_pred             cCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668          235 LESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       235 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  279 (381)
                      +++|++|++++|.+++..|..+..+++|+.|++++|++.|.|+..
T Consensus       128 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            999999999999999888888999999999999999999988754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=4e-21  Score=175.55  Aligned_cols=107  Identities=25%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             CCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCcccc-CCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668           26 LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQ-NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL  104 (381)
Q Consensus        26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  104 (381)
                      -++++++++.++ .+|..+.  ..+++|+|++|.+++..+..|. ++++|++|+|++|++. .++...+..+++|++|+|
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence            357777777777 4555544  4577777777777766666666 7777777777777776 344333336677777777


Q ss_pred             ccccccccCCcCccCCCCCCEEeccCCcCCCC
Q 046668          105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLSGS  136 (381)
Q Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  136 (381)
                      ++|.++...+..|..+++|++|++++|.+...
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV  127 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEE
Confidence            77777655555666666677776666666533

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=5.7e-21  Score=162.04  Aligned_cols=157  Identities=19%  Similarity=0.255  Sum_probs=118.2

Q ss_pred             CEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccC
Q 046668           75 VMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSI  154 (381)
Q Consensus        75 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~  154 (381)
                      +.++.+++.++ .+|..+.   +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.+           
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-----------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-----------
Confidence            45566666665 5555432   46677777777776665566777777777777777776554555544           


Q ss_pred             CccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhc
Q 046668          155 GTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGA  234 (381)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  234 (381)
                                                      +++|+.|++++|+++...+..|..+++|++|+|++|.+++..|..|..
T Consensus        79 --------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  126 (220)
T 2v9t_B           79 --------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD  126 (220)
T ss_dssp             --------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             --------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC
Confidence                                            334666777777777566666788899999999999999877888999


Q ss_pred             cCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668          235 LESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       235 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  278 (381)
                      +++|++|+|++|.+++..+..+..+++|+.|++++|++.|.|+.
T Consensus       127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            99999999999999977777888999999999999999998874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=3.2e-21  Score=184.79  Aligned_cols=188  Identities=27%  Similarity=0.397  Sum_probs=135.1

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|+.|++++|++++ +|..+  +++|++|+|++|.++ .+|   ..+++|++|++++|.+++ +|. +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            46788888888875 56554  367888888888887 455   346788888888888875 555 554  88888888


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|++.+ +|.    .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. +.                  
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------  179 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------  179 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence            888874 666    46788888888888885 454   46788888888888774 443 32                  


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccC-------cEEeCCCcccccccChhhh
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRAL-------VSLDLSCNSFTGRIPNSIG  233 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~  233 (381)
                                                 ++|+.|++++|+++ .+|. +..  +|       +.|+|++|.++ .+|..+.
T Consensus       180 ---------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~  227 (571)
T 3cvr_A          180 ---------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL  227 (571)
T ss_dssp             ---------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG
T ss_pred             ---------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh
Confidence                                       23777788888777 4444 443  56       88888888887 6777777


Q ss_pred             ccCCCCEEeccCCcCcccCchhhhCCC
Q 046668          234 ALESILSIDFSANQLYGEIPQSISSLT  260 (381)
Q Consensus       234 ~l~~L~~L~L~~n~l~~~~~~~l~~l~  260 (381)
                      .+++|++|++++|.+++.+|..+..++
T Consensus       228 ~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          228 SLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             GSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             cCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            788888888888888877777665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.5e-20  Score=171.83  Aligned_cols=179  Identities=24%  Similarity=0.254  Sum_probs=148.6

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCC-CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLG-MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      +.+++++++++ .+|..+.  +.++.|+|++|.+++..+..|. ++++|++|+|++|.+++..+.+|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57899999998 5676553  4699999999999988888887 999999999999999988889999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |++. .++...+..+++|++|+|++|.+....+..|..+++|++|++++|.++...+..+..+                 
T Consensus        98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-----------------  159 (361)
T 2xot_A           98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-----------------  159 (361)
T ss_dssp             SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred             CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc-----------------
Confidence            9998 5665555589999999999999998889999999999999999999984332323211                 


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhcccc--CcEEeCCCcccc
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRA--LVSLDLSCNSFT  225 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~Ls~n~l~  225 (381)
                                             ..+++|+.|++++|+++...+..+..++.  ++.|+|++|.+.
T Consensus       160 -----------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          160 -----------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             -------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             -----------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence                                   12556888999999988766677888776  478888888776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=8.7e-21  Score=167.96  Aligned_cols=171  Identities=20%  Similarity=0.304  Sum_probs=91.4

Q ss_pred             CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCE
Q 046668           46 MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHV  125 (381)
Q Consensus        46 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  125 (381)
                      .+++|++|++++|.+... + .+..+++|++|++++|++. .++. +. .+++|++|++++|.+++.  ..+..+++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  116 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence            345555555555555422 2 2455555555555555554 2322 22 455555555555555532  22555566666


Q ss_pred             EeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCc
Q 046668          126 LDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP  205 (381)
Q Consensus       126 L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  205 (381)
                      |++++|.+.+.  ..+..                                           +++|+.|++++|++++.  
T Consensus       117 L~L~~n~i~~~--~~l~~-------------------------------------------l~~L~~L~l~~n~l~~~--  149 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVH-------------------------------------------LPQLESLYLGNNKITDI--  149 (291)
T ss_dssp             EECTTSCCCCC--GGGGG-------------------------------------------CTTCCEEECCSSCCCCC--
T ss_pred             EECCCCcCCCC--hhhcC-------------------------------------------CCCCCEEEccCCcCCcc--
Confidence            66666655421  11111                                           33455555666655533  


Q ss_pred             hhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668          206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       206 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                      ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus       150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            345666666666666666664333  5666666666666666663 33 25666666666666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=3.9e-20  Score=157.91  Aligned_cols=157  Identities=22%  Similarity=0.262  Sum_probs=120.5

Q ss_pred             CCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccccccccc
Q 046668           74 LVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFS  153 (381)
Q Consensus        74 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~  153 (381)
                      .+.++.+++++. .+|..+   .++|++|++++|.+++..+..|..+++|++|++++|++....+..|..          
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence            445666666665 566544   266777777777777666677777777777777777775333333333          


Q ss_pred             CCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhh
Q 046668          154 IGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIG  233 (381)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  233 (381)
                                                       +++|+.|++++|++++..+..|..+++|++|++++|.++ .+|..+.
T Consensus        87 ---------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  132 (229)
T 3e6j_A           87 ---------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE  132 (229)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred             ---------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence                                             344777777788877666777888999999999999998 7888889


Q ss_pred             ccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668          234 ALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       234 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  278 (381)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|++.|.|+.
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            999999999999999977777788999999999999999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=5.4e-20  Score=156.00  Aligned_cols=151  Identities=22%  Similarity=0.261  Sum_probs=136.5

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +.++++++.++ .+|..+.  ++|+.|++++|.++++.+..|..+++|++|+|++|.+++..|.+|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            46889999988 5676553  78999999999999888889999999999999999999888999999999999999999


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD  157 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~  157 (381)
                      ++. .+|...+..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.++++.+..
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            998 78877766899999999999999988889999999999999999999977778899999999999887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.83  E-value=1.6e-20  Score=181.74  Aligned_cols=172  Identities=21%  Similarity=0.317  Sum_probs=88.0

Q ss_pred             cCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCc
Q 046668           21 MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM  100 (381)
Q Consensus        21 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  100 (381)
                      ..+++|+.|++++|.+.. ++ .|..+++|++|+|++|.+.+..+  +.++++|+.|+|++|.+. .+| .+. .+++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~  112 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLK-DLKKLK  112 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TST-TCTTCC
T ss_pred             hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhc-cCCCCC
Confidence            345555555665555552 22 35555555666665555553332  555555555555555554 233 222 455555


Q ss_pred             EEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccc
Q 046668          101 ILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA  180 (381)
Q Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (381)
                      +|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+.                                      
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~--------------------------------------  150 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS--------------------------------------  150 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG--------------------------------------
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc--------------------------------------
Confidence            555555555532  2345555555555555555421  1111                                      


Q ss_pred             cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcc
Q 046668          181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG  250 (381)
Q Consensus       181 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  250 (381)
                           .+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|.+++
T Consensus       151 -----~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          151 -----RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -----SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred             -----ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence                 13345555555555554433  5555556666666655553 22 35555555666665555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=7.6e-20  Score=161.92  Aligned_cols=185  Identities=20%  Similarity=0.294  Sum_probs=148.8

Q ss_pred             cCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcc
Q 046668            7 LGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG   86 (381)
Q Consensus         7 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   86 (381)
                      +..+.+++.  ..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++..+  +.++++|++|++++|.+. 
T Consensus        31 l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-  103 (291)
T 1h6t_A           31 LKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-  103 (291)
T ss_dssp             TTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             hcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-
Confidence            444444433  2245789999999999999854 3 47889999999999999986544  899999999999999997 


Q ss_pred             cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCC
Q 046668           87 NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTG  166 (381)
Q Consensus        87 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  166 (381)
                      .++. +. .+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+.                        
T Consensus       104 ~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~------------------------  153 (291)
T 1h6t_A          104 DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS------------------------  153 (291)
T ss_dssp             CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG------------------------
T ss_pred             CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc------------------------
Confidence            4554 44 789999999999999854  5688899999999999998743  2222                        


Q ss_pred             ccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCC
Q 046668          167 KYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN  246 (381)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  246 (381)
                                         .+++|+.|++++|++++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus       154 -------------------~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          154 -------------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             -------------------GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEE
T ss_pred             -------------------cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCC
Confidence                               25668999999999986555  8899999999999999984 44 4888999999999999


Q ss_pred             cCccc
Q 046668          247 QLYGE  251 (381)
Q Consensus       247 ~l~~~  251 (381)
                      .++..
T Consensus       211 ~i~~~  215 (291)
T 1h6t_A          211 ECLNK  215 (291)
T ss_dssp             EEECC
T ss_pred             cccCC
Confidence            98753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=4.2e-22  Score=194.23  Aligned_cols=295  Identities=14%  Similarity=0.082  Sum_probs=159.1

Q ss_pred             CccEEEcCCCccccc----CCccccCCCCCCEEECcCCcCc----ccCCccCCCCCCCCEEEccCCccceeCCccccCCC
Q 046668            1 GIRILKLGENHFSGE----IPDCWMNWLDLLVLNLGNNNFT----GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCT   72 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   72 (381)
                      +|++|+|++|.+++.    ++..+.++++|++|++++|.++    +.++..+.++++|++|++++|.+.+ ++..+.+++
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~  243 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA  243 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh
Confidence            356666666665543    2223445666666666666654    2223334456667777777666553 344445555


Q ss_pred             CCCEEeCcC---------------------------CcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCC
Q 046668           73 KLVMLDIGE---------------------------NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLH  124 (381)
Q Consensus        73 ~L~~L~L~~---------------------------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  124 (381)
                      +|++|+++.                           +.. +.+|..+. .+++|++|++++|.+++... ..+..+++|+
T Consensus       244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             HHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            555555442                           111 12343333 57788899998888654332 3356788888


Q ss_pred             EEeccCCcCCCCcCcccccccccccccccC----------CccccCCCCCC--CccccceEEEE-----eccccchhhh-
Q 046668          125 VLDLADNHLSGSIPKCISNISSMVTANFSI----------GTDVQYPSVST--GKYVEDALLVL-----KGKAVEYNTI-  186 (381)
Q Consensus       125 ~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~----------~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~-  186 (381)
                      +|+++++.....++.....+++|+.++++.          +..........  ..........+     .+..+..+.. 
T Consensus       322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~  401 (592)
T 3ogk_B          322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY  401 (592)
T ss_dssp             EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred             EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence            888883322223333445677788877773          21111000000  00011111111     1222222332 


Q ss_pred             cccccEEEcc----CCccccc-----CchhhhccccCcEEeCCCcc--cccccChhhh-ccCCCCEEeccCCcCcc-cCc
Q 046668          187 LKLMRLIDLS----KNKFSGE-----IPSEIMNLRALVSLDLSCNS--FTGRIPNSIG-ALESILSIDFSANQLYG-EIP  253 (381)
Q Consensus       187 ~~~L~~L~L~----~n~~~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~  253 (381)
                      +++|+.|+++    .|.+++.     ++..+.++++|++|+++.|.  +++..+..+. .+++|++|++++|.+++ .++
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            6778888885    4556543     22335667778888776433  5544444443 36778888888887764 234


Q ss_pred             hhhhCCCCCCeeeCCCCcceec-CCC-CCCCCccCCCcccCCCCCCC
Q 046668          254 QSISSLTFLSRLKLSNNNLSGK-IPL-STQLQSFDPSSFTGNRLCGS  298 (381)
Q Consensus       254 ~~l~~l~~L~~L~l~~N~l~~~-~~~-~~~l~~l~~~~~~~n~l~~~  298 (381)
                      ..+..+++|++|++++|+++.. ++. ...++.|+.+++++|.+++.
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            4556777788888888876532 111 12356677777777765543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=3e-19  Score=151.35  Aligned_cols=151  Identities=23%  Similarity=0.288  Sum_probs=132.8

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCC-ccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIP-ISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      +.+++++|.++ .+|..+.  ..+++|+|++|.+++..+ ..|..+++|++|++++|.+++..+.+|.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            57899999998 4676553  467899999999997755 5688999999999999999988888999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD  157 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~  157 (381)
                      |++. .++...+..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.++++.+..
T Consensus        91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            9998 55555455899999999999999988899999999999999999999988899999999999999887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=2.8e-19  Score=152.55  Aligned_cols=150  Identities=25%  Similarity=0.275  Sum_probs=101.2

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +.++.++++++ .+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++|+|++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            35666666666 4554432  67777777777777666777777777777777777776555566677777777777777


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD  157 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~  157 (381)
                      ++. .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.+++..+..
T Consensus        99 ~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           99 QLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             cCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            776 455444446777777777777777 5566667777777777777777755555667777777777666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=2.4e-19  Score=173.56  Aligned_cols=169  Identities=25%  Similarity=0.330  Sum_probs=138.2

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+  +..+++|++|+|++|.+.+ ++ .+..+++|++|+|+
T Consensus        44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            47889999999984 34 58899999999999999996555  8899999999999999984 34 79999999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      +|.+. .++ .+. .+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..                 
T Consensus       118 ~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~-----------------  173 (605)
T 1m9s_A          118 HNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG-----------------  173 (605)
T ss_dssp             TSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT-----------------
T ss_pred             CCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc-----------------
Confidence            99998 454 344 799999999999999965  678999999999999999986544  444                 


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccc
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGR  227 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  227 (381)
                                                +++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+.
T Consensus       174 --------------------------l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          174 --------------------------LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             --------------------------CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             --------------------------CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence                                      44477777777777643  3477777888888888777643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=1.1e-20  Score=184.08  Aligned_cols=273  Identities=12%  Similarity=0.018  Sum_probs=165.9

Q ss_pred             CccEEEcCCCcccc----cCCccccCCCCCCEEECcCCcCcccCCccC---------------------------CCCCC
Q 046668            1 GIRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNNFTGNIPISL---------------------------GMLSS   49 (381)
Q Consensus         1 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------------------~~l~~   49 (381)
                      +|++|++++|.+++    .++..+.++++|++|++++|.+.+ ++..+                           ..+++
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            47788888887762    334445667888888888877653 23333                           34444


Q ss_pred             CCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEecc
Q 046668           50 LQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLA  129 (381)
Q Consensus        50 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  129 (381)
                      |+.|+++++.. ..+|..+..+++|++|++++|.+.+.....+...+++|++|+++++-....++..+..+++|++|+++
T Consensus       272 L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          272 LCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             CCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            44444444322 24566677788889999988886543333334467888888887432222333334556778888877


Q ss_pred             C-----------CcCCCC-cCcccccccccccccccCCccccCCCCCCC-ccccceEEEEe----cc----------ccc
Q 046668          130 D-----------NHLSGS-IPKCISNISSMVTANFSIGTDVQYPSVSTG-KYVEDALLVLK----GK----------AVE  182 (381)
Q Consensus       130 ~-----------n~l~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~----------~~~  182 (381)
                      +           +.+++. ++.....+++|+.+++..+........... .........+.    .+          ...
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~  430 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS  430 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence            3           344322 112234466677766633322110000000 00011111221    11          112


Q ss_pred             hhhhcccccEEEccCCc--ccccCchhhh-ccccCcEEeCCCccccc-ccChhhhccCCCCEEeccCCcCccc-Cchhhh
Q 046668          183 YNTILKLMRLIDLSKNK--FSGEIPSEIM-NLRALVSLDLSCNSFTG-RIPNSIGALESILSIDFSANQLYGE-IPQSIS  257 (381)
Q Consensus       183 ~~~~~~~L~~L~L~~n~--~~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~  257 (381)
                      ....+++|+.|++++|.  +++..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++....
T Consensus       431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence            24568999999998643  5555444444 48999999999999986 3455567889999999999998754 445557


Q ss_pred             CCCCCCeeeCCCCcceec
Q 046668          258 SLTFLSRLKLSNNNLSGK  275 (381)
Q Consensus       258 ~l~~L~~L~l~~N~l~~~  275 (381)
                      .+++|++|++++|+++..
T Consensus       511 ~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HCSSCCEEEEESCBCCTT
T ss_pred             hcCccCeeECcCCcCCHH
Confidence            899999999999998753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=8.1e-19  Score=146.17  Aligned_cols=80  Identities=23%  Similarity=0.336  Sum_probs=47.6

Q ss_pred             ccEEEccCCcccccCchhhhccccCcEEeCCCcc-cccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCC
Q 046668          190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS-FTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLS  268 (381)
Q Consensus       190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  268 (381)
                      |+.|++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+++ ++ .+..+++|+.|+++
T Consensus       114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred             CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence            4445555555554455556666666677776666 44 444 46666777777777777664 33 45666777777777


Q ss_pred             CCcce
Q 046668          269 NNNLS  273 (381)
Q Consensus       269 ~N~l~  273 (381)
                      +|++.
T Consensus       190 ~N~i~  194 (197)
T 4ezg_A          190 SQTIG  194 (197)
T ss_dssp             BC---
T ss_pred             CcccC
Confidence            77654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=1.4e-19  Score=157.71  Aligned_cols=170  Identities=21%  Similarity=0.312  Sum_probs=105.5

Q ss_pred             CCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668           22 NWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI  101 (381)
Q Consensus        22 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  101 (381)
                      .+.+++.++++++.+++..  .+..+++|++|++++|.++ .++ .+..+++|++|++++|++. .++. +. .+++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCE
Confidence            4555666777777776433  4566777778888777776 344 5777778888888888776 4444 33 6777888


Q ss_pred             EEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecccc
Q 046668          102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAV  181 (381)
Q Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (381)
                      |++++|.+++. +. +.. ++|++|++++|++++. + .+..                                      
T Consensus        90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~--------------------------------------  126 (263)
T 1xeu_A           90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIH--------------------------------------  126 (263)
T ss_dssp             EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTT--------------------------------------
T ss_pred             EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcC--------------------------------------
Confidence            88888877743 32 222 6777777777776631 1 1211                                      


Q ss_pred             chhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcc
Q 046668          182 EYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG  250 (381)
Q Consensus       182 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  250 (381)
                           +++|+.|++++|++++. + .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.++.
T Consensus       127 -----l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          127 -----LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             -----CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             -----cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence                 33456666666666543 2 455666666666666666633  445556666666666666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=9.8e-19  Score=145.66  Aligned_cols=154  Identities=22%  Similarity=0.266  Sum_probs=115.3

Q ss_pred             CCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCC
Q 046668           45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLH  124 (381)
Q Consensus        45 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (381)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ .+. .+++|++|++++|.+++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            45678888888888887 455 5788888888888888664 333 444 688888888888888877777888888888


Q ss_pred             EEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCc-cccc
Q 046668          125 VLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK-FSGE  203 (381)
Q Consensus       125 ~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~  203 (381)
                      +|++++|.+++..+..+..                                           +++|+.|++++|. +. .
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~-------------------------------------------l~~L~~L~L~~n~~i~-~  151 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINT-------------------------------------------LPKVNSIDLSYNGAIT-D  151 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTT-------------------------------------------CSSCCEEECCSCTBCC-C
T ss_pred             EEEecCCccCcHhHHHHhh-------------------------------------------CCCCCEEEccCCCCcc-c
Confidence            9988888887655555544                                           4457778888887 54 4


Q ss_pred             CchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcc
Q 046668          204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYG  250 (381)
Q Consensus       204 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  250 (381)
                      +| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.+
T Consensus       152 ~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          152 IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            44 58888999999999999884 44 67888999999999998763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=3e-19  Score=155.66  Aligned_cols=171  Identities=19%  Similarity=0.281  Sum_probs=143.1

Q ss_pred             CCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCE
Q 046668           46 MLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHV  125 (381)
Q Consensus        46 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  125 (381)
                      .+.+++.++++++.+++..  .+..+++|++|++++|++. .++ .+. .+++|++|++++|.+++..+  +..+++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            4667888899999988543  6889999999999999997 677 444 78999999999999996544  899999999


Q ss_pred             EeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCc
Q 046668          126 LDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP  205 (381)
Q Consensus       126 L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  205 (381)
                      |++++|++++ +|...                                             .++|+.|++++|++++.  
T Consensus        90 L~L~~N~l~~-l~~~~---------------------------------------------~~~L~~L~L~~N~l~~~--  121 (263)
T 1xeu_A           90 LSVNRNRLKN-LNGIP---------------------------------------------SACLSRLFLDNNELRDT--  121 (263)
T ss_dssp             EECCSSCCSC-CTTCC---------------------------------------------CSSCCEEECCSSCCSBS--
T ss_pred             EECCCCccCC-cCccc---------------------------------------------cCcccEEEccCCccCCC--
Confidence            9999999874 22210                                             03489999999999864  


Q ss_pred             hhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceec
Q 046668          206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGK  275 (381)
Q Consensus       206 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  275 (381)
                      ..+..+++|++|++++|++++ ++ .+..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+.
T Consensus       122 ~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          122 DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            358999999999999999995 44 688999999999999999965  6688999999999999999865

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=4.1e-19  Score=147.25  Aligned_cols=92  Identities=20%  Similarity=0.292  Sum_probs=69.9

Q ss_pred             ccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeC
Q 046668          188 KLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKL  267 (381)
Q Consensus       188 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  267 (381)
                      ++|+.|++++|++++..|..|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence            34566666666666666677777788888888888887766777777888888888888888777777888888888888


Q ss_pred             CCCcceecCCCC
Q 046668          268 SNNNLSGKIPLS  279 (381)
Q Consensus       268 ~~N~l~~~~~~~  279 (381)
                      ++|++.|.|+..
T Consensus       134 ~~N~l~c~c~l~  145 (192)
T 1w8a_A          134 ASNPFNCNCHLA  145 (192)
T ss_dssp             TTCCBCCSGGGH
T ss_pred             CCCCccCcCcch
Confidence            888888877653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=2.4e-21  Score=186.38  Aligned_cols=178  Identities=21%  Similarity=0.274  Sum_probs=112.9

Q ss_pred             CCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc-------------CcccCChhHHhcCCCCcEEE-cccc---
Q 046668           45 GMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE-------------FVGNVPTWIGIRFSSLMILN-LRSN---  107 (381)
Q Consensus        45 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~~l~~L~~L~-L~~n---  107 (381)
                      ..+++|+.|+|++|.++ .+|..+.++++|+.|++++|.             ..+..|..+. .+++|+.|+ ++.|   
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~-~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ-YFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH-HHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH-HHHhcccCcchhhcccc
Confidence            34556666666666665 456666666666666665543             2333333333 455566655 3333   


Q ss_pred             ----------cccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEe
Q 046668          108 ----------KFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK  177 (381)
Q Consensus       108 ----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (381)
                                .+....+      ..|+.|++++|.+++ +|. ++.                                  
T Consensus       424 ~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~----------------------------------  461 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ----------------------------------  461 (567)
T ss_dssp             HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG----------------------------------
T ss_pred             hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc----------------------------------
Confidence                      3332111      247788888888773 443 433                                  


Q ss_pred             ccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccC-chhh
Q 046668          178 GKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEI-PQSI  256 (381)
Q Consensus       178 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l  256 (381)
                               +++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+|++|.+++.. |..+
T Consensus       462 ---------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          462 ---------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             ---------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred             ---------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence                     444777777777777 666777777888888888887774 55 6777778888888888777665 7777


Q ss_pred             hCCCCCCeeeCCCCcceecCCC
Q 046668          257 SSLTFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       257 ~~l~~L~~L~l~~N~l~~~~~~  278 (381)
                      ..+++|+.|++++|++++..|.
T Consensus       530 ~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          530 VSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             GGCTTCCEEECTTSGGGGSSSC
T ss_pred             hcCCCCCEEEecCCcCCCCccH
Confidence            7777888888888877766553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=2.1e-18  Score=139.88  Aligned_cols=129  Identities=21%  Similarity=0.245  Sum_probs=64.1

Q ss_pred             ccEEEcCCCccc-ccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            2 IRILKLGENHFS-GEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         2 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      |++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..|..+++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            455555555554 44444455555555555555555433  445555555555555555554444444455555555555


Q ss_pred             CCcCcccCC--hhHHhcCCCCcEEEcccccccccCC---cCccCCCCCCEEeccCCcCC
Q 046668           81 ENEFVGNVP--TWIGIRFSSLMILNLRSNKFRGVLP---NQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus        81 ~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~  134 (381)
                      +|.+. .+|  ..+. .+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       104 ~N~l~-~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          104 GNKLK-DISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             SSSCC-SSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCccC-cchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            55554 222  2222 45555555555555553322   24455555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=3.8e-19  Score=176.28  Aligned_cols=180  Identities=19%  Similarity=0.194  Sum_probs=77.4

Q ss_pred             CCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccC
Q 046668           40 IPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG  119 (381)
Q Consensus        40 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  119 (381)
                      .++.|..++.|++|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..+. .+++|++|+|++|.++ .+|..+..
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcC
Confidence            3445555555555666555555 44444445555555555555555 5555444 5555555555555555 44555555


Q ss_pred             CCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCc
Q 046668          120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNK  199 (381)
Q Consensus       120 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  199 (381)
                      +++|++|+|++|.++ .+|..|+.                                           +++|+.|+|++|.
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~-------------------------------------------l~~L~~L~L~~N~  327 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGN-------------------------------------------LCNLQFLGVEGNP  327 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTS-------------------------------------------CTTCCCEECTTSC
T ss_pred             CCCCCEEECCCCCCC-ccChhhhc-------------------------------------------CCCccEEeCCCCc
Confidence            555555555555554 44444433                                           3446666666666


Q ss_pred             ccccCchhhhcccc-CcEEeCCCcccccccChhhhccCCCCEEeccCC--------cCcccCchhhhCCCCCCeeeCCCC
Q 046668          200 FSGEIPSEIMNLRA-LVSLDLSCNSFTGRIPNSIGALESILSIDFSAN--------QLYGEIPQSISSLTFLSRLKLSNN  270 (381)
Q Consensus       200 ~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~l~~N  270 (381)
                      +++.+|..+..+.. +..++|++|.+++.+|.      .|+.|++++|        .+.+..+..+..+..+....+++|
T Consensus       328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N  401 (727)
T 4b8c_D          328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN  401 (727)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------
T ss_pred             cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence            66666665544322 12356666666655553      3445555555        222222233334444555555666


Q ss_pred             cce
Q 046668          271 NLS  273 (381)
Q Consensus       271 ~l~  273 (381)
                      .+.
T Consensus       402 il~  404 (727)
T 4b8c_D          402 TLC  404 (727)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=2.5e-19  Score=177.60  Aligned_cols=137  Identities=24%  Similarity=0.295  Sum_probs=108.4

Q ss_pred             cEEEcCCCcccc---------cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCC
Q 046668            3 RILKLGENHFSG---------EIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTK   73 (381)
Q Consensus         3 ~~L~l~~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   73 (381)
                      +.++|+.+.|.+         ..++.|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|.++++
T Consensus       194 ~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  271 (727)
T 4b8c_D          194 QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN  271 (727)
T ss_dssp             ----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred             hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence            445555555443         44777899999999999999998 66767778999999999999999 88999999999


Q ss_pred             CCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccc
Q 046668           74 LVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI  144 (381)
Q Consensus        74 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  144 (381)
                      |++|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+..+
T Consensus       272 L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          272 LRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             CCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             CCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            999999999998 8898887 8999999999999998 778889999999999999999998888776543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=9.8e-18  Score=138.91  Aligned_cols=132  Identities=26%  Similarity=0.323  Sum_probs=114.8

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCc-cCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPI-SLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      +.+++++++++ .+|..+..  +|++|++++|.+++..+. .|..+++|++|++++|.+++..|.+|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67999999997 67766543  899999999999877664 488999999999999999988899999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP  138 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  138 (381)
                      |++.+..+..+. .+++|++|+|++|.+++..|..+..+++|++|++++|.+.+..+
T Consensus        88 N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999855554444 79999999999999999889999999999999999999885543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=8e-20  Score=175.85  Aligned_cols=197  Identities=18%  Similarity=0.200  Sum_probs=118.2

Q ss_pred             cCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-------------cceeCCccccCCCCCCEEe-CcCCcCcc
Q 046668           21 MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-------------LSGQIPASFQNCTKLVMLD-IGENEFVG   86 (381)
Q Consensus        21 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~   86 (381)
                      ..+++|+.|+|++|.++ .+|..++++++|++|++++|.             ..+..|..+.++++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            34566777777777766 556666667777777765553             3345556666666666666 4554432 


Q ss_pred             cCChh------HH-hcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           87 NVPTW------IG-IRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        87 ~~~~~------~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      .++..      +. .....|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.                
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------  484 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA----------------  484 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------
Confidence            12110      00 012356677777777764 444 666777777777777766 55555444                


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCccccccc-ChhhhccCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRI-PNSIGALESI  238 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  238 (381)
                                                 +++|+.|++++|.+++ +| .++.+++|++|+|++|.+++.. |..++.+++|
T Consensus       485 ---------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          485 ---------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             ---------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence                                       3336666667776664 44 5667777777777777776554 6667777777


Q ss_pred             CEEeccCCcCcccCch---hhhCCCCCCeeeC
Q 046668          239 LSIDFSANQLYGEIPQ---SISSLTFLSRLKL  267 (381)
Q Consensus       239 ~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l  267 (381)
                      +.|++++|.+++..|.   .+..+++|+.|++
T Consensus       536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            7777777777654332   2234666666653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=4.7e-18  Score=134.88  Aligned_cols=126  Identities=21%  Similarity=0.245  Sum_probs=69.4

Q ss_pred             CCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEE
Q 046668           24 LDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMIL  102 (381)
Q Consensus        24 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  102 (381)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+.++++|++|++++|.+.+.+|..+. .+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEE
Confidence            45566666666655 44555555566666666666655533  4555566666666666665533444332 45666666


Q ss_pred             Eccccccccc-CCcCccCCCCCCEEeccCCcCCCCcC---cccccccccccccc
Q 046668          103 NLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIP---KCISNISSMVTANF  152 (381)
Q Consensus       103 ~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~l~~  152 (381)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            6666665542 22455556666666666666654333   34555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=2.2e-19  Score=175.09  Aligned_cols=199  Identities=14%  Similarity=0.084  Sum_probs=118.5

Q ss_pred             cCCCCcEEEcccccccccC-CcCccCCCCCCEEeccCCcCCCC-cCcccccccccccccccCCc------cccCCCCCC-
Q 046668           95 RFSSLMILNLRSNKFRGVL-PNQLCGLTSLHVLDLADNHLSGS-IPKCISNISSMVTANFSIGT------DVQYPSVST-  165 (381)
Q Consensus        95 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~~~~~~------~~~~~~~~~-  165 (381)
                      .+++|++|++++|.+++.. ...+..+++|++|++++| +... ++.....+++|+.+++..+.      ...+..... 
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            5789999999999876432 233567899999999988 4322 22223357888888773321      000000000 


Q ss_pred             ---CccccceEEEEecc-----ccchh-hhcccccEEEcc--C----CcccccC-----chhhhccccCcEEeCCCcccc
Q 046668          166 ---GKYVEDALLVLKGK-----AVEYN-TILKLMRLIDLS--K----NKFSGEI-----PSEIMNLRALVSLDLSCNSFT  225 (381)
Q Consensus       166 ---~~~~~~~~~~~~~~-----~~~~~-~~~~~L~~L~L~--~----n~~~~~~-----~~~~~~l~~L~~L~Ls~n~l~  225 (381)
                         ..........+...     ....+ ..+++|+.|+++  +    +.+++..     +..+..+++|++|++++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence               00011111111111     12222 247889999998  3    4454221     22356788899999977 566


Q ss_pred             cccChhhhc-cCCCCEEeccCCcCcccCchhh-hCCCCCCeeeCCCCcceecCC--CCCCCCccCCCcccCCCC
Q 046668          226 GRIPNSIGA-LESILSIDFSANQLYGEIPQSI-SSLTFLSRLKLSNNNLSGKIP--LSTQLQSFDPSSFTGNRL  295 (381)
Q Consensus       226 ~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~--~~~~l~~l~~~~~~~n~l  295 (381)
                      +..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|+++....  ....++.|+.+++.+|.+
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            555555554 7889999999988875544444 668889999999988854321  123456777777877755

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=6.8e-18  Score=139.89  Aligned_cols=93  Identities=26%  Similarity=0.316  Sum_probs=79.1

Q ss_pred             cccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeee
Q 046668          187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK  266 (381)
Q Consensus       187 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  266 (381)
                      +++|+.|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..+..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            34467777777777767777888899999999999999977778899999999999999999976667788999999999


Q ss_pred             CCCCcceecCCCC
Q 046668          267 LSNNNLSGKIPLS  279 (381)
Q Consensus       267 l~~N~l~~~~~~~  279 (381)
                      +++|++.|.|...
T Consensus       133 L~~N~~~C~c~l~  145 (193)
T 2wfh_A          133 IGANPLYCDCNMQ  145 (193)
T ss_dssp             CCSSCEECSGGGH
T ss_pred             eCCCCeecCCcCH
Confidence            9999999988753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.6e-17  Score=149.65  Aligned_cols=220  Identities=11%  Similarity=0.073  Sum_probs=151.0

Q ss_pred             CccEEEcCCCccc--------------------ccCCccccC--------CCCCCEEECcCCcCcccCCccCCCCCCCCE
Q 046668            1 GIRILKLGENHFS--------------------GEIPDCWMN--------WLDLLVLNLGNNNFTGNIPISLGMLSSLQS   52 (381)
Q Consensus         1 ~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   52 (381)
                      +|++|||++|++.                    .+.+.+|.+        +++|+.++|.+ .++.+.+.+|.+|++|++
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~  128 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI  128 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred             cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence            5899999999988                    233445667        88888888877 777677778888888888


Q ss_pred             EEccCCccceeCCccccCCCCCCEEeCcCCcCc---ccCChhHHhcCCCCc--------------------------EEE
Q 046668           53 LNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV---GNVPTWIGIRFSSLM--------------------------ILN  103 (381)
Q Consensus        53 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~l~~L~--------------------------~L~  103 (381)
                      |++++|.+..+.+.+|.++.++..+.+..+...   ..+....+..+..|+                          .+.
T Consensus       129 l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~  208 (329)
T 3sb4_A          129 CQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLT  208 (329)
T ss_dssp             EEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEE
T ss_pred             EEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEE
Confidence            888888877777778888777777766553210   011111122333333                          222


Q ss_pred             cccccccccCCcCc-cCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccc
Q 046668          104 LRSNKFRGVLPNQL-CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVE  182 (381)
Q Consensus       104 L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (381)
                      +.++-.. .....+ ..+++|+++++++|+++...+.+|.++.+                                    
T Consensus       209 ~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~------------------------------------  251 (329)
T 3sb4_A          209 IEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY------------------------------------  251 (329)
T ss_dssp             EEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT------------------------------------
T ss_pred             EeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC------------------------------------
Confidence            2211100 000011 13688999999999888555566766554                                    


Q ss_pred             hhhhcccccEEEccCCcccccCchhhhccccCc-EEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCC
Q 046668          183 YNTILKLMRLIDLSKNKFSGEIPSEIMNLRALV-SLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF  261 (381)
Q Consensus       183 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  261 (381)
                             |+.+++.+| +..+.+.+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++...+.+|.++++
T Consensus       252 -------L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~  322 (329)
T 3sb4_A          252 -------LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP  322 (329)
T ss_dssp             -------CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred             -------CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence                   666667666 6656777899999999 999988 677677788999999999999999998777788999999


Q ss_pred             CCeeeC
Q 046668          262 LSRLKL  267 (381)
Q Consensus       262 L~~L~l  267 (381)
                      |+.+..
T Consensus       323 L~~ly~  328 (329)
T 3sb4_A          323 SKLIYK  328 (329)
T ss_dssp             CCEEEC
T ss_pred             hhhhcc
Confidence            988753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=5.3e-18  Score=152.91  Aligned_cols=223  Identities=12%  Similarity=0.060  Sum_probs=148.2

Q ss_pred             CCCCCEEECcCCcCc--ccCCccCCCCCCCCEEEccCCccceeCCccccC--------CCCCCEEeCcCCcCcccCChhH
Q 046668           23 WLDLLVLNLGNNNFT--GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQN--------CTKLVMLDIGENEFVGNVPTWI   92 (381)
Q Consensus        23 l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~   92 (381)
                      +++|++|||++|.+.  ...+..+.   .++.+.+..|   .+.+.+|.+        |++|+.++|.+ .+. .++...
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred             hccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence            566777777777665  22222221   1233333333   234456666        88888888877 665 677766


Q ss_pred             HhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcC----CCCcCcccccccccc--------------------
Q 046668           93 GIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHL----SGSIPKCISNISSMV--------------------  148 (381)
Q Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~--------------------  148 (381)
                      +.+|++|+.+++.+|.+....+..|..+.++..+....+..    ......+|..+..|+                    
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~  199 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL  199 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence            66778888888888877766667777777666666655221    111223333333332                    


Q ss_pred             ------cccccCCccccCCCCCCCccccceEEEEeccccchh-hhcccccEEEccCCcccccCchhhhccccCcEEeCCC
Q 046668          149 ------TANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN-TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSC  221 (381)
Q Consensus       149 ------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~  221 (381)
                            .+.+...-..                    .....+ ..+++|+.+++++|+++.+.+..|.++.+|+++++++
T Consensus       200 ~~~~~~~l~~~~~l~~--------------------~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          200 QPRDINFLTIEGKLDN--------------------ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             CGGGCSEEEEEECCCH--------------------HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred             CccccceEEEeeeecH--------------------HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence                  2222211000                    001111 2267899999999999988888899999999999999


Q ss_pred             cccccccChhhhccCCCC-EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceec
Q 046668          222 NSFTGRIPNSIGALESIL-SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGK  275 (381)
Q Consensus       222 n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  275 (381)
                      | +....+.+|.++++|+ .+++.+ .++.+.+.+|..+++|+.+++++|.+...
T Consensus       260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence            8 7767788999999999 999998 77767788999999999999999988743

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=8.6e-17  Score=133.21  Aligned_cols=127  Identities=25%  Similarity=0.320  Sum_probs=105.0

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +++++++++++ .+|..+.  ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+.+|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            46888888888 5666543  68999999999998 66788888999999999999998888888999999999999999


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  134 (381)
                      ++. .++...+..+++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus        89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            988 454444447889999999999998666667888999999999999876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=1.6e-16  Score=129.88  Aligned_cols=133  Identities=23%  Similarity=0.250  Sum_probs=114.0

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      .+.+++++++++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            367899999988 456443  37999999999999987778889999999999999999977778889999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP  138 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  138 (381)
                      |++. .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus        86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9998 5565544479999999999999997766678889999999999999886544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=8.4e-17  Score=130.31  Aligned_cols=138  Identities=21%  Similarity=0.230  Sum_probs=119.4

Q ss_pred             CCCCCCEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCc
Q 046668           22 NWLDLLVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM  100 (381)
Q Consensus        22 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  100 (381)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+.+|..+. .+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCC
Confidence            3578999999999998 67888889999999999999999865  7899999999999999999866776654 699999


Q ss_pred             EEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcC---cccccccccccccccCCccccCCC
Q 046668          101 ILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIP---KCISNISSMVTANFSIGTDVQYPS  162 (381)
Q Consensus       101 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~l~~~~~~~~~~~~  162 (381)
                      +|++++|.+++... ..+..+++|++|++++|.+++..+   ..+..+++|+.+++..+...+.+.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999999996432 788999999999999999985544   488999999999999887766554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=8.6e-17  Score=127.53  Aligned_cols=127  Identities=22%  Similarity=0.259  Sum_probs=111.9

Q ss_pred             CccEEEcCCCccc-ccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGENHFS-GEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      +|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+.++++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            4789999999998 78888899999999999999999866  78899999999999999999778888889999999999


Q ss_pred             cCCcCccc-CChhHHhcCCCCcEEEcccccccccCC---cCccCCCCCCEEeccC
Q 046668           80 GENEFVGN-VPTWIGIRFSSLMILNLRSNKFRGVLP---NQLCGLTSLHVLDLAD  130 (381)
Q Consensus        80 ~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~  130 (381)
                      ++|++.+. .+..+. .+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        96 s~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999842 224454 89999999999999996655   4788999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=5.3e-16  Score=126.72  Aligned_cols=89  Identities=20%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             ccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCC
Q 046668          190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN  269 (381)
Q Consensus       190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  269 (381)
                      |+.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            45555555555544555567777788888888887766666677778888888888888765555567788888888888


Q ss_pred             CcceecCCC
Q 046668          270 NNLSGKIPL  278 (381)
Q Consensus       270 N~l~~~~~~  278 (381)
                      |++.|.+|.
T Consensus       134 N~~~~~~~~  142 (177)
T 2o6r_A          134 NPWDCSCPR  142 (177)
T ss_dssp             SCBCCCHHH
T ss_pred             CCeeccCcc
Confidence            888887763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=3.3e-16  Score=127.81  Aligned_cols=124  Identities=17%  Similarity=0.146  Sum_probs=56.1

Q ss_pred             ccEEEcCCCcccccCCccccCC-CCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            2 IRILKLGENHFSGEIPDCWMNW-LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      |++|++++|+++. ++. +..+ ++|++|++++|.+++.  ..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus        21 L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           21 DRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             CEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             ceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            4445555555442 222 2222 2555555555555433  344445555555555555543333333455555555555


Q ss_pred             CCcCcccCCh--hHHhcCCCCcEEEcccccccccCCc----CccCCCCCCEEeccCCc
Q 046668           81 ENEFVGNVPT--WIGIRFSSLMILNLRSNKFRGVLPN----QLCGLTSLHVLDLADNH  132 (381)
Q Consensus        81 ~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~  132 (381)
                      +|++. .+|.  .+. .+++|++|++++|.+. ..|.    .+..+++|+.|++++|.
T Consensus        97 ~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           97 NNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             SCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            55543 3333  222 4445555555555544 2222    24444555555555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.66  E-value=1.2e-17  Score=162.65  Aligned_cols=59  Identities=20%  Similarity=0.170  Sum_probs=28.5

Q ss_pred             cccCcEEeCCCcccccccChhhh-ccCCCCEEecc--C----CcCccc-----CchhhhCCCCCCeeeCCC
Q 046668          211 LRALVSLDLSCNSFTGRIPNSIG-ALESILSIDFS--A----NQLYGE-----IPQSISSLTFLSRLKLSN  269 (381)
Q Consensus       211 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~l~~  269 (381)
                      +++|++|+++.|.+++.....+. .+++|++|+++  +    +.++..     ++..+..+++|+.|++++
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence            55555555555555543333332 35566666666  2    333311     112244555666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=4e-15  Score=137.10  Aligned_cols=240  Identities=11%  Similarity=0.110  Sum_probs=184.9

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ++.+.+..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+++.+.. .++.+.+.+|.+|.+|+.+++.+
T Consensus       115 l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~  189 (401)
T 4fdw_A          115 YNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK  189 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred             ccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence            445555543 555667788886 7999999876 776888889884 799999986 67768889999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |++. .++...+ .+.+|+.+.+.++ ++.....+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+... ...++
T Consensus       190 n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~  263 (401)
T 4fdw_A          190 TKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIA  263 (401)
T ss_dssp             SCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEEC
T ss_pred             Ccce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEC
Confidence            9997 7888887 4789999999855 77677789999999999999875 44455567776 67777776432 11111


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCccc-----ccCchhhhccccCcEEeCCCcccccccChhhhccC
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS-----GEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALE  236 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  236 (381)
                      .                   ..+..+++|+.+++.+|.+.     ...+..|.++++|+.+++.+ .++.....+|.+++
T Consensus       264 ~-------------------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~  323 (401)
T 4fdw_A          264 S-------------------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR  323 (401)
T ss_dssp             T-------------------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC
T ss_pred             h-------------------hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC
Confidence            1                   12234677999999887664     45667899999999999994 47767778899999


Q ss_pred             CCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668          237 SILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       237 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                      +|+.+.+..| ++..-..+|..+ +|+.+++.+|....
T Consensus       324 ~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            9999999665 665667788888 89999999987653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.3e-14  Score=133.70  Aligned_cols=240  Identities=10%  Similarity=0.057  Sum_probs=180.4

Q ss_pred             cCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCc
Q 046668           21 MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM  100 (381)
Q Consensus        21 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  100 (381)
                      ..+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+++.+ .+. .++...+.+|.+|+
T Consensus       110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK  183 (401)
T ss_dssp             EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred             EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence            3457889999965 4666788899885 7999999877 776888899985 799999986 565 67777777899999


Q ss_pred             EEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccc
Q 046668          101 ILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA  180 (381)
Q Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (381)
                      .+++.+|.++......|. ..+|+.+.+..+ +......+|.++.+|+.+.+..+- ..++.                ..
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-~~I~~----------------~a  244 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-STIGQ----------------EA  244 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTC-CEECT----------------TT
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCc-cCccc----------------cc
Confidence            999999999976667777 589999999855 665667889999999998876431 11111                11


Q ss_pred             cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccc-----cccChhhhccCCCCEEeccCCcCcccCchh
Q 046668          181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT-----GRIPNSIGALESILSIDFSANQLYGEIPQS  255 (381)
Q Consensus       181 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  255 (381)
                      +   .. ..|+.+.+ .+.++.+...+|.++++|+.+++.+|.+.     ...+.+|.++++|+.+++. +.++..-..+
T Consensus       245 F---~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~a  318 (401)
T 4fdw_A          245 F---RE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGL  318 (401)
T ss_dssp             T---TT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTT
T ss_pred             c---cc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhh
Confidence            1   11 46888888 45566567788999999999999888765     4566789999999999999 4577666788


Q ss_pred             hhCCCCCCeeeCCCCcceecCCCC--CCCCccCCCcccCCC
Q 046668          256 ISSLTFLSRLKLSNNNLSGKIPLS--TQLQSFDPSSFTGNR  294 (381)
Q Consensus       256 l~~l~~L~~L~l~~N~l~~~~~~~--~~l~~l~~~~~~~n~  294 (381)
                      |..+++|+.+++..| +. .++..  ... .|+.+.+.+|.
T Consensus       319 F~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          319 LGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred             hcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence            999999999999765 33 22221  223 56666677663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=2.8e-15  Score=122.24  Aligned_cols=133  Identities=18%  Similarity=0.201  Sum_probs=111.9

Q ss_pred             ccccCCCCCCEEECcCCcCcccCCccCCCCC-CCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcC
Q 046668           18 DCWMNWLDLLVLNLGNNNFTGNIPISLGMLS-SLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRF   96 (381)
Q Consensus        18 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l   96 (381)
                      ..+.++.+|++|++++|.++. ++. +..+. +|++|++++|.+++.  ..|.++++|++|++++|.+. .+|..++..+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l   87 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL   87 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence            346788999999999999984 454 44454 999999999999965  68999999999999999998 5676665589


Q ss_pred             CCCcEEEcccccccccCCc--CccCCCCCCEEeccCCcCCCCcCcc----cccccccccccccCCcc
Q 046668           97 SSLMILNLRSNKFRGVLPN--QLCGLTSLHVLDLADNHLSGSIPKC----ISNISSMVTANFSIGTD  157 (381)
Q Consensus        97 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~l~~~~~~~  157 (381)
                      ++|++|++++|.++ .+|.  .+..+++|++|++++|.+. ..|..    +..+++|+.++++.+..
T Consensus        88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999999999997 4454  7889999999999999998 55664    88999999998876653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=7.2e-15  Score=119.02  Aligned_cols=92  Identities=21%  Similarity=0.191  Sum_probs=84.2

Q ss_pred             ccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeC
Q 046668          188 KLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKL  267 (381)
Q Consensus       188 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  267 (381)
                      +.++.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            44899999999999888999999999999999999999777777899999999999999999777778999999999999


Q ss_pred             CCCcceecCCCC
Q 046668          268 SNNNLSGKIPLS  279 (381)
Q Consensus       268 ~~N~l~~~~~~~  279 (381)
                      ++|++.|.++..
T Consensus       110 ~~N~~~c~c~~l  121 (170)
T 3g39_A          110 LNNPWDCACSDI  121 (170)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCCCCCchhH
Confidence            999999988743

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.57  E-value=9.8e-17  Score=133.60  Aligned_cols=153  Identities=20%  Similarity=0.307  Sum_probs=86.8

Q ss_pred             CCCCCCEEeCcCCcCcccCCh------hHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccc
Q 046668           70 NCTKLVMLDIGENEFVGNVPT------WIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISN  143 (381)
Q Consensus        70 ~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  143 (381)
                      ....++.++++.+.+.+.+|.      .+. .+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~   91 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV   91 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence            334444444444444444433      443 55666666666666654 34 5555666666666666655 33332221


Q ss_pred             ccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcc
Q 046668          144 ISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS  223 (381)
Q Consensus       144 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~  223 (381)
                                                                 +++|+.|++++|++++ +| .+..+++|++|++++|.
T Consensus        92 -------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           92 -------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             -------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred             -------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence                                                       3446666666666654 23 46667777777777777


Q ss_pred             cccccC-hhhhccCCCCEEeccCCcCcccCch----------hhhCCCCCCeeeCCCCcce
Q 046668          224 FTGRIP-NSIGALESILSIDFSANQLYGEIPQ----------SISSLTFLSRLKLSNNNLS  273 (381)
Q Consensus       224 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~l~~N~l~  273 (381)
                      +++..+ ..+..+++|++|++++|.+++..|.          .+..+++|+.||  +|+++
T Consensus       127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            763222 3566677777777777777654443          256777777776  55543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.57  E-value=9.9e-18  Score=139.67  Aligned_cols=144  Identities=22%  Similarity=0.254  Sum_probs=120.0

Q ss_pred             ccEEEcCCCcccccCCc------cccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCC
Q 046668            2 IRILKLGENHFSGEIPD------CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLV   75 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   75 (381)
                      ++.++++.+.+.+..|.      .|.++++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~   96 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence            45566777777777666      89999999999999999986 56 8889999999999999998 6788888889999


Q ss_pred             EEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCc----------ccccc
Q 046668           76 MLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPK----------CISNI  144 (381)
Q Consensus        76 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l  144 (381)
                      +|++++|++. .+| .+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.          .+..+
T Consensus        97 ~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A           97 ELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             EEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             EEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence            9999999998 466 444 78999999999999985432 4688999999999999999765544          26778


Q ss_pred             ccccccc
Q 046668          145 SSMVTAN  151 (381)
Q Consensus       145 ~~L~~l~  151 (381)
                      ++|+.++
T Consensus       174 ~~L~~Ld  180 (198)
T 1ds9_A          174 PNLKKLD  180 (198)
T ss_dssp             SSCSEEC
T ss_pred             CCcEEEC
Confidence            8888775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=1.9e-14  Score=116.52  Aligned_cols=107  Identities=21%  Similarity=0.322  Sum_probs=81.0

Q ss_pred             CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668           25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL  104 (381)
Q Consensus        25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  104 (381)
                      ..+++++++|.++ .+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++. .+|...+..+++|++|+|
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence            3567788888877 4555543  67888888888888777777888888888888888887 566555447788888888


Q ss_pred             ccccccccCCcCccCCCCCCEEeccCCcCCC
Q 046668          105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLSG  135 (381)
Q Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  135 (381)
                      ++|.+++..+..|..+++|++|++++|.+..
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            8888886666678888888888888888764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=3.2e-14  Score=115.57  Aligned_cols=105  Identities=22%  Similarity=0.322  Sum_probs=87.0

Q ss_pred             CCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcc
Q 046668           26 LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLR  105 (381)
Q Consensus        26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  105 (381)
                      -+.+++++|.++ .+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++. .+|...+..+++|++|+|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence            478888888887 5666654  78889999999988877888889999999999999887 5676655578899999999


Q ss_pred             cccccccCCcCccCCCCCCEEeccCCcCC
Q 046668          106 SNKFRGVLPNQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus       106 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  134 (381)
                      +|.+++..+..|..+++|++|++++|.+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99998666666888999999999999887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=5.4e-14  Score=114.21  Aligned_cols=105  Identities=24%  Similarity=0.274  Sum_probs=92.6

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +.+++++|+++ .+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57899999997 6777654  89999999999999888999999999999999999999777777899999999999999


Q ss_pred             cCcccCChhHHhcCCCCcEEEcccccccc
Q 046668           83 EFVGNVPTWIGIRFSSLMILNLRSNKFRG  111 (381)
Q Consensus        83 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  111 (381)
                      ++. .+|...+..+++|++|+|++|.+..
T Consensus        92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence            998 6776645489999999999999884

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.46  E-value=4.1e-15  Score=135.74  Aligned_cols=84  Identities=14%  Similarity=0.170  Sum_probs=38.1

Q ss_pred             ccEEEccCCccccc----CchhhhccccCcEEeCCCccccccc----ChhhhccCCCCEEeccCCcCccc----Cchhhh
Q 046668          190 MRLIDLSKNKFSGE----IPSEIMNLRALVSLDLSCNSFTGRI----PNSIGALESILSIDFSANQLYGE----IPQSIS  257 (381)
Q Consensus       190 L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~  257 (381)
                      |+.|+|++|.++..    ++..+...++|++|+|++|.+.+..    +..+...++|++|+|++|.++..    +...+.
T Consensus       157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~  236 (372)
T 3un9_A          157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR  236 (372)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred             cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence            45555555544321    1222344455555555555554321    23334444555555555555421    222333


Q ss_pred             CCCCCCeeeCCCCcce
Q 046668          258 SLTFLSRLKLSNNNLS  273 (381)
Q Consensus       258 ~l~~L~~L~l~~N~l~  273 (381)
                      ..++|++|++++|+++
T Consensus       237 ~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          237 EHPSLELLHLYFNELS  252 (372)
T ss_dssp             HCSSCCEEECTTSSCC
T ss_pred             hCCCCCEEeccCCCCC
Confidence            4455555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.39  E-value=1.2e-14  Score=132.62  Aligned_cols=188  Identities=15%  Similarity=0.074  Sum_probs=118.8

Q ss_pred             CCCCCEEECcCCcCcccCCccCC-----CCCCCCEEEccCCccceeCCccc-cCCCCCCEEeCcCCcCcccCChhHH---
Q 046668           23 WLDLLVLNLGNNNFTGNIPISLG-----MLSSLQSLNLRKNSLSGQIPASF-QNCTKLVMLDIGENEFVGNVPTWIG---   93 (381)
Q Consensus        23 l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~---   93 (381)
                      +++|+.|+|++|.++......+.     ..++|++|+|++|.+.......+ ..+++|++|+|++|.+.+.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46788888888888744333332     23688889998888764333333 3456788999999988643323322   


Q ss_pred             -hcCCCCcEEEccccccccc----CCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCcc
Q 046668           94 -IRFSSLMILNLRSNKFRGV----LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKY  168 (381)
Q Consensus        94 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  168 (381)
                       ...++|++|+|++|.++..    ++..+...++|++|+|++|.+.+.....+.                          
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~--------------------------  204 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA--------------------------  204 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH--------------------------
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH--------------------------
Confidence             2357799999999988642    334456778899999999987632111111                          


Q ss_pred             ccceEEEEeccccchhhhcccccEEEccCCcccccC----chhhhccccCcEEeCCCcccccccChhhhccC-----CCC
Q 046668          169 VEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI----PSEIMNLRALVSLDLSCNSFTGRIPNSIGALE-----SIL  239 (381)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~  239 (381)
                                   ..+...+.|+.|++++|.+++..    +..+...++|++|+|++|.+++.....+..+.     .|+
T Consensus       205 -------------~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~  271 (372)
T 3un9_A          205 -------------AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR  271 (372)
T ss_dssp             -------------HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CE
T ss_pred             -------------HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccch
Confidence                         11122456888899998887543    33455678899999999998865555554332     266


Q ss_pred             EEe--ccCCcCc
Q 046668          240 SID--FSANQLY  249 (381)
Q Consensus       240 ~L~--L~~n~l~  249 (381)
                      .+.  +..+.+.
T Consensus       272 ~l~~ll~~~~~~  283 (372)
T 3un9_A          272 VVVSLTEGTAVS  283 (372)
T ss_dssp             EECCCC----CH
T ss_pred             hhHhhhcCCccC
Confidence            666  6666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=1.1e-12  Score=118.82  Aligned_cols=103  Identities=19%  Similarity=0.163  Sum_probs=75.7

Q ss_pred             EEEcCCC-cccccCCccccCCCCCCEEECcC-CcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            4 ILKLGEN-HFSGEIPDCWMNWLDLLVLNLGN-NNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         4 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      .++.+++ +++ .+|. +..+++|++|+|++ |.++++.+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3566776 677 4666 77777888888875 778777777788888888888888888877777788888888888888


Q ss_pred             CcCcccCChhHHhcCCCCcEEEccccccc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFR  110 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  110 (381)
                      |++. .+|...+..++ |+.|+|.+|.+.
T Consensus        90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             Cccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            8876 56655553333 777777777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.34  E-value=3.3e-11  Score=111.07  Aligned_cols=137  Identities=12%  Similarity=0.073  Sum_probs=83.7

Q ss_pred             ccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcC-------
Q 046668           12 FSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF-------   84 (381)
Q Consensus        12 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------   84 (381)
                      ++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+-.       
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            44455667777777887777643 66566677777777887777654 4445566677777666665543210       


Q ss_pred             -------------cccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCccccccccccccc
Q 046668           85 -------------VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTAN  151 (381)
Q Consensus        85 -------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~  151 (381)
                                   ...+....+.++.+|+.+.+.++. .......|.++++|+.+++..+ +......+|.++..|+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             ecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence                         012333445567788888886553 3355567777778887777665 3323345566665555554


Q ss_pred             c
Q 046668          152 F  152 (381)
Q Consensus       152 ~  152 (381)
                      +
T Consensus       215 ~  215 (394)
T 4fs7_A          215 F  215 (394)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=8.5e-12  Score=113.04  Aligned_cols=105  Identities=20%  Similarity=0.138  Sum_probs=90.8

Q ss_pred             CEEECcCC-cCcccCCccCCCCCCCCEEEccC-CccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668           27 LVLNLGNN-NFTGNIPISLGMLSSLQSLNLRK-NSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL  104 (381)
Q Consensus        27 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  104 (381)
                      ..++++++ .++ .+|. |..+++|++|+|++ |.+++..+..|.++++|++|+|++|++.+..|..+. .+++|++|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc-CCcCCCEEeC
Confidence            45689888 898 5777 99999999999996 999988889999999999999999999865554444 8999999999


Q ss_pred             ccccccccCCcCccCCCCCCEEeccCCcCCC
Q 046668          105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLSG  135 (381)
Q Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  135 (381)
                      ++|.+++..+..|..++ |+.|++.+|.+..
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            99999976666777666 9999999999873

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.24  E-value=2.7e-10  Score=104.92  Aligned_cols=125  Identities=11%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc---------------------c
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS---------------------L   60 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---------------------l   60 (381)
                      |+.+.+..+ ++.+...+|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+-                     +
T Consensus        73 L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~  150 (394)
T 4fs7_A           73 VTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGV  150 (394)
T ss_dssp             EEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTC
T ss_pred             ceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccc
Confidence            455555432 44444555666666666666533 443444555555555554443221                     0


Q ss_pred             ceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCC
Q 046668           61 SGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADN  131 (381)
Q Consensus        61 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  131 (381)
                      ......+|.++.+|+.+++.++. . .++...+.++.+|+.+.+..+ ++......|.++..|+.+.+..+
T Consensus       151 ~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          151 TVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             CEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             cccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence            11223345555666666665442 2 344444445566666665544 33344455555566665555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.17  E-value=1.7e-09  Score=99.66  Aligned_cols=82  Identities=16%  Similarity=0.184  Sum_probs=42.9

Q ss_pred             cccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeee
Q 046668          187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK  266 (381)
Q Consensus       187 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  266 (381)
                      ...|+.+.+. +.+..+....|.++.+|++++|..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.++++|+.++
T Consensus       287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            3445555553 2233334445556666666666543 33344455666666666666433 4433345566666666666


Q ss_pred             CCCCc
Q 046668          267 LSNNN  271 (381)
Q Consensus       267 l~~N~  271 (381)
                      +.++.
T Consensus       364 ~~~~~  368 (394)
T 4gt6_A          364 YSGSR  368 (394)
T ss_dssp             ESSCH
T ss_pred             ECCce
Confidence            66553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.16  E-value=5.3e-11  Score=107.71  Aligned_cols=164  Identities=14%  Similarity=0.178  Sum_probs=91.7

Q ss_pred             ccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCc--cCCCCCCEEeccCC--cCCCCcCccc
Q 046668           66 ASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQL--CGLTSLHVLDLADN--HLSGSIPKCI  141 (381)
Q Consensus        66 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n--~l~~~~~~~~  141 (381)
                      ..+..+|+|+.|++++|.-. .++. +  .+++|++|++..+.+.......+  ..+|+|++|+|+.+  ...+.  ..+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~  239 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDM  239 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc--hhH
Confidence            44456677777777666311 2332 2  35677777777666543222222  25677777777532  11111  001


Q ss_pred             ccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhh---ccccCcEEe
Q 046668          142 SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIM---NLRALVSLD  218 (381)
Q Consensus       142 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~---~l~~L~~L~  218 (381)
                      ..+.   .+ +.                              ...+++|+.|++.+|.+.+..+..+.   .+++|++|+
T Consensus       240 ~~l~---~~-l~------------------------------~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld  285 (362)
T 2ra8_A          240 NVFR---PL-FS------------------------------KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD  285 (362)
T ss_dssp             GGTG---GG-SC------------------------------TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred             HHHH---HH-Hh------------------------------cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence            0100   00 00                              01256688888888877644333332   477888899


Q ss_pred             CCCccccccc----ChhhhccCCCCEEeccCCcCcccCchhhhC-CCCCCeeeCCCCc
Q 046668          219 LSCNSFTGRI----PNSIGALESILSIDFSANQLYGEIPQSISS-LTFLSRLKLSNNN  271 (381)
Q Consensus       219 Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~N~  271 (381)
                      |+.|.+.+..    +..+..+++|++|++++|.++...-..+.. +  ...+++++++
T Consensus       286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            9888887543    333456788999999988887543333433 2  3567888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.11  E-value=6.1e-11  Score=107.28  Aligned_cols=63  Identities=19%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             cccCcEEeCCCcccccccChhhh---ccCCCCEEeccCCcCccc----CchhhhCCCCCCeeeCCCCcce
Q 046668          211 LRALVSLDLSCNSFTGRIPNSIG---ALESILSIDFSANQLYGE----IPQSISSLTFLSRLKLSNNNLS  273 (381)
Q Consensus       211 l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~N~l~  273 (381)
                      +++|++|+|.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            45566666655555432222222   345566666665555432    1222234455666666555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.06  E-value=4.5e-09  Score=96.76  Aligned_cols=261  Identities=10%  Similarity=0.097  Sum_probs=148.0

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCc---CcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEe
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNN---FTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLD   78 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   78 (381)
                      |+.+.+..+ ++.+...+|.+|.+|+.+.+..+.   ++.+-..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            667777654 565777889999999999987653   66566677888888887777654 4445666777777777777


Q ss_pred             CcCCcCcccCChhHHhcCCCCcEEEcccccc---------------------cccCCcCccCCCCCCEEeccCCcC----
Q 046668           79 IGENEFVGNVPTWIGIRFSSLMILNLRSNKF---------------------RGVLPNQLCGLTSLHVLDLADNHL----  133 (381)
Q Consensus        79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l---------------------~~~~~~~~~~l~~L~~L~L~~n~l----  133 (381)
                      +..+ +. .++...+..+.+|+.+.+.++--                     .......|..+.++.......+..    
T Consensus       144 lp~~-~~-~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~  221 (394)
T 4gt6_A          144 IPEG-VT-SVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAID  221 (394)
T ss_dssp             CCTT-CC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSS
T ss_pred             ccce-ee-eecccceecccccccccccceeeEeccccccccceeEEEECCcccccccchhhhccccceeccccccccccc
Confidence            7543 22 34444444555555555543211                     111223344444444333221110    


Q ss_pred             --------------------------------CCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecc--
Q 046668          134 --------------------------------SGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK--  179 (381)
Q Consensus       134 --------------------------------~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  179 (381)
                                                      ......+|..+..|+.+.+...... ................+...  
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i~  300 (394)
T 4gt6_A          222 NVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRIT  300 (394)
T ss_dssp             SCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCC
T ss_pred             ceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccccccccccccCCCccc
Confidence                                            0011234566666666655432211 11111111111111111111  


Q ss_pred             --ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhh
Q 046668          180 --AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSIS  257 (381)
Q Consensus       180 --~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  257 (381)
                        ....+..+.+|+.+.+..+ ++.+...+|.++.+|+++.+..+ ++.....+|.++++|+.+++.++....   ..+.
T Consensus       301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~  375 (394)
T 4gt6_A          301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAIS  375 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCB
T ss_pred             ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhh
Confidence              1122445788999999764 55566778999999999999765 665667889999999999999886542   3556


Q ss_pred             CCCCCCeeeCCCCcc
Q 046668          258 SLTFLSRLKLSNNNL  272 (381)
Q Consensus       258 ~l~~L~~L~l~~N~l  272 (381)
                      ....|+.+.+..|.+
T Consensus       376 ~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          376 TDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCCCC----------
T ss_pred             ccCCCCEEEeCCCCE
Confidence            677888888776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.83  E-value=2.8e-07  Score=84.24  Aligned_cols=82  Identities=15%  Similarity=0.104  Sum_probs=52.0

Q ss_pred             cccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeee
Q 046668          187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK  266 (381)
Q Consensus       187 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  266 (381)
                      ...|+.+.+..+ ++.+....|..+..|+.+.+..+ +......+|.++++|+.+.+.++.++..-..+|..+.+|+.++
T Consensus       239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             CccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence            455666666554 44344556667777777777544 4434455667777777777777766655556677777777777


Q ss_pred             CCCC
Q 046668          267 LSNN  270 (381)
Q Consensus       267 l~~N  270 (381)
                      +..+
T Consensus       317 lp~~  320 (379)
T 4h09_A          317 LPTA  320 (379)
T ss_dssp             CCTT
T ss_pred             cCcc
Confidence            7543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.65  E-value=8.8e-09  Score=88.48  Aligned_cols=79  Identities=24%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             CCCCCCEEEccCCccce--eCCccccCCCCCCEEeCcCCcCcccCChhHHhcCC--CCcEEEcccccccccCC-------
Q 046668           46 MLSSLQSLNLRKNSLSG--QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFS--SLMILNLRSNKFRGVLP-------  114 (381)
Q Consensus        46 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-------  114 (381)
                      ++++|++|+|++|.+++  .+|..+..+++|+.|+|++|++.+.  ..+. .+.  +|++|+|++|.+.+..|       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-KIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-GGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-hcccCCcceEEccCCcCccccCcchhHHH
Confidence            34455555555555543  2234444555555555555555421  1111 222  55555555555554333       


Q ss_pred             cCccCCCCCCEEe
Q 046668          115 NQLCGLTSLHVLD  127 (381)
Q Consensus       115 ~~~~~l~~L~~L~  127 (381)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1244455555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.65  E-value=4.9e-09  Score=85.67  Aligned_cols=116  Identities=17%  Similarity=0.125  Sum_probs=80.1

Q ss_pred             ccccCCCCCCEEECcCC-cCccc----CCccCCCCCCCCEEEccCCcccee----CCccccCCCCCCEEeCcCCcCccc-
Q 046668           18 DCWMNWLDLLVLNLGNN-NFTGN----IPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLVMLDIGENEFVGN-   87 (381)
Q Consensus        18 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-   87 (381)
                      ..+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+.+. 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34566788999999888 77632    445566678888999988887632    344556667888899988888643 


Q ss_pred             ---CChhHHhcCCCCcEEEc--cccccccc----CCcCccCCCCCCEEeccCCcCC
Q 046668           88 ---VPTWIGIRFSSLMILNL--RSNKFRGV----LPNQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus        88 ---~~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  134 (381)
                         +...+. ..++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus       110 ~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               222222 4567888888  77887643    2344555678888888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.64  E-value=7.8e-09  Score=84.45  Aligned_cols=109  Identities=16%  Similarity=0.199  Sum_probs=84.4

Q ss_pred             CccEEEcCCC-ccccc----CCccccCCCCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCcccee----CCcc
Q 046668            1 GIRILKLGEN-HFSGE----IPDCWMNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSLSGQ----IPAS   67 (381)
Q Consensus         1 ~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~   67 (381)
                      +|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+...    +..+
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            4789999999 87642    345566789999999999999743    344555678999999999998743    4567


Q ss_pred             ccCCCCCCEEeC--cCCcCcccC----ChhHHhcCCCCcEEEccccccc
Q 046668           68 FQNCTKLVMLDI--GENEFVGNV----PTWIGIRFSSLMILNLRSNKFR  110 (381)
Q Consensus        68 ~~~l~~L~~L~L--~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~  110 (381)
                      +...+.|++|+|  ++|.+....    ...+. ..++|++|+|++|.+.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence            788899999999  889886432    22232 4689999999999886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=2.6e-07  Score=79.30  Aligned_cols=67  Identities=24%  Similarity=0.357  Sum_probs=35.5

Q ss_pred             hccccCcEEeCCCccccc--ccChhhhccCCCCEEeccCCcCcccCchhhhCCC--CCCeeeCCCCcceecCC
Q 046668          209 MNLRALVSLDLSCNSFTG--RIPNSIGALESILSIDFSANQLYGEIPQSISSLT--FLSRLKLSNNNLSGKIP  277 (381)
Q Consensus       209 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~  277 (381)
                      ..+++|++|+|++|.+++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|++|++++|++.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            345566666666666654  2334445556666666666666533  1122222  56666666666655443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.43  E-value=1.4e-05  Score=72.87  Aligned_cols=240  Identities=8%  Similarity=-0.042  Sum_probs=149.8

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      |+.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|.+. +++.+.+..+ ++.+...+|.++.+++...+..
T Consensus        93 l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A           93 LQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             CCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT
T ss_pred             CceEECCce-eeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhccccccccccccc
Confidence            444555433 443455667664 7999999765 443556677654 6777776654 4557778888999999888766


Q ss_pred             CcCcccCChh-----------HHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccc
Q 046668           82 NEFVGNVPTW-----------IGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTA  150 (381)
Q Consensus        82 n~l~~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l  150 (381)
                      +.........           .+.....+..+.+.... .......+....+|+.+.+..+ +......++..+..|+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i  245 (379)
T 4h09_A          168 NNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEI  245 (379)
T ss_dssp             TCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEE
T ss_pred             ccceeecccceecccccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEE
Confidence            5432110000           01123445555544332 2244456667777888877654 332445667777777766


Q ss_pred             cccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccCh
Q 046668          151 NFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPN  230 (381)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  230 (381)
                      .+...- ..+..                   ..+.....|+.+.+..+ +.......|.++.+|+.+.+.++.++.....
T Consensus       246 ~lp~~v-~~I~~-------------------~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~  304 (379)
T 4h09_A          246 AIPKNV-TSIGS-------------------FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR  304 (379)
T ss_dssp             EECTTC-CEECT-------------------TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred             EcCCCc-cEeCc-------------------cccceeehhcccccccc-ceeccccccccccccccccccccccceehhh
Confidence            654321 11100                   11122455777777543 4445566788999999999998888866778


Q ss_pred             hhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCC
Q 046668          231 SIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNN  270 (381)
Q Consensus       231 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N  270 (381)
                      +|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+.+..+
T Consensus       305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            8999999999999755 65455678888899998877543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=8e-08  Score=76.66  Aligned_cols=92  Identities=10%  Similarity=0.061  Sum_probs=64.7

Q ss_pred             CCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCc-cceeCCccccCC----CCCCEEeCcCCc-CcccCC
Q 046668           16 IPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNS-LSGQIPASFQNC----TKLVMLDIGENE-FVGNVP   89 (381)
Q Consensus        16 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~   89 (381)
                      +|.....-..|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+    ++|++|+|++|. +++.--
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34433334578999999998876655667889999999999985 554433445554    479999999985 553333


Q ss_pred             hhHHhcCCCCcEEEccccc
Q 046668           90 TWIGIRFSSLMILNLRSNK  108 (381)
Q Consensus        90 ~~~~~~l~~L~~L~L~~n~  108 (381)
                      ..+. .+++|++|+++++.
T Consensus       133 ~~L~-~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IALH-HFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHGG-GCTTCCEEEEESCT
T ss_pred             HHHh-cCCCCCEEECCCCC
Confidence            3444 68899999998875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=4.5e-07  Score=72.31  Aligned_cols=84  Identities=13%  Similarity=0.086  Sum_probs=68.4

Q ss_pred             ccccEEEccCCcccccCchhhhccccCcEEeCCCcc-cccccChhhhcc----CCCCEEeccCCc-CcccCchhhhCCCC
Q 046668          188 KLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNS-FTGRIPNSIGAL----ESILSIDFSANQ-LYGEIPQSISSLTF  261 (381)
Q Consensus       188 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~  261 (381)
                      ..|+.|+++++.++...-..+.++++|++|+|++|. +++..-..++.+    ++|++|++++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            359999999999887766778899999999999995 776555556654    479999999985 77554556778999


Q ss_pred             CCeeeCCCCc
Q 046668          262 LSRLKLSNNN  271 (381)
Q Consensus       262 L~~L~l~~N~  271 (381)
                      |++|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.84  E-value=2.6e-05  Score=59.19  Aligned_cols=63  Identities=17%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             cEEeCCCcccc-cccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC
Q 046668          215 VSLDLSCNSFT-GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS  279 (381)
Q Consensus       215 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  279 (381)
                      ..++.+++.++ ..+|..+  .++|++|+|++|+|+...+..|..+++|+.|+|++|+|.|+|...
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~   74 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV   74 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence            36777777775 2455433  257899999999999777778889999999999999999988754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.36  E-value=0.00042  Score=52.41  Aligned_cols=57  Identities=19%  Similarity=0.346  Sum_probs=42.2

Q ss_pred             CEEECcCCcCc-ccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCc
Q 046668           27 LVLNLGNNNFT-GNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV   85 (381)
Q Consensus        27 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   85 (381)
                      ..++.+++.++ ..+|..+.  .+|++|+|++|.|+.+.+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777775 34555443  46888888888888777777888888888888888763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.29  E-value=0.0001  Score=59.79  Aligned_cols=115  Identities=10%  Similarity=0.095  Sum_probs=79.2

Q ss_pred             ccCCCCCCEEECcCC-cCcc----cCCccCCCCCCCCEEEccCCcccee----CCccccCCCCCCEEeCcCCcCcccCCh
Q 046668           20 WMNWLDLLVLNLGNN-NFTG----NIPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLVMLDIGENEFVGNVPT   90 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~   90 (381)
                      +.+-+.|++|+|++| .|..    .+.+++..-+.|++|+|++|.+...    +.+++..-+.|++|+|++|.+.+.-..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455678999999985 7753    2445666678999999999998743    334455678899999999998743333


Q ss_pred             hHHh---cCCCCcEEEccccc---ccc----cCCcCccCCCCCCEEeccCCcCC
Q 046668           91 WIGI---RFSSLMILNLRSNK---FRG----VLPNQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus        91 ~~~~---~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~L~~n~l~  134 (381)
                      .+..   .-..|++|+|+++.   +..    .+...+..-+.|+.|+++.|.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            3322   23569999998653   332    12344555678999999877653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.27  E-value=8.4e-05  Score=60.31  Aligned_cols=114  Identities=15%  Similarity=0.143  Sum_probs=75.1

Q ss_pred             CccCCCCCCCCEEEccCC-ccce----eCCccccCCCCCCEEeCcCCcCccc----CChhHHhcCCCCcEEEcccccccc
Q 046668           41 PISLGMLSSLQSLNLRKN-SLSG----QIPASFQNCTKLVMLDIGENEFVGN----VPTWIGIRFSSLMILNLRSNKFRG  111 (381)
Q Consensus        41 ~~~~~~l~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~  111 (381)
                      ...+.+-+.|++|+|++| .+..    .+.+++..-..|+.|+|++|++.+.    +...+. .-..|++|+|++|.|..
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCH
Confidence            334456678999999985 6642    2345667778899999999988632    222232 45789999999999874


Q ss_pred             c----CCcCccCCCCCCEEeccCCc---CCC----CcCcccccccccccccccCC
Q 046668          112 V----LPNQLCGLTSLHVLDLADNH---LSG----SIPKCISNISSMVTANFSIG  155 (381)
Q Consensus       112 ~----~~~~~~~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~l~~~~~  155 (381)
                      .    +...+..-+.|++|+|++|.   +..    .+..++..-+.|..++++.+
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            2    23445555679999998653   332    12334555567777776544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=87.14  E-value=1.7  Score=30.57  Aligned_cols=47  Identities=11%  Similarity=-0.038  Sum_probs=25.4

Q ss_pred             cccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCC
Q 046668           11 HFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKN   58 (381)
Q Consensus        11 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   58 (381)
                      .++.+...+|.+|.+|+.+.|-.+ ++.+-..+|.++.+|+.+.+.+.
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            344444555666666666666543 33345555666666666655543

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=85.92  E-value=0.28  Score=28.51  Aligned_cols=19  Identities=11%  Similarity=0.181  Sum_probs=7.7

Q ss_pred             hhHHHHHHHHhhhhhccch
Q 046668          340 GFVVGFWFVMGPLFVSRKW  358 (381)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~  358 (381)
                      |+++.+++++++++++|+.
T Consensus        20 Gv~~~~ii~~~~~~~~RRr   38 (44)
T 2ks1_B           20 ALLLLLVVALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            3444333333434444443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.64  E-value=1.2  Score=31.45  Aligned_cols=49  Identities=14%  Similarity=0.180  Sum_probs=36.0

Q ss_pred             CCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668           33 NNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus        33 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      +..++.+...+|.++.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34566677778888888888888765 44466778888888888887654

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=84.43  E-value=0.24  Score=28.74  Aligned_cols=18  Identities=6%  Similarity=-0.099  Sum_probs=7.3

Q ss_pred             hHHHHHHHHhhhhhccch
Q 046668          341 FVVGFWFVMGPLFVSRKW  358 (381)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~  358 (381)
                      +++.++++++.++++|+.
T Consensus        20 v~~v~ii~~~~~~~~RRR   37 (44)
T 2l2t_A           20 LFILVIVGLTFAVYVRRK   37 (44)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            333333333434444443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=84.23  E-value=0.31  Score=28.26  Aligned_cols=25  Identities=8%  Similarity=0.060  Sum_probs=10.1

Q ss_pred             eeehhhhhHHHHHHHHhhhhhccch
Q 046668          334 YVSLALGFVVGFWFVMGPLFVSRKW  358 (381)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~  358 (381)
                      ..+.++|+++.+++.+++++|.||.
T Consensus        14 Ia~~vVGvll~vi~~l~~~~~~RRR   38 (44)
T 2jwa_A           14 IISAVVGILLVVVLGVVFGILIKRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhheehh
Confidence            3444455333333333334444433

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=82.26  E-value=0.58  Score=26.26  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=10.7

Q ss_pred             eeehhhhhHHHHHHHHhhhhh
Q 046668          334 YVSLALGFVVGFWFVMGPLFV  354 (381)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~  354 (381)
                      ..+++++.++++++++++.++
T Consensus        13 IAGiVvG~v~gv~li~~l~~~   33 (38)
T 2k1k_A           13 IVAVIFGLLLGAALLLGILVF   33 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeehHHHHHHHHHHHHHHH
Confidence            445556666555544444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 3e-16
 Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 14/204 (6%)

Query: 68  FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLD 127
               T L  L    N+     P  I    ++L  L+L  N+ +      L  LT+L  LD
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 128 LADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVL-KGKAVEYNTI 186
           LA+N +S   P  +S ++ +               ++    + +  L   + + +   + 
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 187 LKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSAN 246
           LK +  + L  N  S   P  + +L  L  L  + N  +    +S+  L +I  +    N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 247 QLYGEIPQSISSLTFLSRLKLSNN 270
           Q+    P  +++LT +++L L++ 
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 6e-11
 Identities = 44/237 (18%), Positives = 69/237 (29%), Gaps = 74/237 (31%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
           L    N  S   P   +  LD   L+L  N        +L  L++L  L+L  N +S   
Sbjct: 202 LIATNNQISDITPLGILTNLD--ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 65  PASFQNCTKLVMLDIGENEFVGNVP-------------------TWIGIRFSSLMILNLR 105
           P      TKL  L +G N+     P                           +L  L L 
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 106 SNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST 165
            N    + P  +  LT L  L  A+N +S      ++N+++                   
Sbjct: 316 FNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN------------------- 352

Query: 166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCN 222
                                   +  +    N+ S   P  + NL  +  L L+  
Sbjct: 353 ------------------------INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 29/150 (19%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPIS------------------ 43
           +  L L  N  S   P        L  L LG N  +   P++                  
Sbjct: 243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 44  --LGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI 101
             +  L +L  L L  N++S   P    + TKL  L    N+      + +    +++  
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA-NLTNINW 355

Query: 102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADN 131
           L+   N+   + P  L  LT +  L L D 
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 8e-08
 Identities = 47/275 (17%), Positives = 92/275 (33%), Gaps = 19/275 (6%)

Query: 4   ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ 63
              LG+ + +  +    ++   +  L         +I   +  L++L  +N   N L+  
Sbjct: 26  KTVLGKTNVTDTVSQTDLD--QVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI 81

Query: 64  IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL 123
            P   +N TKLV + +  N+     P       + L + N +      +          L
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 124 HVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEY 183
               ++D      +             +     ++                  K   +  
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS-------NKVSDISV 192

Query: 184 NTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDF 243
              L  +  +  + N+ S   P  I+    L  L L+ N        ++ +L ++  +D 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 244 SANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL 278
           + NQ+    P  +S LT L+ LKL  N +S   PL
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPL 281

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 210 NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN 269
            L   +   L   + T  +  +   L+ + ++      +  +    +  L  L+++  SN
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 75

Query: 270 NNLSGKIPLS--TQLQSFDPSSFTGNRLCGSPLPNNCF 305
           N L+   PL   T+L     ++     +       N  
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 113

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 3e-16
 Identities = 47/289 (16%), Positives = 97/289 (33%), Gaps = 13/289 (4%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
            L V+   +      +P  L        L+L+ N ++      F+N   L  L +  N+ 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
               P         L  L L  N+ + +       L  L V +     +  S+   ++ +
Sbjct: 68  SKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 145 SSMVTANFSIGTDVQYPSVSTG-KYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE 203
             +      + +         G K +    +           +   +  + L  NK +  
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186

Query: 204 IPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLS 263
             + +  L  L  L LS NS +     S+     +  +  + N+L  ++P  ++   ++ 
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 245

Query: 264 RLKLSNNNLSG-------KIPLSTQLQSFDPSSFTGNRLCGSPLPNNCF 305
            + L NNN+S            +T+  S+   S   N +    +  + F
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 4e-16
 Identities = 64/281 (22%), Positives = 96/281 (34%), Gaps = 33/281 (11%)

Query: 29  LNLGNNNFTGNIPI--SLGMLSSLQSLNLRKN-SLSGQIPASFQNCTKLVMLDIGENEFV 85
           L+L   N     PI  SL  L  L  L +    +L G IP +    T+L  L I      
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIP----KCI 141
                    +  +L+ L+   N   G LP  +  L +L  +    N +SG+IP       
Sbjct: 115 -GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 142 SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFS 201
              +SM  +   +   +     +      D    +                         
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 202 GEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTF 261
                ++   + L  LDL  N   G +P  +  L+ + S++ S N L GEIPQ       
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------- 286

Query: 262 LSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNR-LCGSPLP 301
                               LQ FD S++  N+ LCGSPLP
Sbjct: 287 -----------------GGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 19  CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLD 78
                 +L  L+L NN   G +P  L  L  L SLN+  N+L G+IP    N  +  +  
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

Query: 79  IGENEFVGNVP 89
              N+ +   P
Sbjct: 298 YANNKCLCGSP 308

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 4e-11
 Identities = 44/271 (16%), Positives = 89/271 (32%), Gaps = 23/271 (8%)

Query: 25  DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEF 84
               + L  N  +     S     +L  L L  N L+    A+F     L  LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 85  VGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNI 144
           + +V          L  L+L     + + P    GL +L  L L DN L         ++
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 145 SSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEI 204
            ++             P  +                      L  +  + L +N+ +   
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRG-------------------LHSLDRLLLHQNRVAHVH 193

Query: 205 PSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSR 264
           P    +L  L++L L  N+ +     ++  L ++  +  + N    +   +     +L +
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQK 252

Query: 265 LKLSNNNLSGKIPLS---TQLQSFDPSSFTG 292
            + S++ +   +P       L+    +   G
Sbjct: 253 FRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 8e-11
 Identities = 46/274 (16%), Positives = 84/274 (30%), Gaps = 23/274 (8%)

Query: 27  LVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG 86
           +  +         +P+ +   ++ Q + L  N +S    ASF+ C  L +L +  N    
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 87  NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISS 146
                         +    + + R V P    GL  LH L L                  
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL----------------DR 114

Query: 147 MVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPS 206
                   G      ++      ++AL  L          L     + L  N+ S     
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL---THLFLHGNRISSVPER 171

Query: 207 EIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLK 266
               L +L  L L  N      P++   L  ++++   AN L     ++++ L  L  L+
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 267 LSNNNLSGKIPLSTQLQSFDPSSFTGNRL-CGSP 299
           L++N                    + + + C  P
Sbjct: 232 LNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 5/134 (3%)

Query: 2   IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLS 61
           +  L L  N  S      +     L  L L  N      P +   L  L +L L  N+LS
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 62  GQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLT 121
                +      L  L + +N +V +        ++ L      S++    LP +L G  
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272

Query: 122 SLHVLDLADNHLSG 135
              +  LA N L G
Sbjct: 273 ---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 25/218 (11%)

Query: 10  NHFSGEIPDCWMNWLDLL-VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASF 68
           N     +     + L  L  L+L         P     L++LQ L L+ N+L      +F
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 69  QNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDL 128
           ++   L  L +  N     VP        SL  L L  N+   V P+    L  L  L L
Sbjct: 150 RDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 129 ADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILK 188
             N+LS    + ++ + ++     +       P V   +                  +  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLN-----DNPWVCDCRARP---------------LWA 248

Query: 189 LMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTG 226
            ++    S ++    +P     L       L+ N   G
Sbjct: 249 WLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 7/208 (3%)

Query: 67  SFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVL 126
                   + ++  +      +P  +        IL+L  N         L   T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 127 DLADNHLSGSIPKCI--SNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN 184
           +L    L+            +  ++ N      +   ++     ++ +   L    +   
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 185 TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFS 244
             L  ++ + L  N+     P  +     L  L L+ N+ T      +  LE++ ++   
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 245 ANQLYGEIPQSISSLTFLSRLKLSNNNL 272
            N LY  IP+       L    L  N  
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 35/233 (15%), Positives = 62/233 (26%), Gaps = 28/233 (12%)

Query: 17  PDCWMNWL-DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLV 75
           P C ++ +   L +N    N T  +P  L        L+L +N L     A+    T+L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 76  MLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSG 135
            L++   E        +      L  L+L  N+ + +            +    +   S 
Sbjct: 59  QLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 136 SIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDL 195
            +                       P + T                        +  + L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTP--------------------KLEKLSL 155

Query: 196 SKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQL 248
           + N  +      +  L  L +L L  NS    IP        +       N  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 10  NHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQ 69
           N      P        L  L+L NNN T      L  L +L +L L++NSL   IP  F 
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 70  NCTKLVMLDIGENEF 84
               L    +  N +
Sbjct: 193 GSHLLPFAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 28  VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGN 87
           VL+L + + T  +   L  L  +  L+L  N L    P +      L +L   +N     
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 88  VPTWIGIRFSSLMILNLRSNKFRGV-LPNQLCGLTSLHVLDLADNHLSGSIPKCISNISS 146
                  R      L L +N+ +       L     L +L+L  N L          ++ 
Sbjct: 59  DGVANLPRL---QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 147 MV 148
           M+
Sbjct: 115 ML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 24/120 (20%)

Query: 191 RLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPN-------------------- 230
           R++ L+    +  +   +  L  +  LDLS N      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 231 -SIGALESILSIDFSANQL-YGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPS 288
             +  L  +  +    N+L      Q + S   L  L L  N+L  +  +  +L    PS
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 13/245 (5%)

Query: 1   GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGN-IPISLGMLSSLQSLNLRKNS 59
           G+   +   +     + +   +   +  ++L N+    + +   L   S LQ+L+L    
Sbjct: 24  GVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 60  LSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCG 119
           LS  I  +    + LV L++              +   S +     S  F     +    
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 120 LTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG- 178
           +  +       N          S++S++V    ++       SV            L   
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 179 --------KAVEYNTILKLMRLIDLSKNKFSGEIPSEIMN--LRALVSLDLSCNSFTGRI 228
                     +   T+L+L  +  L   +  G +P   +     AL  L ++C+ FT   
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIA 262

Query: 229 PNSIG 233
             +IG
Sbjct: 263 RPTIG 267

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 8e-06
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 17  PDCWMNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSLSGQIPASF---- 68
                    L VL L + + + +    +  +L    SL+ L+L  N L            
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 69  -QNCTKLVMLDIGENEFVGNVPTWI 92
            Q    L  L + +  +   +   +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 190 MRLIDLSKNKFSGEIPSEIM-NLRALVSLDLSCNSFTGR----IPNSIGALESILSIDFS 244
           ++ +D+   + S    +E++  L+    + L     T      I +++    ++  ++  
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 245 ANQLYGEIPQSISSLTFLSRLKLSNNNLSG 274
           +N+L       +         K+   +L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 214 LVSLDLSCNSFT-GRIPNSIGALESILSIDFSANQLYGE----IPQSISSLTFLSRLKLS 268
           + SLD+ C   +  R    +  L+    +      L       I  ++     L+ L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 269 NNNLSGKIP 277
           +N L     
Sbjct: 64  SNELGDVGV 72

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 7e-04
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 205 PSEIMNLRALVSLDLSCNSFTGR----IPNSIGALESILSIDFSANQLYGEIPQSISS-- 258
                    L  L L+    +      +  ++ A  S+  +D S N L       +    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 259 ---LTFLSRLKLSNNNLSGKIP 277
                 L +L L +   S ++ 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 9/77 (11%)

Query: 2   IRILKLGENHFSGE----IPDCWMNWLDLLVLNLGNNNFTGNIPISLG-----MLSSLQS 52
           +R+L L +   S      +    +    L  L+L NN       + L          L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 53  LNLRKNSLSGQIPASFQ 69
           L L     S ++    Q
Sbjct: 431 LVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 4/74 (5%)

Query: 74  LVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGV----LPNQLCGLTSLHVLDLA 129
           +  LDI   E        +        ++ L            + + L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 130 DNHLSGSIPKCISN 143
            N L      C+  
Sbjct: 64  SNELGDVGVHCVLQ 77

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 9e-06
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 10  NHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQ 69
           N  +G  P+ +     +  L LG N            L  L++LNL  N +S  +P SF+
Sbjct: 64  NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123

Query: 70  NCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLA 129
           +   L  L++  N F  N        +      +L     R   P+++     + + DL 
Sbjct: 124 HLNSLTSLNLASNPFNCNCHLAWFAEWL--RKKSLNGGAARCGAPSKVRD---VQIKDLP 178

Query: 130 DNHL 133
            +  
Sbjct: 179 HSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 26/205 (12%)

Query: 29  LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNV 88
           ++         IP  +        L L  N L              ++    +   +  +
Sbjct: 13  VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 89  PTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMV 148
                   S +  L L  NK + +      GL  L  L+L DN +S  +P    +++S+ 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 149 TANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEI 208
           + N +         +                        + +R   L+        PS+ 
Sbjct: 130 SLNLASNPFNCNCHL--------------------AWFAEWLRKKSLNGGAARCGAPSK- 168

Query: 209 MNLRALVSLDLSCNSFTGRIPNSIG 233
             +R +   DL  + F     NS G
Sbjct: 169 --VRDVQIKDLPHSEFKCSSENSEG 191

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 195 LSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQ 254
              N  S EI S      +L  L++S N     +P     LE    +  S N L  E+P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHL-AEVPE 321

Query: 255 SISSLTFLSRLKLSNNNLSGKIPLSTQLQS 284
              +L  L    +  N L     +   ++ 
Sbjct: 322 LPQNLKQLH---VEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 10/118 (8%)

Query: 8   GENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPAS 67
               F     + +    +L       N  +  I     +  SL+ LN+  N L  ++PA 
Sbjct: 244 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL 302

Query: 68  FQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHV 125
                 L  L    N         +     +L  L++  N  R   P+    +  L +
Sbjct: 303 PPR---LERLIASFNHL-----AEVPELPQNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 10/94 (10%)

Query: 54  NLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL 113
               N+ S +I +       L  L++  N+        +      L  L    N     +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKL-----IELPALPPRLERLIASFNHLAE-V 319

Query: 114 PNQLCGLTSLHVLDLADNHLSGSIPKCISNISSM 147
           P       +L  L +  N L    P    ++  +
Sbjct: 320 PELP---QNLKQLHVEYNPLR-EFPDIPESVEDL 349

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 24  LDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE 83
                L+L       +    L   +    LN R +  +  +    +N  +L+ L++  N 
Sbjct: 22  GSQQALDLKGLRSDPD----LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNR 76

Query: 84  FVGNVPTWIGI-RFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCIS 142
                     + +  +L ILNL  N+ +            L  L L  N LS +     +
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 143 NISSMV 148
            IS++ 
Sbjct: 137 YISAIR 142

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 24/222 (10%), Positives = 61/222 (27%), Gaps = 15/222 (6%)

Query: 26  LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV 85
            + +  G +N T    ++   L  + +L+     ++       Q    L+ L++ +N+  
Sbjct: 21  AIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI- 75

Query: 86  GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNIS 145
                       +L  +         +                  +     +       +
Sbjct: 76  -----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 146 SMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIP 205
             V            P          ++   +   +     L  +  +    NK S   P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 206 SEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQ 247
             + +L  L+ + L  N  +   P  +    ++  +  + NQ
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 10  NHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQ 69
            +          N   L  L   +N  +   P  L  L +L  ++L+ N +S   P    
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA 214

Query: 70  NCTKLVMLDI 79
           N + L ++ +
Sbjct: 215 NTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 33/224 (14%), Positives = 79/224 (35%), Gaps = 16/224 (7%)

Query: 47  LSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIR-FSSLMILNLR 105
           L++   +   K++++  +  +  +   +  L          V T  G++  ++L+ L L+
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLELK 71

Query: 106 SNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST 165
            N+   + P +     +   L         +I    S  +  +T+               
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG---- 127

Query: 166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFT 225
                  L +   +    + +  L  L  LS         + + NL  L +L    N  +
Sbjct: 128 -LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 226 GRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN 269
              P  + +L +++ +    NQ+    P  +++ + L  + L+N
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 11/75 (14%), Positives = 19/75 (25%)

Query: 5   LKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI 64
           L L +N         +       +    NNN            S    L++ +  +    
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 65  PASFQNCTKLVMLDI 79
               +N  KL     
Sbjct: 218 SYGLENLKKLRARST 232

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 4/160 (2%)

Query: 210 NLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSN 269
                +  +L   S T  +  +   L SI  I  + + +       I  L  +++L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 270 NNLSGKIPLSTQLQSFDPSSFTGNRLCGSPLPNNCFVAAPAPHNESEDDIDGNDDGDEDE 329
           N L+   PL+                  S L +   + + +  +    DI+G     + E
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 330 VNWFYVSLALGFVVGFWFVMGPLFVSRKWRSMYYHFLARL 369
             +   +      V               +      LA L
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.96
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.33

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.6e-34  Score=257.52  Aligned_cols=256  Identities=31%  Similarity=0.575  Sum_probs=192.5

Q ss_pred             ccEEEcCCCcccc--cCCccccCCCCCCEEECcC-CcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEe
Q 046668            2 IRILKLGENHFSG--EIPDCWMNWLDLLVLNLGN-NNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLD   78 (381)
Q Consensus         2 L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   78 (381)
                      ++.|+|+++.++|  .+|..++++++|++|+|++ |.++|.+|.+|+++++|++|+|++|.+.+..+..+..+.+|++++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            4566666666665  3566666666666666664 566666666666666666666666666666666666666666666


Q ss_pred             CcCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCC-CEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668           79 IGENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSL-HVLDLADNHLSGSIPKCISNISSMVTANFSIGTD  157 (381)
Q Consensus        79 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~  157 (381)
                      +++|.+.+.+|..+. .+++++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..              
T Consensus       132 l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~--------------  196 (313)
T d1ogqa_         132 FSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------------  196 (313)
T ss_dssp             CCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------------
T ss_pred             cccccccccCchhhc-cCcccceeeccccccccccccccccccccccccccccccccccccccccc--------------
Confidence            666666666666655 56666666666666666666666665554 56666666666554444332              


Q ss_pred             ccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668          158 VQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES  237 (381)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  237 (381)
                                                   +. ...+++.++...+.+|..+..++.++.+++++|.+.+.++ .+..+++
T Consensus       197 -----------------------------l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~  245 (313)
T d1ogqa_         197 -----------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKN  245 (313)
T ss_dssp             -----------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTT
T ss_pred             -----------------------------cc-cccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence                                         22 4468888999998999999999999999999999986554 5788999


Q ss_pred             CCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC-CCCCCCCCCCC
Q 046668          238 ILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN-RLCGSPLPNNC  304 (381)
Q Consensus       238 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n-~l~~~~~~~~c  304 (381)
                      |+.|++++|++++.+|+.+..+++|++|++++|+++|.+|....++.|+.+++.+| .+||.|.+ .|
T Consensus       246 L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            99999999999999999999999999999999999999998888899999999999 69998764 55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2e-29  Score=224.23  Aligned_cols=230  Identities=28%  Similarity=0.431  Sum_probs=204.2

Q ss_pred             CccEEEcCC-CcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGE-NHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      +|++|+|++ |+++|.+|..|.++++|++|+|++|++.+..+..+..+..|+++++++|.+.+.+|..+.++++|+++++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            589999997 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCcccCChhHHhcCCCC-cEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc
Q 046668           80 GENEFVGNVPTWIGIRFSSL-MILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV  158 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~  158 (381)
                      ++|.+.+.+|..++ .+.++ +.+++++|.+++..+..+..+.. ..++++.+...+..|..+..               
T Consensus       157 ~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~---------------  219 (313)
T d1ogqa_         157 DGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGS---------------  219 (313)
T ss_dssp             CSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCT---------------
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccc-cccccccccccccccccccc---------------
Confidence            99999999998887 56664 89999999999998988887754 47999999888777766554               


Q ss_pred             cCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668          159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                                                  ++.++.+++++|.+.+.+| .+..+++|+.|++++|++++.+|..++.+++|
T Consensus       220 ----------------------------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L  270 (313)
T d1ogqa_         220 ----------------------------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             ----------------------------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             ----------------------------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCC
Confidence                                        3447888888998886554 58889999999999999999999999999999


Q ss_pred             CEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCC
Q 046668          239 LSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIP  277 (381)
Q Consensus       239 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  277 (381)
                      ++|+|++|++++.+|. +..+++|+.+++++|+..|-.|
T Consensus       271 ~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             CEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            9999999999998885 5788999999999999766444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-28  Score=213.90  Aligned_cols=239  Identities=20%  Similarity=0.171  Sum_probs=192.1

Q ss_pred             EEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCc
Q 046668            4 ILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENE   83 (381)
Q Consensus         4 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   83 (381)
                      .++.++++++ .+|..+.  +++++|+|++|+|+.+.+.+|.++++|++|++++|.+....+..+.++..++.++...+.
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            3556666777 5565543  567888888888887777788888888888888888888888888888888888765443


Q ss_pred             CcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCC
Q 046668           84 FVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSV  163 (381)
Q Consensus        84 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~  163 (381)
                      ....++...+.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..                    
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~--------------------  151 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------------------  151 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc--------------------
Confidence            333565555557888888888888887666777778888888888888887554454443                    


Q ss_pred             CCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEec
Q 046668          164 STGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDF  243 (381)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  243 (381)
                                             .++|+.|++++|+++...+..|.++++|+.+++++|++.+..|..|..+++|++|++
T Consensus       152 -----------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         152 -----------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             -----------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -----------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence                                   445889999999999888889999999999999999999888999999999999999


Q ss_pred             cCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCC
Q 046668          244 SANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPS  288 (381)
Q Consensus       244 ~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~  288 (381)
                      ++|.+.+..+..+..+++|++|++++|++.|.|+......+++..
T Consensus       209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~  253 (284)
T d1ozna_         209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF  253 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred             cccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhC
Confidence            999999888889999999999999999999998764333344443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=5.7e-26  Score=200.94  Aligned_cols=263  Identities=22%  Similarity=0.299  Sum_probs=211.0

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      .+.+|=++.+++ .+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+....|.+|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            356777777888 5676663  6899999999999976667899999999999999999988888999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCC--CCcCcccccccccccccccCCcccc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS--GSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      |++. .+|...   ...++.|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++..+....
T Consensus        89 n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          89 NQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            9997 677654   468899999999998766666777788888988887654  2345667788888888887776544


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                      ++..                      .+++|+.|++++|...+..+..|.+++.++.|++++|.+.+..+.++.++++|+
T Consensus       165 l~~~----------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         165 IPQG----------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR  222 (305)
T ss_dssp             CCSS----------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             cCcc----------------------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccce
Confidence            3321                      156789999999999888888899999999999999999987788889999999


Q ss_pred             EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCC--------CCCCccCCCcccCCCC
Q 046668          240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLS--------TQLQSFDPSSFTGNRL  295 (381)
Q Consensus       240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--------~~l~~l~~~~~~~n~l  295 (381)
                      +|+|++|.++ .+|..+..+++|++|++++|+++. ++..        .....+..+++.+|++
T Consensus       223 ~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         223 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             eeeccccccc-ccccccccccCCCEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcC
Confidence            9999999998 567788899999999999999874 3321        2234566666777754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.2e-27  Score=205.45  Aligned_cols=250  Identities=18%  Similarity=0.233  Sum_probs=202.8

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcc-CCccceeCCccccCCCCCCEEeC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLR-KNSLSGQIPASFQNCTKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L   79 (381)
                      ++++|+|++|+|++..+.+|.++++|++|++++|.+..+.+..+.++..++.+... .+.++...+.+|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            47899999999997777789999999999999999998999999999999999775 56777777889999999999999


Q ss_pred             cCCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcccc
Q 046668           80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQ  159 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~  159 (381)
                      ++|.+. .++...+....+|+.+++++|.+++..+..|..+++|++|++++|++....+.+|.+                
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~----------------  175 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG----------------  175 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT----------------
T ss_pred             CCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc----------------
Confidence            999987 555555547889999999999999777788999999999999999998655566655                


Q ss_pred             CCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCC
Q 046668          160 YPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESIL  239 (381)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  239 (381)
                                                 +++|+.+++++|++.+..|..|..+++|++|++++|.+.+..+.+++.+++|+
T Consensus       176 ---------------------------l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         176 ---------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             ---------------------------ccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence                                       44588899999999988899999999999999999999988888999999999


Q ss_pred             EEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCCCCCC
Q 046668          240 SIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGNRLCG  297 (381)
Q Consensus       240 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n~l~~  297 (381)
                      +|++++|.+...-+. ..-...++.+....+.+.|..|..  +.......++.+.++|
T Consensus       229 ~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~--l~g~~l~~l~~~~l~g  283 (284)
T d1ozna_         229 YLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR--LAGRDLKRLAANDLQG  283 (284)
T ss_dssp             EEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGG--GTTCBGGGSCGGGSCC
T ss_pred             EEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchH--HcCCccccCCHHHCCC
Confidence            999999998743221 111123566777778888876643  3333333344444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.7e-26  Score=197.27  Aligned_cols=207  Identities=23%  Similarity=0.242  Sum_probs=172.9

Q ss_pred             cCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCc
Q 046668           21 MNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLM  100 (381)
Q Consensus        21 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  100 (381)
                      .+...+.+.+.+++.++ .+|..+.  +++++|+|++|.+++..+.+|.++++|++|+|++|+++ .++..  ..+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccc
Confidence            45566777788888888 4676665  57899999999998777788999999999999999887 56643  2688999


Q ss_pred             EEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccc
Q 046668          101 ILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKA  180 (381)
Q Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (381)
                      +|+|++|.++ ..+..+..+++|+.|++++|.+....+..+..                                     
T Consensus        81 ~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------------------------  122 (266)
T d1p9ag_          81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------  122 (266)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-------------------------------------
T ss_pred             cccccccccc-ccccccccccccccccccccccceeecccccc-------------------------------------
Confidence            9999999988 45677888999999999999887544433332                                     


Q ss_pred             cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCC
Q 046668          181 VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLT  260 (381)
Q Consensus       181 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  260 (381)
                            +.+++.|++++|.+....+..+..++.++.+++++|++++..+..+..+++|++|+|++|+++ .+|+.+..++
T Consensus       123 ------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~  195 (266)
T d1p9ag_         123 ------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (266)
T ss_dssp             ------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ------ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCC
Confidence                  455888899999998777888889999999999999999877888999999999999999999 7787788899


Q ss_pred             CCCeeeCCCCcceecCCC
Q 046668          261 FLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       261 ~L~~L~l~~N~l~~~~~~  278 (381)
                      +|+.|++++|+|.|+|..
T Consensus       196 ~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         196 LLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCSEEECCSCCBCCSGGG
T ss_pred             CCCEEEecCCCCCCCcch
Confidence            999999999999998864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.4e-25  Score=195.91  Aligned_cols=247  Identities=20%  Similarity=0.255  Sum_probs=202.4

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|+|++|+|+...+.+|.++++|++|++++|.+....|.+|.++++|++|++++|+++ .+|..+  ...++.|++.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhcc
Confidence            4789999999999666678999999999999999999888999999999999999999998 455433  4689999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEccccccc--ccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFR--GVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDV  158 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~  158 (381)
                      +|.+. .++...+.....++.++...|...  ...+..+..+++|+.+++++|.+. .+|..+  .++++.++++.+...
T Consensus       109 ~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         109 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT  184 (305)
T ss_dssp             SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCC
T ss_pred             ccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCC
Confidence            99997 677666657788889998877544  344567888999999999999987 455443  567888877766543


Q ss_pred             cCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCC
Q 046668          159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESI  238 (381)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  238 (381)
                      ...                   ...+..++.++.|++++|.+.+..+..+.++++|++|+|++|.++ .+|.++..+++|
T Consensus       185 ~~~-------------------~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         185 KVD-------------------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             EEC-------------------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             CCC-------------------hhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCC
Confidence            221                   123345778999999999999888999999999999999999998 778899999999


Q ss_pred             CEEeccCCcCcccCchh------hhCCCCCCeeeCCCCccee
Q 046668          239 LSIDFSANQLYGEIPQS------ISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       239 ~~L~L~~n~l~~~~~~~------l~~l~~L~~L~l~~N~l~~  274 (381)
                      ++|++++|+|+......      ...+++|+.|++++|++..
T Consensus       245 ~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            99999999998543333      3456789999999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=4.6e-24  Score=194.57  Aligned_cols=274  Identities=20%  Similarity=0.249  Sum_probs=172.9

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++++|+..  +.+..+++|++|++++|++++..  .|+++++|++|++++|.+.+..  .+.++++|+.|+++
T Consensus        45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~  118 (384)
T d2omza2          45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLF  118 (384)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccccc
Confidence            478999999998853  45788999999999999998543  3889999999999999998543  38899999999998


Q ss_pred             CCcCcccCCh--------------------------------------------------------------hHHhcCCC
Q 046668           81 ENEFVGNVPT--------------------------------------------------------------WIGIRFSS   98 (381)
Q Consensus        81 ~n~l~~~~~~--------------------------------------------------------------~~~~~l~~   98 (381)
                      ++.+.+..+.                                                              .....+++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (384)
T d2omza2         119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN  198 (384)
T ss_dssp             SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            8766421000                                                              11114556


Q ss_pred             CcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEec
Q 046668           99 LMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKG  178 (381)
Q Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (381)
                      ++.+++++|.+++..+  +...++|++|++++|.++.  ...+..+++|+.+++..+.....+.....  .......+..
T Consensus       199 ~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~  272 (384)
T d2omza2         199 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGL--TKLTELKLGA  272 (384)
T ss_dssp             CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTC--TTCSEEECCS
T ss_pred             cceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCccccc--ccCCEeeccC
Confidence            6666776666664432  3445667777777776653  23456666677776666654443332211  1111111211


Q ss_pred             cc---cchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchh
Q 046668          179 KA---VEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQS  255 (381)
Q Consensus       179 ~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  255 (381)
                      ..   ...+..++.++.+++..|.+++  ...+..++++++|++++|++++. + .+..+++|++|++++|++++ ++ .
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~  346 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-S  346 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-G
T ss_pred             cccCCCCcccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-h
Confidence            11   1223345556666666666543  22356667777777777777643 2 25667777777777777763 33 4


Q ss_pred             hhCCCCCCeeeCCCCcceecCCCCCCCCccCCCcccCC
Q 046668          256 ISSLTFLSRLKLSNNNLSGKIPLSTQLQSFDPSSFTGN  293 (381)
Q Consensus       256 l~~l~~L~~L~l~~N~l~~~~~~~~~l~~l~~~~~~~n  293 (381)
                      +..+++|++|++++|++++..| ...++.|+.+++++|
T Consensus       347 l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         347 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             HcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            6677777777777777765443 344556666665554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=9.1e-24  Score=192.58  Aligned_cols=251  Identities=21%  Similarity=0.263  Sum_probs=196.6

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcccee-----------------
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ-----------------   63 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------   63 (381)
                      +|++|++++|++++..  .++++++|++|++++|.+.+..  .++++++|+.|+++++.+++.                 
T Consensus        67 nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
T d2omza2          67 NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  142 (384)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred             CCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999653  3899999999999999998543  378999999999998776421                 


Q ss_pred             ----------------------------------------------CCccccCCCCCCEEeCcCCcCcccCChhHHhcCC
Q 046668           64 ----------------------------------------------IPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFS   97 (381)
Q Consensus        64 ----------------------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~   97 (381)
                                                                    ....+..+++++.+++++|.+.+..| . . .++
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~-~-~~~  219 (384)
T d2omza2         143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-L-G-ILT  219 (384)
T ss_dssp             EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G-G-GCT
T ss_pred             cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-c-c-ccC
Confidence                                                          11235567889999999999884433 2 2 578


Q ss_pred             CCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEe
Q 046668           98 SLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLK  177 (381)
Q Consensus        98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (381)
                      +|++|++++|.++..  +.+..+++|+.|++++|.+++..  .+..+++|+.++++.+.....+.......  .......
T Consensus       220 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--l~~l~~~  293 (384)
T d2omza2         220 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTA--LTNLELN  293 (384)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTT--CSEEECC
T ss_pred             CCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCccccccc--ccccccc
Confidence            999999999998843  46788999999999999998543  37788999999998887665544322211  1122222


Q ss_pred             cc---ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCch
Q 046668          178 GK---AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQ  254 (381)
Q Consensus       178 ~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  254 (381)
                      ..   ....+..++.++.|++++|++++..  .+..+++|++|++++|.++ .++ .++++++|++|++++|++++..| 
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             ccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-
Confidence            21   2345677899999999999998654  3889999999999999998 444 58999999999999999996554 


Q ss_pred             hhhCCCCCCeeeCCCC
Q 046668          255 SISSLTFLSRLKLSNN  270 (381)
Q Consensus       255 ~l~~l~~L~~L~l~~N  270 (381)
                       +..+++|+.|++++|
T Consensus       369 -l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 -LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GTTCTTCSEEECCCE
T ss_pred             -hccCCCCCEeeCCCC
Confidence             789999999999998

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-24  Score=184.45  Aligned_cols=197  Identities=20%  Similarity=0.202  Sum_probs=169.7

Q ss_pred             ccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            2 IRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         2 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      +...+.++++++ .+|..+.  +++++|+|++|.++++.+.+|.++++|++|+|++|.++.. + .+..+++|++|++++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccc
Confidence            346788999999 5676653  5899999999999988888999999999999999999854 3 467899999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCC
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYP  161 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~  161 (381)
                      |++. ..+..+. .+++|+.|++++|.+....+..+..+.++++|++++|.+....+..+..                  
T Consensus        87 N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~------------------  146 (266)
T d1p9ag_          87 NQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------------------  146 (266)
T ss_dssp             SCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT------------------
T ss_pred             cccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccc------------------
Confidence            9997 4555554 7999999999999999888888899999999999999998544444433                  


Q ss_pred             CCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668          162 SVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI  241 (381)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  241 (381)
                                               ++.++.+++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|
T Consensus       147 -------------------------l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         147 -------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA  200 (266)
T ss_dssp             -------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred             -------------------------cccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEE
Confidence                                     455889999999999888888999999999999999999 888888889999999


Q ss_pred             eccCCcCc
Q 046668          242 DFSANQLY  249 (381)
Q Consensus       242 ~L~~n~l~  249 (381)
                      +|++|.+.
T Consensus       201 ~L~~Np~~  208 (266)
T d1p9ag_         201 FLHGNPWL  208 (266)
T ss_dssp             ECCSCCBC
T ss_pred             EecCCCCC
Confidence            99999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.2e-19  Score=152.77  Aligned_cols=190  Identities=22%  Similarity=0.321  Sum_probs=118.2

Q ss_pred             ccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCC
Q 046668           20 WMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSL   99 (381)
Q Consensus        20 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   99 (381)
                      +..+.+|+.|++.+|.++.. + .+..+++|++|++++|.+.+..  .+.++++|+++++++|.++ .++. +. .+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~~-l~-~l~~L  109 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVSA-IA-GLQSI  109 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCGG-GT-TCTTC
T ss_pred             HHHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-cccc-cc-ccccc
Confidence            34456666666666666532 2 3556666666666666665332  2566666666666666554 3332 22 45666


Q ss_pred             cEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEecc
Q 046668          100 MILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGK  179 (381)
Q Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (381)
                      +.++++++...+.  ..+...+.++.+.++.+.+....                                          
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------------------------------------------  145 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS------------------------------------------  145 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG------------------------------------------
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhchhh------------------------------------------
Confidence            6666665554422  23444555666665555543211                                          


Q ss_pred             ccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCC
Q 046668          180 AVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSL  259 (381)
Q Consensus       180 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  259 (381)
                         .+..++.|+.|++++|.+....  .+..+++|++|++++|++++ ++ .++++++|++|++++|++++. +. +..+
T Consensus       146 ---~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~~-l~~l  216 (227)
T d1h6ua2         146 ---PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-SP-LANT  216 (227)
T ss_dssp             ---GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-GG-GTTC
T ss_pred             ---hhccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-cc-cccC
Confidence               1122556888888888776332  37788889999999988874 43 377888999999999988853 32 7788


Q ss_pred             CCCCeeeCCC
Q 046668          260 TFLSRLKLSN  269 (381)
Q Consensus       260 ~~L~~L~l~~  269 (381)
                      ++|+.|++++
T Consensus       217 ~~L~~L~lsn  226 (227)
T d1h6ua2         217 SNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEEeeC
Confidence            8888888864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=153.97  Aligned_cols=221  Identities=12%  Similarity=0.044  Sum_probs=111.1

Q ss_pred             CEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEccc
Q 046668           27 LVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS  106 (381)
Q Consensus        27 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  106 (381)
                      ++++.++..++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+...++...+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45555555555 4444432  35666666666665444455666666666666666655444444443556666665542


Q ss_pred             -ccccccCCcCccCCCCCCEEeccCCcCCCCcCcc-cccccccccccccCCccccCCCCCCCccccceEEEEeccccchh
Q 046668          107 -NKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKC-ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYN  184 (381)
Q Consensus       107 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (381)
                       |.+....+..|.++++|+++++++|.+....+.. +..+..+............++....                  .
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~------------------~  149 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF------------------V  149 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSS------------------T
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccc------------------c
Confidence             4455455555666666666666666654221111 1111111111111111110000000                  0


Q ss_pred             hhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCe
Q 046668          185 TILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSR  264 (381)
Q Consensus       185 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  264 (381)
                      .....++.|++++|+++...+..+....-.+.+++++|.++...+..|.++++|++|++++|+++...+..+..+++|+.
T Consensus       150 ~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             TSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             cccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            01234666777777776444444433322333356666776444445677777777777777777444445555555555


Q ss_pred             eeCC
Q 046668          265 LKLS  268 (381)
Q Consensus       265 L~l~  268 (381)
                      +++.
T Consensus       230 l~~~  233 (242)
T d1xwdc1         230 RSTY  233 (242)
T ss_dssp             SSEE
T ss_pred             CcCC
Confidence            5544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-19  Score=154.25  Aligned_cols=219  Identities=12%  Similarity=0.067  Sum_probs=149.6

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcccee-CCccccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ-IPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~   81 (381)
                      +.++.++..++ .+|..+.  +++++|++++|.++.+.+.+|.++++|++|++++|.+... .+.+|.++++++++++..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            46677777777 5665542  5789999999999877777888999999999999987643 456788899999988764


Q ss_pred             -CcCcccCChhHHhcCCCCcEEEcccccccccCCc-CccCCCCCCEEeccCCcCCCCcCccccccc-ccccccccCCccc
Q 046668           82 -NEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPN-QLCGLTSLHVLDLADNHLSGSIPKCISNIS-SMVTANFSIGTDV  158 (381)
Q Consensus        82 -n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~l~~~~~~~~  158 (381)
                       |.+. ..+...+..+++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .+..++++.+...
T Consensus        88 ~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCC-EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccc-ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             5565 44444444788999999999888743221 233445555556666666644455565553 5666666655443


Q ss_pred             cCCCCCCCccccceEEEEeccccchhhhcccc-cEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCC
Q 046668          159 QYPSVSTGKYVEDALLVLKGKAVEYNTILKLM-RLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALES  237 (381)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  237 (381)
                      .++....                    ....+ +.+++.+|+++...+..|.++++|++|++++|+++...+..|.+++.
T Consensus       167 ~i~~~~~--------------------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         167 EIHNCAF--------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             EECTTTT--------------------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             ccccccc--------------------cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcc
Confidence            3222111                    12233 34456788888666677999999999999999999555556777777


Q ss_pred             CCEEeccC
Q 046668          238 ILSIDFSA  245 (381)
Q Consensus       238 L~~L~L~~  245 (381)
                      |+.+++.+
T Consensus       227 L~~l~~~~  234 (242)
T d1xwdc1         227 LRARSTYN  234 (242)
T ss_dssp             EESSSEES
T ss_pred             cccCcCCC
Confidence            77666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.3e-18  Score=144.72  Aligned_cols=185  Identities=22%  Similarity=0.362  Sum_probs=149.3

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++.+|+++. + ..+.++++|++|++++|.+++..+  +.++++|+++++++|.++. + ..+.++++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccccccc
Confidence            58999999999985 4 358999999999999999986543  8899999999999998873 3 368899999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccC
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQY  160 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~  160 (381)
                      ++...+ ++. +. ..+.++.+.++++.+...  ..+...++|++|++++|.+.+..  .+.+                 
T Consensus       116 ~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~-----------------  171 (227)
T d1h6ua2         116 STQITD-VTP-LA-GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLAN-----------------  171 (227)
T ss_dssp             TSCCCC-CGG-GT-TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTT-----------------
T ss_pred             cccccc-cch-hc-cccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcc-----------------
Confidence            998763 332 22 578999999999887743  34677899999999999876321  1322                 


Q ss_pred             CCCCCCccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCE
Q 046668          161 PSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILS  240 (381)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  240 (381)
                                                +++|+.|++++|++++. + .+..+++|++|++++|++++ ++ .++++++|++
T Consensus       172 --------------------------l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~  221 (227)
T d1h6ua2         172 --------------------------LSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFI  221 (227)
T ss_dssp             --------------------------CTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCE
T ss_pred             --------------------------cccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCE
Confidence                                      45689999999998753 3 38899999999999999984 44 3789999999


Q ss_pred             EeccC
Q 046668          241 IDFSA  245 (381)
Q Consensus       241 L~L~~  245 (381)
                      |++++
T Consensus       222 L~lsn  226 (227)
T d1h6ua2         222 VTLTN  226 (227)
T ss_dssp             EEEEE
T ss_pred             EEeeC
Confidence            99874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2.2e-19  Score=146.90  Aligned_cols=105  Identities=23%  Similarity=0.284  Sum_probs=62.5

Q ss_pred             CCEEECcCCcCcccCCccCCCCCCCCEEEccCCccce-eCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEc
Q 046668           26 LLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSG-QIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNL  104 (381)
Q Consensus        26 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  104 (381)
                      .++++.++++++ .+|..+.  +++++|+|++|.+++ ..+..|.++++|++|++++|.+. .++...+..+++|++|+|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeee
Confidence            346667777666 4555443  466677777776653 33455666666666666666665 333333335666666666


Q ss_pred             ccccccccCCcCccCCCCCCEEeccCCcCC
Q 046668          105 RSNKFRGVLPNQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  134 (381)
                      ++|+++...+..|.++++|++|+|++|+++
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             ccccccccCHHHHhCCCcccccccCCcccc
Confidence            666666555555666666666666666555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1.2e-17  Score=149.49  Aligned_cols=118  Identities=24%  Similarity=0.296  Sum_probs=88.6

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCC-CCCCEEeC
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNC-TKLVMLDI   79 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L   79 (381)
                      ++++|||++++++ .+|+.   .++|++|++++|+|+ .+|+.   ..+|++|++++|.++ .++    .+ +.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~----~lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS----DLPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC----SCCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh----hhccccccccc
Confidence            4789999999998 57764   478999999999998 56765   458899999999887 333    23 46999999


Q ss_pred             cCCcCcccCChhHHhcCCCCcEEEcccccccccC------------------CcCccCCCCCCEEeccCCcCC
Q 046668           80 GENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVL------------------PNQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus        80 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------~~~~~~l~~L~~L~L~~n~l~  134 (381)
                      ++|.+. .+|.. . .+++|++|+++++.+....                  ...+..++.++.+++++|...
T Consensus       106 ~~n~l~-~lp~~-~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         106 SNNQLE-KLPEL-Q-NSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CSSCCS-SCCCC-T-TCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccc-cccch-h-hhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            999987 67753 3 6899999999988765221                  123455666777777776654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.2e-18  Score=142.92  Aligned_cols=181  Identities=21%  Similarity=0.307  Sum_probs=128.2

Q ss_pred             EECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEccccc
Q 046668           29 LNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSNK  108 (381)
Q Consensus        29 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  108 (381)
                      .+++.+.+++..+.  ..+.+|++|++++|.++.. + .+..+++|++|++++|+++ .++. +. .+++|++|++++|.
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENK  101 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCcccc-Cccc-cc-cCcccccccccccc
Confidence            35566666544432  2466888888888888743 2 3778888888888888887 4443 33 68888888888888


Q ss_pred             ccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcc
Q 046668          109 FRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILK  188 (381)
Q Consensus       109 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (381)
                      +++. + .+..+++|+.|++++|.+.. + ..+..                                           ++
T Consensus       102 i~~l-~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~-------------------------------------------l~  134 (210)
T d1h6ta2         102 VKDL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVH-------------------------------------------LP  134 (210)
T ss_dssp             CCCG-G-GGTTCTTCCEEECTTSCCCC-C-GGGGG-------------------------------------------CT
T ss_pred             cccc-c-cccccccccccccccccccc-c-ccccc-------------------------------------------cc
Confidence            8743 3 47788888888888887652 1 12222                                           44


Q ss_pred             cccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCC
Q 046668          189 LMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLS  268 (381)
Q Consensus       189 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  268 (381)
                      .++.+++++|.+++  +..+..+++|+++++++|.+++ ++ .+.++++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus       135 ~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            57777777777753  3346778888888888888874 33 37788888999999888874 44 47888888888886


Q ss_pred             C
Q 046668          269 N  269 (381)
Q Consensus       269 ~  269 (381)
                      +
T Consensus       209 ~  209 (210)
T d1h6ta2         209 S  209 (210)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=7e-19  Score=143.82  Aligned_cols=60  Identities=23%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             ccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCc
Q 046668          190 MRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLY  249 (381)
Q Consensus       190 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  249 (381)
                      |+.|++++|++....+..|.++++|++|+|++|++++..+.+|..+++|++|+|++|.+.
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            333444444444344444444555555555555555444444445555555555555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=6.4e-18  Score=138.86  Aligned_cols=178  Identities=22%  Similarity=0.375  Sum_probs=115.2

Q ss_pred             EEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEcccc
Q 046668           28 VLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRSN  107 (381)
Q Consensus        28 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  107 (381)
                      ...++.+.+++..+.  ..+.++++|++++|.++. + +.+..+++|++|++++|+++ .++. +. .+++|++|++++|
T Consensus        22 ~~~l~~~~~~~~~~~--~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~l~~n   94 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNN   94 (199)
T ss_dssp             HHHTTCSSTTSEECH--HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSS
T ss_pred             HHHhCCCCCCCccCH--HHhcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccccc-Cccc-cc-CCccccccccccc
Confidence            344556665543322  245677777777777763 2 24667777777777777776 3332 33 6777777777777


Q ss_pred             cccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhc
Q 046668          108 KFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTIL  187 (381)
Q Consensus       108 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (381)
                      .+... + .+.++++|++|++++|.....  ..+.                                           .+
T Consensus        95 ~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~-------------------------------------------~l  127 (199)
T d2omxa2          95 QIADI-T-PLANLTNLTGLTLFNNQITDI--DPLK-------------------------------------------NL  127 (199)
T ss_dssp             CCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGT-------------------------------------------TC
T ss_pred             ccccc-c-ccccccccccccccccccccc--cccc-------------------------------------------hh
Confidence            76633 2 366777788888777766521  1121                                           14


Q ss_pred             ccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCee
Q 046668          188 KLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRL  265 (381)
Q Consensus       188 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  265 (381)
                      ++|+.|++++|++.. + ..+..+++|++|++++|.+++ ++ .++++++|++|++++|++++ ++ .+..+++|++|
T Consensus       128 ~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            457777777777752 2 347778888888888888874 33 36788888888888888874 33 46777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.5e-17  Score=137.71  Aligned_cols=179  Identities=20%  Similarity=0.281  Sum_probs=139.3

Q ss_pred             cCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcc
Q 046668            7 LGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVG   86 (381)
Q Consensus         7 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   86 (381)
                      +..+.+++.++.  ..+.+|+.|++++|.+++. + .+..+++|++|++++|.+++. + .+.++++|++|++++|+++ 
T Consensus        31 l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-  103 (210)
T d1h6ta2          31 LKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-  103 (210)
T ss_dssp             TTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-
T ss_pred             hCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-
Confidence            344555544332  3577899999999999854 3 377899999999999999854 3 4688999999999999997 


Q ss_pred             cCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCC
Q 046668           87 NVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTG  166 (381)
Q Consensus        87 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  166 (381)
                      .++. +. .+++|+.|++++|.+..  ...+..+++++.+++++|.+++.  ..+.                        
T Consensus       104 ~l~~-l~-~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~------------------------  153 (210)
T d1h6ta2         104 DLSS-LK-DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLS------------------------  153 (210)
T ss_dssp             CGGG-GT-TCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGG------------------------
T ss_pred             cccc-cc-ccccccccccccccccc--ccccccccccccccccccccccc--cccc------------------------
Confidence            5663 43 78999999999998773  24678899999999999988632  1122                        


Q ss_pred             ccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccC
Q 046668          167 KYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSA  245 (381)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  245 (381)
                                         .+++|+.+++++|++++..  .+..+++|++|++++|.++ .++ .+.++++|++|+|++
T Consensus       154 -------------------~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 -------------------RLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------------------GCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             -------------------ccccccccccccccccccc--cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence                               2556889999999987543  3889999999999999998 455 588999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=8.6e-17  Score=131.98  Aligned_cols=176  Identities=24%  Similarity=0.390  Sum_probs=137.2

Q ss_pred             EcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCc
Q 046668            6 KLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFV   85 (381)
Q Consensus         6 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   85 (381)
                      .++.+.+++..+  ...+.++++|++++|.++..  +.+..+++|++|++++|.+++..+  +.++++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            355666665433  34688999999999999843  357789999999999999985433  899999999999999887


Q ss_pred             ccCChhHHhcCCCCcEEEcccccccccCCcCccCCCCCCEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCC
Q 046668           86 GNVPTWIGIRFSSLMILNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVST  165 (381)
Q Consensus        86 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~  165 (381)
                       .++. +. .+++|+.|+++++.....  ..+..+++|+.|++++|++.. ++ .+..                      
T Consensus        98 -~~~~-l~-~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~----------------------  148 (199)
T d2omxa2          98 -DITP-LA-NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSG----------------------  148 (199)
T ss_dssp             -CCGG-GT-TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTT----------------------
T ss_pred             -cccc-cc-cccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccc----------------------
Confidence             5553 43 789999999999988743  457889999999999998762 22 2322                      


Q ss_pred             CccccceEEEEeccccchhhhcccccEEEccCCcccccCchhhhccccCcEEeCCCcccccccChhhhccCCCCEE
Q 046668          166 GKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSI  241 (381)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  241 (381)
                                           +++++.|++.+|++++..  .++++++|++|++++|++++ ++ .++.+++|++|
T Consensus       149 ---------------------~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         149 ---------------------LTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ---------------------CTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ---------------------cccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence                                 455888899999887543  48899999999999999984 44 47888888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=9.6e-16  Score=136.92  Aligned_cols=245  Identities=20%  Similarity=0.256  Sum_probs=148.2

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +|++|++++|+|+ .+|+.+   .+|+.|++++|.++. +++ +.  +.|++|++++|.+. .+|. +..+++|++|+++
T Consensus        59 ~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~-lp--~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSD-LP--PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCS-CC--TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhh-hc--cccccccccccccc-cccc-hhhhccceeeccc
Confidence            5899999999999 667654   589999999999883 332 21  46999999999998 4554 6789999999999


Q ss_pred             CCcCcccCCh-------------------hHHhcCCCCcEEEcccccccccC------------------CcCccCCCCC
Q 046668           81 ENEFVGNVPT-------------------WIGIRFSSLMILNLRSNKFRGVL------------------PNQLCGLTSL  123 (381)
Q Consensus        81 ~n~l~~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~~~------------------~~~~~~l~~L  123 (381)
                      ++.+.. .+.                   .+. .++.++.+++..|......                  ...+..++.|
T Consensus       129 ~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~l~-~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L  206 (353)
T d1jl5a_         129 NNSLKK-LPDLPPSLEFIAAGNNQLEELPELQ-NLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL  206 (353)
T ss_dssp             SSCCSC-CCCCCTTCCEEECCSSCCSSCCCCT-TCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred             cccccc-cccccccccchhhcccccccccccc-ccccceecccccccccccccccccccccccccccccccccccccccc
Confidence            987652 221                   111 3566777887776654211                  1123445666


Q ss_pred             CEEeccCCcCCCCcCcccccccccccccccCCccccCCCCCCCccccceEEEEeccccchhh-hcccccEEEccCCcccc
Q 046668          124 HVLDLADNHLSGSIPKCISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNT-ILKLMRLIDLSKNKFSG  202 (381)
Q Consensus       124 ~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~n~~~~  202 (381)
                      +.+++++|... ..+.....+..   ..+..+.....+....    ..............+. ........++..+.+.+
T Consensus       207 ~~l~l~~n~~~-~~~~~~~~l~~---~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  278 (353)
T d1jl5a_         207 TTIYADNNLLK-TLPDLPPSLEA---LNVRDNYLTDLPELPQ----SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS  278 (353)
T ss_dssp             CEEECCSSCCS-SCCSCCTTCCE---EECCSSCCSCCCCCCT----TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE
T ss_pred             ccccccccccc-ccccccccccc---cccccccccccccccc----cccccccccccccccccccchhcccccccCcccc
Confidence            66666666554 23333322222   2222221111111000    0000000000011111 12234445555555542


Q ss_pred             cCchhhhccccCcEEeCCCcccccccChhhhccCCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCcceecCCC
Q 046668          203 EIPSEIMNLRALVSLDLSCNSFTGRIPNSIGALESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSGKIPL  278 (381)
Q Consensus       203 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  278 (381)
                      .    ...+++|++|++++|+++ .+|..   +++|++|++++|+++ .+|.   .+++|++|++++|+++ .+|.
T Consensus       279 ~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         279 L----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             E----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             c----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCc
Confidence            2    234678999999999998 66653   578999999999998 5664   3468999999999987 4554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=124.91  Aligned_cols=129  Identities=17%  Similarity=0.190  Sum_probs=95.2

Q ss_pred             cccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCC
Q 046668           19 CWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSS   98 (381)
Q Consensus        19 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~   98 (381)
                      .|.+...+++|+|++|+|+. ++..+..+++|++|++++|.++..  +.|..+++|++|++++|++. .++..++..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            35677788888888888874 455666788888888888888743  34788888888888888887 566555557888


Q ss_pred             CcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcC----cccccccccccccc
Q 046668           99 LMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIP----KCISNISSMVTANF  152 (381)
Q Consensus        99 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~l~~  152 (381)
                      |++|++++|.++.... ..+..+++|++|++++|.++. .|    ..+..+++|+.++.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred             cccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence            8888888888874321 457778888888888888763 33    24677777777753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.6e-16  Score=137.81  Aligned_cols=223  Identities=14%  Similarity=0.199  Sum_probs=136.3

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCcccee-CCccccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQ-IPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~   81 (381)
                      +.+|++++.+.......+.. .....+.++...+...... ......|++|+++++.+... +...+.++++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            57899988765322222211 3566777777666533333 33456899999999887643 345578889999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEcccc-ccccc-CCcCccCCCCCCEEeccCCc-CCCC-cCcccccccccccccccCCcc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSN-KFRGV-LPNQLCGLTSLHVLDLADNH-LSGS-IPKCISNISSMVTANFSIGTD  157 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~l~~~~~~~  157 (381)
                      +.+.+..+..+. .+++|++|+++++ .++.. +...+..+++|++|+++++. ++.. +...+...             
T Consensus        81 ~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~-------------  146 (284)
T d2astb2          81 LRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-------------  146 (284)
T ss_dssp             CBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS-------------
T ss_pred             cCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc-------------
Confidence            988766666665 6889999999884 45422 12234567889999998864 3211 11111111             


Q ss_pred             ccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCC--ccccc-CchhhhccccCcEEeCCCc-ccccccChhhh
Q 046668          158 VQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKN--KFSGE-IPSEIMNLRALVSLDLSCN-SFTGRIPNSIG  233 (381)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n--~~~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~  233 (381)
                                                   .+.|+.|+++++  .++.. +...+..+++|++|++++| .+++.....+.
T Consensus       147 -----------------------------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~  197 (284)
T d2astb2         147 -----------------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  197 (284)
T ss_dssp             -----------------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             -----------------------------ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhc
Confidence                                         234666666653  22221 2223345677777777664 35555556666


Q ss_pred             ccCCCCEEeccCC-cCcccCchhhhCCCCCCeeeCCCC
Q 046668          234 ALESILSIDFSAN-QLYGEIPQSISSLTFLSRLKLSNN  270 (381)
Q Consensus       234 ~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~N  270 (381)
                      .+++|++|++++| .+++.....+..+++|+.|+++++
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            6777777777774 455444455666677777777665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.3e-16  Score=116.07  Aligned_cols=118  Identities=21%  Similarity=0.269  Sum_probs=83.5

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGEN   82 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   82 (381)
                      |+|++++|+++ .++ .+.++++|++|++++|.++ .+|..|+.+++|++|++++|.+++ +| .+.++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57888888887 444 4778888888888888887 556678888888888888888874 33 4788888888888888


Q ss_pred             cCcccCCh-hHHhcCCCCcEEEcccccccccC---CcCccCCCCCCEE
Q 046668           83 EFVGNVPT-WIGIRFSSLMILNLRSNKFRGVL---PNQLCGLTSLHVL  126 (381)
Q Consensus        83 ~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L  126 (381)
                      ++. .++. .....+++|++|++++|.+....   ......+|+|+.|
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            886 4442 22236778888888888776332   1223335666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.1e-16  Score=135.17  Aligned_cols=228  Identities=16%  Similarity=0.142  Sum_probs=153.6

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCccc-CCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGN-IPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      ..+.++...+...... .....+|++||++++.++.. +...+..+++|++|+++++.+.+..+..+..+++|++|++++
T Consensus        26 ~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          26 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             eEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            4556666655433333 23556899999999988643 445578899999999999998877788889999999999999


Q ss_pred             C-cCcccCChhHHhcCCCCcEEEccccc-cccc-CCcCc-cCCCCCCEEeccCCcCCCCcCcccccccccccccccCCcc
Q 046668           82 N-EFVGNVPTWIGIRFSSLMILNLRSNK-FRGV-LPNQL-CGLTSLHVLDLADNHLSGSIPKCISNISSMVTANFSIGTD  157 (381)
Q Consensus        82 n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~~~~~~~  157 (381)
                      + .+++..-..+...+++|++|+++++. ++.. ....+ ...++|+.|+++++... .....+.               
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-i~~~~l~---------------  168 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN-LQKSDLS---------------  168 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG-SCHHHHH---------------
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc-ccccccc---------------
Confidence            6 44422222344478999999999863 3321 11222 23478999999875321 0001110               


Q ss_pred             ccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCC-cccccCchhhhccccCcEEeCCCc-ccccccChhhhcc
Q 046668          158 VQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKN-KFSGEIPSEIMNLRALVSLDLSCN-SFTGRIPNSIGAL  235 (381)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l  235 (381)
                                              .....+++|+.|++++| .+++.....+..+++|++|++++| .+++.....++.+
T Consensus       169 ------------------------~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         169 ------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             ------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ------------------------ccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence                                    11233567999999886 467667778889999999999995 6776667778889


Q ss_pred             CCCCEEeccCCcCcccCchhhhCCCCCCeeeCCCCccee
Q 046668          236 ESILSIDFSANQLYGEIPQSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       236 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~  274 (381)
                      ++|++|+++++--.+.++.....+|+|   ++..++++.
T Consensus       225 ~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~  260 (284)
T d2astb2         225 PTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTT  260 (284)
T ss_dssp             TTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCC
T ss_pred             CCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCC
Confidence            999999999882222233333445554   456666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.4e-16  Score=123.52  Aligned_cols=125  Identities=17%  Similarity=0.114  Sum_probs=103.8

Q ss_pred             CccEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            1 GIRILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         1 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      ++++|+|++|+|+. ++..+..+++|++|+|++|.++..  +.|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            47899999999994 577778899999999999999854  358899999999999999997777778899999999999


Q ss_pred             CCcCcccCCh-hHHhcCCCCcEEEcccccccccCC---cCccCCCCCCEEecc
Q 046668           81 ENEFVGNVPT-WIGIRFSSLMILNLRSNKFRGVLP---NQLCGLTSLHVLDLA  129 (381)
Q Consensus        81 ~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  129 (381)
                      +|++. .++. .....+++|++|++++|.++....   ..+..+|+|+.||-.
T Consensus        96 ~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          96 NNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             SCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            99997 4543 223378999999999999984321   257789999998743

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=2.4e-16  Score=140.83  Aligned_cols=244  Identities=14%  Similarity=0.144  Sum_probs=153.3

Q ss_pred             CCccccCCCCCCEEECcCCcCcc----cCCccCCCCCCCCEEEccCCcccee----------CCccccCCCCCCEEeCcC
Q 046668           16 IPDCWMNWLDLLVLNLGNNNFTG----NIPISLGMLSSLQSLNLRKNSLSGQ----------IPASFQNCTKLVMLDIGE   81 (381)
Q Consensus        16 ~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~   81 (381)
                      +...+.....|+.|+|++|.+..    .+...+...++|+.|+++++.....          +...+..+++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            34556667888888888887753    2334566778888888887643211          223455678888888888


Q ss_pred             CcCccc----CChhHHhcCCCCcEEEcccccccccCC-------------cCccCCCCCCEEeccCCcCCCC----cCcc
Q 046668           82 NEFVGN----VPTWIGIRFSSLMILNLRSNKFRGVLP-------------NQLCGLTSLHVLDLADNHLSGS----IPKC  140 (381)
Q Consensus        82 n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~----~~~~  140 (381)
                      |.+...    +...+. ..++|++|++++|.+.....             ......+.|+.+++++|.+...    +...
T Consensus       103 n~i~~~~~~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             CCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             cccccccccchhhhhc-ccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            877533    222222 56788888888887642110             0123456788888888877632    2233


Q ss_pred             cccccccccccccCCccccCCCCCCCccccceEEEEeccccchhhhcccccEEEccCCccccc----CchhhhccccCcE
Q 046668          141 ISNISSMVTANFSIGTDVQYPSVSTGKYVEDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE----IPSEIMNLRALVS  216 (381)
Q Consensus       141 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~  216 (381)
                      +...+.++.++++.+......              ........+...++|+.|++++|.++..    +...+..+++|++
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g--------------~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEG--------------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHH--------------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             hhhhhhhcccccccccccccc--------------cccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            455667777776655432100              0000112234567788999999887643    3345677888999


Q ss_pred             EeCCCcccccccChhh----hc--cCCCCEEeccCCcCccc----Cchhh-hCCCCCCeeeCCCCccee
Q 046668          217 LDLSCNSFTGRIPNSI----GA--LESILSIDFSANQLYGE----IPQSI-SSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       217 L~Ls~n~l~~~~~~~~----~~--l~~L~~L~L~~n~l~~~----~~~~l-~~l~~L~~L~l~~N~l~~  274 (381)
                      |+|++|.+++.....+    ..  .+.|++|++++|.+...    +...+ ...++|+.|++++|.+..
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            9999998875433322    22  35789999999988642    22333 256789999999998853

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.2e-15  Score=113.00  Aligned_cols=103  Identities=25%  Similarity=0.352  Sum_probs=89.6

Q ss_pred             CEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcEEEccc
Q 046668           27 LVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMILNLRS  106 (381)
Q Consensus        27 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  106 (381)
                      |+|+|++|+++ .++ .+.++++|++|++++|.++ .+|..|..+++|++|++++|++. .+|. +. .+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~-~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VA-NLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-cc-cccccCeEECCC
Confidence            68999999998 444 4889999999999999998 67888999999999999999998 6664 44 799999999999


Q ss_pred             ccccccCC-cCccCCCCCCEEeccCCcCCC
Q 046668          107 NKFRGVLP-NQLCGLTSLHVLDLADNHLSG  135 (381)
Q Consensus       107 n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  135 (381)
                      |.++.... ..+..+++|++|++++|+++.
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            99985432 568889999999999999873

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-15  Score=140.62  Aligned_cols=88  Identities=17%  Similarity=0.159  Sum_probs=60.8

Q ss_pred             cccccEEEccCCcccccCchh----hhccccCcEEeCCCccccccc----Chhhh-ccCCCCEEeccCCcCccc----Cc
Q 046668          187 LKLMRLIDLSKNKFSGEIPSE----IMNLRALVSLDLSCNSFTGRI----PNSIG-ALESILSIDFSANQLYGE----IP  253 (381)
Q Consensus       187 ~~~L~~L~L~~n~~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~L~~n~l~~~----~~  253 (381)
                      ...|+.++++++.++......    +...++|++|+|++|.+.+..    +..+. ..+.|++|+|++|.++..    +.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            346888888888877554333    345568888999888886432    22232 356788899998888742    34


Q ss_pred             hhhhCCCCCCeeeCCCCccee
Q 046668          254 QSISSLTFLSRLKLSNNNLSG  274 (381)
Q Consensus       254 ~~l~~l~~L~~L~l~~N~l~~  274 (381)
                      +.+..+++|++|++++|+++.
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhcCCCCCEEECCCCcCCH
Confidence            456677888899998888754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=1.8e-14  Score=128.32  Aligned_cols=242  Identities=17%  Similarity=0.169  Sum_probs=155.6

Q ss_pred             CCccCCCCCCCCEEEccCCcccee----CCccccCCCCCCEEeCcCCcCcc---cCChhH------HhcCCCCcEEEccc
Q 046668           40 IPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLVMLDIGENEFVG---NVPTWI------GIRFSSLMILNLRS  106 (381)
Q Consensus        40 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~------~~~l~~L~~L~L~~  106 (381)
                      +...+.....|++|+|++|.+...    +...+...++|+.++++++....   ..+..+      ...+++|++|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344566688999999999987532    33456788999999999876531   112111      11468899999999


Q ss_pred             cccccc----CCcCccCCCCCCEEeccCCcCCCCcCccc-------------ccccccccccccCCccccCCCCCCCccc
Q 046668          107 NKFRGV----LPNQLCGLTSLHVLDLADNHLSGSIPKCI-------------SNISSMVTANFSIGTDVQYPSVSTGKYV  169 (381)
Q Consensus       107 n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------~~l~~L~~l~~~~~~~~~~~~~~~~~~~  169 (381)
                      |.+...    +...+...++|++|++++|.+.......+             ...+.++.+.++.+....      ..  
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~------~~--  174 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN------GS--  174 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG------GG--
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc------cc--
Confidence            988743    22345567899999999998753211111             123344444443332110      00  


Q ss_pred             cceEEEEeccccchhhhcccccEEEccCCccccc-----CchhhhccccCcEEeCCCcccccc----cChhhhccCCCCE
Q 046668          170 EDALLVLKGKAVEYNTILKLMRLIDLSKNKFSGE-----IPSEIMNLRALVSLDLSCNSFTGR----IPNSIGALESILS  240 (381)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~  240 (381)
                             .......+...+.++.|++++|.+...     +...+..+++|+.|++++|.++..    +...+...+.|++
T Consensus       175 -------~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         175 -------MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             -------HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             -------cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence                   001122344577899999999998643     233467789999999999998643    3345678899999


Q ss_pred             EeccCCcCcccCc----hhhhC--CCCCCeeeCCCCcceecC----CCC--CCCCccCCCcccCCCCC
Q 046668          241 IDFSANQLYGEIP----QSISS--LTFLSRLKLSNNNLSGKI----PLS--TQLQSFDPSSFTGNRLC  296 (381)
Q Consensus       241 L~L~~n~l~~~~~----~~l~~--l~~L~~L~l~~N~l~~~~----~~~--~~l~~l~~~~~~~n~l~  296 (381)
                      |++++|.+.+.-.    +.+..  .+.|++|++++|++...-    ...  ...+.++.+++++|.+.
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            9999999875422    23333  457999999999885420    000  12345677778888654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1e-14  Score=134.79  Aligned_cols=275  Identities=17%  Similarity=0.135  Sum_probs=160.6

Q ss_pred             CccEEEcCCCcccc----cCCccccCCCCCCEEECcCCcCccc----CCccCC-CCCCCCEEEccCCcccee----CCcc
Q 046668            1 GIRILKLGENHFSG----EIPDCWMNWLDLLVLNLGNNNFTGN----IPISLG-MLSSLQSLNLRKNSLSGQ----IPAS   67 (381)
Q Consensus         1 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~L~~n~l~~~----~~~~   67 (381)
                      ++|+|+|++|+++.    .+..++..+++|++|+|++|.++..    +...+. ...+|++|++++|.+++.    ++.+
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            36777777777653    2334456677777777777776521    222232 234677777777776532    3445


Q ss_pred             ccCCCCCCEEeCcCCcCccc------------------------------------------------------------
Q 046668           68 FQNCTKLVMLDIGENEFVGN------------------------------------------------------------   87 (381)
Q Consensus        68 ~~~l~~L~~L~L~~n~l~~~------------------------------------------------------------   87 (381)
                      +..+++|++|++++|.+...                                                            
T Consensus       108 l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~  187 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  187 (460)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             hhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence            66677777777777654210                                                            


Q ss_pred             ----------------------C-Ch------hHHhcCCCCcEEEcccccccc-----cCCcCccCCCCCCEEeccCCcC
Q 046668           88 ----------------------V-PT------WIGIRFSSLMILNLRSNKFRG-----VLPNQLCGLTSLHVLDLADNHL  133 (381)
Q Consensus        88 ----------------------~-~~------~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l  133 (381)
                                            + ..      ........++.+++.+|.+..     ...........++.+++++|.+
T Consensus       188 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i  267 (460)
T d1z7xw1         188 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  267 (460)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccc
Confidence                                  0 00      011135678889998887642     1223344567888999998877


Q ss_pred             CCC----cCcccccccccccccccCCccccC-----CCCCCCccccceEEEEec-----cccc----hhhhcccccEEEc
Q 046668          134 SGS----IPKCISNISSMVTANFSIGTDVQY-----PSVSTGKYVEDALLVLKG-----KAVE----YNTILKLMRLIDL  195 (381)
Q Consensus       134 ~~~----~~~~~~~l~~L~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~L~~L~L  195 (381)
                      ...    ....+...+.+..++++.+.....     ...............+..     ....    .....+.|+.|+|
T Consensus       268 ~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~L  347 (460)
T d1z7xw1         268 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI  347 (460)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhhe
Confidence            532    122334455666666655543210     000000000111111111     1111    2234568999999


Q ss_pred             cCCcccccC----chhhh-ccccCcEEeCCCcccccc----cChhhhccCCCCEEeccCCcCcccCch----hhh-CCCC
Q 046668          196 SKNKFSGEI----PSEIM-NLRALVSLDLSCNSFTGR----IPNSIGALESILSIDFSANQLYGEIPQ----SIS-SLTF  261 (381)
Q Consensus       196 ~~n~~~~~~----~~~~~-~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~-~l~~  261 (381)
                      ++|++++..    +..+. ..+.|++|+|++|.+++.    +...+...++|++|++++|.++.....    .+. ....
T Consensus       348 s~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~  427 (460)
T d1z7xw1         348 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL  427 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCC
T ss_pred             eeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCc
Confidence            999987542    23333 457799999999999853    344566779999999999999753222    232 3347


Q ss_pred             CCeeeCCCCcceec
Q 046668          262 LSRLKLSNNNLSGK  275 (381)
Q Consensus       262 L~~L~l~~N~l~~~  275 (381)
                      |+.|++.+|.+...
T Consensus       428 L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         428 LEQLVLYDIYWSEE  441 (460)
T ss_dssp             CCEEECTTCCCCHH
T ss_pred             cCEEECCCCCCCHH
Confidence            99999999988753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.1e-13  Score=105.46  Aligned_cols=109  Identities=19%  Similarity=0.041  Sum_probs=69.4

Q ss_pred             CCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCC-ccceeCCccccCCCCCCEEeCcCCcCcccCChhHHhcCCCCcE
Q 046668           23 WLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKN-SLSGQIPASFQNCTKLVMLDIGENEFVGNVPTWIGIRFSSLMI  101 (381)
Q Consensus        23 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  101 (381)
                      +...+.++.+++.+. ..|..+..+++|++|++++| .++.+.+++|.++++|+.|++++|++. .++...+..+++|++
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccccccc
Confidence            334455666666665 44556666777777777654 466555666777777777777777776 555455546777777


Q ss_pred             EEcccccccccCCcCccCCCCCCEEeccCCcCC
Q 046668          102 LNLRSNKFRGVLPNQLCGLTSLHVLDLADNHLS  134 (381)
Q Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  134 (381)
                      |+|++|+++...+..|.. .+|++|++++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            777777777443344433 35777777777764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=1e-15  Score=125.01  Aligned_cols=142  Identities=20%  Similarity=0.212  Sum_probs=108.6

Q ss_pred             cEEEcCCC--cccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCc
Q 046668            3 RILKLGEN--HFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIG   80 (381)
Q Consensus         3 ~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   80 (381)
                      +.+++.+.  .++ .++..+..+++|++|+|++|.|+.+ + .|.++++|++|++++|.++ .+|..+..+++|++|+++
T Consensus        26 ~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          26 EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS  101 (198)
T ss_dssp             SCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECS
T ss_pred             ceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccc
Confidence            34555543  233 4556788999999999999999854 3 5888999999999999998 566666667889999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCC-cCccCCCCCCEEeccCCcCCCCcCcc----------ccccccccc
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-NQLCGLTSLHVLDLADNHLSGSIPKC----------ISNISSMVT  149 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~  149 (381)
                      +|++. .++ .+. .+++|++|++++|.++.... ..+..+++|++|++++|++....+..          +..+++|+.
T Consensus       102 ~N~i~-~l~-~~~-~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~  178 (198)
T d1m9la_         102 YNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK  178 (198)
T ss_dssp             EEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCE
T ss_pred             ccccc-ccc-ccc-ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCE
Confidence            99997 454 344 78999999999999984422 46889999999999999886433321          456777777


Q ss_pred             cc
Q 046668          150 AN  151 (381)
Q Consensus       150 l~  151 (381)
                      |+
T Consensus       179 LD  180 (198)
T d1m9la_         179 LD  180 (198)
T ss_dssp             ES
T ss_pred             eC
Confidence            65

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=1.7e-14  Score=117.54  Aligned_cols=76  Identities=24%  Similarity=0.300  Sum_probs=44.7

Q ss_pred             cccEEEccCCcccccCchhhhccccCcEEeCCCcccccccC-hhhhccCCCCEEeccCCcCcccCch----------hhh
Q 046668          189 LMRLIDLSKNKFSGEIPSEIMNLRALVSLDLSCNSFTGRIP-NSIGALESILSIDFSANQLYGEIPQ----------SIS  257 (381)
Q Consensus       189 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~l~  257 (381)
                      .|+.|++++|+++..  ..+..+++|+.|++++|.+++... ..+..+++|+.|++++|++....+.          .+.
T Consensus        94 ~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_          94 TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             ccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence            456666666666532  235666677777777777663211 3456667777777777766533222          145


Q ss_pred             CCCCCCeee
Q 046668          258 SLTFLSRLK  266 (381)
Q Consensus       258 ~l~~L~~L~  266 (381)
                      .+|+|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            677777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.3e-12  Score=100.46  Aligned_cols=105  Identities=19%  Similarity=0.106  Sum_probs=92.5

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCC-cCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcC
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNN-NFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGE   81 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   81 (381)
                      +.++.+++.+. ..|..+.++++|++|++++| .++.+.+++|.++++|++|++++|.++.+.+.+|.++++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            45778888877 56778889999999999866 58888888999999999999999999988899999999999999999


Q ss_pred             CcCcccCChhHHhcCCCCcEEEccccccc
Q 046668           82 NEFVGNVPTWIGIRFSSLMILNLRSNKFR  110 (381)
Q Consensus        82 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  110 (381)
                      |++. .+|...+ ...+|++|+|++|.+.
T Consensus        90 N~l~-~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALE-SLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCS-CCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             CCCc-ccChhhh-ccccccccccCCCccc
Confidence            9998 8888777 5568999999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.5e-10  Score=89.27  Aligned_cols=121  Identities=19%  Similarity=0.151  Sum_probs=71.3

Q ss_pred             CCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeCCccccCCCCCCEEeCcCCcCcccCC--hhHHhcCCCCcEE
Q 046668           25 DLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQIPASFQNCTKLVMLDIGENEFVGNVP--TWIGIRFSSLMIL  102 (381)
Q Consensus        25 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L  102 (381)
                      ..+.|++++....    ..+..+..+..++...+... .++..+.++++|++|+|++|+++ .++  ...+..+++|+.|
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L   96 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKIL   96 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCccccc
Confidence            4555666655432    12333444444444444333 44455567788888888888876 333  2233367888888


Q ss_pred             EcccccccccCCcCccCCCCCCEEeccCCcCCCCcCc-------cccccccccccc
Q 046668          103 NLRSNKFRGVLPNQLCGLTSLHVLDLADNHLSGSIPK-------CISNISSMVTAN  151 (381)
Q Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~l~  151 (381)
                      ++++|.++...+-.+....+|++|++++|++......       .+..+++|+.|+
T Consensus        97 ~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          97 NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            8888888754332333445678888888887654332       245566776664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.6e-09  Score=82.44  Aligned_cols=119  Identities=22%  Similarity=0.123  Sum_probs=81.1

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEccCCccceeC--CccccCCCCCCEEeCc
Q 046668            3 RILKLGENHFSGEIPDCWMNWLDLLVLNLGNNNFTGNIPISLGMLSSLQSLNLRKNSLSGQI--PASFQNCTKLVMLDIG   80 (381)
Q Consensus         3 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~   80 (381)
                      +.|++++....    ..+..+..+..++..++... .++..+..+++|++|+|++|.++...  +..+..+++|+.|+++
T Consensus        25 ~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls   99 (162)
T d1koha1          25 QALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLS   99 (162)
T ss_dssp             CCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCT
T ss_pred             CeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccc
Confidence            34555554322    12334444444445444333 34445567899999999999998543  4567889999999999


Q ss_pred             CCcCcccCChhHHhcCCCCcEEEcccccccccCC-------cCccCCCCCCEEe
Q 046668           81 ENEFVGNVPTWIGIRFSSLMILNLRSNKFRGVLP-------NQLCGLTSLHVLD  127 (381)
Q Consensus        81 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~  127 (381)
                      +|.+. .++.........|+.|++++|.+.....       ..+..+|+|+.||
T Consensus       100 ~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         100 GNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            99998 5665333356689999999999975443       2366789999986

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=1.4e-06  Score=67.76  Aligned_cols=112  Identities=11%  Similarity=0.085  Sum_probs=68.4

Q ss_pred             cCCCCCCEEECcCC-cCccc----CCccCCCCCCCCEEEccCCcccee----CCccccCCCCCCEEeCcCCcCcccCChh
Q 046668           21 MNWLDLLVLNLGNN-NFTGN----IPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLVMLDIGENEFVGNVPTW   91 (381)
Q Consensus        21 ~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~   91 (381)
                      .+.++|++|+|+++ .++..    +..++...++|++|+|++|.+...    +...+...+.|++|+|++|.+...-...
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34678888888864 45422    334566677888888888877532    2234556678888888888776332222


Q ss_pred             HHh---cCCCCcEEEccccccccc-------CCcCccCCCCCCEEeccCCc
Q 046668           92 IGI---RFSSLMILNLRSNKFRGV-------LPNQLCGLTSLHVLDLADNH  132 (381)
Q Consensus        92 ~~~---~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~  132 (381)
                      ++.   ..++|++|++++|.+...       +...+..-+.|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            222   235688888877654411       22334445677777776554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=1.1e-05  Score=62.49  Aligned_cols=86  Identities=17%  Similarity=0.108  Sum_probs=55.0

Q ss_pred             cccccEEEccCCcccccC----chhhhccccCcEEeCCCcccccccC----hhhhccCCCCEEeccCCcCccc-------
Q 046668          187 LKLMRLIDLSKNKFSGEI----PSEIMNLRALVSLDLSCNSFTGRIP----NSIGALESILSIDFSANQLYGE-------  251 (381)
Q Consensus       187 ~~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------  251 (381)
                      .+.|+.|++++|.+....    ...+...+.|++|+|++|.+.....    .++...++|++|++++|.+...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            345777777777775322    2334556778888888887775322    2345567788888887765421       


Q ss_pred             CchhhhCCCCCCeeeCCCCcc
Q 046668          252 IPQSISSLTFLSRLKLSNNNL  272 (381)
Q Consensus       252 ~~~~l~~l~~L~~L~l~~N~l  272 (381)
                      +...+...++|+.|+++.+..
T Consensus       123 l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCccEeeCcCCCc
Confidence            344556677888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.51  E-value=4.8e-06  Score=64.47  Aligned_cols=115  Identities=17%  Similarity=0.093  Sum_probs=71.4

Q ss_pred             cccCCCCCCEEECcC-CcCcc----cCCccCCCCCCCCEEEccCCcccee----CCccccCCCCCCEEeCcCCcCcccCC
Q 046668           19 CWMNWLDLLVLNLGN-NNFTG----NIPISLGMLSSLQSLNLRKNSLSGQ----IPASFQNCTKLVMLDIGENEFVGNVP   89 (381)
Q Consensus        19 ~~~~l~~L~~L~L~~-n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~   89 (381)
                      ...+.+.|++|+|++ +.++.    .+..++...++|++|++++|.+...    +...+...+.++.+++++|.+.....
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            345678888898887 44642    2334566778888888888877532    23445667888888888887753322


Q ss_pred             hhHH---hcCCCCcEEEcc--cccccc----cCCcCccCCCCCCEEeccCCcC
Q 046668           90 TWIG---IRFSSLMILNLR--SNKFRG----VLPNQLCGLTSLHVLDLADNHL  133 (381)
Q Consensus        90 ~~~~---~~l~~L~~L~L~--~n~l~~----~~~~~~~~l~~L~~L~L~~n~l  133 (381)
                      ..+.   ...++|+.++|.  .|.+..    .+...+...++|++|+++.+..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2222   145667765553  455542    2234455667888888776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.33  E-value=2.9e-05  Score=59.88  Aligned_cols=108  Identities=15%  Similarity=0.204  Sum_probs=76.0

Q ss_pred             CccEEEcCCC-cccc----cCCccccCCCCCCEEECcCCcCccc----CCccCCCCCCCCEEEccCCcccee----CCcc
Q 046668            1 GIRILKLGEN-HFSG----EIPDCWMNWLDLLVLNLGNNNFTGN----IPISLGMLSSLQSLNLRKNSLSGQ----IPAS   67 (381)
Q Consensus         1 ~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~   67 (381)
                      +|++|+++++ .++.    .+..++...++|++|+|++|.++..    +...+...+.++.+++++|.+...    +..+
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            4789999984 4643    2334556789999999999998633    334456678999999999987532    3356


Q ss_pred             ccCCCCCCEEeC--cCCcCccc----CChhHHhcCCCCcEEEcccccc
Q 046668           68 FQNCTKLVMLDI--GENEFVGN----VPTWIGIRFSSLMILNLRSNKF  109 (381)
Q Consensus        68 ~~~l~~L~~L~L--~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l  109 (381)
                      +...++|+.++|  ++|.+...    +...+. ..++|++|+++.+..
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~-~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSH
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHH-hCCCcCEEeCcCCCC
Confidence            778899998666  45666432    223333 678999999976654