Citrus Sinensis ID: 046676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
Protein Sequence
MDKEEQNYPKSPPNTAVITSSVPEATPLSMETIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAVPGGFTKAPEQMGEGASSSGIKDPHFKEKNDLMKENIHDISSPGIECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGGSSIDLWSADEPPFVDPESQASPKEDDRPKDMDP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEccccccEEEcccHHHHHHHHcccccccccHHHHHHHccccccccccccEEEEccccccccHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEccHHHHccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdkeeqnypksppntavitssvpeatplsmetiafpTTVEELEAfssfattpaadvpqpldclhgnpippflaktfdlvddtsldpiiswgstgesfvvwdplefsrlilprnfkhnnFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIrrrkspqsqqigtyigpfseaeksgvqGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKrkfvkhqphelgksdssvegqivtyrpdwgnltipnvvpeshhvpverspdylldgmvgigsgredmpfqfenvasvdlavsdelavpggftkapeqmgegasssgikdphfkeknDLMKENihdisspgieciatqediwnlgfdatagmssssnellgnlstsdvpdlgmsgglsdiwdlsslqaaggssidlwsadeppfvdpesqaspkeddrpkdmdp
Flexible Loop (DISEMBL)
mdkeeqnypksppntaviTSSVPEATPLSMETIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLlknirrrkspqsqqigtyigpfseaeksgVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKeqgeidssrmkrkfvkhqphelgksdssvegQIVTYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAVPGGftkapeqmgegasssgikdpHFKEKNDLMKENIHDISSPGIECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGGSSIDLWSADEPPFvdpesqaspkeddrpkdmdp
Low Complexity Region (SEG)
MDKEEQNYPKSPPNTAVITSSVPEATPLSMETIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAVPGGFTKAPEQMGEGASSSGIKDPHFKEKNDLMKENIHDISSPGIECIATQEDIWNLGFDATAGMssssnellgnlstsDVPDLGMSGGLSDIWDLSSLQAAGGSSIDLWSADEPPFVDPESQASPKEDDRPKDMDP
Disordered region (IsUnstruct)
*******************************TIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLL*****************************************************************************MVSFLAKLLQNPAFLA*************************************QIVTYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELA***************************************ISSPGIECIATQEDIWNLGFDAT***************************LSDIWDLSSL**************************************
Disordered Region (DISOPRED)
**********************************************************************FLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLK*************************************************HQQHRGTASHMEAINQ******QRQKQMVSFLAKLL**********************************************************************************************************************************************************************************************************IWDL*****************************************
Disordered Region (DISEMBL)
************PNTAVITSSVPEATPLSMETIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNI*********QIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLK***********RMKRKFV************SVEGQIVTYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAVPGGFTKA************IKDPHFKEKNDLMKENIHDISSPGIECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGGSSIDLWSADEPPF********************
Disordered Region (DISPRO)
*********************************************************QP*D*LHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRR********************SGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQG*****************************************I********************************************************************************************SSPGIECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGGSSIDLWSAD************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKEEQNYPKSPPNTAVITSSVPEATPLSMETIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDxxxxxxxxxxxxxxxxxxxxxHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFxxxxxxxxxxxxxxxxxxxxxFVKHQPHELGKSDSSVEGQIVTYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAVPGGFTKAPEQMGEGASSSGIKDPHFKEKNDLMKENIHDISSPGIECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGGSSIDLWSADEPPFVDPESQASPKEDDRPKDMDP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	487	2.2.26 [Sep-21-2011]
Q8GYY1	412	Heat stress transcription	yes	no	0.488	0.577	0.626	2e-85
Q6H6Q7	498	Heat stress transcription	yes	no	0.743	0.726	0.422	7e-69
Q6VBB2	372	Heat stress transcription	no	no	0.429	0.561	0.497	3e-59
Q6F388	357	Heat stress transcription	no	no	0.433	0.591	0.483	5e-59
Q9LQM7	485	Heat stress transcription	no	no	0.496	0.498	0.442	1e-57
P41151	495	Heat stress transcription	no	no	0.498	0.490	0.430	2e-57
Q84T61	506	Heat stress transcription	no	no	0.455	0.438	0.487	6e-57
O81821	481	Heat stress transcription	no	no	0.464	0.469	0.464	2e-55
Q9LUH8	406	Heat stress transcription	no	no	0.478	0.573	0.447	2e-55
Q338B0	358	Heat stress transcription	no	no	0.402	0.547	0.509	4e-55

>sp|Q8GYY1|HSFA3_ARATH Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2

 Score =  316 bits (810), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/249 (62%), Positives = 188/249 (75%), Gaps = 11/249 (4%)

Query: 56  VPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFK 115
           +P PLD L GNPIPPFL+KTFDLVDD +LDP+ISWG TG SFVVWDPLEF+R+ILPRNFK
Sbjct: 41  LPMPLDILQGNPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFK 100

Query: 116 HNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPF 175
           HNNFSSFVRQLNTYGFRKIDTD+WEFANEAF RG++HLLKNI RR+SPQS Q        
Sbjct: 101 HNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQ 160

Query: 176 SEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSF 235
           S+   + V G+IE+LRKER  LM+E+VEL QQ RGTA H++ +NQR+ AAEQRQKQ++SF
Sbjct: 161 SQGSPTEVGGEIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSF 220

Query: 236 LAKLLQNPAFLARLKQ---KKEQGEIDSSRMKRKFVKH--QPHELGKSDSSVEGQIVTYR 290
           LAKL QN  FL RLK    K++ G +   + ++KF+KH  QP      DS   G++V Y 
Sbjct: 221 LAKLFQNRGFLERLKNFKGKEKGGALGLEKARKKFIKHHQQPQ-----DSPTGGEVVKYE 275

Query: 291 P-DWGNLTI 298
             DW  L +
Sbjct: 276 ADDWERLLM 284

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6H6Q7|HSFA3_ORYSJ Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1

 Score =  261 bits (668), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 219/379 (57%), Gaps = 17/379 (4%)

Query: 57  PQPLDCLHGNP-IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFK 115
           P+PL+ L   P +PPFL+KT+DLV +  LD +ISWG  G SFVVWDP  F+R +LP +FK
Sbjct: 53  PRPLEALLQGPQLPPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFK 112

Query: 116 HNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPF 175
           HNNFSSFVRQLNTYGFRK+  DRWEFA+E F R  +HLLK I RR+S  +QQ G   G  
Sbjct: 113 HNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQSGLQPGSS 172

Query: 176 SEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSF 235
            E   SG+  ++  LR+E+  L+QEV  L Q+H  T   M  +NQR+ +AE RQKQMVSF
Sbjct: 173 GE---SGLDPELNTLRREKSALLQEVTRLKQEHLQTIEQMSTLNQRLESAEDRQKQMVSF 229

Query: 236 LAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRPDWGN 295
           LAKLLQNP FL +LK  ++Q EIDS+R+KRKF+KH PH  G  DS   G+  +      N
Sbjct: 230 LAKLLQNPTFLRQLKMHRQQKEIDSTRVKRKFLKHVPH--GNIDS---GESSSQHTGESN 284

Query: 296 LTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDEL-AVPGG 354
           L   +  P S  +P   S    L   + +  G  ++    EN+    +   D++ A+  G
Sbjct: 285 L---DFSPTSLDLPATHSDILDLQNFL-LEDGDLNLAMLPENIGLDGIEAPDDIGALVQG 340

Query: 355 F-TKAPEQMGEGASSSGIKDPHFKEKND--LMKENIHDISSPGIECIATQEDIWNLGFDA 411
           F T+   ++G G     I         D  + +    ++ SPG++  +++ D      D 
Sbjct: 341 FDTQEELELGSGVELLEIPPASGPRGQDPTIGRSKGKNVLSPGLDATSSEADCLGSFSDN 400

Query: 412 TAGMSSSSNELLGNLSTSD 430
              +S S  +  G L  +D
Sbjct: 401 MGMLSDSMLQTAGKLMDAD 419

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score =  229 bits (585), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/215 (49%), Positives = 150/215 (69%), Gaps = 6/215 (2%)

Query: 57  PQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKH 116
           P+P++ LH    PPFL KT+D+VDD   D  +SW +T  SFVVWDP  F+ ++LPR FKH
Sbjct: 39  PRPMEGLHDAGPPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKH 98

Query: 117 NNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSP-QSQQIGTYIGPF 175
           NNFSSFVRQLNTYGFRK+D DRWEFANE F RG+RHLLKNI+RRK P  +      +GP+
Sbjct: 99  NNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLGPY 158

Query: 176 SEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSF 235
            E    G   +I++L++++ +LM EVV+L Q+ + T ++++A+  R+   EQRQ+QM++F
Sbjct: 159 LEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAF 218

Query: 236 LAKLLQNPAFLARLKQKKE-----QGEIDSSRMKR 265
           LA++++NP FL +L  + E     Q  I   R +R
Sbjct: 219 LARVMKNPEFLKQLMSQNEMRKELQDAISKKRRRR 253

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  229 bits (583), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/215 (48%), Positives = 152/215 (70%), Gaps = 4/215 (1%)

Query: 57  PQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKH 116
           P+P+D L     PPFL KT+D+VDD + D ++SW +T  SFVVWDP  F  ++LPR FKH
Sbjct: 25  PRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKH 84

Query: 117 NNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFS 176
           NNFSSFVRQLNTYGFRK+D D+WEFANE F RG++HLLK+I+RRK P S      +G F 
Sbjct: 85  NNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFL 144

Query: 177 EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFL 236
           E    G +G+I+QL++++ +LM EVV+L Q+ + T S ++A+ Q++   EQ+Q+ M++FL
Sbjct: 145 EVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFL 204

Query: 237 AKLLQNPAFLARL----KQKKEQGEIDSSRMKRKF 267
           ++++ NP F+ +L    + +KE  E  S + +R+ 
Sbjct: 205 SRVMHNPEFIRQLFSQSEMRKELEEFVSKKRRRRI 239

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  224 bits (570), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/262 (44%), Positives = 168/262 (64%), Gaps = 20/262 (7%)

Query: 47  SFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFS 106
           S  T P+   PQP   L  N  PPFL+KT+D+VDD + D I+SW +   SF+VW P EF+
Sbjct: 15  SMETKPSPQ-PQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFA 73

Query: 107 RLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQ 166
           R +LP+NFKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RG++HLL++I RRK    Q
Sbjct: 74  RDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQ 133

Query: 167 QIG-----------TYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHM 215
             G           + +    E  K G++ ++E+L++++ +LMQE+V L QQ + T + +
Sbjct: 134 GQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQL 193

Query: 216 EAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARL-----KQKKEQGEIDSSRMKRKFVKH 270
           + + QR+   E RQ+Q++SFLAK +Q+P FL++      +Q +    I  +  KR+F + 
Sbjct: 194 QTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRD 253

Query: 271 QPHELGKSDSSV-EGQIVTYRP 291
               +  +DS+  +GQIV Y+P
Sbjct: 254 --GIVRNNDSATPDGQIVKYQP 273

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/267 (43%), Positives = 166/267 (62%), Gaps = 24/267 (8%)

Query: 49  ATTPAADVPQPLDCLHGNPIPP-FLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSR 107
            T P    P P   L+ N +PP FL+KT+D+V+D + D I+SW  T  SF+VWDP EFSR
Sbjct: 30  VTAPPPRNPHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSR 89

Query: 108 LILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQ- 166
            +LP+ FKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RG++HLLK I RRKS Q   
Sbjct: 90  DLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHG 149

Query: 167 ---------------QIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGT 211
                               +    E  K G++ ++EQL++++ +LMQE+V+L QQ + T
Sbjct: 150 SSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTT 209

Query: 212 ASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRM-KRKFVKH 270
            + ++ + + +   EQRQ+Q++SFLAK +QNP FL++  QK+    +  +   K++ ++ 
Sbjct: 210 DNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLRE 269

Query: 271 QPHELGKSDS------SVEGQIVTYRP 291
                 +S+S      + +GQIV Y+P
Sbjct: 270 DSTAATESNSHSHSLEASDGQIVKYQP 296

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  222 bits (565), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 113/232 (48%), Positives = 155/232 (66%), Gaps = 10/232 (4%)

Query: 69  PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
           PPFL KT+++VDD + D ++SWG    SFVVW+  EF+R +LP+ FKH+NFSSFVRQLNT
Sbjct: 36  PPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNT 95

Query: 129 YGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRK----SPQSQQIGTYIGPF---SEAEKS 181
           YGFRK+D DRWEFANE F RG++HLLK I RRK    + Q QQ      P     E  K 
Sbjct: 96  YGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKF 155

Query: 182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQ 241
           G++ +IE L++++ +LMQE+V L QQ + T   ++ + +R+   EQRQ+QM+SFLAK + 
Sbjct: 156 GMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMH 215

Query: 242 NPAFLARLKQKKEQG--EIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRP 291
           +P FLA+  Q+ E     I +S  KR+  K Q   L    +S++GQIV Y+P
Sbjct: 216 SPGFLAQFVQQNENSRRRIVASNKKRRLPK-QDGSLDSESASLDGQIVKYQP 266

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/237 (46%), Positives = 157/237 (66%), Gaps = 11/237 (4%)

Query: 66  NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQ 125
           N +PPFL+KT+D+VDD   + ++SW S   SFVVW   EFS+++LP+ FKHNNFSSFVRQ
Sbjct: 23  NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query: 126 LNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRK-------SPQSQQIGTYIGPFSEA 178
           LNTYGFRK+D DRWEFANE F RGR+ LLK+I RRK         Q+Q   + +G   E 
Sbjct: 83  LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query: 179 EKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAK 238
            K G++ ++E+L++++ +LMQE+V L QQ + T + ++ + Q++   EQRQ+QM+SFLAK
Sbjct: 143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query: 239 LLQNPAFLARLKQKKEQG---EIDSSRMKRKF-VKHQPHELGKSDSSVEGQIVTYRP 291
            +Q+P FL +L Q+       +I  S  KR+  V  Q +      + +  QIV Y+P
Sbjct: 203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNRQIVRYQP 259

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 161/246 (65%), Gaps = 13/246 (5%)

Query: 57  PQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKH 116
           PQPL+ LH +  PPFL KT+DLV+D+  + ++SW  +  SF+VWDP  FS  +LPR FKH
Sbjct: 48  PQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKH 107

Query: 117 NNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQ--------I 168
           NNFSSFVRQLNTYGFRK++ DRWEFANE F RG++HLLKNIRRRK+  +           
Sbjct: 108 NNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSE 167

Query: 169 GTYIGPFS-EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227
              +  F  E  + G+ G+++ LR+++ +LM E+V L QQ + T  ++  I +++   E 
Sbjct: 168 QQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTES 227

Query: 228 RQKQMVSFLAKLLQNPAFLARL-KQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQI 286
           +QKQM+SFLA+ +QNP F+ +L +QK+++ EI+ +  K+   + +P + GK +    G  
Sbjct: 228 KQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKK---RQRPIDQGKRNVEDYGDE 284

Query: 287 VTYRPD 292
             Y  D
Sbjct: 285 SGYGND 290

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2

 Score =  216 bits (549), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 147/206 (71%), Gaps = 10/206 (4%)

Query: 56  VPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFK 115
            P+P++ LH    PPFL KT+DLV+D + D ++SW   G SFVVWDP  F+ L+LPR FK
Sbjct: 28  APRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFK 87

Query: 116 HNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSP------QSQQIG 169
           HNNFSSFVRQLNTYGFRK+D DRWEFANE F RG+RHLLK I+RRK P      Q Q + 
Sbjct: 88  HNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLT 147

Query: 170 TYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQ 229
           + +    E  + G + +I++L++++ +L+ EVV+L Q+ + T  H++A+  R+ AAEQ+Q
Sbjct: 148 SCL----EVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQ 203

Query: 230 KQMVSFLAKLLQNPAFLARLKQKKEQ 255
            QM+ FLA+ ++NP F  +L Q+KE+
Sbjct: 204 VQMMGFLARAMRNPEFFQQLAQQKEK 229

Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
255575369	521	DNA binding protein, putative [Ricinus c	0.887	0.829	0.577	1e-135
359481977	556	PREDICTED: heat stress transcription fac	0.860	0.753	0.571	1e-134
297740065	493	unnamed protein product [Vitis vinifera]	0.815	0.805	0.568	1e-128
147786903	505	hypothetical protein VITISV_018209 [Viti	0.784	0.756	0.516	1e-119
356546051	454	PREDICTED: heat stress transcription fac	0.868	0.931	0.513	1e-115
356537039	470	PREDICTED: heat stress transcription fac	0.860	0.891	0.498	1e-115
449500984	564	PREDICTED: heat stress transcription fac	0.880	0.760	0.533	1e-112
449440197	564	PREDICTED: heat stress transcription fac	0.880	0.760	0.533	1e-112
350539978	506	heat stress transcription factor A3 [Sol	0.829	0.798	0.519	1e-104
8347238	508	heat stress transcription factor A3 [Sol	0.829	0.795	0.521	1e-102

>gi|255575369|ref|XP_002528587.1| DNA binding protein, putative [Ricinus communis] gi|223531983|gb|EEF33795.1| DNA binding protein, putative [Ricinus communis]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/457 (57%), Positives = 322/457 (70%), Gaps = 25/457 (5%)

Query: 53  AADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR 112
           AA+VPQPL  LH NPIPPFL+KT+DLV+D  LDPIISWGSTGESFVVWDP+EFSR++LPR
Sbjct: 66  AAEVPQPLANLHENPIPPFLSKTYDLVNDRILDPIISWGSTGESFVVWDPVEFSRVVLPR 125

Query: 113 NFKHNNFSSFVRQLNTY----GFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQI 168
           NFKHNNFSSFVRQLNTY    GFRKID+D+WEFANEAF+RG+RHLLKNI+RRK  QSQQ+
Sbjct: 126 NFKHNNFSSFVRQLNTYVGIAGFRKIDSDKWEFANEAFRRGKRHLLKNIQRRKPLQSQQV 185

Query: 169 GTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQR 228
           G+Y GP +E   S ++ +IE LRK+R M+MQEVVEL QQ RG+  HM+ +N+R+ AAEQR
Sbjct: 186 GSYTGPPTETGLSELESEIEILRKQRSMMMQEVVELQQQQRGSVHHMKTVNRRLQAAEQR 245

Query: 229 QKQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVT 288
           QKQMVSFLAKL QNPAFLARL+Q KEQG I SSRM  K+VKHQ  E G+S+S +EGQ+V 
Sbjct: 246 QKQMVSFLAKLFQNPAFLARLRQNKEQGNIGSSRM--KYVKHQQLEPGQSESRLEGQVVK 303

Query: 289 YRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDE 348
           YRP+W ++ + ++VP+ +    ++SPDY L  M+  G     M F  ENV   ++A+ DE
Sbjct: 304 YRPEWKDVPLSSLVPDINPASFKQSPDYNLQDMLETGEEAVGMAFPIENVPLDEVAILDE 363

Query: 349 LAVPGGFTKAPEQMGEGASSSGIKDPHFKEKN------------------DLMKE-NIHD 389
           L V  G  + P Q GEGAS+   +DP FK KN                  DL+ E +  +
Sbjct: 364 LVVAQGCIQNPAQYGEGASNMRTEDPQFKGKNIMNPQQEVGPEYFIAFPEDLVAEKDFPE 423

Query: 390 ISSPGIECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSL 449
            SSP I+ I  QED+WN+ FD  A M SSS EL GNL   DVP+LG S G SDIW L SL
Sbjct: 424 FSSPAIDSIVKQEDVWNMEFDPQAYMPSSSQELWGNLVPYDVPELGSSAGFSDIWGLGSL 483

Query: 450 QAAGGSSIDLWSADEPPFVDPESQASPKEDDRPKDMD 486
           QAAG S I    ADE P    E  A   +DD  K++D
Sbjct: 484 QAAGSSGIHKRPADENPTAKLEGHADQLKDDSLKNID 520

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481977|ref|XP_002277338.2| PREDICTED: heat stress transcription factor A-3-like [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/453 (57%), Positives = 312/453 (68%), Gaps = 34/453 (7%)

Query: 56  VPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFK 115
            PQPLDCL  NPIPPFL+KTFD+VDD  LDPI+SWG TGESFVVWDP+EFSRL+LPRNFK
Sbjct: 106 APQPLDCLQDNPIPPFLSKTFDIVDDVLLDPIVSWGPTGESFVVWDPVEFSRLVLPRNFK 165

Query: 116 HNNFSSFVRQLNTY----GFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTY 171
           HNNFSSFVRQLNTY    GFRKID+D+WEFANE F RG+RHLLKNIRRRKSPQSQ  G+Y
Sbjct: 166 HNNFSSFVRQLNTYVGIAGFRKIDSDKWEFANEGFMRGKRHLLKNIRRRKSPQSQHTGSY 225

Query: 172 IGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQ 231
            GP SE   SG++ ++E+LRK++ +LMQEV+EL QQH GT   ME +N+RI AAE+RQK+
Sbjct: 226 AGPSSEIAMSGLESEVERLRKQKSLLMQEVIELQQQHSGTIHQMEVVNERIQAAEKRQKK 285

Query: 232 MVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRP 291
           MVSFLAKLLQNP FLARL  K +Q +I   RM RKFVKHQ  E GKSDSS+ GQIV YRP
Sbjct: 286 MVSFLAKLLQNPEFLARLLPKDDQKDIGVPRMMRKFVKHQKLEPGKSDSSMGGQIVKYRP 345

Query: 292 DWGNLTIPNVVPESHHVPVERSPDYLLDGMVG-IGSGREDMPFQFENVASVDLAVSDELA 350
              NL   ++ P S+    E+ P+  L  + G +  G E +PF    V+S +LA     A
Sbjct: 346 GSENLITSSLFPPSNPDSCEQFPNDCLQVIAGKLDLGMESVPFGTRKVSSDELA-----A 400

Query: 351 VPGGFTKAPEQMGEGASSSGIKDPHFKEKN------------------DLMKENIH-DIS 391
           V     +APEQ+ E  +S G     FK KN                  D  KE    +  
Sbjct: 401 VAHKLIEAPEQVREETASLGPVGLVFKGKNLVSSQPEGSTNYNLSFIDDSTKEKAFPEFL 460

Query: 392 SPGIECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQA 451
           SPGI+ I  Q DIW++GFD +A M+SS  EL GN++  DVPDLG++GG+SDIWDL SLQA
Sbjct: 461 SPGIDGIIKQADIWSMGFDDSADMTSSCGELWGNVTNYDVPDLGLTGGISDIWDLGSLQA 520

Query: 452 AGGSSIDLWSADEPPFVDPESQASPKEDDRPKD 484
           A G  ID W +DE  F +PE+QA     D+PKD
Sbjct: 521 AEGLGIDKWPSDESTFNEPENQA-----DQPKD 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740065|emb|CBI30247.3| unnamed protein product [Vitis vinifera]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/433 (56%), Positives = 298/433 (68%), Gaps = 36/433 (8%)

Query: 56  VPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFK 115
            PQPLDCL  NPIPPFL+KTFD+VDD  LDPI+SWG TGESFVVWDP+EFSRL+LPRNFK
Sbjct: 85  APQPLDCLQDNPIPPFLSKTFDIVDDVLLDPIVSWGPTGESFVVWDPVEFSRLVLPRNFK 144

Query: 116 HNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPF 175
           HNNFSSFVRQLNTYGFRKID+D+WEFANE F RG+RHLLKNIRRRKSPQSQ  G+Y GP 
Sbjct: 145 HNNFSSFVRQLNTYGFRKIDSDKWEFANEGFMRGKRHLLKNIRRRKSPQSQHTGSYAGPS 204

Query: 176 SEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSF 235
           SE   SG++ ++E+LRK++ +LMQEV+EL QQH GT   ME +N+RI AAE+RQK+MVSF
Sbjct: 205 SEIAMSGLESEVERLRKQKSLLMQEVIELQQQHSGTIHQMEVVNERIQAAEKRQKKMVSF 264

Query: 236 LAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRPDWGN 295
           LAKLLQNP FLARL  K +Q +I   RM RKFVKHQ  E GKSDSS+ GQIV YRP   N
Sbjct: 265 LAKLLQNPEFLARLLPKDDQKDIGVPRMMRKFVKHQKLEPGKSDSSMGGQIVKYRPGSEN 324

Query: 296 LT----IPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAV 351
           L      P   P+S H  +E +P+ + +    +G     + F+ +N+ S           
Sbjct: 325 LITSSLFPPSNPDSSHKLIE-APEQVREETASLGP--VGLVFKGKNLVS----------- 370

Query: 352 PGGFTKAPEQMGEGASSSGIKDPHFKEKNDLMKENIHDISSPGIECIATQEDIWNLGFDA 411
                  PE  G    +    D   KEK         +  SPGI+ I  Q DIW++GFD 
Sbjct: 371 -----SQPE--GSTNYNLSFIDDSTKEK------AFPEFLSPGIDGIIKQADIWSMGFDD 417

Query: 412 TAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGGSSIDLWSADEPPFVDPE 471
           +A M+SS  EL GN++  DVPDLG++GG+SDIWDL SLQAA G  ID W +DE  F +PE
Sbjct: 418 SADMTSSCGELWGNVTNYDVPDLGLTGGISDIWDLGSLQAAEGLGIDKWPSDESTFNEPE 477

Query: 472 SQASPKEDDRPKD 484
           +QA     D+PKD
Sbjct: 478 NQA-----DQPKD 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147786903|emb|CAN62315.1| hypothetical protein VITISV_018209 [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/459 (51%), Positives = 289/459 (62%), Gaps = 77/459 (16%)

Query: 71  FLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTY- 129
           FL+KTFD+VDD  LDPI+SWG TGESFVVWDP+EFSRL+LPRNFKHNNFSSFVRQLNTY 
Sbjct: 71  FLSKTFDIVDDVLLDPIVSWGPTGESFVVWDPVEFSRLVLPRNFKHNNFSSFVRQLNTYV 130

Query: 130 -------------------------------------------GFRKIDTDRWEFANEAF 146
                                                      GFRKID+D+WEFANE F
Sbjct: 131 GIAVTRPSKAAVLYAAEADLVVIKMRXPYPFECVLELEFHPLQGFRKIDSDKWEFANEGF 190

Query: 147 QRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQ 206
            RG+RHLLKNIRRRKSPQSQ  G+Y GP SE   SG++ ++E+LRK++ +LMQEV+EL Q
Sbjct: 191 MRGKRHLLKNIRRRKSPQSQHTGSYAGPSSEIAMSGLESEVERLRKQKSLLMQEVIELQQ 250

Query: 207 QHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRK 266
           QH GT   ME +N+RI AAE+RQ +MVSFLAKLLQNP FLARL  K +Q +I   RM RK
Sbjct: 251 QHSGTIHQMEVVNERIQAAEKRQXKMVSFLAKLLQNPEFLARLLPKDDQXDIGVPRMMRK 310

Query: 267 FVKHQPHELGKSDSSVEGQIVTYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVG-IG 325
           FVKHQ  E GKSDSS+ GQIV YRP   NL   ++ P S+    E+ P+  L  + G + 
Sbjct: 311 FVKHQXLEPGKSDSSMGGQIVKYRPGSENLITSSLFPPSNPDSCEQFPNDCLQVIAGKLD 370

Query: 326 SGREDMPFQFENVASVDLAVSDELAVPGGFTKAPEQMGEGASSSGIKDPHFKEKNDLMKE 385
            G E +PF    V+S +LA     AV     +APEQ                      ++
Sbjct: 371 LGMESVPFGTRKVSSDELA-----AVAHKLIEAPEQ----------------------EK 403

Query: 386 NIHDISSPGIECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWD 445
              +  SPGI+ I  Q DIW++GFD +A M+SS  EL GN++  DVPDLG++GG+SDIWD
Sbjct: 404 AFPEFLSPGIDGIIKQADIWSMGFDDSADMTSSCGELWGNVTNYDVPDLGLTGGISDIWD 463

Query: 446 LSSLQAAGGSSIDLWSADEPPFVDPESQASPKEDDRPKD 484
           L SLQAA G  ID W ADE  F +PE+QA     D+PKD
Sbjct: 464 LGSLQAAEGLGIDKWPADESTFNEPENQA-----DQPKD 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546051|ref|XP_003541445.1| PREDICTED: heat stress transcription factor A-3-like [Glycine max]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/460 (51%), Positives = 307/460 (66%), Gaps = 37/460 (8%)

Query: 54  ADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRN 113
           A+ P+PL+ L  NP+PPFL+KTFDLVDD +LDPIISWGSTG SFVVWDPLEF+R++LPR+
Sbjct: 6   ANSPKPLEILQMNPVPPFLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRH 65

Query: 114 FKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIG 173
           FKHNNFSSFVRQLNTYGFRKIDTD+WEF NEAFQRG++HLLKNI+RR+S QSQQ+G+YIG
Sbjct: 66  FKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSSQSQQVGSYIG 125

Query: 174 --PFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQ 231
               +EA +S V+ +IE+LRKER MLM+EVV+L Q+ R  A     +NQR+ + EQRQKQ
Sbjct: 126 IECSTEAGRSDVEIEIERLRKERTMLMEEVVDLKQEQRRMAHRAGEVNQRLQSTEQRQKQ 185

Query: 232 MVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRP 291
           MVSFL KL+QNPAFLARL+  +EQ EIDS R+ RKFVK   HE G +++  EGQIV Y+ 
Sbjct: 186 MVSFLVKLIQNPAFLARLRH-EEQKEIDSPRVVRKFVKQHQHETGTAETLQEGQIVRYQH 244

Query: 292 DWGNLTIPNVVPESHHVPVERSPDYLLDGMVG-IGSGREDMPFQFENVASVDLAVSDELA 350
           DW N+ + +  P+   V +E+SP YL  G+ G +  G ED+  Q EN+      VS++LA
Sbjct: 245 DWRNIGMSSETPKLSPVSIEQSPHYLSQGLAGEVSVGAEDLTAQIENI------VSNDLA 298

Query: 351 VPGGFTKAPEQM-GEGASSSGIKDPHFKEKNDL-------------------MKENIHDI 390
              G T + E M GEG SS G +DP FK K+ +                     ++  D 
Sbjct: 299 AVHGITVSQEIMIGEGLSSFGAEDPLFKGKSVMSPILEVPPEYFASFPEGLTKGKDFQDF 358

Query: 391 SSPGIECIATQEDIWNLGFDATAGMSSSSNELLGN-LSTSDVPDLGMSGGL--SDIWDLS 447
           S+ G E +   EDIW+ G + +   S S NEL  N ++  + P+ G++ G+  SDIWD+ 
Sbjct: 359 SALGTEGMIKLEDIWDSGLNVSGAASGSGNELWSNHVNYEEFPEFGVTSGMSDSDIWDI- 417

Query: 448 SLQAAGGSSIDLWSADEPPFVDPESQASPKEDDRPKDMDP 487
                G   ID W  DEP   +   QA   ++DRPK+  P
Sbjct: 418 ---GLGSLGIDKWPTDEPSLGETNGQAGQPKEDRPKNFGP 454

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537039|ref|XP_003537038.1| PREDICTED: heat stress transcription factor A-3-like [Glycine max]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/471 (49%), Positives = 306/471 (64%), Gaps = 52/471 (11%)

Query: 57  PQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKH 116
           P+PL+ +  NP+PPFL+KTFDLVD  +LDPIISW STG SFVVWDPLEF+R++LPR+FKH
Sbjct: 12  PKPLEMV--NPVPPFLSKTFDLVDAPTLDPIISWNSTGLSFVVWDPLEFARIVLPRHFKH 69

Query: 117 NNFSSFVRQLNTY----------GFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQ 166
           NNFSSFVRQLNTY          GFRKIDTD+WEF NEAFQRG++HLLKNI+RR+S QSQ
Sbjct: 70  NNFSSFVRQLNTYVSIISIKEITGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSSQSQ 129

Query: 167 QIGTYIGPFSEAEKSG--VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHA 224
            +G+YIG  S  E  G  V+ +IE+LRKE+ MLM+EVV+L Q+ R TA H   +N R+ +
Sbjct: 130 PVGSYIGIGSSTEAGGSEVEIEIERLRKEKTMLMEEVVDLQQEQRRTAHHAGEVNLRLQS 189

Query: 225 AEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVK--HQPHELGKSDSSV 282
           AEQRQKQMVSFLAKL+QNPAFLARL+ KKEQ EIDS R+ RKFVK  H+      +++  
Sbjct: 190 AEQRQKQMVSFLAKLIQNPAFLARLRHKKEQKEIDSPRVVRKFVKQHHETGTTTTAETLQ 249

Query: 283 EGQIVTYRPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVGIGS--GREDMPFQFENVAS 340
           EGQIV Y+PDW N+ + +  P+   V +E+SP YL  G+ G  S  G ED+  Q +N+  
Sbjct: 250 EGQIVRYQPDWRNIAMSSETPKLSSVSIEQSPHYLSQGLAGEMSVVGAEDLTAQIDNI-- 307

Query: 341 VDLAVSDELAVPGGFTKAPEQM-GEGASSSGIKDPHFKEKNDLM---------------- 383
               VSD+LA   G T + E M GEG+S+ G +DP FK K+ +                 
Sbjct: 308 ----VSDDLAAVHGITPSQEMMIGEGSSTFGAEDPLFKGKSVMSPILEVPPEYFPSFPEG 363

Query: 384 ----KENIHDISSPGIECIATQEDIWNLGFDATAGMSSSSNELLGN-LSTSDVPDLGMSG 438
               K++  D S+ G E +   EDIW+ G + +    SS NEL GN ++  + P  G++ 
Sbjct: 364 LTKEKKDFQDFSALGTEGMIKLEDIWDSGLNVSGAALSSGNELWGNHVNYEEFPQFGVTS 423

Query: 439 GL--SDIWDLSSLQAAGGSSIDLWSADEPPFVDPESQASPKEDDRPKDMDP 487
           G+  SDIWD+      G   ID W  DEP   + + Q+    +DR K+ DP
Sbjct: 424 GMSDSDIWDI----GLGSFGIDTWPTDEPSLGETDGQSGQPNEDRSKNFDP 470

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500984|ref|XP_004161246.1| PREDICTED: heat stress transcription factor A-3-like [Cucumis sativus]

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/450 (53%), Positives = 296/450 (65%), Gaps = 21/450 (4%)

Query: 54  ADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRN 113
           +DVPQPL+ LHG  +PPFL KTFD+V+D  LD I+SWGS G+SFVVWDP+EFS++ILP N
Sbjct: 116 SDVPQPLESLHGQFVPPFLWKTFDIVEDPVLDSIVSWGSAGQSFVVWDPVEFSKVILPSN 175

Query: 114 FKHNNFSSFVRQLNTY----GFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIG 169
           FKHNNFSSFVRQLNTY    GFRKIDTD+WEFANE FQRG++HLLKNI+RRKS  SQQIG
Sbjct: 176 FKHNNFSSFVRQLNTYVGIAGFRKIDTDKWEFANEDFQRGKKHLLKNIQRRKSSHSQQIG 235

Query: 170 TYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQ 229
           + IGP +   KSG++ +I +L+KER MLMQEVVEL QQ +GTA H+  +NQR+ +AEQRQ
Sbjct: 236 SLIGPSTGGGKSGLKDEIGRLKKERSMLMQEVVELQQQQKGTAQHVNTVNQRLQSAEQRQ 295

Query: 230 KQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTY 289
           KQM+SFLAKLLQNP FL  L++KKEQ +IDSSR KR+FVK   HE G +  SVEGQIV Y
Sbjct: 296 KQMISFLAKLLQNPEFLVCLQKKKEQKDIDSSRTKRRFVKQHKHEDGFT-PSVEGQIVKY 354

Query: 290 RPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVG-IGSGREDMP-FQFENVASVDLAVSD 347
           +PDW NL   +  P+ +   +E    YLL G+ G +GS  E MP FQF+N +S D+  S+
Sbjct: 355 QPDWENLARSSTTPDLNPSLLEGPFAYLLQGVFGELGSIPEGMPNFQFKNASSSDVIASE 414

Query: 348 ELAVPGGFTKAPEQMGEGASSSGIKDPHFKEKN----------DL---MKENIHDISSPG 394
           E     G  K  E++   AS+  + D HFK K           D    + E I   S  G
Sbjct: 415 EFVFHHGVVKPTEELRVEASNKSMDDQHFKGKAIESPPEESNPDYFLSLAEGILQSSHHG 474

Query: 395 IECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGG 454
              +   E IW+   +A    S SS +L  N    + P L +S   S IWD  S Q AG 
Sbjct: 475 TRGVIKPEKIWDAYLNADVSPSGSSTKLWSNPECFEDPFLQISSEQSPIWDFDS-QQAGD 533

Query: 455 SSIDLWSADEPPFVDPESQASPKEDDRPKD 484
           SS D W A   PF DP++QA PK  D   D
Sbjct: 534 SSTDKWLASGFPFDDPDNQAYPKNADESDD 563

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440197|ref|XP_004137871.1| PREDICTED: heat stress transcription factor A-3-like [Cucumis sativus]

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/450 (53%), Positives = 296/450 (65%), Gaps = 21/450 (4%)

Query: 54  ADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRN 113
           +DVPQPL+ LHG  +PPFL KTFD+V+D  LD I+SWGS G+SFVVWDP+EFS++ILP N
Sbjct: 116 SDVPQPLESLHGQFVPPFLWKTFDIVEDPVLDSIVSWGSAGQSFVVWDPVEFSKVILPSN 175

Query: 114 FKHNNFSSFVRQLNTY----GFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIG 169
           FKHNNFSSFVRQLNTY    GFRKIDTD+WEFANE FQRG++HLLKNI+RRKS  SQQIG
Sbjct: 176 FKHNNFSSFVRQLNTYVGIAGFRKIDTDKWEFANEDFQRGKKHLLKNIQRRKSSHSQQIG 235

Query: 170 TYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQ 229
           + IGP +   KSG++ +I +L+KER MLMQEVVEL QQ +GTA H+  +NQR+ +AEQRQ
Sbjct: 236 SLIGPSTGGGKSGLKDEIGRLKKERSMLMQEVVELQQQQKGTAQHVNTVNQRLQSAEQRQ 295

Query: 230 KQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTY 289
           KQM+SFLAKLLQNP FL  L++KKEQ +IDSSR KR+FVK   HE G +  SVEGQIV Y
Sbjct: 296 KQMISFLAKLLQNPEFLVCLQKKKEQKDIDSSRTKRRFVKQHKHEDGFT-PSVEGQIVKY 354

Query: 290 RPDWGNLTIPNVVPESHHVPVERSPDYLLDGMVG-IGSGREDMP-FQFENVASVDLAVSD 347
           +PDW NL   +  P+ +   +E    YLL G+ G +GS  E MP FQF+N +S D+  S+
Sbjct: 355 QPDWENLARSSTTPDLNPSLLEGPFAYLLQGVFGELGSIPEGMPNFQFKNASSSDVIASE 414

Query: 348 ELAVPGGFTKAPEQMGEGASSSGIKDPHFKEKN----------DL---MKENIHDISSPG 394
           E     G  K  E++   AS+  + D HFK K           D    + E I   S  G
Sbjct: 415 EFVFHHGVVKPTEELRVEASNKSMDDQHFKGKAIESPPEESNPDYFLSLAEGILQSSHHG 474

Query: 395 IECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGG 454
              +   E IW+   +A    S SS +L  N    + P L +S   S IWD  S Q AG 
Sbjct: 475 TRGVIKPEKIWDAYLNADVSPSGSSTKLWSNPECFEDPFLQISSEQSPIWDFDS-QQAGD 533

Query: 455 SSIDLWSADEPPFVDPESQASPKEDDRPKD 484
           SS D W A   PF DP++QA PK  D   D
Sbjct: 534 SSTDKWLASGFPFDDPDNQAYPKNADESDD 563

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539978|ref|NP_001234854.1| heat stress transcription factor A3 [Solanum lycopersicum] gi|264666931|gb|ACY71071.1| heat stress transcription factor A3 [Solanum lycopersicum]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/445 (51%), Positives = 287/445 (64%), Gaps = 41/445 (9%)

Query: 56  VPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFK 115
           VPQP++CLHG  IPPFL+KTFDLV+D  LD IISWG  GESFVVWDP+EFSRL+LPRNFK
Sbjct: 80  VPQPMECLHGIQIPPFLSKTFDLVEDPLLDTIISWGRNGESFVVWDPVEFSRLVLPRNFK 139

Query: 116 HNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPF 175
           H+NFSSFVRQLNTYGFRKID DRWEFANE F RG+RHLLKNI+RR+S Q           
Sbjct: 140 HSNFSSFVRQLNTYGFRKIDADRWEFANEGFSRGKRHLLKNIQRRRSHQGGSSSGSS--- 196

Query: 176 SEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSF 235
           +EA K G   +IE+LR E+ ++MQEVVEL QQ RGT   ME++N+++ AAEQRQKQMVSF
Sbjct: 197 AEAGK-GTMDEIEKLRNEKSLMMQEVVELQQQQRGTVQQMESVNEKLQAAEQRQKQMVSF 255

Query: 236 LAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHEL-GKSDSSVEGQIVTYRPDWG 294
           LAK+LQNP FLAR++Q KEQGEI S R  RKFVKHQ H   G   SS+EGQIV +R D+ 
Sbjct: 256 LAKVLQNPTFLARVRQMKEQGEITSPRTMRKFVKHQSHGPDGVGSSSMEGQIVKFRSDFQ 315

Query: 295 NLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAVPGG 354
           +L      P+ + V  ++ P+        IG G E MPF+        + V+DEL V   
Sbjct: 316 DLAGCFDSPDFNTVVDQQLPE--------IGLGAEAMPFE-------GVPVADELTVAHE 360

Query: 355 FTKAPEQMGEGASSSGIKDPHFKEKN------DLMKE-------------NIHDISSPGI 395
                ++   GAS    +   FK KN      ++M E             N+   S+P I
Sbjct: 361 LLNCSDREIRGASFFNSEGSQFKGKNVASPQIEVMPEYFASFPEEMGKEKNVSGFSTPAI 420

Query: 396 ECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGGS 455
             +   E++W +GF+A+AGM S+  EL  + S S VPD G+S GLSD+WD+  LQ AG S
Sbjct: 421 GSMVKDEELWGMGFEASAGMPSTGAELWDSRS-SYVPDFGVSSGLSDLWDIDPLQVAGSS 479

Query: 456 SIDLWSADEPPFVDPESQAS-PKED 479
            +D W AD  PF    S A+ PK D
Sbjct: 480 GVDKWPADGSPFGQSGSHANQPKND 504

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8347238|gb|AAF74563.1|AF208544_1 heat stress transcription factor A3 [Solanum peruvianum]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/445 (52%), Positives = 285/445 (64%), Gaps = 41/445 (9%)

Query: 56  VPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFK 115
           VPQP++CLHG  IPPFL+KTFDLV+D  LD IISWG+ GESFVVWDP+EFSRL+LPRNFK
Sbjct: 82  VPQPMECLHGIQIPPFLSKTFDLVEDPLLDTIISWGTNGESFVVWDPVEFSRLVLPRNFK 141

Query: 116 HNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPF 175
           H+NFSSFVRQLNTYGFRKID DRWEFANE F RG+RHLLKNI+RR+S Q           
Sbjct: 142 HSNFSSFVRQLNTYGFRKIDADRWEFANEGFSRGKRHLLKNIQRRRSQQGGSSSGSS--- 198

Query: 176 SEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSF 235
           +EA K G   +IE+LR E+ ++MQEVVEL QQ  GT   ME++N+++ AAEQRQKQMVSF
Sbjct: 199 AEAGK-GTMDEIEKLRNEKSLMMQEVVELQQQQHGTVQLMESVNEKLQAAEQRQKQMVSF 257

Query: 236 LAKLLQNPAFLARLKQKKEQGEIDSSRMKRKFVKHQPHEL-GKSDSSVEGQIVTYRPDWG 294
           LAK+LQNP FLAR++Q KEQGEI S R  RKFVKHQ H   G   SS+EGQIV +R D+ 
Sbjct: 258 LAKVLQNPTFLARVRQMKEQGEITSPRTMRKFVKHQSHGPDGVGSSSMEGQIVKFRSDFQ 317

Query: 295 NLTIPNVVPESHHVPVERSPDYLLDGMVGIGSGREDMPFQFENVASVDLAVSDELAVPGG 354
           +L      P+ + V  ++ P+         G G E MPF+   VA       D L V   
Sbjct: 318 DLAGCFDSPDFNPVVDQQLPE--------TGLGAEAMPFEGGPVA-------DGLTVAHE 362

Query: 355 FTKAPEQMGEGASSSGIKDPHFKEKN------DLMKE-------------NIHDISSPGI 395
                ++   GAS        FK KN      ++M E             NI   S+P I
Sbjct: 363 LLNCSDREIRGASFFNSGGSQFKGKNVASPQIEVMPEYFASFPEEMGKEKNISGFSAPAI 422

Query: 396 ECIATQEDIWNLGFDATAGMSSSSNELLGNLSTSDVPDLGMSGGLSDIWDLSSLQAAGGS 455
             +   E++W +GF+A+AGM S+  EL  +LS S VPD G+S GLSD+WD+  LQ AG S
Sbjct: 423 GSMVKDEELWGMGFEASAGMPSTGPELWDSLS-SYVPDFGVSSGLSDLWDIDPLQVAGSS 481

Query: 456 SIDLWSADEPPFVDPESQAS-PKED 479
            +D W AD  PF   ES A+ PK D
Sbjct: 482 GVDKWPADGSPFGQSESHANQPKND 506

Source: Solanum peruvianum

Species: Solanum peruvianum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
TAIR|locus:2144603	412	HSFA3 "AT5G03720" [Arabidopsis	0.568	0.672	0.568	2.2e-84
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.498	0.501	0.452	1.1e-55
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.445	0.438	0.478	2.6e-54
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.484	0.490	0.452	4.3e-54
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.478	0.573	0.455	8.9e-54
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.472	0.491	0.460	1.5e-53
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.470	0.663	0.448	1.3e-50
TAIR|locus:2083690	272	HSFA7A "AT3G51910" [Arabidopsi	0.404	0.724	0.507	5.8e-50
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.457	0.790	0.452	4.8e-46
TAIR|locus:2166562	331	HSFA9 "AT5G54070" [Arabidopsis	0.503	0.740	0.386	4.4e-45

TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
 Identities = 165/290 (56%), Positives = 208/290 (71%)

Query:    11 SPPNTAVITSSVPEATPLSMETIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPP 70
             SP   AV +   P + P+S  +   P ++  ++    F+ +P   +P PLD L GNPIPP
Sbjct:     2 SPKKDAV-SKPTPISVPVSRRS-DIPGSLY-VDTDMGFSGSP---LPMPLDILQGNPIPP 55

Query:    71 FLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYG 130
             FL+KTFDLVDD +LDP+ISWG TG SFVVWDPLEF+R+ILPRNFKHNNFSSFVRQLNTYG
Sbjct:    56 FLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYG 115

Query:   131 FRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDIEQL 190
             FRKIDTD+WEFANEAF RG++HLLKNI RR+SPQS Q        S+   + V G+IE+L
Sbjct:   116 FRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPTEVGGEIEKL 175

Query:   191 RKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLK 250
             RKER  LM+E+VEL QQ RGTA H++ +NQR+ AAEQRQKQ++SFLAKL QN  FL RLK
Sbjct:   176 RKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAKLFQNRGFLERLK 235

Query:   251 Q---KKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRPD-WGNL 296
                 K++ G +   + ++KF+KH  H+  + DS   G++V Y  D W  L
Sbjct:   236 NFKGKEKGGALGLEKARKKFIKH--HQQPQ-DSPTGGEVVKYEADDWERL 282

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 118/261 (45%), Positives = 169/261 (64%)

Query:    47 SFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFS 106
             S  T P+   PQP   L  N  PPFL+KT+D+VDD + D I+SW +   SF+VW P EF+
Sbjct:    15 SMETKPSPQ-PQPAAILSSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFA 73

Query:   107 RLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQ 166
             R +LP+NFKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RG++HLL++I RRK    Q
Sbjct:    74 RDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQ 133

Query:   167 QIG-----------TYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHM 215
               G           + +    E  K G++ ++E+L++++ +LMQE+V L QQ + T + +
Sbjct:   134 GQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQL 193

Query:   216 EAINQRIHAAEQRQKQMVSFLAKLLQNPAFLAR-LKQKKEQGE----IDSSRMKRKFVKH 270
             + + QR+   E RQ+Q++SFLAK +Q+P FL++ L+Q+ +Q E    I  +  KR+F K 
Sbjct:   194 QTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRF-KR 252

Query:   271 QPHELGKSDSSVEGQIVTYRP 291
                      ++ +GQIV Y+P
Sbjct:   253 DGIVRNNDSATPDGQIVKYQP 273

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 112/234 (47%), Positives = 156/234 (66%)

Query:    50 TTPAADVPQPLDCLHGNPIPP-FLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRL 108
             T P    P P   L+ N +PP FL+KT+D+V+D + D I+SW  T  SF+VWDP EFSR 
Sbjct:    31 TAPPPRNPHPATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRD 90

Query:   109 ILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKS------ 162
             +LP+ FKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RG++HLLK I RRKS      
Sbjct:    91 LLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGS 150

Query:   163 ----PQSQQIGTYIGPFS------EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTA 212
                 PQSQQ+    G  +      E  K G++ ++EQL++++ +LMQE+V+L QQ + T 
Sbjct:   151 SSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTD 210

Query:   213 SHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEIDSSRMKRK 266
             + ++ + + +   EQRQ+Q++SFLAK +QNP FL++  QK+    +  +   +K
Sbjct:   211 NKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKK 264

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 115/254 (45%), Positives = 166/254 (65%)

Query:    49 ATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRL 108
             + TP+  +P P+     N +PPFL+KT+D+VDD   + ++SW S   SFVVW   EFS++
Sbjct:    13 SNTPS--IPPPV-----NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKV 65

Query:   109 ILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRK------- 161
             +LP+ FKHNNFSSFVRQLNTYGFRK+D DRWEFANE F RGR+ LLK+I RRK       
Sbjct:    66 LLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQN 125

Query:   162 SPQSQQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQR 221
               Q+Q   + +G   E  K G++ ++E+L++++ +LMQE+V L QQ + T + ++ + Q+
Sbjct:   126 QQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQK 185

Query:   222 IHAAEQRQKQMVSFLAKLLQNPAFLARL-KQKKEQG--EIDSSRMKRKF-VKHQPHELGK 277
             +   EQRQ+QM+SFLAK +Q+P FL +L +Q    G  +I  S  KR+  V  Q +    
Sbjct:   186 VQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDN 245

Query:   278 SDSSVEGQIVTYRP 291
               + +  QIV Y+P
Sbjct:   246 VANGLNRQIVRYQP 259

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 112/246 (45%), Positives = 163/246 (66%)

Query:    57 PQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKH 116
             PQPL+ LH +  PPFL KT+DLV+D+  + ++SW  +  SF+VWDP  FS  +LPR FKH
Sbjct:    48 PQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKH 107

Query:   117 NNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKS---------PQSQQ 167
             NNFSSFVRQLNTYGFRK++ DRWEFANE F RG++HLLKNIRRRK+         PQS +
Sbjct:   108 NNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSE 167

Query:   168 IGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQ 227
               +      E  + G+ G+++ LR+++ +LM E+V L QQ + T  ++  I +++   E 
Sbjct:   168 QQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTES 227

Query:   228 RQKQMVSFLAKLLQNPAFLARL-KQKKEQGEIDSSRMKRKFVKHQPHELGKSDSSVEGQI 286
             +QKQM+SFLA+ +QNP F+ +L +QK+++ EI+ +  K++    +P + GK +    G  
Sbjct:   228 KQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKR---QRPIDQGKRNVEDYGDE 284

Query:   287 VTYRPD 292
               Y  D
Sbjct:   285 SGYGND 290

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 110/239 (46%), Positives = 158/239 (66%)

Query:    68 IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLN 127
             IPPFL+KT+D+VDD   D ++SW S   SFVVW+  EF++  LP+ FKHNNFSSFVRQLN
Sbjct:    21 IPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLN 80

Query:   128 TYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKS-----PQSQQIG-TYIGPFSEAEKS 181
             TYGFRK+D DRWEFANE F RG++ +LK+I RRK      PQ  Q+  + +G   E  K 
Sbjct:    81 TYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKF 140

Query:   182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQ 241
             G++ ++E+L++++ +LMQE+V L QQ + T  H++ + Q++H  EQRQ+QM+SFLAK +Q
Sbjct:   141 GLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQ 200

Query:   242 NPAFLARLKQKKEQGE--IDSSRMKRKF-VKHQPHELGKSDSSVEGQIVTYRPDWGNLT 297
             +P FL +  Q+  +    I  S  KR+  V+ Q +      + +  QIV Y+    + T
Sbjct:   201 SPGFLNQFSQQSNEANQHISESNKKRRLPVEDQMNSGSHGVNGLSRQIVRYQSSMNDAT 259

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 108/241 (44%), Positives = 157/241 (65%)

Query:    31 ETIAFPTTVEELEAFSSFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISW 90
             ET+ F  +V    A SS  ++ +   P+P++ L+    PPFL KT+++V+D + D ++SW
Sbjct:    11 ETVTFTGSVA---ASSSVGSSSS---PRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSW 64

Query:    91 GSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGR 150
              +   SFVVWD  +FS  +LPR FKH+NFSSF+RQLNTYGFRKID DRWEFANE F  G+
Sbjct:    65 SNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQ 124

Query:   151 RHLLKNIRRRKSPQSQQIGTYIGPFS--EAEKSGVQGDIEQLRKERGMLMQEVVELHQQH 208
             +HLLKNI+RR++   Q +       S  E  + G  G++E+L+++ G+L+ EVV L QQ 
Sbjct:   125 KHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQ 184

Query:   209 RGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARL----KQKKEQGEIDSSRMK 264
               + S + A+ QR+   E+RQ+QM++FLAK L NP F+ +     K+KK    +D  R +
Sbjct:   185 HSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFVQQFAVMSKEKKSLFGLDVGRKR 244

Query:   265 R 265
             R
Sbjct:   245 R 245

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 108/213 (50%), Positives = 148/213 (69%)

Query:    57 PQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKH 116
             PQP++ LH N  PPFL KTF++VDD + D I+SW   G SFVVWD   FS ++LPR+FKH
Sbjct:    16 PQPMEGLHENAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKH 75

Query:   117 NNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFS 176
             +NFSSF+RQLNTYGFRKI+ +RWEFANE F  G+R LLKNI+RR             PF+
Sbjct:    76 SNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRN------------PFT 123

Query:   177 EAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFL 236
              +  S       +LR+E+ +LM E+V L QQ + T S+++A+ QRI   E++Q+QM+SFL
Sbjct:   124 PSS-SPSHDACNELRREKQVLMMEIVSLRQQQQTTKSYIKAMEQRIEGTERKQRQMMSFL 182

Query:   237 AKLLQNPAFLARL-KQK-KEQGEI-DSSRMKRK 266
             A+ +Q+P+FL +L KQ+ K+  E+ D+   KRK
Sbjct:   183 ARAMQSPSFLHQLLKQRDKKIKELEDNESAKRK 215

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0032268 "regulation of cellular protein metabolic process" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 104/230 (45%), Positives = 148/230 (64%)

Query:    46 SSFATTPAADVPQPLDCLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEF 105
             SS +   +   P P++ L      PFL KTF++V D + + I+SW   G SFVVWDP  F
Sbjct:     4 SSSSRARSMPPPVPMEGLQEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSF 63

Query:   106 SRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQS 165
             S  ILP  FKHNNFSSFVRQLNTYGFRKI+ +RWEF NE F  G+R LLK+I+RR S  S
Sbjct:    64 SATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSS 123

Query:   166 QQIGTYIGPFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAA 225
                  Y     EA   GV+  + QLR+ER +LM E+  L Q+ +    +++A+ QRI+ A
Sbjct:   124 PPSLNYSQSQPEAHDPGVE--LPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGA 181

Query:   226 EQRQKQMVSFLAKLLQNPAFLARL-KQKKEQGE---IDSSRM-KRKFVKH 270
             E++Q+ M+SFL + ++NP+ L ++ +QK+++ E   ID + + K + V+H
Sbjct:   182 EKKQRHMMSFLRRAVENPSLLQQIFEQKRDREEAAMIDQAGLIKMEEVEH 231

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2166562 HSFA9 "AT5G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 100/259 (38%), Positives = 158/259 (61%)

Query:    68 IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLN 127
             I PFL KTF++VDD   DP++SW  T +SF++WD  EFS  +LP+ FKH NFSSF+RQLN
Sbjct:    69 ITPFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLN 128

Query:   128 TYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPFSEAEKSGVQGDI 187
             +YGF+K+D+DRWEFANE FQ G++HLLKNI+RR S  ++          EA  +  + ++
Sbjct:   129 SYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRR-SKNTKCCN------KEASTTTTETEV 181

Query:   188 EQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLA 247
             E L++E+  +  E+++L QQ   +   M  + ++IH  +  Q+ M+SF AKL ++  F+ 
Sbjct:   182 ESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKLAKDQRFVE 241

Query:   248 RLKQKKE---QGEIDSSRMKRKFVKHQPHELGKSDSSVEGQIVTYRPDWGNLTIPNVVP- 303
             RL +K++   Q E++++   +K    Q  E  K+   VE + +       N   P+++  
Sbjct:   242 RLVKKRKMKIQRELEAAEFVKKLKLLQDQETQKNLLDVEREFMAMAATEHNPE-PDILVN 300

Query:   304 -ESHHVPVE-RSPDYLLDG 320
              +S +   +  S D L+DG
Sbjct:   301 NQSGNTRCQLNSEDLLVDG 319

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021673001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (531 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	487
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	1e-51
smart00415	105	smart00415, HSF, heat shock factor	1e-46
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	7e-29

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  169 bits (431), Expect = 1e-51
 Identities = 55/96 (57%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 70  PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTY 129
           PFL K +++++D S D IISW   G SF++WDP EF++ +LP+ FKHNNFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 130 GFRKIDTDR--WEFANEAFQRGRRHLLKNIRRRKSP 163
           GF K+  DR  WEFA+  F+RG++ LL  I+RRKS 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKSE 96

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  156 bits (397), Expect = 1e-46
 Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 11/105 (10%)

Query: 67  PIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQL 126
             PPFL K + LV+D S D IISW  +G+SFV+WDP EF++ +LPR FKHNNFSSFVRQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 127 NTYGFRKID-----------TDRWEFANEAFQRGRRHLLKNIRRR 160
           N YGFRK+D           +D+WEFAN  F RG+  LL+NI+R+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  114 bits (288), Expect = 7e-29
 Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 10/107 (9%)

Query: 67  PIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQL 126
               F+ K + ++++     +I W   G SFV+ DP EF+++ILPR FKH NF+SFVRQL
Sbjct: 9   QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQL 68

Query: 127 NTYGFRKI----------DTDRWEFANEAFQRGRRHLLKNIRRRKSP 163
           N YGF K+          + + WEF N+ FQ G   LLK I+R+K+P
Sbjct: 69  NKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAP 115

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	487
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
smart00415	105	HSF heat shock factor.	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.97
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	94.49
KOG3806	177	consensus Predicted transcription factor [Transcri	91.9
smart00413	87	ETS erythroblast transformation specific domain. v	91.4
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	87.01
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	83.9
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.52
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.3

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=9.7e-44  Score=355.77  Aligned_cols=187  Identities=44%  Similarity=0.791  Sum_probs=170.0

Q ss_pred             CCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec--CCceeEEcc
Q 046676           67 PIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID--TDRWEFANE  144 (487)
Q Consensus        67 ~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~--~d~~eF~h~  144 (487)
                      .+++|+.|||.||+||++++||+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+  +++|+|+|+
T Consensus        11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~   90 (304)
T KOG0627|consen   11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP   90 (304)
T ss_pred             CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence            689999999999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             ccccCchhhhccccccCCCCccccC--CCCC--------CCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046676          145 AFQRGRRHLLKNIRRRKSPQSQQIG--TYIG--------PFSEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASH  214 (487)
Q Consensus       145 ~F~Rg~p~LL~~IkRkk~~~s~q~~--s~~g--------~~~e~~~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~q  214 (487)
                      +|+||+++||++|+||++.+.....  ....        .........++.+++.|++++..|++|+.+|++++..+.++
T Consensus        91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~  170 (304)
T KOG0627|consen   91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT  170 (304)
T ss_pred             hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999988654421  1000        11223456788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhh
Q 046676          215 MEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKK  253 (487)
Q Consensus       215 mq~lnqRLq~~EqrQqQMlsFLakvvqnP~fl~ql~~~~  253 (487)
                      ++.+.+++...+++|++|+.|+++++++|.|+.++.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            999999999999999999999999999999999998643

>smart00415 HSF heat shock factor

Probab=100.00  E-value=9.7e-34  Score=245.29  Aligned_cols=94  Identities=64%  Similarity=1.169  Sum_probs=90.8

Q ss_pred             CCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeecC----------
Q 046676           67 PIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDT----------  136 (487)
Q Consensus        67 ~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~~----------  136 (487)
                      ++|.|+.|||+||+|+++++||+|+++|++|+|+|++.|.+.|||+||+|+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            3688999999999999999999999999999999999999999999999999999999999999999875          


Q ss_pred             -CceeEEccccccCchhhhcccccc
Q 046676          137 -DRWEFANEAFQRGRRHLLKNIRRR  160 (487)
Q Consensus       137 -d~~eF~h~~F~Rg~p~LL~~IkRk  160 (487)
                       +.|+|+|++|+||+++||.+|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             789999999999999999999996

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=9.3e-34  Score=243.50  Aligned_cols=93  Identities=51%  Similarity=1.001  Sum_probs=81.6

Q ss_pred             hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeecCC---------cee
Q 046676           70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTD---------RWE  140 (487)
Q Consensus        70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~~d---------~~e  140 (487)
                      .||.|||+||+|++++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+...         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            59999999999999999999999999999999999999999999999999999999999999999753         399


Q ss_pred             EEccccccCchhhhccccccCC
Q 046676          141 FANEAFQRGRRHLLKNIRRRKS  162 (487)
Q Consensus       141 F~h~~F~Rg~p~LL~~IkRkk~  162 (487)
                      |+|++|+||++++|..|+||++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999874

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.97  E-value=7.4e-32  Score=269.39  Aligned_cols=99  Identities=46%  Similarity=0.918  Sum_probs=92.6

Q ss_pred             CCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec-C--------
Q 046676           66 NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID-T--------  136 (487)
Q Consensus        66 ~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~-~--------  136 (487)
                      .++..|+.|||.||+++++..+|+|+++|++|||+|++.|.+.|||+||||+||+|||||||+||||||. .        
T Consensus         8 ~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n   87 (282)
T COG5169           8 SQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYN   87 (282)
T ss_pred             CchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccc
Confidence            3467899999999999999999999999999999999999999999999999999999999999999997 2        


Q ss_pred             -CceeEEccccccCchhhhccccccCCCC
Q 046676          137 -DRWEFANEAFQRGRRHLLKNIRRRKSPQ  164 (487)
Q Consensus       137 -d~~eF~h~~F~Rg~p~LL~~IkRkk~~~  164 (487)
                       ..|+|.|++|++|..++|++|+|+|...
T Consensus        88 ~~~wef~~~nF~~g~~~~L~~i~r~ka~~  116 (282)
T COG5169          88 ENVWEFGNKNFQLGMIELLKKIKRKKAPS  116 (282)
T ss_pred             hhheeecCchhccCcHHHHHHhhhhhcCc
Confidence             3499999999999999999999977653

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=94.49  E-value=0.025  Score=48.35  Aligned_cols=71  Identities=27%  Similarity=0.441  Sum_probs=51.4

Q ss_pred             hHHHHHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcC-CCCCCCChhhHHhhhccccc----eeecCCceeE
Q 046676           71 FLAKTFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILP-RNFKHNNFSSFVRQLNTYGF----RKIDTDRWEF  141 (487)
Q Consensus        71 Fl~KLy~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLP-kyFKh~nfsSFvRQLN~YGF----rKv~~d~~eF  141 (487)
                      +..-|.++|.|+++.++|+|.. .+..|.|.|++++++.--- +--..-+|.++-|-|..|.=    .||...+..|
T Consensus         4 Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y   80 (85)
T PF00178_consen    4 LWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY   80 (85)
T ss_dssp             HHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred             HHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence            3455779999999999999999 9999999999999974211 12234578999999887632    4455555444

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=91.90  E-value=0.75  Score=44.45  Aligned_cols=78  Identities=27%  Similarity=0.453  Sum_probs=56.3

Q ss_pred             CCCCChhHHHHHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcCCCC-CCCChhhHHhhhccc---c-ceeecCCc
Q 046676           65 GNPIPPFLAKTFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILPRNF-KHNNFSSFVRQLNTY---G-FRKIDTDR  138 (487)
Q Consensus        65 ~~~~p~Fl~KLy~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLPkyF-Kh~nfsSFvRQLN~Y---G-FrKv~~d~  138 (487)
                      .++.-....-|.++|+|+++.++|+|.. +|--|.+.|+++.++.---+== ..-||.-.-|-|..|   + -+||...+
T Consensus        65 ~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyyY~kni~~Kv~Gkr  144 (177)
T KOG3806|consen   65 GSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYYYDKNILKKVPGKR  144 (177)
T ss_pred             CCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCceeecCCce
Confidence            3444456667779999999999999998 6879999999999986433322 256788888888776   1 25555555


Q ss_pred             eeEE
Q 046676          139 WEFA  142 (487)
Q Consensus       139 ~eF~  142 (487)
                      ..|.
T Consensus       145 ~~Yk  148 (177)
T KOG3806|consen  145 FVYK  148 (177)
T ss_pred             EEEE
Confidence            5554

>smart00413 ETS erythroblast transformation specific domain

Probab=91.40  E-value=0.31  Score=42.09  Aligned_cols=69  Identities=32%  Similarity=0.470  Sum_probs=49.5

Q ss_pred             HHHHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhcccc----ceeecCCceeE
Q 046676           73 AKTFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYG----FRKIDTDRWEF  141 (487)
Q Consensus        73 ~KLy~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YG----FrKv~~d~~eF  141 (487)
                      .-|.++|.|+++.++|+|.. ++.-|.+.|+++.++.---+ -=..-||..+-|-|..|-    .+||...+.+|
T Consensus         6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy~~~il~Kv~g~rl~Y   80 (87)
T smart00413        6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILRKVPGKRLVY   80 (87)
T ss_pred             HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCcEEecCCceEEE
Confidence            34679999999999999998 68899999999888742221 113457888889887773    24454444444

variation of the helix-turn-helix motif

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=87.01  E-value=1.7  Score=39.67  Aligned_cols=61  Identities=23%  Similarity=0.419  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhhhhccc
Q 046676          196 MLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQNPAFLARLKQKKEQGEI  258 (487)
Q Consensus       196 ~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvqnP~fl~ql~~~~~~~~i  258 (487)
                      ..+.||..+.+.++.+...+.++.++++..++.+.+|.++-|+++++  +...+.+-.|.+++
T Consensus         3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD--isdkIdkCeC~Kel   63 (121)
T PF03310_consen    3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD--ISDKIDKCECNKEL   63 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH--HHHHHHT-TTHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH--HHHHHHhchhhHHH
Confidence            45678888888888888899999999999998899999999999998  44444444445554

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.90  E-value=6.3  Score=33.14  Aligned_cols=54  Identities=24%  Similarity=0.331  Sum_probs=35.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046676          182 GVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAK  238 (487)
Q Consensus       182 ~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLak  238 (487)
                      -|.-||+.||.+++.|.+|+..++.+...+..+-+++.+..   .-||..+-+.|-+
T Consensus        22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~---~~WQerlrsLLGk   75 (79)
T COG3074          22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ---NGWQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence            35678999999999999999888777665544444333222   2356666665554

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.52  E-value=8.5  Score=32.11  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=17.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046676          183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRI  222 (487)
Q Consensus       183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRL  222 (487)
                      |..|++.|+.++..|..+...|+++...+.+.......||
T Consensus        23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl   62 (72)
T PF06005_consen   23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL   62 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555544444444444444443333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.30  E-value=9.3  Score=38.02  Aligned_cols=62  Identities=18%  Similarity=0.327  Sum_probs=37.7

Q ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046676          180 KSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIHAAEQRQKQMVSFLAKLLQ  241 (487)
Q Consensus       180 ~~~Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq~~EqrQqQMlsFLakvvq  241 (487)
                      +..+..+++.|+++...|.....+++.+......++..+++++..++...+.|..++..++.
T Consensus        51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555666666777777777766666666666654

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	487
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		1e-19
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		2e-18
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		6e-14
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		1e-13
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-13
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		3e-13
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		6e-13
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		6e-13

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 11/109 (10%)
Query: 68  IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLN 127
           +P FL K + LV D   D +I W  +G SF V+D  +F++ +LP+ FKHNN +SFVRQLN
Sbjct: 17  VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLN 76
Query: 128 TYGFRKI-----------DTDRWEFANEAFQRGRRHLLKNIRRRKSPQS 165
            YGFRK+           + D  EF +  F RG+  LL+NI+R+ +  S
Sbjct: 77  MYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVS 125

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 10/103 (9%)
Query: 68  IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLN 127
           +P FLAK + LVDD   + +I W   G+SFV+ +  +F++ +LP N+KHNN +SF+RQLN
Sbjct: 4   VPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLN 63
Query: 128 TYGFRKI----------DTDRWEFANEAFQRGRRHLLKNIRRR 160
            YGF KI          D D  EF++  F+R    LL  I+R+
Sbjct: 64  MYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 69  PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
           P F+ K + +V+D S +  I W ++GES VV +   F + +LP+ FKH+NF+SFVRQLN 
Sbjct: 13  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 129 YGFRKI-----------DTDRWEFANE 144
           YG+ K+           +  RWEF NE
Sbjct: 73  YGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 69  PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
           P F+ K + +V+D S +  I W ++GES VV +   F + +LP+ FKH+NF+SFVRQLN 
Sbjct: 3   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 129 YGFRKI-----------DTDRWEFANE 144
           YG+ K+           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 69  PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
           P F+ K + +V+D S +  I W ++GES VV +   F + +LP+ FKH+NF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 129 YGFRKI-----------DTDRWEFANE 144
           YG+ K+           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 69  PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
           P F+ K +  V+D S +  I W ++GES VV +   F + +LP+ FKH+NF+SFVRQLN 
Sbjct: 3   PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 129 YGFRKI-----------DTDRWEFANE 144
           YG+ K+           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSXLSNNDSRWEFENE 89

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 69  PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
           P F+ K + +V+D S +  I W ++GES VV +   F + +L + FKH+NF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 129 YGFRKI-----------DTDRWEFANE 144
           YG+ K+           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 69  PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
           P F+ K + +V+D S +  I W ++GES VV +   F + +L + FKH+NF+SFVRQLN 
Sbjct: 1   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 129 YGFRKI-----------DTDRWEFANE 144
           YG+ K+           +  RWEF NE
Sbjct: 61  YGWHKVQDVKSGSMLSNNDSRWEFENE 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	487
1hks_A	106	Heat-shock transcription factor; transcription reg	5e-53
2ldu_A	125	Heat shock factor protein 1; structural genomics,	1e-51
3hts_B	102	Heat shock transcription factor; transcription reg	8e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  172 bits (439), Expect = 5e-53
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 10/106 (9%)

Query: 65  GNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVR 124
           G+ +P FLAK + LVDD   + +I W   G+SFV+ +  +F++ +LP N+KHNN +SF+R
Sbjct: 1   GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 125 QLNTYGFRKI----------DTDRWEFANEAFQRGRRHLLKNIRRR 160
           QLN YGF KI          D D  EF++  F+R    LL  I+R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  170 bits (432), Expect = 1e-51
 Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 11/111 (9%)

Query: 66  NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQ 125
           + +P FL K + LV D   D +I W  +G SF V+D  +F++ +LP+ FKHNN +SFVRQ
Sbjct: 15  SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQ 74

Query: 126 LNTYGFRKI-----------DTDRWEFANEAFQRGRRHLLKNIRRRKSPQS 165
           LN YGFRK+           + D  EF +  F RG+  LL+NI+R+ +  S
Sbjct: 75  LNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVS 125

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  143 bits (363), Expect = 8e-42
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 11/93 (11%)

Query: 65  GNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVR 124
               P F+ K + +V+D S +  I W ++GES VV +   F + +LP+ FKH+NF+SFVR
Sbjct: 9   SMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVR 68

Query: 125 QLNTYGFRKI-----------DTDRWEFANEAF 146
           QLN YG+ K+           +  RWEF NE  
Sbjct: 69  QLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 7e-08
 Identities = 38/297 (12%), Positives = 86/297 (28%), Gaps = 67/297 (22%)

Query: 14  NTAVITS-SVPEATPLSMETIAFPTTVEE-LEAFSSFATTPAADVPQPLDCLHGNP---- 67
              V    S    T +S++  +   T +E       +      D+P        NP    
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLT-TNPRRLS 331

Query: 68  -IPPFLA------KTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRL-----ILPRNFK 115
            I   +         +  V+   L  II       S  V +P E+ ++     + P    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIE-----SSLNVLEPAEYRKMFDRLSVFP---P 383

Query: 116 HNNFSSFVRQLNTYGFRKIDTDRWEFANEAFQRGRRHLLKNIRRRKSPQSQQIGTYIGPF 175
             +  + +  L+   F  I +D     N+  +     L++     K P+   I       
Sbjct: 384 SAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKYS---LVE-----KQPKESTISIP---- 429

Query: 176 SEAEKSGVQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAIN-------QRI--HAAE 226
                  +  +++   +    L + +V+ +   +   S               I  H   
Sbjct: 430 ------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 227 QRQKQMVSFLAKLLQNPAFL-ARLKQKKEQGEIDSS--------RMKRKFV-KHQPH 273
               + ++    +  +  FL  +++          S        +  + ++  + P 
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	487
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
4avp_A	106	ETS translocation variant 1; transcription, transc	92.47
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	92.45
2dao_A	118	Transcription factor ETV6; ETS domain, structural	88.66
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	87.06
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	86.39
1awc_A	110	Protein (GA binding protein alpha); complex (trans	86.28
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	85.64
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	83.76
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	83.18
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	83.09
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	83.05

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=1.3e-38  Score=275.54  Aligned_cols=95  Identities=45%  Similarity=0.857  Sum_probs=91.5

Q ss_pred             CCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec----------
Q 046676           66 NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID----------  135 (487)
Q Consensus        66 ~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~----------  135 (487)
                      .++|+|+.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+|||||||+|||||+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4688999999999999999999999999999999999999999999999999999999999999999985          


Q ss_pred             CCceeEEccccccCchhhhcccccc
Q 046676          136 TDRWEFANEAFQRGRRHLLKNIRRR  160 (487)
Q Consensus       136 ~d~~eF~h~~F~Rg~p~LL~~IkRk  160 (487)
                      ++.|+|+|++|+||+|+||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            4789999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=9.3e-38  Score=277.97  Aligned_cols=101  Identities=46%  Similarity=0.839  Sum_probs=95.6

Q ss_pred             CCCCCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec-------
Q 046676           63 LHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID-------  135 (487)
Q Consensus        63 ~~~~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~-------  135 (487)
                      .....+++||.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+||+||||+|||||+.       
T Consensus        12 ~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~   91 (125)
T 2ldu_A           12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGL   91 (125)
T ss_dssp             CSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSS
T ss_pred             ccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccc
Confidence            4556789999999999999999999999999999999999999999999999999999999999999999984       


Q ss_pred             ----CCceeEEccccccCchhhhccccccCCC
Q 046676          136 ----TDRWEFANEAFQRGRRHLLKNIRRRKSP  163 (487)
Q Consensus       136 ----~d~~eF~h~~F~Rg~p~LL~~IkRkk~~  163 (487)
                          ++.|+|+|++|+||+|+||.+|+||++.
T Consensus        92 ~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           92 VKPERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             SSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             ccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence                4689999999999999999999999864

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=6e-32  Score=233.33  Aligned_cols=84  Identities=44%  Similarity=0.831  Sum_probs=77.6

Q ss_pred             cCCCCCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec------
Q 046676           62 CLHGNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID------  135 (487)
Q Consensus        62 ~~~~~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~------  135 (487)
                      ..+.+.+|+|+.|||.||+|+++++||+|+++|++|||+|+++|+++|||+||||+||+||+||||+|||||+.      
T Consensus         6 s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~   85 (102)
T 3hts_B            6 SVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGS   85 (102)
T ss_dssp             ----CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC------
T ss_pred             CCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCc
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999997      


Q ss_pred             -----CCceeEEccc
Q 046676          136 -----TDRWEFANEA  145 (487)
Q Consensus       136 -----~d~~eF~h~~  145 (487)
                           +++|||+|++
T Consensus        86 ~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           86 MLSNNDSRWEFENER  100 (102)
T ss_dssp             ---CCSCCEEEEECC
T ss_pred             ccCCCcCCeEecCCC
Confidence                 6799999986

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=92.47  E-value=0.14  Score=44.47  Aligned_cols=75  Identities=25%  Similarity=0.418  Sum_probs=57.1

Q ss_pred             CChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEE
Q 046676           68 IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFA  142 (487)
Q Consensus        68 ~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~  142 (487)
                      ......-|.++|+|+++.++|+|...+..|.+.|+++.++.--.+ -=..-||..+-|-|..|   |. +||...+..|.
T Consensus        11 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk   90 (106)
T 4avp_A           11 SLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK   90 (106)
T ss_dssp             CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred             cEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence            344566678999999999999999988899999999888743221 11366899999999887   44 67776666665

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=92.45  E-value=0.13  Score=44.37  Aligned_cols=74  Identities=22%  Similarity=0.352  Sum_probs=55.3

Q ss_pred             hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEEc
Q 046676           70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFAN  143 (487)
Q Consensus        70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~h  143 (487)
                      ....-|.++|+|+++.++|+|...+..|.+.|+++.++.--.+ -=..-||..+-|-|..|   |. +||...+..|..
T Consensus         9 ~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYkF   87 (102)
T 2ypr_A            9 QLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF   87 (102)
T ss_dssp             CHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEEE
T ss_pred             eHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence            3555677999999999999999888999999999888743221 11366899999999887   33 666666666653

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.66  E-value=0.38  Score=42.48  Aligned_cols=75  Identities=23%  Similarity=0.393  Sum_probs=56.2

Q ss_pred             CChhHHHHHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeE
Q 046676           68 IPPFLAKTFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEF  141 (487)
Q Consensus        68 ~p~Fl~KLy~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF  141 (487)
                      ....-.-|.++|.|+++.++|+|.. ++.-|.+.|+++.++.--.+ -=..-||...-|-|..|   |+ +||...+..|
T Consensus         8 ~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY   87 (118)
T 2dao_A            8 CRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLF   87 (118)
T ss_dssp             CCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEE
T ss_pred             chHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEE
Confidence            3445567789999999999999987 45689999999888853322 11356899999999988   44 6666666666


Q ss_pred             E
Q 046676          142 A  142 (487)
Q Consensus       142 ~  142 (487)
                      .
T Consensus        88 ~   88 (118)
T 2dao_A           88 R   88 (118)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=87.06  E-value=0.36  Score=41.31  Aligned_cols=61  Identities=25%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhcccc
Q 046676           70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYG  130 (487)
Q Consensus        70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YG  130 (487)
                      ..-.-|.++|+|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|-
T Consensus         7 ~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY   68 (98)
T 1fli_A            7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY   68 (98)
T ss_dssp             CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred             eHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence            3455667889999999999999888899999999888753222 113567888888887773

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=86.39  E-value=0.46  Score=43.74  Aligned_cols=74  Identities=20%  Similarity=0.371  Sum_probs=56.0

Q ss_pred             hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEEc
Q 046676           70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFAN  143 (487)
Q Consensus        70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~h  143 (487)
                      ....-|.++|.|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|   |+ +||...+..|..
T Consensus         7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF   85 (157)
T 1hbx_G            7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF   85 (157)
T ss_dssp             CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred             cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence            3455677999999999999998877799999999988854332 11456899999999887   33 556666666664

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=86.28  E-value=0.69  Score=40.36  Aligned_cols=70  Identities=21%  Similarity=0.280  Sum_probs=51.8

Q ss_pred             HHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccccc----eeecCCceeEE
Q 046676           73 AKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYGF----RKIDTDRWEFA  142 (487)
Q Consensus        73 ~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YGF----rKv~~d~~eF~  142 (487)
                      .-|.++|+|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|.=    +||...+..|.
T Consensus         5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~   79 (110)
T 1awc_A            5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK   79 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred             HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence            3467899999999999999988899999999988754332 1134578888898888743    44555555555

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=85.64  E-value=0.84  Score=39.32  Aligned_cols=72  Identities=11%  Similarity=0.252  Sum_probs=50.8

Q ss_pred             hHHHHHHhhcCCC-CCCeeEEcCC-CCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEE
Q 046676           71 FLAKTFDLVDDTS-LDPIISWGST-GESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFA  142 (487)
Q Consensus        71 Fl~KLy~mVedp~-~~~IIsWs~~-G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~  142 (487)
                      ...-|.++|.|++ ..++|+|... ...|.+.|+++.++.--.+ -=..-||..+-|-|..|   |. +||...+..|.
T Consensus         7 LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~   85 (103)
T 3jtg_A            7 LWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK   85 (103)
T ss_dssp             HHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred             HHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence            4455678899998 5689999874 5589999999888742211 11467899999999887   33 55555556555

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=83.76  E-value=0.53  Score=39.94  Aligned_cols=74  Identities=20%  Similarity=0.371  Sum_probs=55.9

Q ss_pred             hhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc---cc-eeecCCceeEEc
Q 046676           70 PFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY---GF-RKIDTDRWEFAN  143 (487)
Q Consensus        70 ~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y---GF-rKv~~d~~eF~h  143 (487)
                      ..-.-|.++|.|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|   |. +||...+..|..
T Consensus         6 ~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F   84 (93)
T 1bc8_C            6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF   84 (93)
T ss_dssp             CHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred             cHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence            3455677999999999999999877799999999988853321 11456899999999887   33 556666667664

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=83.18  E-value=6.1  Score=32.71  Aligned_cols=41  Identities=22%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046676          183 VQGDIEQLRKERGMLMQEVVELHQQHRGTASHMEAINQRIH  223 (487)
Q Consensus       183 Le~EIE~LK~ek~~L~qELvkLqQQQ~~~~~qmq~lnqRLq  223 (487)
                      +.-|++.||.++..|.+|...++........+.+++.+...
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~   65 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN   65 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44577777777777777777766555544444444444333

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=83.09  E-value=1  Score=41.94  Aligned_cols=77  Identities=26%  Similarity=0.327  Sum_probs=57.8

Q ss_pred             CCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccccc----eeecCCcee
Q 046676           66 NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYGF----RKIDTDRWE  140 (487)
Q Consensus        66 ~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YGF----rKv~~d~~e  140 (487)
                      ++......-|.++|.|+...++|+|...+..|.+.|+++.++.--.+ -=..-||...-|-|..|-=    +||...+..
T Consensus        62 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv  141 (171)
T 2nny_A           62 SGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV  141 (171)
T ss_dssp             CSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTE
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEE
Confidence            34455667788999999999999999998899999999998854322 1135578889999988844    356556666


Q ss_pred             EE
Q 046676          141 FA  142 (487)
Q Consensus       141 F~  142 (487)
                      |.
T Consensus       142 Y~  143 (171)
T 2nny_A          142 YR  143 (171)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=83.05  E-value=0.86  Score=41.57  Aligned_cols=79  Identities=27%  Similarity=0.336  Sum_probs=59.3

Q ss_pred             CCCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccccc----eeecCCce
Q 046676           65 GNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYGF----RKIDTDRW  139 (487)
Q Consensus        65 ~~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YGF----rKv~~d~~  139 (487)
                      +++....-.-|.++|+|++..++|+|...+..|.+.|+++.++.--.+ -=..-||...-|-|..|-=    +||...+.
T Consensus        36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl  115 (146)
T 1gvj_A           36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  115 (146)
T ss_dssp             TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeE
Confidence            344555677788999999999999999998899999999998854322 1135678999999988843    46666666


Q ss_pred             eEEc
Q 046676          140 EFAN  143 (487)
Q Consensus       140 eF~h  143 (487)
                      .|..
T Consensus       116 vY~F  119 (146)
T 1gvj_A          116 VYRF  119 (146)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	487
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	2e-40
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	3e-33

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  138 bits (350), Expect = 2e-40
 Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 10/106 (9%)

Query: 65  GNPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVR 124
           G+ +P FLAK + LVDD   + +I W   G+SFV+ +  +F++ +LP N+KHNN +SF+R
Sbjct: 1   GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 125 QLNTYGFRKI----------DTDRWEFANEAFQRGRRHLLKNIRRR 160
           QLN YGF KI          D D  EF++  F+R    LL  I+R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  119 bits (299), Expect = 3e-33
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 11/87 (12%)

Query: 69  PPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNT 128
           P F+ K + +V+D S +  I W ++GES VV +   F + +LP+ FKH+NF+SFVRQLN 
Sbjct: 3   PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62

Query: 129 YGFRKI-----------DTDRWEFANE 144
           YG+ K+           +  RWEF NE
Sbjct: 63  YGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	487
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.95
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	91.76
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	89.2
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	89.04
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	88.56
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	88.35
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	85.6

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=1.8e-35  Score=253.64  Aligned_cols=95  Identities=45%  Similarity=0.857  Sum_probs=90.5

Q ss_pred             CCCChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec----------
Q 046676           66 NPIPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID----------  135 (487)
Q Consensus        66 ~~~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~----------  135 (487)
                      .++|+|+.|||+||+|+++++||+|+++|++|+|+|+.+|+++|||+||+|+||+||+||||+|||+|+.          
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            5689999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCceeEEccccccCchhhhcccccc
Q 046676          136 TDRWEFANEAFQRGRRHLLKNIRRR  160 (487)
Q Consensus       136 ~d~~eF~h~~F~Rg~p~LL~~IkRk  160 (487)
                      ++.++|+|++|+||+|+||.+|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence            3568999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.95  E-value=1.8e-29  Score=212.16  Aligned_cols=78  Identities=47%  Similarity=0.899  Sum_probs=73.8

Q ss_pred             CChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeec-----------C
Q 046676           68 IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKID-----------T  136 (487)
Q Consensus        68 ~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~-----------~  136 (487)
                      .|+|+.|||+||+|+++++||+|+++|++|+|+|+++|++.|||+||+|+||+||+||||+|||+|+.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999985           3


Q ss_pred             CceeEEccc
Q 046676          137 DRWEFANEA  145 (487)
Q Consensus       137 d~~eF~h~~  145 (487)
                      +.|||+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            579999984

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=91.76  E-value=0.051  Score=45.63  Aligned_cols=75  Identities=19%  Similarity=0.305  Sum_probs=54.6

Q ss_pred             CChhHHHHHHhhcCCCCCC------eeEEcCCCCeEEEeCCchhhhhhcCCCCCCCChhhHHhhhccccceeecCC---c
Q 046676           68 IPPFLAKTFDLVDDTSLDP------IISWGSTGESFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTD---R  138 (487)
Q Consensus        68 ~p~Fl~KLy~mVedp~~~~------IIsWs~~G~sFvI~d~~~F~k~VLPkyFKh~nfsSFvRQLN~YGFrKv~~d---~  138 (487)
                      -..|..|||.+|.=-..+.      -|.|..++. |.| +...|++. |--     +-.|.-.-|..|||..+..+   .
T Consensus        27 ~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~l-Lgi-----K~ntlN~Nfr~~gF~q~~~d~~~~   98 (114)
T d1pp7u_          27 NSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALV-MGI-----KLNTLNVNLRDLAFEQLQHDKGGW   98 (114)
T ss_dssp             GGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHH-HTC-----CHHHHHHHHHHTTCEEEEEEETTE
T ss_pred             cCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHH-HCC-----ChhhhcCcccccCceeeecCCCcc
Confidence            3569999999997433322      379999986 666 88999983 331     34666788888999998653   3


Q ss_pred             eeEEccccccCc
Q 046676          139 WEFANEAFQRGR  150 (487)
Q Consensus       139 ~eF~h~~F~Rg~  150 (487)
                      +.++++.|.|.-
T Consensus        99 ~~w~~~~F~~nS  110 (114)
T d1pp7u_          99 TQWKRSGFTRNS  110 (114)
T ss_dssp             EEEECTTEETTE
T ss_pred             eeeccCCccccc
Confidence            567899998863

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.1  Score=42.64  Aligned_cols=59  Identities=25%  Similarity=0.400  Sum_probs=44.5

Q ss_pred             hHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccc
Q 046676           71 FLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTY  129 (487)
Q Consensus        71 Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~Y  129 (487)
                      -..-|.++|.|+++.++|+|...+.-|.+.|+++.++.---+ -=..-||...-|-|..|
T Consensus         8 Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyY   67 (98)
T d1flia_           8 LWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYY   67 (98)
T ss_dssp             SHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Confidence            445667899999999999998877789999999988743221 11234788888888776

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.04  E-value=0.18  Score=41.93  Aligned_cols=69  Identities=22%  Similarity=0.285  Sum_probs=49.9

Q ss_pred             HHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhccccc----eeecCCceeEE
Q 046676           74 KTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYGF----RKIDTDRWEFA  142 (487)
Q Consensus        74 KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YGF----rKv~~d~~eF~  142 (487)
                      -|.++|.|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||...-|-|..|-=    +||...+..|.
T Consensus         6 FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY~~~il~Kv~g~rl~Y~   79 (110)
T d1awca_           6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK   79 (110)
T ss_dssp             HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred             HHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhcccEEecCCcEEEEe
Confidence            467899999999999999988899999999988743211 1135688888898888732    33444455554

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=0.13  Score=41.17  Aligned_cols=68  Identities=29%  Similarity=0.473  Sum_probs=48.8

Q ss_pred             HHHhhcCCCCCCeeEEcC-CCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhcccc----ceeecCCceeEE
Q 046676           75 TFDLVDDTSLDPIISWGS-TGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYG----FRKIDTDRWEFA  142 (487)
Q Consensus        75 Ly~mVedp~~~~IIsWs~-~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YG----FrKv~~d~~eF~  142 (487)
                      |.++|+|+++.++|+|.. ++.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-    .+||...+..|.
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY~~~il~Kv~g~rl~Y~   80 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYK   80 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHHTTTSEEECTTSTTEEE
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcccEeeccCcEEEEE
Confidence            457788999999999998 68899999999998843211 112467889999987773    345555555543

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.088  Score=46.28  Aligned_cols=77  Identities=22%  Similarity=0.388  Sum_probs=57.2

Q ss_pred             HHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhcccc----ceeecCCceeEEcccccc
Q 046676           74 KTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYG----FRKIDTDRWEFANEAFQR  148 (487)
Q Consensus        74 KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YG----FrKv~~d~~eF~h~~F~R  148 (487)
                      -|.++|.|+++.++|+|...+.-|.+.|+++.++.---+ -=..-||..+-|-|..|-    .+||...+.+|.   |..
T Consensus         9 FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk---F~~   85 (155)
T d1hbxg_           9 FLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK---FVS   85 (155)
T ss_dssp             HTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE---ESS
T ss_pred             HHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE---ecC
Confidence            456889999999999999888899999999999853221 113468999999998873    356666777776   443


Q ss_pred             Cchhhh
Q 046676          149 GRRHLL  154 (487)
Q Consensus       149 g~p~LL  154 (487)
                       .|+.|
T Consensus        86 -~p~~l   90 (155)
T d1hbxg_          86 -YPEIL   90 (155)
T ss_dssp             -TTGGG
T ss_pred             -CHHHh
Confidence             35554

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.60  E-value=0.13  Score=44.62  Aligned_cols=75  Identities=27%  Similarity=0.366  Sum_probs=54.1

Q ss_pred             CChhHHHHHHhhcCCCCCCeeEEcCCCCeEEEeCCchhhhhhcCC-CCCCCChhhHHhhhcccc----ceeecCCceeEE
Q 046676           68 IPPFLAKTFDLVDDTSLDPIISWGSTGESFVVWDPLEFSRLILPR-NFKHNNFSSFVRQLNTYG----FRKIDTDRWEFA  142 (487)
Q Consensus        68 ~p~Fl~KLy~mVedp~~~~IIsWs~~G~sFvI~d~~~F~k~VLPk-yFKh~nfsSFvRQLN~YG----FrKv~~d~~eF~  142 (487)
                      ...--.-|.++|.|+++.++|+|...+..|.+.|+++.++.---+ -=..-||..+-|-|..|-    .+||...+..|.
T Consensus        39 ~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv~g~rl~Yk  118 (142)
T d1gvja_          39 PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR  118 (142)
T ss_dssp             SCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEEE
T ss_pred             eeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEecCCcEEEEe
Confidence            334555677899999999999999888889999999998743211 112467888889888773    245555555554