Citrus Sinensis ID: 046684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
Protein Sequence
MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACILNK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccHHHHHHHccccccHHHHccccHHHHHHccccccEEEEEEccccccEEEEEcccccccccccccccccccEEEEEcccEEEEcccccccEEEEEEccccccEEEcccccccccccEEEEEEEccccccccccEEEEEEcccccccccccccccEEEEEccccccEEEEcccccccEEEcccccccEEEEEccEEEEEEcccccEEEEEEccccEEEEEcccccccccccEEEEEccEEEEEEEEccccEEEEEEEcccccccEEEEEEEcHHHHHHccccccccccEEEEEcccEEEEEEEccccEEEEEEcccccEEEEEEcccccccccccccEEcccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cHcHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccEEEEcccccccccccccccccccEEEEEcccEEEEEcccccccEEEEEccccHHHcccccccccccccEEEEEEEccccccEEEEEEEEEEcccccccccccccccEEEEEcccccEEEccccccccccccccccccccEEEEccEEEEEEcccccEEEEEEcccccEEEEccccccccccccEEEEccEEEEEEEEccccEEEEEEcccccccEEEEHHHccHHHHHHHHcccccccEEEEEcccEEEEEEEcccccEEEEEEEEcccccEEEEccccccccccccccEEEEEEcccccEEHHHcccc
Coil and Loop (DISEMBL)
MWSNLHLDVLANIFsflspdslARAKSVcshwhtcaklyhlhsvsqhrrpawflalptrnrglccyvhnpvsdkwhvlsldflpypvrpvssigsflllrpinsTILQLVlcnpftrqfrylpllnvsrtnpavgivmegpaqhgpfpnfriyvaggmsdeprggatYESMVEMYDSRHDAWQIIGSMPVEFAVRLTvwtpnesvctrGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQkltliggtcggDACVWElseggdddiwCLIEKvpiemgmrlsggkaswggtrcaagngAICLYREVGLGMIIwrededkrKWEWVWVggccltggkqvqnvpmrgvllhpslacacilnk
Flexible Loop (DISEMBL)
MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLhpslacacilnk
Low Complexity Region (SEG)
MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACILNK
Disordered region (IsUnstruct)
***NLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGM*******ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACIL**
Disordered Region (DISOPRED)
MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACIL**
Disordered Region (DISEMBL)
MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACILNK
Disordered Region (DISPRO)
MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACILNK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACILNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	373	2.2.26 [Sep-21-2011]
Q9FZK1	467	F-box only protein 6 OS=A	yes	no	0.900	0.719	0.213	5e-10
Q39090	442	Protein UNUSUAL FLORAL OR	no	no	0.847	0.714	0.193	8e-10
Q9FGY4	359	F-box protein At5g49610 O	no	no	0.600	0.623	0.273	3e-09
Q9LFV5	448	F-box/kelch-repeat protei	no	no	0.828	0.689	0.217	4e-09
Q9SFC7	417	F-box protein At3g07870 O	no	no	0.772	0.690	0.215	4e-05
O49624	402	Putative F-box protein At	no	no	0.300	0.278	0.304	0.0002
Q9LUJ6	383	Putative F-box protein At	no	no	0.321	0.313	0.209	0.0004
O49647	396	Putative F-box protein At	no	no	0.367	0.345	0.277	0.0005
O49279	374	SKP1-interacting partner	no	no	0.316	0.315	0.282	0.0006

>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/375 (21%), Positives = 147/375 (39%), Gaps = 39/375 (10%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTC--AKLYHLHSVSQHRRPAWFLALPT 58
           +W     D+  ++ S L   +  + ++VC  W+    +  +        +   WF  +  
Sbjct: 116 IWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITH 175

Query: 59  RNRGLCCYVHNPVSDKWHVLSLDFLPYP--VRPVSSIGSFLLLRPINSTILQLVLCNPFT 116
            N      V++P   KWH   +  LP    V P++S G  +    I        + NP T
Sbjct: 176 ENVN-SGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHR--NFYVSNPLT 232

Query: 117 RQFRYLPLLNVSR-TNPAVGIVMEGPA-QHGPFPNFRIYVAGGMSDEPRGGATYESMVEM 174
           + FR LP  +    +  AVG+ + G +  HG    +++   G            E   E+
Sbjct: 233 KSFRELPARSFKVWSRVAVGMTLNGNSTSHG----YKVLWVGC-----------EGEYEV 277

Query: 175 YDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRE 234
           YDS  + W   G++P    + + +   ++ V     LY++ +     ++ +D+ S  W++
Sbjct: 278 YDSLSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFMLTD-PEGILSYDMVSGKWKQ 336

Query: 235 LSAPMADRLEFATLVSRNQKLTLIGGTCGGDA---CVWELSEGGDDDIWCLIEKVPIEMG 291
              P    L   TL +  ++L L+G      A   C+WEL +     +W  ++++P    
Sbjct: 337 FIIPGPPDLSDHTLAACGERLMLVGLLTKNAATCVCIWELQKM--TLLWKEVDRMPNIWC 394

Query: 292 MRLSGGKASWGGTRCAAGNGAICL--YREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGK 349
           +   G         C    G + L   R   +  +I      +   EW  V GC +  G+
Sbjct: 395 LEFYGKHIR---MNCLGNKGCLILLSLRSRQMNRLITYNAVTR---EWTKVPGCTVPRGR 448

Query: 350 QVQNVPMRGVLLHPS 364
           +   +   G   HPS
Sbjct: 449 KRLWIAC-GTAFHPS 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 73/377 (19%), Positives = 135/377 (35%), Gaps = 61/377 (16%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRN 60
           +WS L   +L  + +FL P +  R + VC  +++          S      +   LP R+
Sbjct: 46  IWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLL-------FSNTFLETYLQLLPLRH 98

Query: 61  RGLCCYVH--------------------------NPVSDKWHVLSLDFLPYPVRPVSSIG 94
                + H                          +P   +W+ LS  ++P    P  S G
Sbjct: 99  NCFLFFKHKTLKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAYIPSGFYPSGSSG 158

Query: 95  SFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYV 154
             +      + +  ++LCNP       LP ++  R  P++G+ +   +         + V
Sbjct: 159 GLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTS-------IDVTV 211

Query: 155 AGGMSDEPRGGATYESMVEMYDS--RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLY 212
           AG     P       S     D+      W +  S+P     RL      + V  +G  Y
Sbjct: 212 AGDDLISPYAVKNLSSESFHVDAGGFFSLWAMTSSLP-----RLCSLESGKMVYVQGKFY 266

Query: 213 WITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACV---- 268
            +  +  +SV+ +++  N W ++ APM   L   +L+    +L L+         V    
Sbjct: 267 CMNYS-PFSVLSYEVTGNRWIKIQAPMRRFLRSPSLLESKGRLILVAAVEKSKLNVPKSL 325

Query: 269 --WELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIW 326
             W L +  D+  W  IE++P  +  + +  +   G          + + R   L ++  
Sbjct: 326 RLWSLQQ--DNATWVEIERMPQPLYTQFAAEEGGKGFECVGNQEFVMIVLRGTSLQLLF- 382

Query: 327 REDEDKRKWEWVWVGGC 343
               D  +  W+WV  C
Sbjct: 383 ----DIVRKSWLWVPPC 395

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Considered as a meristem identity factor required for normal growth of the young floral meristem. Acts together with LEAFY to positively regulate the B class floral homeotic genes APETALA3 and PISTILLATA. In this way, operates as a region-specific regulator for petal and stamen development. Alternatively, may play a role as a negative regulator of the C class floral homeotic genes. Interacts together with the SKP1-like protein ASK1 to form a ubiquitin E3 ligase complex and could indirectly promote the ubiquitination and degradation of specific proteins controlling the floral primordia development like repressors of B class floral homeotic genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 21/245 (8%)

Query: 8   DVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHR--RPAWFLALPTRNRGLCC 65
           +V+  I + L   SL R KSVC  W+      +  S+      +    +A  + +  L C
Sbjct: 12  EVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLVAEVSDSSSLIC 71

Query: 66  YVH-NPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPL 124
             +   VS+    LSLDF+   VR   S    L    I    +  V CNP TR++R LP 
Sbjct: 72  VDNLRGVSE----LSLDFVRDRVRIRVSSNGLLCCSSIPEKGVYYV-CNPSTREYRKLPK 126

Query: 125 LN---VSRTNPAVGIVMEGPAQHGPFPNFRIYVAG---GMSDEPRGGATYESMVEMYDSR 178
                V+R  P     + G A       F + +AG        P G      +  ++DS 
Sbjct: 127 SRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSF----ICLVFDSE 182

Query: 179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAP 238
            + W+   S+  E +   T  + N+ V   GML+W+ S   Y ++  D+E + WR++S P
Sbjct: 183 SNKWRKFVSVLEECS--FTHMSKNQVVFVNGMLHWLMSGLCY-ILALDVEHDVWRKISLP 239

Query: 239 MADRL 243
              R+
Sbjct: 240 DEIRI 244

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 133/363 (36%), Gaps = 54/363 (14%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAK---LYHLHSVSQHRRPAWFLALP 57
           +W+ L  D+L  I + + P  + R +SVC  W+   +       HS      P       
Sbjct: 103 IWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWK 162

Query: 58  TRNRGLCCYVHNPVSDKWHVLSLDFL-PYPVRPVSSIGSFLLLRPINSTILQLVLCNPFT 116
              +   C V +     W+ +   FL P+    V S G  +    ++    + ++CNP  
Sbjct: 163 NSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLVCNPLM 222

Query: 117 RQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176
           + +R LP ++ ++    + +V              IY   G    P          E+YD
Sbjct: 223 QSWRTLPSMHYNQQRQLIMVVDRSDKSFKVIATSDIY---GDKSLP---------TEVYD 270

Query: 177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLY-----WITSARAYSVIGFDIESNT 231
           S+ D W +   MP   AV L         C+  M Y     ++ +     ++ + ++S  
Sbjct: 271 SKTDKWSLHQIMP---AVNL---------CSSKMAYCDSRLYLETLSPLGLMMYRLDSGQ 318

Query: 232 WRELSAPMADRLEFATLVSRNQKLTLIGGTCG-----GDACVWELSEGGDDDIWCLIEKV 286
           W  + A     L    LV+  QK   + G  G         +WEL        W  I ++
Sbjct: 319 WEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHTKVS--WVEISRM 376

Query: 287 P---IEMGMRLSGGKASWGGTRCAAGNGAICLYR-EVGLGMIIWREDEDKRKWEWVWVGG 342
           P       +RLS  +       C   +  IC      G G++    + DK+ W   W+ G
Sbjct: 377 PPKYFRALLRLSAERF-----ECFGQDNLICFTSWNQGKGLLY---NVDKKIWS--WISG 426

Query: 343 CCL 345
           C L
Sbjct: 427 CAL 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 129/358 (36%), Gaps = 70/358 (19%)

Query: 8   DVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYV 67
           D++A+IFS L   S+AR   VC  W +         ++QH R +   + PT+    C  +
Sbjct: 31  DIIADIFSRLPISSIARLMFVCRSWRSV--------LTQHGRLSSSSSSPTKP---CLLL 79

Query: 68  H--NPVSDKWHVLSL-------DFLPYPVRPVSSIGSFLLLRPINSTIL--------QLV 110
           H  +P+ +  H L L           + +R  SS+  F ++   N  +          L 
Sbjct: 80  HCDSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLY 139

Query: 111 LCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRI-YVAGGMSDEP-----RG 164
           L NPFT     LP  +    +  +            +   +I Y  G  S+       RG
Sbjct: 140 LYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRG 199

Query: 165 GATYE-------SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA 217
              Y+       ++      +  +W+ +G  P +F  R      +      G L+++T  
Sbjct: 200 RIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKR------SSEALVNGRLHFVTRP 253

Query: 218 RAY----SVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE 273
           R +      + FD+E   ++E+  P     +   L   N +L  + G      C      
Sbjct: 254 RRHVPDRKFVSFDLEDEEFKEIPKP-----DCGGLNRTNHRLVNLKGCL----CAVVYGN 304

Query: 274 GGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDED 331
            G  DIW           M+  G K SWG            L + +   M IW+  E+
Sbjct: 305 YGKLDIWV----------MKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAEN 352

Arabidopsis thaliana (taxid: 3702)

>sp|O49624|FB242_ARATH Putative F-box protein At4g22180 OS=Arabidopsis thaliana GN=At4g22180 PE=4 SV=3

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 2   WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNR 61
           WS L LD+L  +F  LS  +  RAKSVCS WH+ ++       S   +  W +  P  + 
Sbjct: 21  WSELPLDLLTAVFERLSYANFQRAKSVCSSWHSGSRQ------SVPIQIPWLILFPEYDN 74

Query: 62  GLCCYVHNPVSDKWHVLSLDFLPYPVRP---VSSIGSFLLLRPINSTILQLVLCNPFTRQ 118
              C + NP  +K  V  +  L          ++ GS+LL+R     +  L + N FT +
Sbjct: 75  NNSCTLFNP-EEKGQVYKMKDLGVEFSKSVCTATYGSWLLMR---DPLYNLYILNLFTHE 130

Query: 119 FRYLP 123
              LP
Sbjct: 131 RVNLP 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUJ6|FB176_ARATH Putative F-box protein At3g22650 OS=Arabidopsis thaliana GN=At3g22650 PE=4 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 9/129 (6%)

Query: 108 QLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT 167
           +L + NPF  + +++  ++   +N   G   +   +   +   RI+  G + DE     +
Sbjct: 114 KLAVWNPFLSRVKWIEPMDFYSSNDFYGFGYDNVCR-DEYKLLRIF-DGEIEDESEIAGS 171

Query: 168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWI---TSARAYSVIG 224
           YE  +++YD + D+W+I+    +++++      P + V  +G +YWI    +     +  
Sbjct: 172 YEPKIQIYDFKSDSWRIVDDTRLDWSID----PPCKGVSVKGNMYWIAHWNNRPEIFIQS 227

Query: 225 FDIESNTWR 233
           FD  + T++
Sbjct: 228 FDFSTETFK 236

Arabidopsis thaliana (taxid: 3702)

>sp|O49647|FB246_ARATH Putative F-box protein At4g22660 OS=Arabidopsis thaliana GN=At4g22660 PE=4 SV=1

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 2   WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALP---T 58
           WS+L LD+L  +F  LS  +  +AKSVCS W++ +K     SV +++ P W +  P    
Sbjct: 10  WSDLPLDLLNLVFKRLSFANFRQAKSVCSSWYSASK----QSVPKNQIP-WLMLFPKDKN 64

Query: 59  RNRGLCCYVHNPVSDKWHVLSLDFLPYPVRP---VSSIGSFLLLRPINSTILQLVLCNPF 115
            N+   C +     DK  +     L         +++ GS+LL++    +   L + NPF
Sbjct: 65  NNKNSSCTIFFNPEDKDQLYQTQDLGVEFAKSVCLATYGSWLLMQ---DSKYNLYILNPF 121

Query: 116 TRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNF 150
           T +   LP +   +    VG+V         F  F
Sbjct: 122 TYEKIGLPAIESQQ----VGMVKVDQTIDDDFLTF 152

Arabidopsis thaliana (taxid: 3702)

>sp|O49279|SKI15_ARATH SKP1-interacting partner 15 OS=Arabidopsis thaliana GN=SKIP15 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 20/138 (14%)

Query: 8   DVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALP---------- 57
           D L  IFS L    +   +SVC  ++          +   R P   LAL           
Sbjct: 12  DSLHQIFSSLPIRDIMICRSVCKFFNQLLTSQCFIEIISTRPPLNLLALRPPHHHHSHRH 71

Query: 58  -----TRNRGLCCYVHNPVSDKWHVLSLDFLPY-PVRPVSSIGSFLLL----RPINSTIL 107
                  N     +V++P  ++W   +LDFLP+   +PV+S    + L      +  +  
Sbjct: 72  SGNGHATNIRPYIHVYDPEQNQWFRFNLDFLPFRSPQPVASSSGLIYLWGDSIDLAESSK 131

Query: 108 QLVLCNPFTRQFRYLPLL 125
            LV CNP TRQF+ LP L
Sbjct: 132 SLVACNPLTRQFKVLPQL 149

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
255553113	367	ubiquitin-protein ligase, putative [Rici	0.975	0.991	0.631	1e-140
224073740	375	predicted protein [Populus trichocarpa]	0.991	0.986	0.621	1e-139
359482327	369	PREDICTED: F-box/kelch-repeat protein At	0.981	0.991	0.609	1e-129
449469002	372	PREDICTED: protein UNUSUAL FLORAL ORGANS	0.970	0.973	0.593	1e-128
356522353	369	PREDICTED: F-box only protein 6-like [Gl	0.959	0.970	0.606	1e-120
168006372	394	predicted protein [Physcomitrella patens	0.938	0.888	0.302	2e-38
168067692	395	predicted protein [Physcomitrella patens	0.941	0.888	0.291	2e-37
302820383	380	hypothetical protein SELMODRAFT_272238 [	0.932	0.915	0.289	2e-33
168028433	330	predicted protein [Physcomitrella patens	0.831	0.939	0.268	6e-22
168002649	362	predicted protein [Physcomitrella patens	0.831	0.856	0.268	8e-22

>gi|255553113|ref|XP_002517599.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223543231|gb|EEF44763.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/374 (63%), Positives = 295/374 (78%), Gaps = 10/374 (2%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQ--HRRPAWFLALPT 58
           MWS+L  D+LANIFSFLSPDSLARA+S C HWHTC   Y L       H  P WF+ALPT
Sbjct: 1   MWSSLPFDLLANIFSFLSPDSLARARSACRHWHTCVDAYPLSLAPSMLHHHPPWFVALPT 60

Query: 59  RNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ 118
           RNR  CCYVHNPV+ +WH+LSL+FL  P RP++ I   +LL+   STIL L +CNPFTRQ
Sbjct: 61  RNREPCCYVHNPVTKRWHMLSLEFLSDPFRPITCISGLILLKATKSTILSLAMCNPFTRQ 120

Query: 119 FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR 178
           FR+LPLLN++RTNPAVG+V+   +QH     FR+YVAGGMS+  RGGATYE  +EMYDSR
Sbjct: 121 FRHLPLLNIARTNPAVGVVILNSSQH-----FRVYVAGGMSEASRGGATYEPTLEMYDSR 175

Query: 179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAP 238
           H+ W+I GSMPVEFAVRLTVW+PNESV + G+LYWITSARA+S++ F+IESN W+E+S P
Sbjct: 176 HNTWKIAGSMPVEFAVRLTVWSPNESVYSNGILYWITSARAFSMMAFEIESNKWQEVSVP 235

Query: 239 MADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGK 298
           MADRLEFATLV R+ +LTL+G T GG+A VW+L++G   DIWCLIEKVP+E+G++L  GK
Sbjct: 236 MADRLEFATLVQRSGRLTLVGSTGGGEAFVWKLNKG---DIWCLIEKVPVELGVKLLRGK 292

Query: 299 ASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRG 358
           ASWG  +C  G GAICLYR++G GM++WRE  +K KWEW+WV GCC   GKQV+N+ +RG
Sbjct: 293 ASWGSIKCVGGEGAICLYRDLGSGMLVWREVREKGKWEWLWVEGCCSINGKQVENISVRG 352

Query: 359 VLLHPSLACACILN 372
           +L+HP+LA +C  +
Sbjct: 353 LLIHPNLASSCAFS 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073740|ref|XP_002304150.1| predicted protein [Populus trichocarpa] gi|222841582|gb|EEE79129.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/375 (62%), Positives = 296/375 (78%), Gaps = 5/375 (1%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRR--PAWFLALPT 58
           MW+ L  ++LANIFSFLSPDSLARAK+ C +W TCA  Y L + +   R   AWF+ALPT
Sbjct: 1   MWNRLPSELLANIFSFLSPDSLARAKTACRYWRTCANSYPLSTAASMVRHHQAWFVALPT 60

Query: 59  RNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ 118
           R+RGLCCY+HNP  DKWHVLSLDF P+P RP++SIGS +L RP +ST LQL + NPFT++
Sbjct: 61  RSRGLCCYLHNPNIDKWHVLSLDFQPHPTRPIASIGSLILSRPTDSTTLQLAISNPFTKE 120

Query: 119 FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR 178
           FR  P+L ++RTNPAVG+V+ GPAQHGP  +FR+YVAGGMS+ PRG ATYE  +E+YDS 
Sbjct: 121 FRCFPMLKIARTNPAVGVVILGPAQHGPSLHFRVYVAGGMSEAPRGAATYEPTMEVYDSE 180

Query: 179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAP 238
            DAW+I+GS+PVEFAVRLTVWTPNESV ++G+LYW+TSARAYS++GF+  SN W+ELS  
Sbjct: 181 DDAWRIVGSVPVEFAVRLTVWTPNESVYSKGVLYWMTSARAYSIMGFEFRSNKWQELSVH 240

Query: 239 MADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGK 298
           MAD+LEFATL   N +LTL+GGT GGDACVWEL E      WCL EK+P+E+  +L GGK
Sbjct: 241 MADKLEFATLAQLNGRLTLVGGTSGGDACVWELDE---RHAWCLKEKMPVELTRKLLGGK 297

Query: 299 ASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRG 358
           ASW  T+C  G+GAICLYR++G GM +WR+  ++ +WEW WV GCC   GK+VQN+P++G
Sbjct: 298 ASWATTKCVRGDGAICLYRDLGSGMAVWRKVGERGRWEWFWVEGCCSIKGKRVQNLPIKG 357

Query: 359 VLLHPSLACACILNK 373
           VL+ P+LA +C  +K
Sbjct: 358 VLIPPNLAPSCAFSK 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482327|ref|XP_003632755.1| PREDICTED: F-box/kelch-repeat protein At3g61590-like [Vitis vinifera]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/376 (60%), Positives = 280/376 (74%), Gaps = 10/376 (2%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRN 60
           MWSNL  D+LANIFSFL  DSLA A SVC HWHTC   Y   + +  R P WF+ALP RN
Sbjct: 1   MWSNLPFDLLANIFSFLPADSLALASSVCKHWHTCVTAYP-ATAAGARNPPWFVALPVRN 59

Query: 61  RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFR 120
           RG  CY HNP+ D WH L L FLP+ +RPV+SIG  +LLR   ST LQL +CN FT+++ 
Sbjct: 60  RGHTCYTHNPIIDTWHGLFLGFLPHAIRPVASIGGLVLLRSTTSTTLQLAICNLFTKRYW 119

Query: 121 YLPLLNVSRTNPAVGIVM---EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDS 177
            LP+LN++RTNPAVG+V    E P     F +FR+YVAGGMS+ P GGA YE  +EMYDS
Sbjct: 120 SLPMLNIARTNPAVGVVFGLDESPDVR--FSSFRVYVAGGMSEAPSGGAAYEPTLEMYDS 177

Query: 178 RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSA 237
             D W I+G MPVEFAVRLTVW+PNESV + G+LYW+TSARAYSV+G DIESN+WRELS 
Sbjct: 178 WQDRWDIMGRMPVEFAVRLTVWSPNESVYSGGVLYWMTSARAYSVMGLDIESNSWRELSV 237

Query: 238 PMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG 297
           PMA+RLEFA LV  N + TL+GGTC   AC+WEL EG   D W L+EK+PIE+GMRL G 
Sbjct: 238 PMAERLEFAALVRWNGRPTLVGGTCNEGACIWELGEG---DTWGLVEKIPIELGMRLLGV 294

Query: 298 KASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMR 357
           K SW  T+C   +GA+CLYR++G GM++WRE E K +WEW+WV GCC  GGKQVQN+P++
Sbjct: 295 KGSWESTKCVGSDGALCLYRDLGSGMVVWREVE-KGRWEWLWVEGCCSVGGKQVQNIPIK 353

Query: 358 GVLLHPSLACACILNK 373
           G+LLHP+LA +   +K
Sbjct: 354 GLLLHPNLATSGFPDK 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469002|ref|XP_004152210.1| PREDICTED: protein UNUSUAL FLORAL ORGANS-like [Cucumis sativus] gi|449484183|ref|XP_004156809.1| PREDICTED: protein UNUSUAL FLORAL ORGANS-like [Cucumis sativus]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/369 (59%), Positives = 279/369 (75%), Gaps = 7/369 (1%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS--VSQHRRPAWFLALPT 58
           MWS+L  D+LANIFSFLSPDSLARA+S C  WH C     L++  +     P+WF+ALP 
Sbjct: 1   MWSSLPFDLLANIFSFLSPDSLARARSACKQWHECIDTCPLNTEPILSQSHPSWFIALPL 60

Query: 59  RNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ 118
           R   LC + HNP+ D WH LSL+FLP  V+P++++GS L LR  +S +LQL+LCNPFT Q
Sbjct: 61  RAHKLC-FAHNPILDNWHKLSLEFLPDLVKPIATVGSLLFLRSTSSVVLQLILCNPFTTQ 119

Query: 119 FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR 178
           FRYLP  N+SRTNPAVG+V++   Q    P+F++YVAGGMS  P+GG TYES +EMYDSR
Sbjct: 120 FRYLPRPNISRTNPAVGVVIQNTRQDSQIPDFKVYVAGGMSVAPQGGTTYESKLEMYDSR 179

Query: 179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAP 238
           +D+W+I+GS+PVEFAVRLTVWT NESV + G+LYWITSARA+SV+GFDI+SN  REL  P
Sbjct: 180 NDSWEIVGSLPVEFAVRLTVWTHNESVYSNGILYWITSARAFSVMGFDIDSNNCRELQVP 239

Query: 239 MADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG- 297
           MADRLEFA L SRN +LT++GG CG DACVWE  +G   D+W L+EKVP E+G +L GG 
Sbjct: 240 MADRLEFAALTSRNGRLTIVGGVCGEDACVWECRDG---DVWVLVEKVPNELGRKLVGGS 296

Query: 298 KASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMR 357
             SW  ++CA  N  +CLY+E+G GM++WRE ++K  WEWVW+ GC    GK V N+P++
Sbjct: 297 NGSWINSKCAWNNEVMCLYKELGNGMVVWRERKEKNTWEWVWIDGCSSIRGKIVHNLPIK 356

Query: 358 GVLLHPSLA 366
           G+LL PSLA
Sbjct: 357 GLLLQPSLA 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522353|ref|XP_003529811.1| PREDICTED: F-box only protein 6-like [Glycine max]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/379 (60%), Positives = 283/379 (74%), Gaps = 21/379 (5%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRN 60
           +WSNL  D+LANIFSFLSPDSLARA+SVC +WHTC+K Y + + +     +WFLALP RN
Sbjct: 3   IWSNLPFDILANIFSFLSPDSLARARSVCKNWHTCSKAYRIATTTT---TSWFLALPIRN 59

Query: 61  RGLCCYVHNPVSDKWHVLSLDFLPYP-VRPVSSIGSFLLLRPINSTILQLVLCNPFTRQF 119
            G  CY HNPV DKWH LSL   P P +RP++ IGS LL R  NST LQL LCNPFTR+F
Sbjct: 60  HGPHCYAHNPVIDKWHQLSL---PIPSIRPIAPIGSLLLSRVTNSTTLQLGLCNPFTREF 116

Query: 120 RYLPLLNVSRTNPAVGIVM----EGPAQHGPFPNFRIYVAGGMSDEPRGG-ATYESMVEM 174
           R+LP L+V+RTNPAVG+V       P  +  FP+FR+YVAGGMS+  +GG ATYE+ VEM
Sbjct: 117 RHLPRLHVARTNPAVGVVTISESSNPNHNVRFPSFRVYVAGGMSEAAQGGGATYETKVEM 176

Query: 175 YDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRE 234
           YDSR D W+I+GS PVEFAVRLTVWTPNE+VC    LYW+TSARAYSV+GFD+  NTW E
Sbjct: 177 YDSRFDTWRIVGSTPVEFAVRLTVWTPNENVCIGETLYWVTSARAYSVMGFDVGRNTWSE 236

Query: 235 LSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRL 294
           L  PMA++LEFATLV RN  L L+GGTCGG AC+WEL+EG   D WCL++KVP+E+G+RL
Sbjct: 237 LGVPMAEKLEFATLVPRNGALGLVGGTCGGTACIWELNEG---DKWCLVDKVPLELGLRL 293

Query: 295 SGGKASWGGTRCAAGNGAICLYREVGLGMIIWRE--DEDKRKWEWVWVGGCCLTGGKQVQ 352
            GGK+     +C     AICLYR++G GM++ ++   E   +WEWVWV GC  T GKQV 
Sbjct: 294 LGGKS----VKCVGNEDAICLYRDLGYGMVLCKKVVGEIMGRWEWVWVDGCGYTKGKQVY 349

Query: 353 NVPMRGVLLHPSLACACIL 371
           N P+RG L+HPSLA + ++
Sbjct: 350 NCPIRGALVHPSLASSSLI 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168006372|ref|XP_001755883.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692813|gb|EDQ79168.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 182/374 (48%), Gaps = 24/374 (6%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAK---LYHLHSVSQHRRPAWFLALP 57
           +W  LH +++  I   L   +L   + V   W T  K      ++   + R P WF    
Sbjct: 32  IWGRLHGELVDRILLCLPIVNLYPLRCVSKSWDTTIKSTSFNRMYLEMESRGPPWFFMCS 91

Query: 58  TRNRGLCCYVHNPVSDKWHVLSLDFLPYPVR-PVSSIGSFLLLRPINSTILQLVLCNPFT 116
           + N       ++PV ++WH   L FLP  +R P++++   LL+R   +    L +CNP T
Sbjct: 92  SFNCRDNTSAYDPVQNRWHNFPLTFLPAHMRFPLTAVKGLLLVRGGITNAGMLAICNPIT 151

Query: 117 RQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176
           R +R LP +   R N  VG+  +         +++I VAGG       G  YE   E+YD
Sbjct: 152 RAWRELPPMIHKRLNSLVGVYEDKRTD-----SYKIVVAGGTCQ----GGEYECTTEVYD 202

Query: 177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELS 236
           S  ++WQ+ G++  EF VR+T WT +++V + G LY +TS R YS+I +D+++ TW E++
Sbjct: 203 SLTNSWQVTGNVCKEFTVRITWWT-SKTVFSDGALYCLTSGRPYSIIAYDLKTATWNEVA 261

Query: 237 APMADRLEFATLVSRNQKLTLIGGTCGGDAC----VWELSE-GGDDDIWCLIEKVPIEMG 291
            P  + L  + L+ R  +L L+GG      C     WEL +  G+   W  +EK+P E  
Sbjct: 262 VPPPEFLSCSFLIQRRNRLFLVGGIGPERTCEHIYFWELKQVKGEKKQWVEVEKMPHEYF 321

Query: 292 MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQV 351
                 KAS    +CA     +  Y++    +++   D  K + EW W+  C L+     
Sbjct: 322 QVFFKDKAS-SDLKCAGHGDLVYFYKDSHTQVLLC--DFSKTRTEWRWLPKCPLS--MSF 376

Query: 352 QNVPMRGVLLHPSL 365
                RG+ L P+L
Sbjct: 377 LKFSTRGLFLDPTL 390

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168067692|ref|XP_001785743.1| predicted protein [Physcomitrella patens subsp. patens] gi|162662618|gb|EDQ49449.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 184/374 (49%), Gaps = 23/374 (6%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAK---LYHLHSVSQHRRPAWFLALP 57
           +W  LH +++  I   L   +L   + V   W T  K      ++     R P+W     
Sbjct: 32  IWGRLHGELVDRILLCLPIANLYSLRCVSKSWDTTIKSTSFNRMYLEKASRGPSWLFMCS 91

Query: 58  TRNRGLCCYVHNPVSDKWHVLSLDFLPYPVR-PVSSIGSFLLLRPINSTILQLVLCNPFT 116
           + N       ++PV ++WH   L FLP  +R P++++G  L +R   +    LV+CNP T
Sbjct: 92  SFNCRDFTSAYDPVQNRWHNFPLTFLPSCMRFPLTAVGGRLFVRGGLTNAGVLVVCNPMT 151

Query: 117 RQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176
           R +R LP +   R N  VG+  +  ++     +++I VAGG S+    G  YE   E+YD
Sbjct: 152 RSWRVLPPMIHRRLNSLVGVYEDKRSK-----SYKIVVAGGTSE---SGGEYECTTEVYD 203

Query: 177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELS 236
           S  ++W++ G +  E  VR+T WT     C  G+LY +TS R YSVI +D+++ TW E++
Sbjct: 204 SLSNSWKVTGKVRREITVRITWWTSKTVFCN-GVLYCLTSGRPYSVIAYDLKTATWDEVA 262

Query: 237 APMADRLEFATLVSRNQKLTLIGGTCGGDAC----VWELSE-GGDDDIWCLIEKVPIEMG 291
            P  + L    L+ R  +L L+GG      C    +WEL +  G+   W  +EK+P E  
Sbjct: 263 VPPPEFLFCTFLIQRRNRLFLVGGAGTERICEHVHMWELKQVDGEGKQWVEVEKMPHEY- 321

Query: 292 MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQV 351
            ++   + +    +C+     +  Y++    +++   D  K++ EW W+  C L+     
Sbjct: 322 FQIFFKERTATDLKCSGHGDLVYFYKDSHTQVLVC--DFSKKQTEWRWLPKCPLS--MNF 377

Query: 352 QNVPMRGVLLHPSL 365
               +RG+ L P+L
Sbjct: 378 LKFSIRGLFLDPTL 391

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302820383|ref|XP_002991859.1| hypothetical protein SELMODRAFT_272238 [Selaginella moellendorffii] gi|302822725|ref|XP_002993019.1| hypothetical protein SELMODRAFT_270004 [Selaginella moellendorffii] gi|300139219|gb|EFJ05965.1| hypothetical protein SELMODRAFT_270004 [Selaginella moellendorffii] gi|300140397|gb|EFJ07121.1| hypothetical protein SELMODRAFT_272238 [Selaginella moellendorffii]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 179/373 (47%), Gaps = 25/373 (6%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQH---RRPAWFLALP 57
           +W +L  D++  +F+F+  +SL  A  VC  W++  K  +   V +    R   W LA  
Sbjct: 21  LWHSLPEDIMDKVFAFMPIESLVAAGLVCKSWNSRIKSSNFQRVYRSTPAREAPWLLACS 80

Query: 58  TRNRGLCCYVHNPVSDKWHVLSLDFLPYPVR-PVSSIGSFLLLRPINSTILQLVLCNPFT 116
              R   C   +P  +KW  +SL FLP  +R P+++IG  + +R   S +  L +CNP  
Sbjct: 81  YNCRDKSC-AFSPTLNKWLNVSLAFLPPYMRFPLAAIGGLIFMRAGLSNLGMLAVCNPIM 139

Query: 117 RQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176
           + ++ LP +   R N  VG+      Q      +RI VAGG S+    G  YE   E+YD
Sbjct: 140 QTWKELPQMTYKRFNSLVGVF-----QVDDSSGYRIIVAGGTSE---CGGDYECSTEIYD 191

Query: 177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELS 236
           SR D+W ++G++P  + V++TVWT     C +G LY +TSAR Y+++ +++ +  W E+ 
Sbjct: 192 SRTDSWTVLGAIPRYYTVKITVWTSKTVFC-QGTLYCLTSARPYNLMSYNLGTRLWSEMK 250

Query: 237 APMADRLEFATLVSRNQKLTLIGGTCGGDAC----VWELSEGGDDDIWCLIEKVPIEMGM 292
            P    L  + L+ R +KL L+GG      C    +WEL    +   W   +++P     
Sbjct: 251 VPRPACLYSSFLLKRKEKLLLVGGVGTDRVCERIHLWELQV--ESQQWLDKDQMPQHYFQ 308

Query: 293 RLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQ 352
                K  +   +CA     I  ++    GM++         W+W+     C      ++
Sbjct: 309 MFYESKGDF-DLKCAGSGDLIYFFKSSHSGMLVCDLSTTPASWQWL---PSCPFSNHDIK 364

Query: 353 NVPMRGVLLHPSL 365
              +RG+ L+P L
Sbjct: 365 -FALRGLFLNPRL 376

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168028433|ref|XP_001766732.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681941|gb|EDQ68363.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 37/347 (10%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPA---WFLALP 57
           +W +L  D+   I ++L   + ARA +VC  W++    +    + Q R P+    FL   
Sbjct: 9   LWGSLPEDLQDRILAWLPFTAFARASTVCKRWNSVMYSHSFLEMYQ-RVPSPEPCFLMFE 67

Query: 58  TRNRGLCCYVHNPVSDKWHVLSLDFLPYPVR-PVSSIGSFLLLRPINSTILQLVLCNPFT 116
            ++R +C  V+NP S++WH +   F  Y  + P ++ G  L    + S    L +CNP T
Sbjct: 68  AKDRSMCS-VYNPASNRWHRIPFTFFHYETKFPCAAAGGLLCFCGV-SAYPSLSVCNPLT 125

Query: 117 RQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176
           R++R LP +   R    VG+V+E   +      ++I VAG   ++           E+YD
Sbjct: 126 RRWRELPPMLHKRFPNLVGMVVEPQTR-----AYKIVVAGDYYED-------NVRTEVYD 173

Query: 177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELS 236
           S  + W+I G+      + +  +T   + C  G  +W+T    Y VI F+++   W  + 
Sbjct: 174 STSNTWRITGN-----HLPIANYTLRNAFCN-GFHFWVTRD-PYGVIAFNMQHGVWSVVR 226

Query: 237 APMADRLEFATLVSRNQKLTLIGG----TCGGDACVWELSEGGDDDIWCLIEKVPIEMGM 292
           APM   L    LV   ++L ++GG    T   +  +WEL +     +W  + ++P  +  
Sbjct: 227 APMPSFLTSPHLVGCQRRLLMVGGLKKRTSPKNIRIWELEQS--TMMWVEVVRMPHTLCK 284

Query: 293 RLSGGKASWGGTRCAAGNGAICLYR-EVGLGMIIWREDEDKRKWEWV 338
                  + G   C   N  IC+   +  L +I    D  KR W WV
Sbjct: 285 HFLKDSRN-GDFMCVGHNNLICITSYKCPLALIY---DFSKRSWRWV 327

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168002649|ref|XP_001754026.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695002|gb|EDQ81348.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 156/347 (44%), Gaps = 37/347 (10%)

Query: 1   MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRR----PAWFLAL 56
           +W +L  D+   I ++L   + ARA +VC  W++   +Y    +  +RR       FL  
Sbjct: 16  LWGSLPEDLQDRILAWLPFPAFARACTVCKRWNSV--MYSHSFLEMYRRVPSPEPCFLMF 73

Query: 57  PTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVR-PVSSIGSFLLLRPINSTILQLVLCNPF 115
             ++R +C  V+NP S++WH +   F  Y  + P ++ G  L    + S    L +CNP 
Sbjct: 74  EAKDRSMCS-VYNPASNRWHRIPFTFFHYETKFPCAAAGGLLCFCGV-SAYPSLSVCNPV 131

Query: 116 TRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMY 175
           TR++R LP +   R    VG+V++   +      ++I VAG   ++           E+Y
Sbjct: 132 TRRWRELPPMLHKRFPNLVGMVVDPQTR-----AYKIVVAGDYYED-------NVRTEVY 179

Query: 176 DSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWREL 235
           DS  + W+I G+      + +  +T   + C  G  +W+T    Y VI F+++   W  +
Sbjct: 180 DSTSNTWRITGN-----HLPIANYTLRNAFCN-GFHFWVTRD-PYGVIAFNMQHGVWSVV 232

Query: 236 SAPMADRLEFATLVSRNQKLTLIGG----TCGGDACVWELSEGGDDDIWCLIEKVPIEMG 291
            APM   L    LV   ++L ++GG        +  +WEL +   +  W  I ++P  + 
Sbjct: 233 RAPMPSFLTSPHLVGCQRRLLMVGGLKKHAIPKNIRIWELEQSTMN--WVEIVRMPHTLC 290

Query: 292 MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWV 338
            R      + G   C   N  ICL        +I+  D  KR W WV
Sbjct: 291 KRFLKDSRN-GDFMCVGHNDLICLTSYKCPHALIY--DFSKRSWRWV 334

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
TAIR|locus:2015974	467	LCR "AT1G27340" [Arabidopsis t	0.892	0.713	0.214	3.2e-11
TAIR|locus:2157834	359	AT5G49610 "AT5G49610" [Arabido	0.587	0.610	0.3	1.1e-09
TAIR|locus:2015766	442	UFO "AT1G30950" [Arabidopsis t	0.691	0.583	0.221	5.3e-09
TAIR|locus:2143256	448	AT5G15710 "AT5G15710" [Arabido	0.833	0.694	0.223	1.9e-08
TAIR|locus:2087323	383	AT3G24760 "AT3G24760" [Arabido	0.670	0.652	0.253	5.4e-05
TAIR|locus:2132035	402	AT4G22180 "AT4G22180" [Arabido	0.300	0.278	0.32	0.00021
TAIR|locus:2127595	396	AT4G22660 "AT4G22660" [Arabido	0.308	0.290	0.305	0.00045
TAIR|locus:2145447	397	AT5G25290 "AT5G25290" [Arabido	0.268	0.251	0.333	0.00045

TAIR|locus:2015974 LCR "AT1G27340" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 81/378 (21%), Positives = 148/378 (39%)

Query:     1 MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTC--AKLYHLHSVSQHRRPAWFLALPT 58
             +W     D+  ++ S L   +  + ++VC  W+    +  +        +   WF  +  
Sbjct:   116 IWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITH 175

Query:    59 RNRGLCCYVHNPVSDKWHVLSLDFLPYP--VRPVSSIGSFLLLRPINSTILQLVLCNPFT 116
              N      V++P   KWH   +  LP    V P++S G  +    I        + NP T
Sbjct:   176 ENVN-SGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHR--NFYVSNPLT 232

Query:   117 RQFRYLPLLNVSR-TNPAVGIVMEGPA-QHGPFPNFRIYVAGGMSDEPRGGATYESMVEM 174
             + FR LP  +    +  AVG+ + G +  HG    +++   G            E   E+
Sbjct:   233 KSFRELPARSFKVWSRVAVGMTLNGNSTSHG----YKVLWVG-----------CEGEYEV 277

Query:   175 YDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRE 234
             YDS  + W   G++P    + + +   ++ V     LY++ +     ++ +D+ S  W++
Sbjct:   278 YDSLSNVWTKRGTIPSNIKLPVLLNFKSQPVAIHSTLYFMLTDPE-GILSYDMVSGKWKQ 336

Query:   235 LSAPMADRLEFATLVSRNQKLTLIG------GTCGGDACVWELSEGGDDDIWCLIEKVPI 288
                P    L   TL +  ++L L+G       TC    C+WEL +     +W  ++++P 
Sbjct:   337 FIIPGPPDLSDHTLAACGERLMLVGLLTKNAATC---VCIWELQKM--TLLWKEVDRMPN 391

Query:   289 EMGMRLSGGKASWGGTRCAAGNGAICLY--REVGLGMIIWREDEDKRKWEWVWVGGCCLT 346
                +   G         C    G + L   R   +  +I      +   EW  V GC + 
Sbjct:   392 IWCLEFYGKHIRMN---CLGNKGCLILLSLRSRQMNRLITYNAVTR---EWTKVPGCTVP 445

Query:   347 GGKQVQNVPMRGVLLHPS 364
              G++   +   G   HPS
Sbjct:   446 RGRKRLWIAC-GTAFHPS 462

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010928 "regulation of auxin mediated signaling pathway" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 72/240 (30%), Positives = 109/240 (45%)

Query:     8 DVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHR--RPAWFLALPTRNRGLCC 65
             +V+  I + L   SL R KSVC  W+      +  S+      +    +A  + +  L C
Sbjct:    12 EVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLVAEVSDSSSLIC 71

Query:    66 YVHN--PVSDKWHVLSLDFLPYPVR-PVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYL 122
              V N   VS+    LSLDF+   VR  VSS G  L    I    +  V CNP TR++R L
Sbjct:    72 -VDNLRGVSE----LSLDFVRDRVRIRVSSNG-LLCCSSIPEKGVYYV-CNPSTREYRKL 124

Query:   123 PLLN---VSRTNPAVGIVMEGPAQHGPFPNFRIYVAG-GMSDEPRGGATYESMVEMYDSR 178
             P      V+R  P     + G A       F + +AG   S   R   ++  +V  +DS 
Sbjct:   125 PKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFICLV--FDSE 182

Query:   179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAP 238
              + W+   S+  E +   T  + N+ V   GML+W+ S   Y ++  D+E + WR++S P
Sbjct:   183 SNKWRKFVSVLEECS--FTHMSKNQVVFVNGMLHWLMSGLCY-ILALDVEHDVWRKISLP 239

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015766 UFO "AT1G30950" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
 Identities = 65/294 (22%), Positives = 117/294 (39%)

Query:    66 YVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLL 125
             ++ +P   +W+ LS  ++P    P  S G  +      + +  ++LCNP       LP +
Sbjct:   130 FLFDPNEIRWYRLSFAYIPSGFYPSGSSGGLVSWVSEEAGLKTILLCNPLVGSVSQLPPI 189

Query:   126 NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR--HDAWQ 183
             +  R  P++G+ +  P       +  + VAG     P       S     D+      W 
Sbjct:   190 SRPRLFPSIGLSVT-PT------SIDVTVAGDDLISPYAVKNLSSESFHVDAGGFFSLWA 242

Query:   184 IIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL 243
             +  S+P     RL      + V  +G  Y +  +  +SV+ +++  N W ++ APM   L
Sbjct:   243 MTSSLP-----RLCSLESGKMVYVQGKFYCMNYS-PFSVLSYEVTGNRWIKIQAPMRRFL 296

Query:   244 EFATLVSRNQKLTLIGGTCGGDACV------WELSEGGDDDIWCLIEKVPIEMGMRLS-- 295
                +L+    +L L+         V      W L +  D+  W  IE++P  +  + +  
Sbjct:   297 RSPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQ--DNATWVEIERMPQPLYTQFAAE 354

Query:   296 -GGKASWGGTRCAAGNGAICLY-REVGLGMIIWREDEDKRKWEWVWVGGCCLTG 347
              GGK    G  C      + +  R   L ++     +  RK  W+WV  C  +G
Sbjct:   355 EGGK----GFECVGNQEFVMIVLRGTSLQLLF----DIVRK-SWLWVPPCPYSG 399

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0000151 "ubiquitin ligase complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=RCA

TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 78/349 (22%), Positives = 132/349 (37%)

Query:     1 MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAK---LYHLHS-VSQHRRPAWFLAL 56
             +W+ L  D+L  I + + P  + R +SVC  W+   +       HS VS H  P      
Sbjct:   103 IWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHG-PCLLTFW 161

Query:    57 PTRNRGLCCYVHNPVSDKWHVLSLDFLP-YPVRPVSSIGSFLLLRPINSTILQLVLCNPF 115
                 +   C V +     W+ +   FLP +    V S G  +    ++    + ++CNP 
Sbjct:   162 KNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLVCNPL 221

Query:   116 TRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMY 175
              + +R LP ++ ++    + +V              IY   G    P          E+Y
Sbjct:   222 MQSWRTLPSMHYNQQRQLIMVVDRSDKSFKVIATSDIY---GDKSLP---------TEVY 269

Query:   176 DSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWREL 235
             DS+ D W +   MP   AV L   +   + C    LY + +     ++ + ++S  W  +
Sbjct:   270 DSKTDKWSLHQIMP---AVNLC--SSKMAYCD-SRLY-LETLSPLGLMMYRLDSGQWEHI 322

Query:   236 SAPMADRLEFATLVSRNQKLTLIGGTCG-----GDACVWELSEGGDDDIWCLIEKVPIEM 290
              A     L    LV+  QK   + G  G         +WEL        W  I ++P + 
Sbjct:   323 PAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHTKVS--WVEISRMPPKY 380

Query:   291 GMRLSGGKASWGGTRCAAGNGAICLYR-EVGLGMIIWREDEDKRKWEWV 338
                L   + S     C   +  IC      G G++    + DK+ W W+
Sbjct:   381 FRALL--RLSAERFECFGQDNLICFTSWNQGKGLLY---NVDKKIWSWI 424

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2087323 AT3G24760 "AT3G24760" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 72/284 (25%), Positives = 112/284 (39%)

Query:     2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNR 61
             ++NL++DV  +I   L   SL R   V   W +               P W       N 
Sbjct:    13 FNNLNIDVTESILYHLPIPSLVRFTLVSKQWRSLITSLPPSPSPSPSSPPWLFLFGIHNT 72

Query:    62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSS---IGS--FLLLRPINSTILQLVLCN-PF 115
                   HN  S  +  LS  +L  P    SS   +GS  FL       +   ++  N  F
Sbjct:    73 SS---FHNQ-SFAFDPLSNTWLRLPPSSSSSDHLVGSNRFLFTTAPRFSFSPILKPNWRF 128

Query:   116 TRQFRYL---PLLNVSRT-NPAVGIVMEGPAQHGPFPNFRIYVAGGMSD-EPRGGATYES 170
             T   R+    PLL V  T + +  +++ G +        RI   GG+ D E R       
Sbjct:   129 TSPVRFPRINPLLTVFTTLSNSSKLILVGGSS-------RI---GGLVDIEER------L 172

Query:   171 MVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN 230
              V++YD   D+W++   +P +F       T   ++  R   +++    +  +  F ++S 
Sbjct:   173 AVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRR--FYVFDNYSCFISSFCLDSY 230

Query:   231 TWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEG 274
             TW ++       L FA L S N  L L GG CG    +W + EG
Sbjct:   231 TWSDVQTLKPPGLSFAYLNSCNGMLVL-GGMCGFSFNLWSIEEG 273

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132035 AT4G22180 "AT4G22180" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
 Identities = 40/125 (32%), Positives = 59/125 (47%)

Query:     2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNR 61
             WS L LD+L  +F  LS  +  RAKSVCS WH+ ++     SV   + P W +  P  + 
Sbjct:    21 WSELPLDLLTAVFERLSYANFQRAKSVCSSWHSGSR----QSVPI-QIP-WLILFPEYDN 74

Query:    62 GLCCYVHNPVSDKWHVLSLDFLPYPVRP---VSSIGSFLLLRPINSTILQLVLCNPFTRQ 118
                C + NP  +K  V  +  L          ++ GS+LL+R     +  L + N FT +
Sbjct:    75 NNSCTLFNP-EEKGQVYKMKDLGVEFSKSVCTATYGSWLLMR---DPLYNLYILNLFTHE 130

Query:   119 FRYLP 123
                LP
Sbjct:   131 RVNLP 135

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127595 AT4G22660 "AT4G22660" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
 Identities = 40/131 (30%), Positives = 65/131 (49%)

Query:     2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALP---T 58
             WS+L LD+L  +F  LS  +  +AKSVCS W++ +K     SV +++ P W +  P    
Sbjct:    10 WSDLPLDLLNLVFKRLSFANFRQAKSVCSSWYSASK----QSVPKNQIP-WLMLFPKDKN 64

Query:    59 RNRGLCCYVH-NPVSDKWHVLSLDFLPYPVRP---VSSIGSFLLLRPINSTILQLVLCNP 114
              N+   C +  NP  DK  +     L         +++ GS+LL++    +   L + NP
Sbjct:    65 NNKNSSCTIFFNP-EDKDQLYQTQDLGVEFAKSVCLATYGSWLLMQ---DSKYNLYILNP 120

Query:   115 FTRQFRYLPLL 125
             FT +   LP +
Sbjct:   121 FTYEKIGLPAI 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2145447 AT5G25290 "AT5G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
 Identities = 37/111 (33%), Positives = 58/111 (52%)

Query:     1 MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRN 60
             +WS + +D+L ++F  LS   L RAK VCSHW++C+K   L      R P   L +   +
Sbjct:    13 LWSEIPMDILRSVFERLSFVDLHRAKIVCSHWYSCSKQSFLRKT---RSP---LVILFSD 66

Query:    61 RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRP-INSTILQL 109
              G C  ++NP   + +    D   Y  R +++ G+ FL+L P  N  I+ L
Sbjct:    67 DGDCT-LYNPEEARVYKSKRDLSRY--RFLANSGNWFLVLDPRSNLYIIDL 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.468    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      373       373   0.00087  117 3  11 22  0.49    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  630 (67 KB)
  Total size of DFA:  303 KB (2153 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.81u 0.10s 30.91t   Elapsed:  00:00:01
  Total cpu time:  30.81u 0.10s 30.91t   Elapsed:  00:00:01
  Start:  Thu May  9 18:39:06 2013   End:  Thu May  9 18:39:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III000309 hypothetical protein (375 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	373
smart00612	47	smart00612, Kelch, Kelch domain	2e-06
pfam00646	48	pfam00646, F-box, F-box domain	7e-06
pfam12937	47	pfam12937, F-box-like, F-box-like	2e-05
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	2e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	5e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.002

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 151 RIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPV 190
           +IYV GG       G      VE+YD   + W  + SMP 
Sbjct: 1   KIYVVGGFD-----GGQRLKSVEVYDPETNKWTPLPSMPT 35

Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 2  WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAK 37
            +L  D+L  I S L P  L R   V   W +   
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 2  WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCA 36
           S+L  ++L  IFS+L P  L R   VC  W   A
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELA 35

This is an F-box-like family. Length = 47

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 52/193 (26%)

Query: 108 QLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAG----------- 156
           +LV+ NP T Q R+LP     R+                      Y  G           
Sbjct: 15  RLVVWNPSTGQSRWLPTPKSRRS----------------NKESDTYFLGYDPIEKQYKVL 58

Query: 157 GMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWIT- 215
             SD        E   ++Y    ++W+ I   P            +  VC  G+LY++  
Sbjct: 59  CFSDRSGNRNQSE--HQVYTLGSNSWRTIECSPPHHP------LKSRGVCINGVLYYLAY 110

Query: 216 ---SARAYSVIGFDIESNTWRE-LSAP--MADRLEFATLVSRNQKLTLIGGTCGGDACVW 269
              +   Y ++ FD+ S  ++E +  P   +D +++ +L++   KL          A + 
Sbjct: 111 TLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKL----------AVLK 160

Query: 270 ELSEGGDDDIWCL 282
           +  +  + D+W L
Sbjct: 161 QKKDTNNFDLWVL 173

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 151 RIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMP 189
           +IYV GG       G    S VE+YD   + W  + SMP
Sbjct: 13  KIYVIGGYD-----GGQSLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 7  LDVLANIFSFLSPDSLARAKSVCSHWHT 34
           ++L  I S L P  L R + V   W +
Sbjct: 3  DEILEEILSKLDPKDLLRLRKVSRKWRS 30

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	373
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.97
PHA03098	534	kelch-like protein; Provisional	99.97
PLN02153	341	epithiospecifier protein	99.97
PHA02713	557	hypothetical protein; Provisional	99.97
PLN02193	470	nitrile-specifier protein	99.96
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.96
PLN02153	341	epithiospecifier protein	99.96
PHA02790	480	Kelch-like protein; Provisional	99.96
PHA02790	480	Kelch-like protein; Provisional	99.96
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.96
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.95
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.95
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.95
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.95
PHA03098	534	kelch-like protein; Provisional	99.94
PLN02193	470	nitrile-specifier protein	99.94
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.93
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.9
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.88
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.8
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.77
KOG1230	521	consensus Protein containing repeated kelch motifs	99.77
KOG1230	521	consensus Protein containing repeated kelch motifs	99.73
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.69
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.65
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.58
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.45
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.4
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.06
PF13964	50	Kelch_6: Kelch motif	98.89
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.84
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.75
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.73
PF13964	50	Kelch_6: Kelch motif	98.72
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	98.68
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.58
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.48
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.42
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.39
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.37
smart00612	47	Kelch Kelch domain.	98.31
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.31
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.27
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	98.23
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.16
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.1
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.07
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.04
PF13415	49	Kelch_3: Galactose oxidase, central domain	97.95
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	97.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.94
smart00612	47	Kelch Kelch domain.	97.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.78
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.74
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.72
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	97.72
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.54
PLN02772	398	guanylate kinase	97.39
PLN02772	398	guanylate kinase	97.32
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.29
PF13854	42	Kelch_5: Kelch motif	97.19
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.17
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.16
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.12
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.98
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.88
PRK05137	435	tolB translocation protein TolB; Provisional	96.84
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.77
PRK04792	448	tolB translocation protein TolB; Provisional	96.66
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	96.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	96.53
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.48
PTZ00421	493	coronin; Provisional	96.47
PRK11028	330	6-phosphogluconolactonase; Provisional	96.45
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.43
smart00284	255	OLF Olfactomedin-like domains.	96.42
KOG2055	514	consensus WD40 repeat protein [General function pr	96.41
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.36
PRK11028	330	6-phosphogluconolactonase; Provisional	96.35
KOG2055	514	consensus WD40 repeat protein [General function pr	96.31
PRK04792	448	tolB translocation protein TolB; Provisional	96.26
PRK00178	430	tolB translocation protein TolB; Provisional	96.21
PRK00178	430	tolB translocation protein TolB; Provisional	96.05
PF13854	42	Kelch_5: Kelch motif	95.86
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.72
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.7
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.7
KOG0286	343	consensus G-protein beta subunit [General function	95.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.61
KOG0316	307	consensus Conserved WD40 repeat-containing protein	95.38
PTZ00420	568	coronin; Provisional	95.28
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.24
PRK04922	433	tolB translocation protein TolB; Provisional	95.13
KOG0316	307	consensus Conserved WD40 repeat-containing protein	95.08
PRK04922	433	tolB translocation protein TolB; Provisional	95.0
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	94.65
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	94.6
PRK02889	427	tolB translocation protein TolB; Provisional	94.59
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.53
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	94.53
KOG2321	703	consensus WD40 repeat protein [General function pr	94.46
PF03089	337	RAG2: Recombination activating protein 2; InterPro	94.14
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	93.98
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	93.54
PRK03629	429	tolB translocation protein TolB; Provisional	93.49
KOG0289	506	consensus mRNA splicing factor [General function p	93.32
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.14
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	92.82
PLN00181	793	protein SPA1-RELATED; Provisional	92.72
PRK03629	429	tolB translocation protein TolB; Provisional	92.67
KOG0270	463	consensus WD40 repeat-containing protein [Function	92.43
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	92.21
PRK05137	435	tolB translocation protein TolB; Provisional	92.21
PLN00181	793	protein SPA1-RELATED; Provisional	92.2
KOG2048	691	consensus WD40 repeat protein [General function pr	91.9
PRK04043	419	tolB translocation protein TolB; Provisional	91.88
KOG0266	456	consensus WD40 repeat-containing protein [General	91.49
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	91.48
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	91.34
KOG0279	315	consensus G protein beta subunit-like protein [Sig	91.24
PRK02889	427	tolB translocation protein TolB; Provisional	91.11
COG4946	668	Uncharacterized protein related to the periplasmic	91.06
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.9
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.68
KOG4341	483	consensus F-box protein containing LRR [General fu	90.63
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	90.52
KOG0289	506	consensus mRNA splicing factor [General function p	90.48
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	90.35
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.34
KOG0293	519	consensus WD40 repeat-containing protein [Function	90.28
KOG0649	325	consensus WD40 repeat protein [General function pr	90.15
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.15
COG4946	668	Uncharacterized protein related to the periplasmic	90.04
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.01
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	89.79
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	89.67
KOG2321	703	consensus WD40 repeat protein [General function pr	89.42
PF03089	337	RAG2: Recombination activating protein 2; InterPro	89.11
PRK04043	419	tolB translocation protein TolB; Provisional	89.06
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	89.02
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	88.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	88.3
PF13859	310	BNR_3: BNR repeat-like domain; PDB: 3B69_A.	88.19
KOG0649	325	consensus WD40 repeat protein [General function pr	87.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	87.72
KOG0296	399	consensus Angio-associated migratory cell protein	87.22
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.85
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	86.84
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	86.58
PRK13684	334	Ycf48-like protein; Provisional	86.56
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	86.28
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	86.04
PRK01742	429	tolB translocation protein TolB; Provisional	85.57
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	85.42
smart00284	255	OLF Olfactomedin-like domains.	85.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	85.17
KOG0315	311	consensus G-protein beta subunit-like protein (con	85.09
KOG0263	707	consensus Transcription initiation factor TFIID, s	84.78
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	84.05
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	83.81
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	83.65
KOG2106	626	consensus Uncharacterized conserved protein, conta	83.6
COG1520	370	FOG: WD40-like repeat [Function unknown]	83.16
KOG0286	343	consensus G-protein beta subunit [General function	82.73
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	82.35
KOG0303	472	consensus Actin-binding protein Coronin, contains	82.32
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	81.81
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.77
KOG0300	481	consensus WD40 repeat-containing protein [Function	81.32
KOG0647	347	consensus mRNA export protein (contains WD40 repea	81.1
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	80.85
KOG3545	249	consensus Olfactomedin and related extracellular m	80.83
KOG0279	315	consensus G protein beta subunit-like protein [Sig	80.34

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5.4e-36  Score=282.27  Aligned_cols=255  Identities=20%  Similarity=0.276  Sum_probs=225.1

Q ss_pred             CceEEEEEecCC----CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC----CceEEEEEcCcccceec
Q 046684           50 PAWFLALPTRNR----GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS----TILQLVLCNPFTRQFRY  121 (373)
Q Consensus        50 ~~~l~~~~~~~~----~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~----~~~~~~v~np~t~~w~~  121 (373)
                      ...++++++...    ...+..||+.++.|..++.++.+|..+++++.+|.||++||.+    ..+.+++|||.+++|+.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            355777777654    3778889999999999999889999999999999999999986    34679999999999999


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccC
Q 046684          122 LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTP  201 (373)
Q Consensus       122 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  201 (373)
                      +|+|..+|..+++++++           ++||++||.+     +......+|.||+.+++|..+++|+       ..+..
T Consensus       364 ~a~M~~~R~~~~v~~l~-----------g~iYavGG~d-----g~~~l~svE~YDp~~~~W~~va~m~-------~~r~~  420 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVLD-----------GKLYAVGGFD-----GEKSLNSVECYDPVTNKWTPVAPML-------TRRSG  420 (571)
T ss_pred             cCCccCccccceeEEEC-----------CEEEEEeccc-----cccccccEEEecCCCCcccccCCCC-------cceee
Confidence            99999999999999998           9999999998     8888899999999999999999994       47888


Q ss_pred             CceEEECCEEEEEEcC-----CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc----eEEEEee
Q 046684          202 NESVCTRGMLYWITSA-----RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD----ACVWELS  272 (373)
Q Consensus       202 ~~~~~~~g~ly~~gg~-----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~----~~i~~~~  272 (373)
                      +++++++|+||++||.     ...++.+|||.+++|+.+ .+|+..|.++++++++|+||++||.++..    ++.|++.
T Consensus       421 ~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~-~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  421 HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI-APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec-CCcccccccceEEEECCEEEEECCccCCCccceEEEEcCC
Confidence            9999999999999963     457899999999999999 89999999999999999999999988732    6778876


Q ss_pred             cCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEecccccCC
Q 046684          273 EGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVGGCCLTG  347 (373)
Q Consensus       273 ~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~~~~~~~  347 (373)
                      .    ++|+.+..|+.++.           ...++..+++||++||..     ..+.+||++  ++  +|+.+.. +...
T Consensus       500 ~----~~W~~v~~m~~~rs-----------~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~--~d--~W~~~~~-~~~~  559 (571)
T KOG4441|consen  500 T----NQWTMVAPMTSPRS-----------AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE--TD--TWTEVTE-PESG  559 (571)
T ss_pred             C----CceeEcccCccccc-----------cccEEEECCEEEEEecccCccccceeEEcCCC--CC--ceeeCCC-cccc
Confidence            5    99999988888775           488899999999999754     469999999  99  9998877 4433


Q ss_pred             C
Q 046684          348 G  348 (373)
Q Consensus       348 ~  348 (373)
                      +
T Consensus       560 ~  560 (571)
T KOG4441|consen  560 R  560 (571)
T ss_pred             c
Confidence            3

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=6.3e-35  Score=276.32  Aligned_cols=236  Identities=16%  Similarity=0.213  Sum_probs=202.7

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC----CceEEEEEcCcccceeccCCCCCCCCCCeEEEEE
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS----TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVM  138 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~----~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~  138 (373)
                      ..++.||+.+++|..++.++.++..+++++.+|.||++||..    ..+.+++|||.+++|..+|+|+.+|..+++++++
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~  351 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID  351 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence            356789999999999988888888888999999999999963    2457899999999999999999999999999888


Q ss_pred             cCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC
Q 046684          139 EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR  218 (373)
Q Consensus       139 ~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~  218 (373)
                                 ++||++||.+     +......+++||+.+++|+.+++||       .++..++++.++|+||++||..
T Consensus       352 -----------g~IYviGG~~-----~~~~~~sve~Ydp~~~~W~~~~~mp-------~~r~~~~~~~~~g~IYviGG~~  408 (557)
T PHA02713        352 -----------DTIYAIGGQN-----GTNVERTIECYTMGDDKWKMLPDMP-------IALSSYGMCVLDQYIYIIGGRT  408 (557)
T ss_pred             -----------CEEEEECCcC-----CCCCCceEEEEECCCCeEEECCCCC-------cccccccEEEECCEEEEEeCCC
Confidence                       9999999986     4455678999999999999999995       4566677889999999999743


Q ss_pred             ----------------------ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc-----eEEEEe
Q 046684          219 ----------------------AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD-----ACVWEL  271 (373)
Q Consensus       219 ----------------------~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~-----~~i~~~  271 (373)
                                            .+.+.+|||++++|+.+ .+++..+..+++++++|+||++||..+..     +++|++
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp  487 (557)
T PHA02713        409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT  487 (557)
T ss_pred             cccccccccccccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecC
Confidence                                  35799999999999999 79999998899999999999999975321     456666


Q ss_pred             ecCCCC-CCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCc--cEEEEEccccCCcccEEEec
Q 046684          272 SEGGDD-DIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGL--GMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       272 ~~~~~~-~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~yd~~~~~~~~~W~~~~  341 (373)
                          ++ ++|+.+..||.++.           ...+++.+|+||++||..+  .+.+||++  ++  +|+.+.
T Consensus       488 ----~~~~~W~~~~~m~~~r~-----------~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~--~~--~W~~~~  541 (557)
T PHA02713        488 ----NTYNGWELITTTESRLS-----------ALHTILHDNTIMMLHCYESYMLQDTFNVY--TY--EWNHIC  541 (557)
T ss_pred             ----CCCCCeeEccccCcccc-----------cceeEEECCEEEEEeeecceeehhhcCcc--cc--cccchh
Confidence                55 69999999998775           3788889999999998765  68999999  99  999664

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=239.17  Aligned_cols=227  Identities=18%  Similarity=0.268  Sum_probs=192.9

Q ss_pred             cccchhccccccchhhccC---CCCceEEEEEecCC----CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEee
Q 046684           29 CSHWHTCAKLYHLHSVSQH---RRPAWFLALPTRNR----GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRP  101 (373)
Q Consensus        29 ck~W~~li~~~~f~~~~~~---~~~~~l~~~~~~~~----~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~g  101 (373)
                      .+.|..+..-|.=+  .+.   .....++++|+.+.    .+.++.|||..++|..++++..+|..+++++++|.||++|
T Consensus       310 ~~~w~~~a~m~~~r--~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavG  387 (571)
T KOG4441|consen  310 TNEWSSLAPMPSPR--CRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVG  387 (571)
T ss_pred             cCcEeecCCCCccc--ccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEe
Confidence            34566666555211  111   23445777777662    3789999999999999999999999999999999999999


Q ss_pred             CCCC---ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc-ccceEEEEEC
Q 046684          102 INST---ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT-YESMVEMYDS  177 (373)
Q Consensus       102 g~~~---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~-~~~~~~~yd~  177 (373)
                      |.++   ...+..|||.|++|..+++|+..|..+++++++           ++||++||.+     +.. ....+++||+
T Consensus       388 G~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~-----------g~iYi~GG~~-----~~~~~l~sve~YDP  451 (571)
T KOG4441|consen  388 GFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG-----------GKLYIIGGGD-----GSSNCLNSVECYDP  451 (571)
T ss_pred             ccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC-----------CEEEEEcCcC-----CCccccceEEEEcC
Confidence            9753   457999999999999999999999999999998           9999999987     544 7889999999


Q ss_pred             CCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCCceeEEEECC
Q 046684          178 RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQ  253 (373)
Q Consensus       178 ~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g  253 (373)
                      .+++|+.+++|       ...|.++.+++++|+||++||..    ...+.+|||++++|+.+ .+++..+...++++.++
T Consensus       452 ~t~~W~~~~~M-------~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~  523 (571)
T KOG4441|consen  452 ETNTWTLIAPM-------NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGG  523 (571)
T ss_pred             CCCceeecCCc-------ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEECC
Confidence            99999999999       56778888999999999999744    56699999999999999 89999999999999999


Q ss_pred             EEEEEEeecCCc----eEEEEeecCCCCCCeEEEEe
Q 046684          254 KLTLIGGTCGGD----ACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       254 ~l~~~gg~~~~~----~~i~~~~~~~~~~~W~~v~~  285 (373)
                      +||++||.++..    ++.|+++.    ++|+....
T Consensus       524 ~ly~vGG~~~~~~l~~ve~ydp~~----d~W~~~~~  555 (571)
T KOG4441|consen  524 KLYAVGGFDGNNNLNTVECYDPET----DTWTEVTE  555 (571)
T ss_pred             EEEEEecccCccccceeEEcCCCC----CceeeCCC
Confidence            999999987664    88887755    99999988

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=5.4e-29  Score=237.88  Aligned_cols=238  Identities=14%  Similarity=0.158  Sum_probs=192.6

Q ss_pred             eEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEc
Q 046684           64 CCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVME  139 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~  139 (373)
                      .+..|++..++|..++..+. +..+++++.++.||++||...    .++++.||+.+++|..+|+++.+|..+++++++ 
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~-  342 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN-  342 (534)
T ss_pred             eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEEC-
Confidence            34457888888988754432 334568889999999999632    247899999999999999999999999888887 


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC-
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR-  218 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-  218 (373)
                                ++||++||..     .......+++||+.+++|+.++++|       .++..++++.++|++|++||.. 
T Consensus       343 ----------~~lyv~GG~~-----~~~~~~~v~~yd~~~~~W~~~~~lp-------~~r~~~~~~~~~~~iYv~GG~~~  400 (534)
T PHA03098        343 ----------NRIYVIGGIY-----NSISLNTVESWKPGESKWREEPPLI-------FPRYNPCVVNVNNLIYVIGGISK  400 (534)
T ss_pred             ----------CEEEEEeCCC-----CCEecceEEEEcCCCCceeeCCCcC-------cCCccceEEEECCEEEEECCcCC
Confidence                      9999999986     5556778999999999999999885       4567778889999999998732 


Q ss_pred             ----ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc-------eEEEEeecCCCCCCeEEEEeec
Q 046684          219 ----AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD-------ACVWELSEGGDDDIWCLIEKVP  287 (373)
Q Consensus       219 ----~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~-------~~i~~~~~~~~~~~W~~v~~~p  287 (373)
                          .+.+..||+.+++|+.+ .++|.++.++.++..+++||++||.....       +.+|++    .+++|+.+..++
T Consensus       401 ~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~----~~~~W~~~~~~~  475 (534)
T PHA03098        401 NDELLKTVECFSLNTNKWSKG-SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNP----VTNKWTELSSLN  475 (534)
T ss_pred             CCcccceEEEEeCCCCeeeec-CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecC----CCCceeeCCCCC
Confidence                36799999999999999 78888888888899999999999965321       445555    559999998887


Q ss_pred             hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEeccccc
Q 046684          288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVGGCCL  345 (373)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~~~~~  345 (373)
                      .++..           ..++..+++||++||..     +.+.+||++  ++  +|+.++..|-
T Consensus       476 ~~r~~-----------~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~--~W~~~~~~p~  523 (534)
T PHA03098        476 FPRIN-----------ASLCIFNNKIYVVGGDKYEYYINEIEVYDDK--TN--TWTLFCKFPK  523 (534)
T ss_pred             ccccc-----------ceEEEECCEEEEEcCCcCCcccceeEEEeCC--CC--EEEecCCCcc
Confidence            66542           45566699999999753     579999999  99  9998877553

>PLN02153 epithiospecifier protein

Probab=99.97  E-value=1.7e-28  Score=220.95  Aligned_cols=235  Identities=14%  Similarity=0.149  Sum_probs=180.0

Q ss_pred             CCCCCccccCC----CCCCCCceeEEeeCcEEEEeeCCCC-----ceEEEEEcCcccceeccCCCC-CCCC---CCeEEE
Q 046684           70 PVSDKWHVLSL----DFLPYPVRPVSSIGSFLLLRPINST-----ILQLVLCNPFTRQFRYLPLLN-VSRT---NPAVGI  136 (373)
Q Consensus        70 ~~~~~w~~~~~----~~~~~~~~~~~~~~g~l~~~gg~~~-----~~~~~v~np~t~~w~~lp~~~-~~~~---~~~~~~  136 (373)
                      +....|.+++.    .+.+|..+++++.++.||++||...     .+++++||+.+++|+.++++. .++.   .+++++
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~   83 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA   83 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence            35667988854    5678888989999999999999632     247999999999999988764 3332   455666


Q ss_pred             EEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEc
Q 046684          137 VMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS  216 (373)
Q Consensus       137 ~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg  216 (373)
                      ++           ++||++||..     ......++++||+++++|+.++.++..  ..+..|..+++++.+++||++||
T Consensus        84 ~~-----------~~iyv~GG~~-----~~~~~~~v~~yd~~t~~W~~~~~~~~~--~~p~~R~~~~~~~~~~~iyv~GG  145 (341)
T PLN02153         84 VG-----------TKLYIFGGRD-----EKREFSDFYSYDTVKNEWTFLTKLDEE--GGPEARTFHSMASDENHVYVFGG  145 (341)
T ss_pred             EC-----------CEEEEECCCC-----CCCccCcEEEEECCCCEEEEeccCCCC--CCCCCceeeEEEEECCEEEEECC
Confidence            66           9999999986     445567899999999999998876321  01245667788899999999987


Q ss_pred             CC----------ceEEEEEECCCCcEEecccCC---CCCCCceeEEEECCEEEEEEeecC------------CceEEEEe
Q 046684          217 AR----------AYSVIGFDIESNTWRELSAPM---ADRLEFATLVSRNQKLTLIGGTCG------------GDACVWEL  271 (373)
Q Consensus       217 ~~----------~~~i~~yd~~~~~w~~~~~~~---p~~~~~~~~~~~~g~l~~~gg~~~------------~~~~i~~~  271 (373)
                      ..          ...+.+||+++++|..+ .++   +..+.++.+++++++||+++|...            ..+++|++
T Consensus       146 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~l-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~  224 (341)
T PLN02153        146 VSKGGLMKTPERFRTIEAYNIADGKWVQL-PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP  224 (341)
T ss_pred             ccCCCccCCCcccceEEEEECCCCeEeeC-CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence            43          24789999999999998 343   356777888899999999988531            12566666


Q ss_pred             ecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--------------ccEEEEEccccCCc
Q 046684          272 SEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--------------LGMIIWREDEDKRK  334 (373)
Q Consensus       272 ~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~yd~~~~~~~  334 (373)
                      +    +++|+++..   +|.++.           .+.++..+++||++||..              +.+++||++  ++ 
T Consensus       225 ~----~~~W~~~~~~g~~P~~r~-----------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~-  286 (341)
T PLN02153        225 A----SGKWTEVETTGAKPSARS-----------VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TL-  286 (341)
T ss_pred             C----CCcEEeccccCCCCCCcc-----------eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--cc-
Confidence            4    499999875   344442           367788899999999852              379999999  99 


Q ss_pred             ccEEEecc
Q 046684          335 WEWVWVGG  342 (373)
Q Consensus       335 ~~W~~~~~  342 (373)
                       +|+.+..
T Consensus       287 -~W~~~~~  293 (341)
T PLN02153        287 -VWEKLGE  293 (341)
T ss_pred             -EEEeccC
Confidence             9998864

>PHA02713 hypothetical protein; Provisional

Probab=99.97  E-value=5.4e-29  Score=235.97  Aligned_cols=214  Identities=11%  Similarity=0.105  Sum_probs=176.4

Q ss_pred             CceEEEEEecC----CCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCC---ceEEEEEcCcccceecc
Q 046684           50 PAWFLALPTRN----RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINST---ILQLVLCNPFTRQFRYL  122 (373)
Q Consensus        50 ~~~l~~~~~~~----~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~---~~~~~v~np~t~~w~~l  122 (373)
                      ...++++|+..    ....++.|||.++.|..+++++.+|..+++++++|.||++||...   ...+.+|||.+++|..+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            34566666643    126788999999999999999899999999999999999999742   35799999999999999


Q ss_pred             CCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCC-------------CCCcccceEEEEECCCCceeeecCCC
Q 046684          123 PLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPR-------------GGATYESMVEMYDSRHDAWQIIGSMP  189 (373)
Q Consensus       123 p~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~-------------~~~~~~~~~~~yd~~~~~W~~~~~~p  189 (373)
                      ++||.++..+++++++           ++||++||......             ........+++||+++++|+.+++|+
T Consensus       383 ~~mp~~r~~~~~~~~~-----------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~  451 (557)
T PHA02713        383 PDMPIALSSYGMCVLD-----------QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW  451 (557)
T ss_pred             CCCCcccccccEEEEC-----------CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence            9999999998888887           99999999751100             00112567999999999999999994


Q ss_pred             ccccccceeccCCceEEECCEEEEEEcCC-----ceEEEEEECCC-CcEEecccCCCCCCCceeEEEECCEEEEEEeecC
Q 046684          190 VEFAVRLTVWTPNESVCTRGMLYWITSAR-----AYSVIGFDIES-NTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG  263 (373)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~~i~~yd~~~-~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~  263 (373)
                             ..+..+++++++|+||++||..     ...+.+|||++ ++|+.+ .++|..+...++++++|+||++||.++
T Consensus       452 -------~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~-~~m~~~r~~~~~~~~~~~iyv~Gg~~~  523 (557)
T PHA02713        452 -------TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI-TTTESRLSALHTILHDNTIMMLHCYES  523 (557)
T ss_pred             -------cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-cccCcccccceeEEECCEEEEEeeecc
Confidence                   4567778899999999998743     24578999999 899999 799999999999999999999999876


Q ss_pred             Cc-eEEEEeecCCCCCCeEEEEee
Q 046684          264 GD-ACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       264 ~~-~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      .. +++|++.+    ++|+.+...
T Consensus       524 ~~~~e~yd~~~----~~W~~~~~~  543 (557)
T PHA02713        524 YMLQDTFNVYT----YEWNHICHQ  543 (557)
T ss_pred             eeehhhcCccc----ccccchhhh
Confidence            33 67888865    999988654

>PLN02193 nitrile-specifier protein

Probab=99.96  E-value=1.7e-27  Score=222.12  Aligned_cols=241  Identities=17%  Similarity=0.182  Sum_probs=184.9

Q ss_pred             EEEEeCCC----CCccccCC---CCCCCCceeEEeeCcEEEEeeCCCC-----ceEEEEEcCcccceeccCCC---CC-C
Q 046684           65 CYVHNPVS----DKWHVLSL---DFLPYPVRPVSSIGSFLLLRPINST-----ILQLVLCNPFTRQFRYLPLL---NV-S  128 (373)
Q Consensus        65 ~~~~d~~~----~~w~~~~~---~~~~~~~~~~~~~~g~l~~~gg~~~-----~~~~~v~np~t~~w~~lp~~---~~-~  128 (373)
                      ++.+++.+    ++|.+++.   .+.+|..++++..++.||++||...     .+++++||+.+++|..++++   |. .
T Consensus       139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~  218 (470)
T PLN02193        139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS  218 (470)
T ss_pred             EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence            44447644    79998854   4678999999999999999999631     24699999999999988753   32 2


Q ss_pred             CCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEEC
Q 046684          129 RTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTR  208 (373)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~  208 (373)
                      +..+++++++           ++||++||..     ......++++||+.+++|+.+.+++..    +.+|..++++..+
T Consensus       219 ~~~~~~v~~~-----------~~lYvfGG~~-----~~~~~ndv~~yD~~t~~W~~l~~~~~~----P~~R~~h~~~~~~  278 (470)
T PLN02193        219 CLGVRMVSIG-----------STLYVFGGRD-----ASRQYNGFYSFDTTTNEWKLLTPVEEG----PTPRSFHSMAADE  278 (470)
T ss_pred             ccceEEEEEC-----------CEEEEECCCC-----CCCCCccEEEEECCCCEEEEcCcCCCC----CCCccceEEEEEC
Confidence            3455666666           9999999986     445567899999999999999877321    3467778888899


Q ss_pred             CEEEEEEcC----CceEEEEEECCCCcEEecccC--CCCCCCceeEEEECCEEEEEEeecCC---ceEEEEeecCCCCCC
Q 046684          209 GMLYWITSA----RAYSVIGFDIESNTWRELSAP--MADRLEFATLVSRNQKLTLIGGTCGG---DACVWELSEGGDDDI  279 (373)
Q Consensus       209 g~ly~~gg~----~~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~~~~~~g~l~~~gg~~~~---~~~i~~~~~~~~~~~  279 (373)
                      ++||++||.    ....+.+||+.+++|+.++.+  ++..+..+.+++++++||+++|..+.   .+.+|++    ++++
T Consensus       279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~----~t~~  354 (470)
T PLN02193        279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDP----VQDK  354 (470)
T ss_pred             CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEEC----CCCE
Confidence            999999864    346789999999999988432  45567778888999999999986542   2555555    4599


Q ss_pred             eEEEEee---chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--------------ccEEEEEccccCCcccEEEecc
Q 046684          280 WCLIEKV---PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--------------LGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       280 W~~v~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      |+++..+   |.++.           .+.++..+++||++||..              +.+++||++  ++  +|+.++.
T Consensus       355 W~~~~~~g~~P~~R~-----------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~--~W~~~~~  419 (470)
T PLN02193        355 WTQVETFGVRPSERS-----------VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TL--QWERLDK  419 (470)
T ss_pred             EEEeccCCCCCCCcc-----------eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC--cC--EEEEccc
Confidence            9998765   44432           467778899999999852              368999999  99  9998875


Q ss_pred             cc
Q 046684          343 CC  344 (373)
Q Consensus       343 ~~  344 (373)
                      .+
T Consensus       420 ~~  421 (470)
T PLN02193        420 FG  421 (470)
T ss_pred             CC
Confidence            43

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.96  E-value=1.5e-27  Score=215.61  Aligned_cols=239  Identities=15%  Similarity=0.208  Sum_probs=175.1

Q ss_pred             CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcC--cccceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCceEEEEE
Q 046684           79 SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNP--FTRQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNFRIYVA  155 (373)
Q Consensus        79 ~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np--~t~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~kl~~~  155 (373)
                      +.++.++...++++.++.||++||.. .+.++++|+  .+++|+.+++|| .+|..+++++++           ++||++
T Consensus         2 ~~lp~~~~~~~~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~-----------~~iYv~   69 (346)
T TIGR03547         2 PDLPVGFKNGTGAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID-----------GKLYVF   69 (346)
T ss_pred             CCCCccccCceEEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-----------CEEEEE
Confidence            34455666666778899999999963 357889985  678999999998 578888888887           999999


Q ss_pred             eccCCCCC-CCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCEEEEEEcCC---------------
Q 046684          156 GGMSDEPR-GGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGMLYWITSAR---------------  218 (373)
Q Consensus       156 gg~~~~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~---------------  218 (373)
                      ||...... ........+++||+.+++|+.++...      +..+..+.++ .++|+||++||..               
T Consensus        70 GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~------p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~  143 (346)
T TIGR03547        70 GGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS------PVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAAD  143 (346)
T ss_pred             eCCCCCCCCCcceecccEEEEECCCCEEecCCCCC------CCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcC
Confidence            99751100 01123568999999999999987321      2233444444 6899999998743               


Q ss_pred             -----------------------ceEEEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCc-----eEEE
Q 046684          219 -----------------------AYSVIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGD-----ACVW  269 (373)
Q Consensus       219 -----------------------~~~i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~-----~~i~  269 (373)
                                             .+.+.+||+.+++|+.+ .++|. .+..+.+++++++||++||.....     +.+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y  222 (346)
T TIGR03547       144 KDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQY  222 (346)
T ss_pred             ccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC-ccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEE
Confidence                                   25799999999999999 68875 567778889999999999975322     4456


Q ss_pred             EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----------------------ccEEEEE
Q 046684          270 ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG----------------------LGMIIWR  327 (373)
Q Consensus       270 ~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~yd  327 (373)
                      +++.  ++++|+.+..||.++.....    .+..+.++..+++||++||..                      ..+.+||
T Consensus       223 ~~~~--~~~~W~~~~~m~~~r~~~~~----~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd  296 (346)
T TIGR03547       223 LFTG--GKLEWNKLPPLPPPKSSSQE----GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA  296 (346)
T ss_pred             EecC--CCceeeecCCCCCCCCCccc----cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE
Confidence            6655  56799999999876421000    001234667899999999853                      1478999


Q ss_pred             ccccCCcccEEEecccccC
Q 046684          328 EDEDKRKWEWVWVGGCCLT  346 (373)
Q Consensus       328 ~~~~~~~~~W~~~~~~~~~  346 (373)
                      ++  ++  +|+.++..|.+
T Consensus       297 ~~--~~--~W~~~~~lp~~  311 (346)
T TIGR03547       297 LD--NG--KWSKVGKLPQG  311 (346)
T ss_pred             ec--CC--cccccCCCCCC
Confidence            99  99  99988766543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=99.96  E-value=2.1e-27  Score=213.91  Aligned_cols=253  Identities=12%  Similarity=0.157  Sum_probs=182.5

Q ss_pred             CceEEEEEecCC-----CeeEEEEeCCCCCccccCCC-CCCCC---ceeEEeeCcEEEEeeCCCC---ceEEEEEcCccc
Q 046684           50 PAWFLALPTRNR-----GLCCYVHNPVSDKWHVLSLD-FLPYP---VRPVSSIGSFLLLRPINST---ILQLVLCNPFTR  117 (373)
Q Consensus        50 ~~~l~~~~~~~~-----~~~~~~~d~~~~~w~~~~~~-~~~~~---~~~~~~~~g~l~~~gg~~~---~~~~~v~np~t~  117 (373)
                      ...++++++...     ...++.||+.+++|..++.+ ..++.   .++++++++.||++||...   .+++++|||.++
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence            345777766421     25788999999999988543 23442   5678899999999999632   357999999999


Q ss_pred             ceeccCCC-----CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCC-CCCcccceEEEEECCCCceeeecCCCcc
Q 046684          118 QFRYLPLL-----NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPR-GGATYESMVEMYDSRHDAWQIIGSMPVE  191 (373)
Q Consensus       118 ~w~~lp~~-----~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~  191 (373)
                      +|+.++++     |.+|..+++++.+           ++||++||...... .......++++||+++++|+.++.++..
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~~~-----------~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~  180 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMASDE-----------NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN  180 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEEEC-----------CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence            99999877     6778888887776           99999999752100 0011346799999999999998876321


Q ss_pred             ccccceeccCCceEEECCEEEEEEcCC------------ceEEEEEECCCCcEEeccc--CCCCCCCceeEEEECCEEEE
Q 046684          192 FAVRLTVWTPNESVCTRGMLYWITSAR------------AYSVIGFDIESNTWRELSA--PMADRLEFATLVSRNQKLTL  257 (373)
Q Consensus       192 ~~~~~~~~~~~~~~~~~g~ly~~gg~~------------~~~i~~yd~~~~~w~~~~~--~~p~~~~~~~~~~~~g~l~~  257 (373)
                          +..+..+.+++++|++|++||..            .+.+.+||+++++|+.+..  .+|.++..+.+++++++||+
T Consensus       181 ----~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv  256 (341)
T PLN02153        181 ----FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII  256 (341)
T ss_pred             ----CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE
Confidence                35677778888999999997632            3679999999999999832  25677888888999999999


Q ss_pred             EEeecCC-----------ceEEEEeecCCCCCCeEEEEe-----echhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCC
Q 046684          258 IGGTCGG-----------DACVWELSEGGDDDIWCLIEK-----VPIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVG  320 (373)
Q Consensus       258 ~gg~~~~-----------~~~i~~~~~~~~~~~W~~v~~-----~p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~  320 (373)
                      +||....           ..++|.++.  ++++|+.+..     +|.....          ...+... ++.||++||..
T Consensus       257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~~~~~~~~pr~~~~----------~~~~~v~~~~~~~~~gG~~  324 (341)
T PLN02153        257 FGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLGECGEPAMPRGWTA----------YTTATVYGKNGLLMHGGKL  324 (341)
T ss_pred             ECcccCCccccccccccccccEEEEEc--CccEEEeccCCCCCCCCCcccc----------ccccccCCcceEEEEcCcC
Confidence            9996311           125677776  7799999864     3332211          1223333 46899999873


Q ss_pred             ------ccEEEEEcc
Q 046684          321 ------LGMIIWRED  329 (373)
Q Consensus       321 ------~~~~~yd~~  329 (373)
                            .+++.|+..
T Consensus       325 ~~~~~~~~~~~~~~~  339 (341)
T PLN02153        325 PTNERTDDLYFYAVN  339 (341)
T ss_pred             CCCccccceEEEecc
Confidence                  356777654

>PHA02790 Kelch-like protein; Provisional

Probab=99.96  E-value=7.4e-28  Score=225.18  Aligned_cols=201  Identities=14%  Similarity=0.148  Sum_probs=170.7

Q ss_pred             EEeeCcEEEEeeCCC---CceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684           90 VSSIGSFLLLRPINS---TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA  166 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~---~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~  166 (373)
                      .+..++.||++||..   ....++.|||.+++|..+|+|+.+|..+++++++           ++||++||.+     ..
T Consensus       267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~-----------~~iYviGG~~-----~~  330 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPAN-----------NKLYVVGGLP-----NP  330 (480)
T ss_pred             eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEEC-----------CEEEEECCcC-----CC
Confidence            445899999999963   2357899999999999999999999888888877           9999999975     21


Q ss_pred             cccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC--ceEEEEEECCCCcEEecccCCCCCCC
Q 046684          167 TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR--AYSVIGFDIESNTWRELSAPMADRLE  244 (373)
Q Consensus       167 ~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--~~~i~~yd~~~~~w~~~~~~~p~~~~  244 (373)
                         ..++.||+.+++|+.++++|       .++..++++.++|+||++||..  ...+.+|||++++|+.+ .+++.++.
T Consensus       331 ---~sve~ydp~~n~W~~~~~l~-------~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~  399 (480)
T PHA02790        331 ---TSVERWFHGDAAWVNMPSLL-------KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHY  399 (480)
T ss_pred             ---CceEEEECCCCeEEECCCCC-------CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccc
Confidence               45899999999999999995       4566778899999999998743  35688999999999999 78988888


Q ss_pred             ceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----
Q 046684          245 FATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG----  320 (373)
Q Consensus       245 ~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----  320 (373)
                      .+.+++++|+||++||.    .++|+++.    ++|+.+..|+.++.           ...++..+|+||++||..    
T Consensus       400 ~~~~~~~~~~IYv~GG~----~e~ydp~~----~~W~~~~~m~~~r~-----------~~~~~v~~~~IYviGG~~~~~~  460 (480)
T PHA02790        400 KSCALVFGRRLFLVGRN----AEFYCESS----NTWTLIDDPIYPRD-----------NPELIIVDNKLLLIGGFYRGSY  460 (480)
T ss_pred             cceEEEECCEEEEECCc----eEEecCCC----CcEeEcCCCCCCcc-----------ccEEEEECCEEEEECCcCCCcc
Confidence            88889999999999974    47888865    99999999987765           377888999999999853    


Q ss_pred             -ccEEEEEccccCCcccEEEe
Q 046684          321 -LGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       321 -~~~~~yd~~~~~~~~~W~~~  340 (373)
                       ..+.+||++  ++  +|+..
T Consensus       461 ~~~ve~Yd~~--~~--~W~~~  477 (480)
T PHA02790        461 IDTIEVYNNR--TY--SWNIW  477 (480)
T ss_pred             cceEEEEECC--CC--eEEec
Confidence             469999999  99  99854

>PHA02790 Kelch-like protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=223.53  Aligned_cols=200  Identities=20%  Similarity=0.160  Sum_probs=168.9

Q ss_pred             CceEEEEEecCC---CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCC
Q 046684           50 PAWFLALPTRNR---GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN  126 (373)
Q Consensus        50 ~~~l~~~~~~~~---~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~  126 (373)
                      ...++++|+.+.   ...++.|||.+++|..+++++.+|..+++++.||.||++||......+..|||.+++|..+|+|+
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            345666666432   25788899999999999988889988888999999999999755567899999999999999999


Q ss_pred             CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684          127 VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC  206 (373)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~  206 (373)
                      .+|..+++++++           ++||++||..     +.  ...+++||+++++|+.++++|       .++..+.++.
T Consensus       351 ~~r~~~~~~~~~-----------g~IYviGG~~-----~~--~~~ve~ydp~~~~W~~~~~m~-------~~r~~~~~~~  405 (480)
T PHA02790        351 KPRCNPAVASIN-----------NVIYVIGGHS-----ET--DTTTEYLLPNHDQWQFGPSTY-------YPHYKSCALV  405 (480)
T ss_pred             CCCcccEEEEEC-----------CEEEEecCcC-----CC--CccEEEEeCCCCEEEeCCCCC-------CccccceEEE
Confidence            999988888887           9999999975     22  256899999999999999984       4556677889


Q ss_pred             ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC----ceEEEEeecCCCCCCeEE
Q 046684          207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG----DACVWELSEGGDDDIWCL  282 (373)
Q Consensus       207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~----~~~i~~~~~~~~~~~W~~  282 (373)
                      ++|+||++||    .+.+||+++++|+.+ .+++.++..+++++++|+||++||..+.    .+++|+++.    ++|+.
T Consensus       406 ~~~~IYv~GG----~~e~ydp~~~~W~~~-~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~----~~W~~  476 (480)
T PHA02790        406 FGRRLFLVGR----NAEFYCESSNTWTLI-DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT----YSWNI  476 (480)
T ss_pred             ECCEEEEECC----ceEEecCCCCcEeEc-CCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC----CeEEe
Confidence            9999999975    367899999999999 7899899999999999999999997532    277888865    99976


Q ss_pred             E
Q 046684          283 I  283 (373)
Q Consensus       283 v  283 (373)
                      .
T Consensus       477 ~  477 (480)
T PHA02790        477 W  477 (480)
T ss_pred             c
Confidence            4

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.96  E-value=5.1e-27  Score=212.16  Aligned_cols=236  Identities=16%  Similarity=0.125  Sum_probs=173.3

Q ss_pred             ceEEEEEecCCCeeEEEEeC--CCCCccccCCCC-CCCCceeEEeeCcEEEEeeCCCC---------ceEEEEEcCcccc
Q 046684           51 AWFLALPTRNRGLCCYVHNP--VSDKWHVLSLDF-LPYPVRPVSSIGSFLLLRPINST---------ILQLVLCNPFTRQ  118 (373)
Q Consensus        51 ~~l~~~~~~~~~~~~~~~d~--~~~~w~~~~~~~-~~~~~~~~~~~~g~l~~~gg~~~---------~~~~~v~np~t~~  118 (373)
                      ..++++++... ..++.||+  .+++|..++.++ .+|..+++++.++.||++||...         ..++++|||.+++
T Consensus        18 ~~vyv~GG~~~-~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~   96 (346)
T TIGR03547        18 DKVYVGLGSAG-TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS   96 (346)
T ss_pred             CEEEEEccccC-CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence            34556555433 56778885  578999998776 57888889999999999999632         3578999999999


Q ss_pred             eeccC-CCCCCCCCCeEE-EEEcCCCCCCCCCceEEEEEeccCCCCC----------C-------------------CCc
Q 046684          119 FRYLP-LLNVSRTNPAVG-IVMEGPAQHGPFPNFRIYVAGGMSDEPR----------G-------------------GAT  167 (373)
Q Consensus       119 w~~lp-~~~~~~~~~~~~-~~~~~~~~~~~~~~~kl~~~gg~~~~~~----------~-------------------~~~  167 (373)
                      |++++ +++..+..++++ +++           ++||++||......          .                   ...
T Consensus        97 W~~~~~~~p~~~~~~~~~~~~~-----------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (346)
T TIGR03547        97 WQKLDTRSPVGLLGASGFSLHN-----------GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF  165 (346)
T ss_pred             EecCCCCCCCcccceeEEEEeC-----------CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence            99997 455555555444 455           99999999751000          0                   000


Q ss_pred             ccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC-----ceEEEEEE--CCCCcEEecccCCC
Q 046684          168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR-----AYSVIGFD--IESNTWRELSAPMA  240 (373)
Q Consensus       168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~~i~~yd--~~~~~w~~~~~~~p  240 (373)
                      ....+++||+.+++|+.++++|      ...+..++++.++|+||++||..     ...+..||  +++++|..+ .++|
T Consensus       166 ~~~~v~~YDp~t~~W~~~~~~p------~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~-~~m~  238 (346)
T TIGR03547       166 WNKNVLSYDPSTNQWRNLGENP------FLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL-PPLP  238 (346)
T ss_pred             ccceEEEEECCCCceeECccCC------CCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec-CCCC
Confidence            1367999999999999999885      23456677888999999999742     23355555  577799999 6776


Q ss_pred             CCC-------CceeEEEECCEEEEEEeecC---------------------CceEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          241 DRL-------EFATLVSRNQKLTLIGGTCG---------------------GDACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       241 ~~~-------~~~~~~~~~g~l~~~gg~~~---------------------~~~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      .++       ..+.+++++|+||++||...                     ..+++|+++.    ++|+.+..||.++. 
T Consensus       239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~----~~W~~~~~lp~~~~-  313 (346)
T TIGR03547       239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN----GKWSKVGKLPQGLA-  313 (346)
T ss_pred             CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC----CcccccCCCCCCce-
Confidence            644       23346788999999999641                     1267898866    89999999987763 


Q ss_pred             hhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684          293 RLSGGKASWGGTRCAAGNGAICLYREVG  320 (373)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~  320 (373)
                                ...++..+|+||++||..
T Consensus       314 ----------~~~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       314 ----------YGVSVSWNNGVLLIGGEN  331 (346)
T ss_pred             ----------eeEEEEcCCEEEEEeccC
Confidence                      356677899999999865

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.95  E-value=3.4e-26  Score=208.24  Aligned_cols=252  Identities=14%  Similarity=0.120  Sum_probs=182.9

Q ss_pred             CceEEEEEecCCCeeEEEEeCC--CCCccccCCCC-CCCCceeEEeeCcEEEEeeCCCC---------ceEEEEEcCccc
Q 046684           50 PAWFLALPTRNRGLCCYVHNPV--SDKWHVLSLDF-LPYPVRPVSSIGSFLLLRPINST---------ILQLVLCNPFTR  117 (373)
Q Consensus        50 ~~~l~~~~~~~~~~~~~~~d~~--~~~w~~~~~~~-~~~~~~~~~~~~g~l~~~gg~~~---------~~~~~v~np~t~  117 (373)
                      ...++++++... ..++.||..  .+.|.+++.++ .+|..+++++.++.||++||...         ..++++|||.++
T Consensus        38 ~~~iyv~gG~~~-~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         38 NNTVYVGLGSAG-TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             CCEEEEEeCCCC-CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            344555555433 457788876  47899987654 47888888999999999999642         257999999999


Q ss_pred             ceeccCC-CCCCCCCCeEEE-EEcCCCCCCCCCceEEEEEeccCCC--CC---------------------------CCC
Q 046684          118 QFRYLPL-LNVSRTNPAVGI-VMEGPAQHGPFPNFRIYVAGGMSDE--PR---------------------------GGA  166 (373)
Q Consensus       118 ~w~~lp~-~~~~~~~~~~~~-~~~~~~~~~~~~~~kl~~~gg~~~~--~~---------------------------~~~  166 (373)
                      +|+.+++ .|..+..+++++ .+           ++||++||....  ..                           ...
T Consensus       117 ~W~~~~~~~p~~~~~~~~~~~~~-----------~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (376)
T PRK14131        117 SWQKLDTRSPVGLAGHVAVSLHN-----------GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY  185 (376)
T ss_pred             EEEeCCCCCCCcccceEEEEeeC-----------CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence            9999985 355555555554 44           999999997510  00                           000


Q ss_pred             cccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC-----ceE--EEEEECCCCcEEecccCC
Q 046684          167 TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR-----AYS--VIGFDIESNTWRELSAPM  239 (373)
Q Consensus       167 ~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~~--i~~yd~~~~~w~~~~~~~  239 (373)
                      .....+++||+.+++|+.+.++|      ...+..++++.++++||++||..     ...  ...||+++++|..+ .++
T Consensus       186 ~~~~~v~~YD~~t~~W~~~~~~p------~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~  258 (376)
T PRK14131        186 FFNKEVLSYDPSTNQWKNAGESP------FLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKL-PDL  258 (376)
T ss_pred             CcCceEEEEECCCCeeeECCcCC------CCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeec-CCC
Confidence            02367999999999999998885      23456677888999999999742     222  34567899999999 677


Q ss_pred             CCCCC--------ceeEEEECCEEEEEEeecCC---------------------ceEEEEeecCCCCCCeEEEEeechhh
Q 046684          240 ADRLE--------FATLVSRNQKLTLIGGTCGG---------------------DACVWELSEGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       240 p~~~~--------~~~~~~~~g~l~~~gg~~~~---------------------~~~i~~~~~~~~~~~W~~v~~~p~~~  290 (373)
                      |.++.        +...++++++||++||....                     .+++|+++.    ++|+.+..||.++
T Consensus       259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~----~~W~~~~~lp~~r  334 (376)
T PRK14131        259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN----GKWQKVGELPQGL  334 (376)
T ss_pred             CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC----CcccccCcCCCCc
Confidence            66542        12256789999999996421                     146788865    9999999999876


Q ss_pred             hhhhcCCCCCCCceEEEecCCEEEEEEcCC------ccEEEEEccccCCcccEEE
Q 046684          291 GMRLSGGKASWGGTRCAAGNGAICLYREVG------LGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~yd~~~~~~~~~W~~  339 (373)
                      ..           ..++..+|+||++||..      ..+..|+++  .+  .++.
T Consensus       335 ~~-----------~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~--~~--~~~~  374 (376)
T PRK14131        335 AY-----------GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD--GK--KLTV  374 (376)
T ss_pred             cc-----------eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc--CC--EEEE
Confidence            43           56788899999999853      378999999  88  6653

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.95  E-value=3.8e-26  Score=204.33  Aligned_cols=219  Identities=14%  Similarity=0.111  Sum_probs=168.3

Q ss_pred             eEEEEe-CCCC-CccccCCCCCCCCceeEEeeCcEEEEeeCCCC---ceEEEEEcCcccce----eccCCCCCCCCCCeE
Q 046684           64 CCYVHN-PVSD-KWHVLSLDFLPYPVRPVSSIGSFLLLRPINST---ILQLVLCNPFTRQF----RYLPLLNVSRTNPAV  134 (373)
Q Consensus        64 ~~~~~d-~~~~-~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~---~~~~~v~np~t~~w----~~lp~~~~~~~~~~~  134 (373)
                      .++.++ +..+ +|..++.++.++..+..++.++.||++||...   .++++.||+.+++|    +.+|++|.++..+++
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~  119 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSA  119 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceE
Confidence            566664 3323 69998877788877777888999999999632   46899999999998    788999999988888


Q ss_pred             EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEE
Q 046684          135 GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWI  214 (373)
Q Consensus       135 ~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~  214 (373)
                      ++++           ++||++||..     ......++++||+.+++|+.++++|.      ..+..+.++.++++||++
T Consensus       120 ~~~~-----------~~iYv~GG~~-----~~~~~~~v~~yd~~~~~W~~~~~~p~------~~r~~~~~~~~~~~iYv~  177 (323)
T TIGR03548       120 CYKD-----------GTLYVGGGNR-----NGKPSNKSYLFNLETQEWFELPDFPG------EPRVQPVCVKLQNELYVF  177 (323)
T ss_pred             EEEC-----------CEEEEEeCcC-----CCccCceEEEEcCCCCCeeECCCCCC------CCCCcceEEEECCEEEEE
Confidence            8887           9999999975     44446789999999999999988852      346667778899999999


Q ss_pred             EcCC---ceEEEEEECCCCcEEecccCCC-----CCCC-ceeEEEECCEEEEEEeecC----------------------
Q 046684          215 TSAR---AYSVIGFDIESNTWRELSAPMA-----DRLE-FATLVSRNQKLTLIGGTCG----------------------  263 (373)
Q Consensus       215 gg~~---~~~i~~yd~~~~~w~~~~~~~p-----~~~~-~~~~~~~~g~l~~~gg~~~----------------------  263 (373)
                      ||..   ..++++||+++++|+.+ .+++     ..+. ...++..+++||++||.+.                      
T Consensus       178 GG~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  256 (323)
T TIGR03548       178 GGGSNIAYTDGYKYSPKKNQWQKV-ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYK  256 (323)
T ss_pred             cCCCCccccceEEEecCCCeeEEC-CCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhH
Confidence            8753   24678999999999999 4442     2222 2334455799999999753                      


Q ss_pred             --------------CceEEEEeecCCCCCCeEEEEeech-hhhhhhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684          264 --------------GDACVWELSEGGDDDIWCLIEKVPI-EMGMRLSGGKASWGGTRCAAGNGAICLYREVG  320 (373)
Q Consensus       264 --------------~~~~i~~~~~~~~~~~W~~v~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  320 (373)
                                    ..+++|++..    ++|+.+..+|. ++.           ...++..+++||++||..
T Consensus       257 ~~~~~~~~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~~r~-----------~~~~~~~~~~iyv~GG~~  313 (323)
T TIGR03548       257 KEYFLKPPEWYNWNRKILIYNVRT----GKWKSIGNSPFFARC-----------GAALLLTGNNIFSINGEL  313 (323)
T ss_pred             HHHhCCCccccCcCceEEEEECCC----CeeeEcccccccccC-----------chheEEECCEEEEEeccc
Confidence                          2266777655    99999988774 332           466788899999999863

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.95  E-value=6.1e-26  Score=202.98  Aligned_cols=224  Identities=14%  Similarity=0.160  Sum_probs=167.8

Q ss_pred             CCceeEEeeCcEEEEeeCCCCc-------------eEEEEEc-Cccc-ceeccCCCCCCCCCCeEEEEEcCCCCCCCCCc
Q 046684           85 YPVRPVSSIGSFLLLRPINSTI-------------LQLVLCN-PFTR-QFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPN  149 (373)
Q Consensus        85 ~~~~~~~~~~g~l~~~gg~~~~-------------~~~~v~n-p~t~-~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (373)
                      ...+.++..++.||++||.+..             .++++++ +..+ +|..++++|.+|..++.++++           
T Consensus         4 ~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~-----------   72 (323)
T TIGR03548         4 VAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE-----------   72 (323)
T ss_pred             eeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEEC-----------
Confidence            3445678899999999996322             2567664 4433 799999999999877777776           


Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCce----eeecCCCccccccceeccCCceEEECCEEEEEEcC----CceE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW----QIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYS  221 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~  221 (373)
                      ++||++||..     +.....+++.||+.+++|    +.++++|       ..+..+++++++++||++||.    ..+.
T Consensus        73 ~~lyviGG~~-----~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-------~~~~~~~~~~~~~~iYv~GG~~~~~~~~~  140 (323)
T TIGR03548        73 NGIYYIGGSN-----SSERFSSVYRITLDESKEELICETIGNLP-------FTFENGSACYKDGTLYVGGGNRNGKPSNK  140 (323)
T ss_pred             CEEEEEcCCC-----CCCCceeEEEEEEcCCceeeeeeEcCCCC-------cCccCceEEEECCEEEEEeCcCCCccCce
Confidence            9999999986     555567899999999988    6777774       345567788999999999874    3578


Q ss_pred             EEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCc---eEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          222 VIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGD---ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       222 i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~---~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      +++||+.+++|+.+ .++|. .+..+.+++++++||++||.....   +.+|+++    +++|+.+..++........  
T Consensus       141 v~~yd~~~~~W~~~-~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~----~~~W~~~~~~~~~~~p~~~--  213 (323)
T TIGR03548       141 SYLFNLETQEWFEL-PDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK----KNQWQKVADPTTDSEPISL--  213 (323)
T ss_pred             EEEEcCCCCCeeEC-CCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecC----CCeeEECCCCCCCCCceec--
Confidence            99999999999999 56664 577777788999999999975432   4566664    4999998876422111100  


Q ss_pred             CCCCCceEEEecCCEEEEEEcCC-------------------------------------ccEEEEEccccCCcccEEEe
Q 046684          298 KASWGGTRCAAGNGAICLYREVG-------------------------------------LGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~~-------------------------------------~~~~~yd~~~~~~~~~W~~~  340 (373)
                         .....++..+++||++||..                                     +.+++||++  ++  +|+.+
T Consensus       214 ---~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~--~~--~W~~~  286 (323)
T TIGR03548       214 ---LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR--TG--KWKSI  286 (323)
T ss_pred             ---cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC--CC--eeeEc
Confidence               01244556689999999864                                     359999999  99  99999


Q ss_pred             ccccc
Q 046684          341 GGCCL  345 (373)
Q Consensus       341 ~~~~~  345 (373)
                      +..|.
T Consensus       287 ~~~p~  291 (323)
T TIGR03548       287 GNSPF  291 (323)
T ss_pred             ccccc
Confidence            86553

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.95  E-value=1.1e-25  Score=204.99  Aligned_cols=245  Identities=16%  Similarity=0.195  Sum_probs=173.6

Q ss_pred             CccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCc--ccceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCce
Q 046684           74 KWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPF--TRQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNF  150 (373)
Q Consensus        74 ~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~--t~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~  150 (373)
                      .+..++.++.++...+.++.++.||++||.. ...++++|+.  +++|..++++| .+|..+++++++           +
T Consensus        18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~-----------~   85 (376)
T PRK14131         18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID-----------G   85 (376)
T ss_pred             ecccCCCCCcCccCCeEEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC-----------C
Confidence            3455555666666667888999999998853 3458888876  47899999987 478777777777           9


Q ss_pred             EEEEEeccCCCCC-CCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCC----------
Q 046684          151 RIYVAGGMSDEPR-GGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSAR----------  218 (373)
Q Consensus       151 kl~~~gg~~~~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~----------  218 (373)
                      +||++||...... .......++++||+.+++|+.++.+.      +..+..+.++. .+++||++||..          
T Consensus        86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~------p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d  159 (376)
T PRK14131         86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS------PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFED  159 (376)
T ss_pred             EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC------CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhh
Confidence            9999999761000 00123578999999999999987531      12233444454 899999998743          


Q ss_pred             ----------------------------ceEEEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCc---e
Q 046684          219 ----------------------------AYSVIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGD---A  266 (373)
Q Consensus       219 ----------------------------~~~i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~---~  266 (373)
                                                  .+.+++||+.+++|+.+ .++|. .+.++.++.++++||++||.....   .
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~-~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~  238 (376)
T PRK14131        160 LAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNA-GESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTD  238 (376)
T ss_pred             hhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeEC-CcCCCCCCCcceEEEECCEEEEEeeeECCCcCCh
Confidence                                        25799999999999999 67775 566777888899999999964321   3


Q ss_pred             EEE--EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----------------------cc
Q 046684          267 CVW--ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG----------------------LG  322 (373)
Q Consensus       267 ~i~--~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~  322 (373)
                      ++|  +++.  ++++|+.+..||.++.......   .....++..+++||++||..                      ..
T Consensus       239 ~~~~~~~~~--~~~~W~~~~~~p~~~~~~~~~~---~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (376)
T PRK14131        239 AVKQGKFTG--NNLKWQKLPDLPPAPGGSSQEG---VAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS  313 (376)
T ss_pred             hheEEEecC--CCcceeecCCCCCCCcCCcCCc---cceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceee
Confidence            444  4444  6689999999987653210000   01123456799999999853                      12


Q ss_pred             EEEEEccccCCcccEEEecccccC
Q 046684          323 MIIWREDEDKRKWEWVWVGGCCLT  346 (373)
Q Consensus       323 ~~~yd~~~~~~~~~W~~~~~~~~~  346 (373)
                      +.+||++  ++  +|+.++..|.+
T Consensus       314 ~e~yd~~--~~--~W~~~~~lp~~  333 (376)
T PRK14131        314 DEIYALV--NG--KWQKVGELPQG  333 (376)
T ss_pred             hheEEec--CC--cccccCcCCCC
Confidence            5689999  99  99988765543

>PHA03098 kelch-like protein; Provisional

Probab=99.94  E-value=1e-25  Score=215.30  Aligned_cols=213  Identities=20%  Similarity=0.249  Sum_probs=174.1

Q ss_pred             ceEEEEEecCC----CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC---CceEEEEEcCcccceeccC
Q 046684           51 AWFLALPTRNR----GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS---TILQLVLCNPFTRQFRYLP  123 (373)
Q Consensus        51 ~~l~~~~~~~~----~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~---~~~~~~v~np~t~~w~~lp  123 (373)
                      ..++++|+...    ...++.||+.+++|..++.++.+|..+++++.+|.||++||..   ..+++++|||.+++|+.++
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  374 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP  374 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence            34666665432    2478899999999999988888999999999999999999964   2457899999999999999


Q ss_pred             CCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCc
Q 046684          124 LLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNE  203 (373)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~  203 (373)
                      ++|.+|..++++.++           ++||++||...    .......+++||+.+++|+.++++|       .++..++
T Consensus       375 ~lp~~r~~~~~~~~~-----------~~iYv~GG~~~----~~~~~~~v~~yd~~t~~W~~~~~~p-------~~r~~~~  432 (534)
T PHA03098        375 PLIFPRYNPCVVNVN-----------NLIYVIGGISK----NDELLKTVECFSLNTNKWSKGSPLP-------ISHYGGC  432 (534)
T ss_pred             CcCcCCccceEEEEC-----------CEEEEECCcCC----CCcccceEEEEeCCCCeeeecCCCC-------ccccCce
Confidence            999999988888777           99999999651    2334678999999999999999885       3456677


Q ss_pred             eEEECCEEEEEEcCC-------ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC----ceEEEEee
Q 046684          204 SVCTRGMLYWITSAR-------AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG----DACVWELS  272 (373)
Q Consensus       204 ~~~~~g~ly~~gg~~-------~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~----~~~i~~~~  272 (373)
                      ++..+|++|++||..       ...+++||+++++|+.+ .+++.++..+.+++.+|+||++||....    .+++|+++
T Consensus       433 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCC
Confidence            888999999998742       34599999999999999 6788888888888999999999997643    25666664


Q ss_pred             cCCCCCCeEEEEeechhh
Q 046684          273 EGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       273 ~~~~~~~W~~v~~~p~~~  290 (373)
                          +++|+.+..+|...
T Consensus       512 ----~~~W~~~~~~p~~~  525 (534)
T PHA03098        512 ----TNTWTLFCKFPKVI  525 (534)
T ss_pred             ----CCEEEecCCCcccc
Confidence                59999998877543

>PLN02193 nitrile-specifier protein

Probab=99.94  E-value=1.2e-24  Score=203.07  Aligned_cols=254  Identities=12%  Similarity=0.184  Sum_probs=183.3

Q ss_pred             CceEEEEEecCC-----CeeEEEEeCCCCCccccCCC-CCC---CCceeEEeeCcEEEEeeCCCC---ceEEEEEcCccc
Q 046684           50 PAWFLALPTRNR-----GLCCYVHNPVSDKWHVLSLD-FLP---YPVRPVSSIGSFLLLRPINST---ILQLVLCNPFTR  117 (373)
Q Consensus        50 ~~~l~~~~~~~~-----~~~~~~~d~~~~~w~~~~~~-~~~---~~~~~~~~~~g~l~~~gg~~~---~~~~~v~np~t~  117 (373)
                      ...++++++...     ...++.||+.+++|..++.. ..|   +..+++++.++.||++||...   .+++++|||.++
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            445777766431     14688999999999987532 122   346678889999999999632   468999999999


Q ss_pred             ceeccCCC---CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccc
Q 046684          118 QFRYLPLL---NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAV  194 (373)
Q Consensus       118 ~w~~lp~~---~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~  194 (373)
                      +|++++++   |.+|..+++++.+           ++||++||..     ......++++||+.+++|+.++....    
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~~~-----------~~iYv~GG~~-----~~~~~~~~~~yd~~t~~W~~~~~~~~----  314 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAADE-----------ENVYVFGGVS-----ATARLKTLDSYNIVDKKWFHCSTPGD----  314 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEEEC-----------CEEEEECCCC-----CCCCcceEEEEECCCCEEEeCCCCCC----
Confidence            99999887   7788888887776           9999999986     55556789999999999998865311    


Q ss_pred             cceeccCCceEEECCEEEEEEcCC---ceEEEEEECCCCcEEecccCC---CCCCCceeEEEECCEEEEEEeecCC----
Q 046684          195 RLTVWTPNESVCTRGMLYWITSAR---AYSVIGFDIESNTWRELSAPM---ADRLEFATLVSRNQKLTLIGGTCGG----  264 (373)
Q Consensus       195 ~~~~~~~~~~~~~~g~ly~~gg~~---~~~i~~yd~~~~~w~~~~~~~---p~~~~~~~~~~~~g~l~~~gg~~~~----  264 (373)
                      .+..|..+.+++++|++|++||..   .+.+++||+++++|+.+ .++   |.+|..+.+++++++||++||....    
T Consensus       315 ~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~-~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~  393 (470)
T PLN02193        315 SFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV-ETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLA  393 (470)
T ss_pred             CCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe-ccCCCCCCCcceeEEEEECCEEEEECCccCCcccc
Confidence            134567778888999999998643   47899999999999998 443   6678888889999999999996420    


Q ss_pred             -----c--eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce-EEEec-CCEEEEEEcCC------ccEEEEEcc
Q 046684          265 -----D--ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT-RCAAG-NGAICLYREVG------LGMIIWRED  329 (373)
Q Consensus       265 -----~--~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~~~------~~~~~yd~~  329 (373)
                           .  .++|.++.  ++++|+.+..++.....   +..+..... ..... ++.|+++||..      ++++.++++
T Consensus       394 ~~~~~~~~ndv~~~D~--~t~~W~~~~~~~~~~~~---P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~  468 (470)
T PLN02193        394 HVGPGQLTDGTFALDT--ETLQWERLDKFGEEEET---PSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID  468 (470)
T ss_pred             ccCccceeccEEEEEc--CcCEEEEcccCCCCCCC---CCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence                 1  24666666  77999998765421100   000011111 12222 45699999763      467777765

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.93  E-value=7.6e-25  Score=177.13  Aligned_cols=266  Identities=12%  Similarity=0.150  Sum_probs=200.2

Q ss_pred             CeeEEEEeCCCCCccccCC-------------CCCCCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceecc--
Q 046684           62 GLCCYVHNPVSDKWHVLSL-------------DFLPYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYL--  122 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~~~-------------~~~~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~l--  122 (373)
                      .-.++.+|..+-+|.++++             .+..|+.+.++...+.+|+.||.+.    -+.++.|||.|++|.+.  
T Consensus        43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v  122 (392)
T KOG4693|consen   43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEV  122 (392)
T ss_pred             cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccce
Confidence            3678889999999998865             1234678889999999999999743    34689999999999874  


Q ss_pred             -CCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccC
Q 046684          123 -PLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTP  201 (373)
Q Consensus       123 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  201 (373)
                       .-.|..|..+++++.+           +..|++||+..+   .....++++++|..|-+|+.+....    .|+..|..
T Consensus       123 ~G~vPgaRDGHsAcV~g-----------n~MyiFGGye~~---a~~FS~d~h~ld~~TmtWr~~~Tkg----~PprwRDF  184 (392)
T KOG4693|consen  123 EGFVPGARDGHSACVWG-----------NQMYIFGGYEED---AQRFSQDTHVLDFATMTWREMHTKG----DPPRWRDF  184 (392)
T ss_pred             eeecCCccCCceeeEEC-----------cEEEEecChHHH---HHhhhccceeEeccceeeeehhccC----CCchhhhh
Confidence             3567889999999998           999999998621   2345678999999999999997763    33778888


Q ss_pred             CceEEECCEEEEEEcCC-------------ceEEEEEECCCCcEEecccC--CCCCCCceeEEEECCEEEEEEeecCCc-
Q 046684          202 NESVCTRGMLYWITSAR-------------AYSVIGFDIESNTWRELSAP--MADRLEFATLVSRNQKLTLIGGTCGGD-  265 (373)
Q Consensus       202 ~~~~~~~g~ly~~gg~~-------------~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~~~~~~g~l~~~gg~~~~~-  265 (373)
                      ++++++++.+|++||+.             -..|+++|++++.|...+..  .|..|..++..+.+|++|++||+.+.- 
T Consensus       185 H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln  264 (392)
T KOG4693|consen  185 HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN  264 (392)
T ss_pred             hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh
Confidence            99999999999999642             36899999999999877222  266788899999999999999987652 


Q ss_pred             ---eEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCcc-EEEEEccccCCcccEE
Q 046684          266 ---ACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLG-MIIWREDEDKRKWEWV  338 (373)
Q Consensus       266 ---~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~yd~~~~~~~~~W~  338 (373)
                         .++|.++.  .+..|+++..   -|.++.           ...+++.|+++|++||.+.. ..--.+.   +   -.
T Consensus       265 ~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRR-----------RqC~~v~g~kv~LFGGTsP~~~~~~Spt---~---~~  325 (392)
T KOG4693|consen  265 VHFNDLYCFDP--KTSMWSVISVRGKYPSARR-----------RQCSVVSGGKVYLFGGTSPLPCHPLSPT---N---YN  325 (392)
T ss_pred             hhhcceeeccc--ccchheeeeccCCCCCccc-----------ceeEEEECCEEEEecCCCCCCCCCCCcc---c---cC
Confidence               57888887  8899999865   344443           47888899999999988631 1112222   1   11


Q ss_pred             E-ecccccCCCCcccccceeEEEeccccccee
Q 046684          339 W-VGGCCLTGGKQVQNVPMRGVLLHPSLACAC  369 (373)
Q Consensus       339 ~-~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~  369 (373)
                      - ++...+....     -+...-|+|+|.+++
T Consensus       326 G~~~~~~LiD~S-----DLHvLDF~PsLKTLa  352 (392)
T KOG4693|consen  326 GMISPSGLIDLS-----DLHVLDFAPSLKTLA  352 (392)
T ss_pred             CCCCcccccccc-----cceeeecChhHHHHH
Confidence            1 1122222222     356788999998865

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.90  E-value=4.9e-21  Score=162.90  Aligned_cols=214  Identities=20%  Similarity=0.356  Sum_probs=147.0

Q ss_pred             EeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCC---CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc
Q 046684           91 SSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSR---TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT  167 (373)
Q Consensus        91 ~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~---~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~  167 (373)
                      .+|||+||+...    ..+++|||.|++|+.||+.+.+.   .....++..+..+.+     |||+.+....     ...
T Consensus         2 ~sCnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~-----YKVv~~~~~~-----~~~   67 (230)
T TIGR01640         2 VPCDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQ-----YKVLCFSDRS-----GNR   67 (230)
T ss_pred             cccceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCc-----EEEEEEEeec-----CCC
Confidence            589999987654    67999999999999998765421   111234444444555     9999997542     222


Q ss_pred             ccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC---c-eEEEEEECCCCcEEe-cccCCCCC
Q 046684          168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR---A-YSVIGFDIESNTWRE-LSAPMADR  242 (373)
Q Consensus       168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~-~~i~~yd~~~~~w~~-~~~~~p~~  242 (373)
                      ....+++|++++++|+.+...+.     ... .....++++|.+||+....   . ..|++||+++++|+. +  ++|..
T Consensus        68 ~~~~~~Vys~~~~~Wr~~~~~~~-----~~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i--~~P~~  139 (230)
T TIGR01640        68 NQSEHQVYTLGSNSWRTIECSPP-----HHP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFI--PLPCG  139 (230)
T ss_pred             CCccEEEEEeCCCCccccccCCC-----Ccc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeee--ecCcc
Confidence            45689999999999999875431     111 1223789999999997321   1 279999999999995 6  44432


Q ss_pred             C----CceeEEEECCEEEEEEeecC-CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEE
Q 046684          243 L----EFATLVSRNQKLTLIGGTCG-GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR  317 (373)
Q Consensus       243 ~----~~~~~~~~~g~l~~~gg~~~-~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  317 (373)
                      .    ....++.++|+|.++..... ..++||.+++++ +..|+++..++.+....+....    ...++..+++|++..
T Consensus       140 ~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~-~~~W~k~~~i~~~~~~~~~~~~----~~~~~~~~g~I~~~~  214 (230)
T TIGR01640       140 NSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVPIPPLPDLVDDN----FLSGFTDKGEIVLCC  214 (230)
T ss_pred             ccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCC-CCceeEEEEEcCcchhhhhhhe----eEeEEeeCCEEEEEe
Confidence            2    24578899999999886543 348999999763 4569999888753332222111    245667788888876


Q ss_pred             cC-Ccc-EEEEEccccCC
Q 046684          318 EV-GLG-MIIWREDEDKR  333 (373)
Q Consensus       318 ~~-~~~-~~~yd~~~~~~  333 (373)
                      .. ... ++.||++  ++
T Consensus       215 ~~~~~~~~~~y~~~--~~  230 (230)
T TIGR01640       215 EDENPFYIFYYNVG--EN  230 (230)
T ss_pred             CCCCceEEEEEecc--CC
Confidence            53 233 9999998  64

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.88  E-value=1.5e-21  Score=158.10  Aligned_cols=224  Identities=12%  Similarity=0.157  Sum_probs=171.8

Q ss_pred             CCCceeEEeeCcEEEEeeCCC--------CceEEEEEcCcccceeccCC-------------CCCCCCCCeEEEEEcCCC
Q 046684           84 PYPVRPVSSIGSFLLLRPINS--------TILQLVLCNPFTRQFRYLPL-------------LNVSRTNPAVGIVMEGPA  142 (373)
Q Consensus        84 ~~~~~~~~~~~g~l~~~gg~~--------~~~~~~v~np~t~~w~~lp~-------------~~~~~~~~~~~~~~~~~~  142 (373)
                      .|-.+++...+..||-+||..        ..-+++++|..+-+|+++|+             .|..|+.++++.+.    
T Consensus        13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~----   88 (392)
T KOG4693|consen   13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ----   88 (392)
T ss_pred             ccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc----
Confidence            345667788899999999862        23478999999999999987             23458888888888    


Q ss_pred             CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC-----
Q 046684          143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA-----  217 (373)
Q Consensus       143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~-----  217 (373)
                             .++|+.||++    ......+.++.||++++.|.+...-.    .-+..|.++++++.++.+|++||.     
T Consensus        89 -------d~~yvWGGRN----D~egaCN~Ly~fDp~t~~W~~p~v~G----~vPgaRDGHsAcV~gn~MyiFGGye~~a~  153 (392)
T KOG4693|consen   89 -------DKAYVWGGRN----DDEGACNLLYEFDPETNVWKKPEVEG----FVPGARDGHSACVWGNQMYIFGGYEEDAQ  153 (392)
T ss_pred             -------ceEEEEcCcc----Ccccccceeeeeccccccccccceee----ecCCccCCceeeEECcEEEEecChHHHHH
Confidence                   9999999987    13455678999999999998654321    114567888999999999999863     


Q ss_pred             -CceEEEEEECCCCcEEeccc--CCCCCCCceeEEEECCEEEEEEeecCCc-------------eEEEEeecCCCCCCeE
Q 046684          218 -RAYSVIGFDIESNTWRELSA--PMADRLEFATLVSRNQKLTLIGGTCGGD-------------ACVWELSEGGDDDIWC  281 (373)
Q Consensus       218 -~~~~i~~yd~~~~~w~~~~~--~~p~~~~~~~~~~~~g~l~~~gg~~~~~-------------~~i~~~~~~~~~~~W~  281 (373)
                       ...++.++|.++.+|+.+..  .+|.-|..+..+++++.+|++||..+..             +...++    .++.|.
T Consensus       154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~----~T~aW~  229 (392)
T KOG4693|consen  154 RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL----ATGAWT  229 (392)
T ss_pred             hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec----cccccc
Confidence             35789999999999998843  2345567788888999999999976542             455555    459998


Q ss_pred             EEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-------ccEEEEEccccCCcccEEEecc
Q 046684          282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-------LGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       282 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      .-.+-+...        .+++.+...+.+++||++||+.       +++++||++  +.  .|+.+..
T Consensus       230 r~p~~~~~P--------~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~--t~--~W~~I~~  285 (392)
T KOG4693|consen  230 RTPENTMKP--------GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK--TS--MWSVISV  285 (392)
T ss_pred             cCCCCCcCC--------CcccccceEEEcceEEEecccchhhhhhhcceeecccc--cc--hheeeec
Confidence            764322111        2234688889999999999875       579999999  99  9998843

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.80  E-value=7.3e-18  Score=157.21  Aligned_cols=228  Identities=15%  Similarity=0.158  Sum_probs=181.2

Q ss_pred             CCCCCCceeEEeeCcEEEEeeCCC---Cce--EEEEEcCcccceeccC---CCCCCCCCCeEEEEEcCCCCCCCCCceEE
Q 046684           81 DFLPYPVRPVSSIGSFLLLRPINS---TIL--QLVLCNPFTRQFRYLP---LLNVSRTNPAVGIVMEGPAQHGPFPNFRI  152 (373)
Q Consensus        81 ~~~~~~~~~~~~~~g~l~~~gg~~---~~~--~~~v~np~t~~w~~lp---~~~~~~~~~~~~~~~~~~~~~~~~~~~kl  152 (373)
                      .+.+|..++++.+++.+|++||..   ...  +++++|..+..|...+   ..|.++..+.+++++           .+|
T Consensus        57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-----------~~l  125 (482)
T KOG0379|consen   57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-----------DKL  125 (482)
T ss_pred             CcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEEC-----------CeE
Confidence            456788888888899999999862   122  5999999999998754   445788888888888           999


Q ss_pred             EEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC-----CceEEEEEEC
Q 046684          153 YVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA-----RAYSVIGFDI  227 (373)
Q Consensus       153 ~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~-----~~~~i~~yd~  227 (373)
                      |++||...    ......+++.||..+++|+.+.....    ++..|.+++++.++.++|++||.     ..+++++||+
T Consensus       126 ~lfGG~~~----~~~~~~~l~~~d~~t~~W~~l~~~~~----~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~  197 (482)
T KOG0379|consen  126 YLFGGTDK----KYRNLNELHSLDLSTRTWSLLSPTGD----PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDL  197 (482)
T ss_pred             EEEccccC----CCCChhheEeccCCCCcEEEecCcCC----CCCCcccceEEEECCEEEEECCccCcccceeeeeeecc
Confidence            99999861    24457799999999999999877643    26788999999999999999953     4689999999


Q ss_pred             CCCcEEeccc--CCCCCCCceeEEEECCEEEEEEeecCCc---eEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCC
Q 046684          228 ESNTWRELSA--PMADRLEFATLVSRNQKLTLIGGTCGGD---ACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKA  299 (373)
Q Consensus       228 ~~~~w~~~~~--~~p~~~~~~~~~~~~g~l~~~gg~~~~~---~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~  299 (373)
                      ++.+|.++..  +.|.+|.++.+++.++++++++|.+...   -++|.++.  .+..|.++..   +|.++.        
T Consensus       198 ~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl--~~~~W~~~~~~g~~p~~R~--------  267 (482)
T KOG0379|consen  198 ETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDL--STWEWKLLPTGGDLPSPRS--------  267 (482)
T ss_pred             ccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeec--ccceeeeccccCCCCCCcc--------
Confidence            9999998733  3467889999999999999999987322   56777777  6688886543   455554        


Q ss_pred             CCCceEEEecCCEEEEEEcCCc-------cEEEEEccccCCcccEEEecccc
Q 046684          300 SWGGTRCAAGNGAICLYREVGL-------GMIIWREDEDKRKWEWVWVGGCC  344 (373)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~~~-------~~~~yd~~~~~~~~~W~~~~~~~  344 (373)
                         .+..+..++.++++||...       .++.||.+  +.  .|.++...+
T Consensus       268 ---~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~--~w~~~~~~~  312 (482)
T KOG0379|consen  268 ---GHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TL--VWSKVESVG  312 (482)
T ss_pred             ---eeeeEEECCEEEEEcCCccccccccccccccccc--cc--ceeeeeccc
Confidence               3666688999999986543       57889999  99  999887665

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.77  E-value=5.3e-17  Score=151.47  Aligned_cols=202  Identities=18%  Similarity=0.224  Sum_probs=167.4

Q ss_pred             eEEEEeCCCCCccccC---CCCCCCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceeccC---CCCCCCCCCe
Q 046684           64 CCYVHNPVSDKWHVLS---LDFLPYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYLP---LLNVSRTNPA  133 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~---~~~~~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp---~~~~~~~~~~  133 (373)
                      .++++|..+..|....   ..+.++.++.++..+..||++||...    ..+++.||+.|++|..+.   ..|.+|..|+
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs  168 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS  168 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence            4999999999998762   34467888999999999999999742    348999999999998874   3577899999


Q ss_pred             EEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc-ccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEE
Q 046684          134 VGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT-YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLY  212 (373)
Q Consensus       134 ~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly  212 (373)
                      +++.+           .++|++||..     ... ...++++||..+.+|.++......    +.+|+.++++.++++++
T Consensus       169 ~~~~g-----------~~l~vfGG~~-----~~~~~~ndl~i~d~~~~~W~~~~~~g~~----P~pR~gH~~~~~~~~~~  228 (482)
T KOG0379|consen  169 ATVVG-----------TKLVVFGGIG-----GTGDSLNDLHIYDLETSTWSELDTQGEA----PSPRYGHAMVVVGNKLL  228 (482)
T ss_pred             EEEEC-----------CEEEEECCcc-----CcccceeeeeeeccccccceecccCCCC----CCCCCCceEEEECCeEE
Confidence            99988           9999999987     433 788999999999999998765332    56889999999999999


Q ss_pred             EEEcCC-----ceEEEEEECCCCcEEecc--cCCCCCCCceeEEEECCEEEEEEeecCC----ceEEEEeecCCCCCCeE
Q 046684          213 WITSAR-----AYSVIGFDIESNTWRELS--APMADRLEFATLVSRNQKLTLIGGTCGG----DACVWELSEGGDDDIWC  281 (373)
Q Consensus       213 ~~gg~~-----~~~i~~yd~~~~~w~~~~--~~~p~~~~~~~~~~~~g~l~~~gg~~~~----~~~i~~~~~~~~~~~W~  281 (373)
                      +++|..     .++++.+|+.+.+|..+.  ...|.+|..+.++..+..++++||....    .-+.|.++.  ++..|.
T Consensus       229 v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~--~~~~w~  306 (482)
T KOG0379|consen  229 VFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDL--ETLVWS  306 (482)
T ss_pred             EEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccccc--ccccee
Confidence            998643     578999999999999663  2357788889999999999999997663    257888887  789999


Q ss_pred             EEEeec
Q 046684          282 LIEKVP  287 (373)
Q Consensus       282 ~v~~~p  287 (373)
                      ++....
T Consensus       307 ~~~~~~  312 (482)
T KOG0379|consen  307 KVESVG  312 (482)
T ss_pred             eeeccc
Confidence            997766

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.77  E-value=2e-17  Score=142.16  Aligned_cols=230  Identities=13%  Similarity=0.156  Sum_probs=162.4

Q ss_pred             CCCCCCceeEE--eeCcEEEEeeCC--CC-----ceEEEEEcCcccceecc--CCCCCCCCCCeEEEEEcCCCCCCCCCc
Q 046684           81 DFLPYPVRPVS--SIGSFLLLRPIN--ST-----ILQLVLCNPFTRQFRYL--PLLNVSRTNPAVGIVMEGPAQHGPFPN  149 (373)
Q Consensus        81 ~~~~~~~~~~~--~~~g~l~~~gg~--~~-----~~~~~v~np~t~~w~~l--p~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (373)
                      ++.||...++.  .-.+-|+++||.  ++     -+++++||..+++|+.+  |..|.+|..+.++++-.          
T Consensus        63 ~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s----------  132 (521)
T KOG1230|consen   63 PPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS----------  132 (521)
T ss_pred             CCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEecc----------
Confidence            44555544332  223445555653  11     24789999999999986  66678888777766652          


Q ss_pred             eEEEEEeccCCCCCCC-CcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC--------Cce
Q 046684          150 FRIYVAGGMSDEPRGG-ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA--------RAY  220 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~--------~~~  220 (373)
                      +.++++||--..+... .....++|+||..+++|..+.....     +.+|.+|.++.....|.++||-        +.+
T Consensus       133 ~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~-----PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyN  207 (521)
T KOG1230|consen  133 NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG-----PSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYN  207 (521)
T ss_pred             CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC-----CCCCccceeEEeeeeEEEEcceecCCCceEEee
Confidence            7899999864222222 2235789999999999999865422     5678899999999999999862        368


Q ss_pred             EEEEEECCCCcEEecccCC--CCCCCceeEEEE-CCEEEEEEeecCCc-----------eEEEEeecC-CCC--CCeEEE
Q 046684          221 SVIGFDIESNTWRELSAPM--ADRLEFATLVSR-NQKLTLIGGTCGGD-----------ACVWELSEG-GDD--DIWCLI  283 (373)
Q Consensus       221 ~i~~yd~~~~~w~~~~~~~--p~~~~~~~~~~~-~g~l~~~gg~~~~~-----------~~i~~~~~~-~~~--~~W~~v  283 (373)
                      ++++||+++=+|+.+..+-  |.+|.++.+.+. +|.|++.||+....           .+.|.|+.. +..  -.|+++
T Consensus       208 Dvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv  287 (521)
T KOG1230|consen  208 DVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV  287 (521)
T ss_pred             eeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec
Confidence            9999999999999994433  678888888887 99999999985431           568888762 112  356777


Q ss_pred             Eee---chhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCC--------------ccEEEEEccccCCcccEEEe
Q 046684          284 EKV---PIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVG--------------LGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       284 ~~~---p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~--------------~~~~~yd~~~~~~~~~W~~~  340 (373)
                      ...   |.++.           ++.++.. +++-+++||..              ++++.||+.  .+  +|...
T Consensus       288 kp~g~kPspRs-----------gfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt--~n--rW~~~  347 (521)
T KOG1230|consen  288 KPSGVKPSPRS-----------GFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT--RN--RWSEG  347 (521)
T ss_pred             cCCCCCCCCCC-----------ceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc--cc--hhhHh
Confidence            653   33332           3555554 56778877532              579999999  99  99865

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.73  E-value=3.2e-16  Score=134.78  Aligned_cols=253  Identities=14%  Similarity=0.126  Sum_probs=173.1

Q ss_pred             CcchHHHHHHHHhcCChhhHHH------hhcccccchhccccccchhhccCCCCceEEEEEecCC-C------eeEEEEe
Q 046684            3 SNLHLDVLANIFSFLSPDSLAR------AKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNR-G------LCCYVHN   69 (373)
Q Consensus         3 ~~Lp~dll~~Il~rLP~~~l~r------~r~Vck~W~~li~~~~f~~~~~~~~~~~l~~~~~~~~-~------~~~~~~d   69 (373)
                      .+|-++.|.+|+..|..+..-.      ...-||+=-+|...         +...-|++|++.-. .      +.++.||
T Consensus        34 ~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~n---------PekeELilfGGEf~ngqkT~vYndLy~Yn  104 (521)
T KOG1230|consen   34 EELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFAN---------PEKEELILFGGEFYNGQKTHVYNDLYSYN  104 (521)
T ss_pred             cccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeec---------cCcceeEEecceeecceeEEEeeeeeEEe
Confidence            3566778899998887775300      01112222222211         33445677665321 1      6888899


Q ss_pred             CCCCCcccc--CCCCCCCCceeEEe-eCcEEEEeeCCCC---------ceEEEEEcCcccceecc--CCCCCCCCCCeEE
Q 046684           70 PVSDKWHVL--SLDFLPYPVRPVSS-IGSFLLLRPINST---------ILQLVLCNPFTRQFRYL--PLLNVSRTNPAVG  135 (373)
Q Consensus        70 ~~~~~w~~~--~~~~~~~~~~~~~~-~~g~l~~~gg~~~---------~~~~~v~np~t~~w~~l--p~~~~~~~~~~~~  135 (373)
                      ...+.|.++  +..+.||.++.+++ ..|.++++||.-.         -.++|+++..|++|.+|  +--|.+|..|-++
T Consensus       105 ~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMv  184 (521)
T KOG1230|consen  105 TKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMV  184 (521)
T ss_pred             ccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeE
Confidence            999999998  55667887765444 4579999998621         24789999999999997  4567899999999


Q ss_pred             EEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEE
Q 046684          136 IVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWI  214 (373)
Q Consensus       136 ~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~  214 (373)
                      +..           .+++++||.... ...-.+.+++++||..+-+|.++.+.-.    -+.+|.+...++. .|.||+.
T Consensus       185 awK-----------~~lilFGGFhd~-nr~y~YyNDvy~FdLdtykW~Klepsga----~PtpRSGcq~~vtpqg~i~vy  248 (521)
T KOG1230|consen  185 AWK-----------RQLILFGGFHDS-NRDYIYYNDVYAFDLDTYKWSKLEPSGA----GPTPRSGCQFSVTPQGGIVVY  248 (521)
T ss_pred             Eee-----------eeEEEEcceecC-CCceEEeeeeEEEeccceeeeeccCCCC----CCCCCCcceEEecCCCcEEEE
Confidence            998           999999997621 1234467899999999999999976321    1455666666665 8999999


Q ss_pred             EcCC-------------ceEEEEEECCCC-----cEEecccCC---CCCCCceeEEEE-CCEEEEEEeecCCc-------
Q 046684          215 TSAR-------------AYSVIGFDIESN-----TWRELSAPM---ADRLEFATLVSR-NQKLTLIGGTCGGD-------  265 (373)
Q Consensus       215 gg~~-------------~~~i~~yd~~~~-----~w~~~~~~~---p~~~~~~~~~~~-~g~l~~~gg~~~~~-------  265 (373)
                      ||.+             -.+++.++++.+     +|..+ .|.   |.+|.++++++. +++-+.+||..+-.       
T Consensus       249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv-kp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~  327 (521)
T KOG1230|consen  249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV-KPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLS  327 (521)
T ss_pred             cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec-cCCCCCCCCCCceeEEEecCCceEEecceecccccchhhh
Confidence            8643             357888888873     67777 443   667877776665 66889999865511       


Q ss_pred             ----eEEEEeecCCCCCCeEEE
Q 046684          266 ----ACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       266 ----~~i~~~~~~~~~~~W~~v  283 (373)
                          .++|-++.  +.++|...
T Consensus       328 g~F~NDLy~fdl--t~nrW~~~  347 (521)
T KOG1230|consen  328 GEFFNDLYFFDL--TRNRWSEG  347 (521)
T ss_pred             hhhhhhhhheec--ccchhhHh
Confidence                23444443  55899765

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.69  E-value=1.5e-15  Score=133.93  Aligned_cols=265  Identities=13%  Similarity=0.123  Sum_probs=176.3

Q ss_pred             cchhccccccchhhccC-----CCCceEEEEEecCCC--eeEEEEeCCCCCccccC---CCCCCCCceeEEeeCcEEEEe
Q 046684           31 HWHTCAKLYHLHSVSQH-----RRPAWFLALPTRNRG--LCCYVHNPVSDKWHVLS---LDFLPYPVRPVSSIGSFLLLR  100 (373)
Q Consensus        31 ~W~~li~~~~f~~~~~~-----~~~~~l~~~~~~~~~--~~~~~~d~~~~~w~~~~---~~~~~~~~~~~~~~~g~l~~~  100 (373)
                      +|+++.....-.-+.|+     .-..++++|++.+++  .++++||..++.|....   ..+.+-..+...+.|..||++
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvF   97 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVF   97 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEE
Confidence            68877766544444444     235567777776654  78999999999997542   122233445667778889999


Q ss_pred             eCCC----CceEEEEEcCcccceeccC-------CCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCC----CC
Q 046684          101 PINS----TILQLVLCNPFTRQFRYLP-------LLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPR----GG  165 (373)
Q Consensus       101 gg~~----~~~~~~v~np~t~~w~~lp-------~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~----~~  165 (373)
                      ||..    ..++++-.....=+|+++.       ++|.+|-.|++.+++           +|.|++||...+..    .-
T Consensus        98 GGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g-----------nKcYlFGGLaNdseDpknNv  166 (830)
T KOG4152|consen   98 GGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG-----------NKCYLFGGLANDSEDPKNNV  166 (830)
T ss_pred             ccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec-----------cEeEEeccccccccCccccc
Confidence            9841    1223333333333467763       345789999999998           99999999653211    11


Q ss_pred             CcccceEEEEECCCCc----eeeecCCCccccccceeccCCceEEE------CCEEEEEEc---CCceEEEEEECCCCcE
Q 046684          166 ATYESMVEMYDSRHDA----WQIIGSMPVEFAVRLTVWTPNESVCT------RGMLYWITS---ARAYSVIGFDIESNTW  232 (373)
Q Consensus       166 ~~~~~~~~~yd~~~~~----W~~~~~~p~~~~~~~~~~~~~~~~~~------~g~ly~~gg---~~~~~i~~yd~~~~~w  232 (373)
                      .++.+++++.+.+.++    |......    ...+.+|..|.++.+      ..++|++||   -+..+++.+|+++-.|
T Consensus       167 PrYLnDlY~leL~~Gsgvv~W~ip~t~----Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W  242 (830)
T KOG4152|consen  167 PRYLNDLYILELRPGSGVVAWDIPITY----GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTW  242 (830)
T ss_pred             chhhcceEEEEeccCCceEEEeccccc----CCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeec
Confidence            3567889998887654    7654322    111345666666655      358999984   4678999999999999


Q ss_pred             Eeccc--CCCCCCCceeEEEECCEEEEEEeec-----C-------------CceEEEEeecCCCCCCeEEEEee--chhh
Q 046684          233 RELSA--PMADRLEFATLVSRNQKLTLIGGTC-----G-------------GDACVWELSEGGDDDIWCLIEKV--PIEM  290 (373)
Q Consensus       233 ~~~~~--~~p~~~~~~~~~~~~g~l~~~gg~~-----~-------------~~~~i~~~~~~~~~~~W~~v~~~--p~~~  290 (373)
                      .+...  ..|.+|.-+..+.+++++|++||.-     +             ..+.+|++++    +.|+.+..-  ....
T Consensus       243 ~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt----~~W~tl~~d~~ed~t  318 (830)
T KOG4152|consen  243 NKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDT----MAWETLLMDTLEDNT  318 (830)
T ss_pred             ccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecc----hheeeeeeccccccc
Confidence            87622  2366677788899999999999841     1             0177999977    999987531  1111


Q ss_pred             hhhhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684          291 GMRLSGGKASWGGTRCAAGNGAICLYREVG  320 (373)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  320 (373)
                      ..      +.+.++.++++|+++|+..|.+
T Consensus       319 iP------R~RAGHCAvAigtRlYiWSGRD  342 (830)
T KOG4152|consen  319 IP------RARAGHCAVAIGTRLYIWSGRD  342 (830)
T ss_pred             cc------cccccceeEEeccEEEEEeccc
Confidence            11      2234688999999999998653

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.65  E-value=2.6e-15  Score=132.55  Aligned_cols=237  Identities=15%  Similarity=0.159  Sum_probs=163.0

Q ss_pred             CCccccC----CCCCCCCceeEEeeCcEEEEeeCCC--CceEEEEEcCcccceecc---CCCCCCCCCCeEEEEEcCCCC
Q 046684           73 DKWHVLS----LDFLPYPVRPVSSIGSFLLLRPINS--TILQLVLCNPFTRQFRYL---PLLNVSRTNPAVGIVMEGPAQ  143 (373)
Q Consensus        73 ~~w~~~~----~~~~~~~~~~~~~~~g~l~~~gg~~--~~~~~~v~np~t~~w~~l---p~~~~~~~~~~~~~~~~~~~~  143 (373)
                      -+|+...    +-+-+|+.|-+.....+|.++||.+  -.+++++||..|++|..-   ...|.+-.  +..++.++   
T Consensus        17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcA--A~GfvcdG---   91 (830)
T KOG4152|consen   17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCA--AFGFVCDG---   91 (830)
T ss_pred             cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchh--hcceEecC---
Confidence            4677652    2345677777889999999988753  245799999999999752   22333322  33333333   


Q ss_pred             CCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC------
Q 046684          144 HGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA------  217 (373)
Q Consensus       144 ~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~------  217 (373)
                            .+|+++||.-    +...+.++++-.-.....|+++.+-+..-..|+++|.+|+-..++++-|++||.      
T Consensus        92 ------trilvFGGMv----EYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD  161 (830)
T KOG4152|consen   92 ------TRILVFGGMV----EYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED  161 (830)
T ss_pred             ------ceEEEEccEe----eeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence                  8999999975    244555555544444566787766443323447788899999999999999952      


Q ss_pred             -------CceEEEEEECCCC----cEEec--ccCCCCCCCceeEEEE------CCEEEEEEeecCCc-eEEEEeecCCCC
Q 046684          218 -------RAYSVIGFDIESN----TWREL--SAPMADRLEFATLVSR------NQKLTLIGGTCGGD-ACVWELSEGGDD  277 (373)
Q Consensus       218 -------~~~~i~~yd~~~~----~w~~~--~~~~p~~~~~~~~~~~------~g~l~~~gg~~~~~-~~i~~~~~~~~~  277 (373)
                             +.++++..++.-+    .|...  ..+.|.+|+.+..+..      ..++++.||..+.. -++|.++.  ++
T Consensus       162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl--~T  239 (830)
T KOG4152|consen  162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDL--DT  239 (830)
T ss_pred             cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEec--ce
Confidence                   3567777777644    36643  1345778888877765      34799999987655 47999998  88


Q ss_pred             CCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-------------------ccEEEEEccccCCcc
Q 046684          278 DIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-------------------LGMIIWREDEDKRKW  335 (373)
Q Consensus       278 ~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~yd~~~~~~~~  335 (373)
                      .+|.+..-   .|.++.           -+....+||++|++||..                   ..+-+.|++  +.  
T Consensus       240 l~W~kp~~~G~~PlPRS-----------LHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld--t~--  304 (830)
T KOG4152|consen  240 LTWNKPSLSGVAPLPRS-----------LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD--TM--  304 (830)
T ss_pred             eecccccccCCCCCCcc-----------cccceeecceeEEecceeeeeccccccccccceeeeccceeeeeec--ch--
Confidence            99998643   333433           277888999999999642                   456778888  88  


Q ss_pred             cEEEec
Q 046684          336 EWVWVG  341 (373)
Q Consensus       336 ~W~~~~  341 (373)
                      +|+-+-
T Consensus       305 ~W~tl~  310 (830)
T KOG4152|consen  305 AWETLL  310 (830)
T ss_pred             heeeee
Confidence            887663

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.58  E-value=3.2e-13  Score=118.88  Aligned_cols=292  Identities=13%  Similarity=0.108  Sum_probs=152.2

Q ss_pred             CCcchHHHHHHHHhcCC-hhhHHHhhcccccchhccccccchhhccCCCCceEEEEEecCCCeeEEEEeCCCCCc-cccC
Q 046684            2 WSNLHLDVLANIFSFLS-PDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKW-HVLS   79 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP-~~~l~r~r~Vck~W~~li~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~w-~~~~   79 (373)
                      |++||+|||..|..||| ..|++|+|+|||+||+.+....-  ....++.|+++.-..... ......|+...+- ..+.
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ls   80 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK--KNPFRTRPLILFNPINPS-ETLTDDRSYISRPGAFLS   80 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc--cCCcccccccccCcccCC-CCccccccccccccceee
Confidence            99999999999999997 55999999999999998864210  000123345443211000 0000011110000 0000


Q ss_pred             CCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCC-------CCCeEEEEEcCCCCCCCCC----
Q 046684           80 LDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSR-------TNPAVGIVMEGPAQHGPFP----  148 (373)
Q Consensus        80 ~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~-------~~~~~~~~~~~~~~~~~~~----  148 (373)
                      ...+-+.........|++...+.......+...||.++.-...++.....       -..+..+....... -...    
T Consensus        81 ~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~-~~~~~~~~  159 (373)
T PLN03215         81 RAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRR-ETRPGYQR  159 (373)
T ss_pred             eeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccccc-ccccceeE
Confidence            00000000111245677776655434567788888887744444311100       00011111100000 0000    


Q ss_pred             ------------ceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEc
Q 046684          149 ------------NFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS  216 (373)
Q Consensus       149 ------------~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg  216 (373)
                                  ++-+++++..           ..+..+.  .+.|+.+....         .....+++++|++|++. 
T Consensus       160 ~~~~~~~~~~~~~~~vl~i~~~-----------g~l~~w~--~~~Wt~l~~~~---------~~~~DIi~~kGkfYAvD-  216 (373)
T PLN03215        160 SALVKVKEGDNHRDGVLGIGRD-----------GKINYWD--GNVLKALKQMG---------YHFSDIIVHKGQTYALD-  216 (373)
T ss_pred             EEEEEeecCCCcceEEEEEeec-----------CcEeeec--CCeeeEccCCC---------ceeeEEEEECCEEEEEc-
Confidence                        0112222211           1122232  48899987542         12346799999999993 


Q ss_pred             CCceEEEEEECCCCcEEecccCC------CCCCCceeEEEECCEEEEEEeecC----------------CceEEEEeecC
Q 046684          217 ARAYSVIGFDIESNTWRELSAPM------ADRLEFATLVSRNQKLTLIGGTCG----------------GDACVWELSEG  274 (373)
Q Consensus       217 ~~~~~i~~yd~~~~~w~~~~~~~------p~~~~~~~~~~~~g~l~~~gg~~~----------------~~~~i~~~~~~  274 (373)
                       ....++++|.+-+ -.++....      ........+++..|+|+++.....                ..++||+++. 
T Consensus       217 -~~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~-  293 (373)
T PLN03215        217 -SIGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD-  293 (373)
T ss_pred             -CCCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC-
Confidence             4567888875321 12221111      011123458889999999987421                1278999987 


Q ss_pred             CCCCCeEEEEeechhhhhhhcCCCCCCCceEEE------ecCCEEEEEEcCCccEEEEEccccCC
Q 046684          275 GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA------AGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       275 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                       +..+|.++..+....+.-..+.     ...+.      ..+|.||+.+..  ...+||++  .+
T Consensus       294 -~~~~WveV~sLgd~aLFlG~~~-----s~sv~a~e~pG~k~NcIYFtdd~--~~~v~~~~--dg  348 (373)
T PLN03215        294 -ELAKWMEVKTLGDNAFVMATDT-----CFSVLAHEFYGCLPNSIYFTEDT--MPKVFKLD--NG  348 (373)
T ss_pred             -CCCcEEEecccCCeEEEEECCc-----cEEEecCCCCCccCCEEEEECCC--cceEEECC--CC
Confidence             8899999999876543211111     12222      236999999766  47799999  87

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.45  E-value=1.1e-11  Score=105.72  Aligned_cols=226  Identities=17%  Similarity=0.267  Sum_probs=151.8

Q ss_pred             eEEeeCcEEEEeeCCCCceEEEEEcCcc--cceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC
Q 046684           89 PVSSIGSFLLLRPINSTILQLVLCNPFT--RQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG  165 (373)
Q Consensus        89 ~~~~~~g~l~~~gg~~~~~~~~v~np~t--~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~  165 (373)
                      .-+..+..+|+.-| +.....+..|...  +.|+++...| .+|.....++++           ++||++||.....+..
T Consensus        41 ~Ga~ig~~~YVGLG-s~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~-----------~kLyvFgG~Gk~~~~~  108 (381)
T COG3055          41 AGALIGDTVYVGLG-SAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIG-----------GKLYVFGGYGKSVSSS  108 (381)
T ss_pred             ccceecceEEEEec-cCCccceehhhhcCCCCceEcccCCCcccccchheeeC-----------CeEEEeeccccCCCCC
Confidence            45566778999766 3345667776654  5799999888 456676777777           9999999986432223


Q ss_pred             CcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-EEEEEEcC---------------------------
Q 046684          166 ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSA---------------------------  217 (373)
Q Consensus       166 ~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~---------------------------  217 (373)
                      .....+++.||+.+++|.++...-      +.....+.++.+++ ++|++||.                           
T Consensus       109 ~~~~nd~Y~y~p~~nsW~kl~t~s------P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~  182 (381)
T COG3055         109 PQVFNDAYRYDPSTNSWHKLDTRS------PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA  182 (381)
T ss_pred             ceEeeeeEEecCCCChhheecccc------ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH
Confidence            445678999999999999987652      23455666677777 99999842                           


Q ss_pred             -----------CceEEEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCc-----eEEEEeecCCCCCCe
Q 046684          218 -----------RAYSVIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGD-----ACVWELSEGGDDDIW  280 (373)
Q Consensus       218 -----------~~~~i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~-----~~i~~~~~~~~~~~W  280 (373)
                                 ....++.|||++++|+.+ ...|. ...+..++.-+++|.++.|.-...     ....++..  +..+|
T Consensus       183 ~yf~~~~~dy~~n~ev~sy~p~~n~W~~~-G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~--~~~~w  259 (381)
T COG3055         183 HYFDKKAEDYFFNKEVLSYDPSTNQWRNL-GENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG--DNLKW  259 (381)
T ss_pred             HHhCCCHHHhcccccccccccccchhhhc-CcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEecc--Cceee
Confidence                       146899999999999998 44443 333334444577799988764322     44555554  67899


Q ss_pred             EEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC------------------------CccEEEEEccccCCccc
Q 046684          281 CLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV------------------------GLGMIIWREDEDKRKWE  336 (373)
Q Consensus       281 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------~~~~~~yd~~~~~~~~~  336 (373)
                      .++..+|.+..... .+.   .+...-..++.+.+.++.                        ..+|+++|    .+  .
T Consensus       260 ~~l~~lp~~~~~~~-eGv---AGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d----~g--~  329 (381)
T COG3055         260 LKLSDLPAPIGSNK-EGV---AGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD----NG--S  329 (381)
T ss_pred             eeccCCCCCCCCCc-ccc---ceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc----CC--c
Confidence            99999887765432 221   111122235666666532                        24566666    45  9


Q ss_pred             EEEeccccc
Q 046684          337 WVWVGGCCL  345 (373)
Q Consensus       337 W~~~~~~~~  345 (373)
                      |+.+..+|.
T Consensus       330 Wk~~GeLp~  338 (381)
T COG3055         330 WKIVGELPQ  338 (381)
T ss_pred             eeeecccCC
Confidence            999888775

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.40  E-value=2.9e-11  Score=103.14  Aligned_cols=226  Identities=16%  Similarity=0.192  Sum_probs=148.5

Q ss_pred             eeEEEEeCC--CCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCC--------CceEEEEEcCcccceeccCCC-CCCCC
Q 046684           63 LCCYVHNPV--SDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINS--------TILQLVLCNPFTRQFRYLPLL-NVSRT  130 (373)
Q Consensus        63 ~~~~~~d~~--~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~--------~~~~~~v~np~t~~w~~lp~~-~~~~~  130 (373)
                      ...+..|..  ...|.++ ..|..+|.....+.++|.||+++|..        ..++.++|||.+++|+++... |....
T Consensus        58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~  137 (381)
T COG3055          58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLV  137 (381)
T ss_pred             ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccc
Confidence            444445544  4589998 46777888888999999999999851        135789999999999998643 33333


Q ss_pred             CCeEEEEEcCCCCCCCCCceEEEEEeccCC--CC----------C-----------------CCCcccceEEEEECCCCc
Q 046684          131 NPAVGIVMEGPAQHGPFPNFRIYVAGGMSD--EP----------R-----------------GGATYESMVEMYDSRHDA  181 (373)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~--~~----------~-----------------~~~~~~~~~~~yd~~~~~  181 (373)
                      .+..+.+..          .+|+++||.+.  ++          .                 .+-.....+..|++.++.
T Consensus       138 G~~~~~~~~----------~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~  207 (381)
T COG3055         138 GASTFSLNG----------TKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQ  207 (381)
T ss_pred             cceeEecCC----------ceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccch
Confidence            334444431          58999998531  00          0                 001124567889999999


Q ss_pred             eeeecCCCccccccceeccCCceEEECCEEEEEEc-----CCceEEEEEECC--CCcEEecccCCCCCCCc-------ee
Q 046684          182 WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS-----ARAYSVIGFDIE--SNTWRELSAPMADRLEF-------AT  247 (373)
Q Consensus       182 W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg-----~~~~~i~~yd~~--~~~w~~~~~~~p~~~~~-------~~  247 (373)
                      |+.+...|      ...++.++++.-++++-++.|     .+...+..++..  ..+|..+ .++|.....       .-
T Consensus       208 W~~~G~~p------f~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l-~~lp~~~~~~~eGvAGaf  280 (381)
T COG3055         208 WRNLGENP------FYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKL-SDLPAPIGSNKEGVAGAF  280 (381)
T ss_pred             hhhcCcCc------ccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeec-cCCCCCCCCCccccceec
Confidence            99998776      445555555555675666643     344555555554  6689998 555543321       11


Q ss_pred             EEEECCEEEEEEeecCC---------------------ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          248 LVSRNQKLTLIGGTCGG---------------------DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       248 ~~~~~g~l~~~gg~~~~---------------------~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      ..-.++.+.+.||..-.                     +-+||.++.    +.|+.+.++|.....           -..
T Consensus       281 ~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l~Y-----------G~s  345 (381)
T COG3055         281 SGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGLAY-----------GVS  345 (381)
T ss_pred             cceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCccc-----------eEE
Confidence            23346777777763210                     057888876    999999999986632           444


Q ss_pred             EecCCEEEEEEcCC
Q 046684          307 AAGNGAICLYREVG  320 (373)
Q Consensus       307 ~~~~~~i~~~~~~~  320 (373)
                      +..++.||++||..
T Consensus       346 ~~~nn~vl~IGGE~  359 (381)
T COG3055         346 LSYNNKVLLIGGET  359 (381)
T ss_pred             EecCCcEEEEcccc
Confidence            55689999998764

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.06  E-value=9.4e-11  Score=72.30  Aligned_cols=43  Identities=35%  Similarity=0.559  Sum_probs=37.5

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      |..||+|++.+||+.||..|+.++..|||+|++++.++.+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~   43 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR   43 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence            6899999999999999999999999999999999988866543

>PF13964 Kelch_6: Kelch motif

Probab=98.89  E-value=4.1e-09  Score=65.96  Aligned_cols=46  Identities=15%  Similarity=0.153  Sum_probs=40.9

Q ss_pred             CCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceeccCCCCCCC
Q 046684           84 PYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYLPLLNVSR  129 (373)
Q Consensus        84 ~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp~~~~~~  129 (373)
                      ||..+++++.++.||++||...    .+++++|||.|++|+++|+||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            5677889999999999999754    578999999999999999999875

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.84  E-value=7.8e-10  Score=68.69  Aligned_cols=42  Identities=29%  Similarity=0.494  Sum_probs=36.0

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS   43 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~   43 (373)
                      |.+||+|++.+||.+|+++++++++.|||+|++++.++.+..
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~   44 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK   44 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence            578999999999999999999999999999999999887654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.75  E-value=4.6e-09  Score=62.80  Aligned_cols=39  Identities=26%  Similarity=0.424  Sum_probs=36.5

Q ss_pred             chHHHHHHHHhcCChhhHHHhhcccccchhccccccchh
Q 046684            5 LHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS   43 (373)
Q Consensus         5 Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~   43 (373)
                      ||+|++.+||++|+..++.+++.|||+|+.++.++.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887653

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.73  E-value=6e-07  Score=68.74  Aligned_cols=84  Identities=24%  Similarity=0.509  Sum_probs=65.5

Q ss_pred             EEECCEEEEEEc---CCceEEEEEECCCCcEEecccC--CCCCCCceeEEEECCEEEEEEeecCCc---eEEEEeecCCC
Q 046684          205 VCTRGMLYWITS---ARAYSVIGFDIESNTWRELSAP--MADRLEFATLVSRNQKLTLIGGTCGGD---ACVWELSEGGD  276 (373)
Q Consensus       205 ~~~~g~ly~~gg---~~~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~~~~~~g~l~~~gg~~~~~---~~i~~~~~~~~  276 (373)
                      +++||.+|+++.   .....|++||+++++|+.++.|  .........++..+|+|.++.......   +++|.++++ +
T Consensus         2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~-~   80 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY-E   80 (129)
T ss_pred             EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc-c
Confidence            679999999973   2468899999999999999554  223345667999999999998766543   999999985 5


Q ss_pred             CCCeEEEEe-echh
Q 046684          277 DDIWCLIEK-VPIE  289 (373)
Q Consensus       277 ~~~W~~v~~-~p~~  289 (373)
                      +++|++... +|..
T Consensus        81 k~~Wsk~~~~lp~~   94 (129)
T PF08268_consen   81 KQEWSKKHIVLPPS   94 (129)
T ss_pred             cceEEEEEEECChH
Confidence            689998865 5543

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF13964 Kelch_6: Kelch motif

Probab=98.72  E-value=3.5e-08  Score=61.68  Aligned_cols=47  Identities=32%  Similarity=0.588  Sum_probs=40.3

Q ss_pred             CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC-CcccceEEEEECCCCceeeecCCCc
Q 046684          128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG-ATYESMVEMYDSRHDAWQIIGSMPV  190 (373)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~  190 (373)
                      +|..+++++++           ++||++||..     . .....++++||+++++|+.+++||.
T Consensus         1 pR~~~s~v~~~-----------~~iyv~GG~~-----~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    1 PRYGHSAVVVG-----------GKIYVFGGYD-----NSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             CCccCEEEEEC-----------CEEEEECCCC-----CCCCccccEEEEcCCCCcEEECCCCCC
Confidence            46677888887           9999999987     4 5677899999999999999999963

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=98.68  E-value=2.7e-06  Score=68.08  Aligned_cols=85  Identities=18%  Similarity=0.362  Sum_probs=60.0

Q ss_pred             EEECCEEEEEEcCCce----EEEEEECCCCcE-EecccCCCCCCC----ceeEEE-ECCEEEEEEeecCC-ceEEEEeec
Q 046684          205 VCTRGMLYWITSARAY----SVIGFDIESNTW-RELSAPMADRLE----FATLVS-RNQKLTLIGGTCGG-DACVWELSE  273 (373)
Q Consensus       205 ~~~~g~ly~~gg~~~~----~i~~yd~~~~~w-~~~~~~~p~~~~----~~~~~~-~~g~l~~~gg~~~~-~~~i~~~~~  273 (373)
                      +++||.+||++.....    .|++||+.++++ ..+  ++|....    ...+.+ .+++|.++...... .++||.+++
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~--~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~   79 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSL--PLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKK   79 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEE--CCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEee
Confidence            7899999999843222    699999999999 666  4443322    334533 37899998643333 489999997


Q ss_pred             CC-CCCCeEEEEeechhhh
Q 046684          274 GG-DDDIWCLIEKVPIEMG  291 (373)
Q Consensus       274 ~~-~~~~W~~v~~~p~~~~  291 (373)
                      ++ ...+|+++..++....
T Consensus        80 ~~~~~~SWtK~~~i~~~~~   98 (164)
T PF07734_consen   80 YGYGKESWTKLFTIDLPPL   98 (164)
T ss_pred             eccCcceEEEEEEEecCCC
Confidence            53 3789999988775544

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.58  E-value=5.8e-08  Score=59.88  Aligned_cols=46  Identities=35%  Similarity=0.647  Sum_probs=38.7

Q ss_pred             CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC-CcccceEEEEECCCCceeeecCCC
Q 046684          128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG-ATYESMVEMYDSRHDAWQIIGSMP  189 (373)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p  189 (373)
                      +|..+++++++           ++||++||..     . ......+++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~-----------~~iyv~GG~~-----~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVG-----------NKIYVIGGYD-----GNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEET-----------TEEEEEEEBE-----STSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEEC-----------CEEEEEeeec-----ccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            35667777777           9999999998     4 677889999999999999998874

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.48  E-value=3.6e-06  Score=71.91  Aligned_cols=42  Identities=26%  Similarity=0.376  Sum_probs=39.3

Q ss_pred             Ccch----HHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684            3 SNLH----LDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         3 ~~Lp----~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      +.||    +++.++||+.|...+|+.+..|||+|+++++++...+.
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk  121 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK  121 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence            4689    99999999999999999999999999999999988776

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.42  E-value=6.5e-07  Score=55.56  Aligned_cols=49  Identities=22%  Similarity=0.430  Sum_probs=38.5

Q ss_pred             CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCC
Q 046684          128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMP  189 (373)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p  189 (373)
                      +|..+++++.+           +|||++||..  .........++++||+++++|+.++.+|
T Consensus         1 ~r~~hs~~~~~-----------~kiyv~GG~~--~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLD-----------GKIYVFGGYG--TDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEEC-----------CEEEEECCcc--cCCCCcccceeEEEECCCCEEeecCCCC
Confidence            35677777777           9999999991  0015566789999999999999998763

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.39  E-value=3.4e-07  Score=56.40  Aligned_cols=43  Identities=14%  Similarity=0.175  Sum_probs=36.9

Q ss_pred             CCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceeccCCCC
Q 046684           84 PYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYLPLLN  126 (373)
Q Consensus        84 ~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp~~~  126 (373)
                      ||..+++++.++.||++||...    .+++++||+.+++|+++|+||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            4677889999999999999733    567999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.37  E-value=1.4e-05  Score=67.17  Aligned_cols=159  Identities=10%  Similarity=0.085  Sum_probs=104.2

Q ss_pred             cceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC--ceEEEEEECCC----CcEEecccCCCCC
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR--AYSVIGFDIES----NTWRELSAPMADR  242 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--~~~i~~yd~~~----~~w~~~~~~~p~~  242 (373)
                      ...-.+||+.+++++.+...       ....+...+..-||.+...||..  ...+..|++.+    ..|.+....|...
T Consensus        45 ~a~s~~yD~~tn~~rpl~v~-------td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~  117 (243)
T PF07250_consen   45 PAHSVEYDPNTNTFRPLTVQ-------TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG  117 (243)
T ss_pred             eEEEEEEecCCCcEEeccCC-------CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC
Confidence            34467899999999987654       33445555566789999998653  46688899876    6798874557777


Q ss_pred             CCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCc
Q 046684          243 LEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGL  321 (373)
Q Consensus       243 ~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  321 (373)
                      |-..+...+ +|+++++||......+.|....  .......+.-+........    ....++....-+|+||++...  
T Consensus       118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~--~~~~~~~~~~l~~~~~~~~----~nlYP~~~llPdG~lFi~an~--  189 (243)
T PF07250_consen  118 RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG--PGPGPVTLPFLSQTSDTLP----NNLYPFVHLLPDGNLFIFANR--  189 (243)
T ss_pred             CccccceECCCCCEEEEeCcCCCcccccCCcc--CCCCceeeecchhhhccCc----cccCceEEEcCCCCEEEEEcC--
Confidence            876666655 8999999998855555554322  1111111111211100000    112368888889999999876  


Q ss_pred             cEEEEEccccCCcccE-EEecccccC
Q 046684          322 GMIIWREDEDKRKWEW-VWVGGCCLT  346 (373)
Q Consensus       322 ~~~~yd~~~~~~~~~W-~~~~~~~~~  346 (373)
                      .-.+||..  ++  ++ +.+|..|-.
T Consensus       190 ~s~i~d~~--~n--~v~~~lP~lPg~  211 (243)
T PF07250_consen  190 GSIIYDYK--TN--TVVRTLPDLPGG  211 (243)
T ss_pred             CcEEEeCC--CC--eEEeeCCCCCCC
Confidence            58889999  99  76 667776643

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>smart00612 Kelch Kelch domain

Probab=98.31  E-value=1.3e-06  Score=53.72  Aligned_cols=47  Identities=34%  Similarity=0.636  Sum_probs=37.1

Q ss_pred             EEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECC
Q 046684          151 RIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG  209 (373)
Q Consensus       151 kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g  209 (373)
                      +||++||..     .......+++||+++++|+.++++|       ..+..++++.++|
T Consensus         1 ~iyv~GG~~-----~~~~~~~v~~yd~~~~~W~~~~~~~-------~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFD-----GGQRLKSVEVYDPETNKWTPLPSMP-------TPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCC-----CCceeeeEEEECCCCCeEccCCCCC-------CccccceEEEeCC
Confidence            489999986     4456788999999999999999884       4566666666654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.31  E-value=0.00036  Score=59.52  Aligned_cols=215  Identities=13%  Similarity=0.125  Sum_probs=120.2

Q ss_pred             eEEEEeCCCC--CccccCCCCCCCCcee--EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCCeEEEE
Q 046684           64 CCYVHNPVSD--KWHVLSLDFLPYPVRP--VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIV  137 (373)
Q Consensus        64 ~~~~~d~~~~--~w~~~~~~~~~~~~~~--~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~  137 (373)
                      .+.++|+.+.  .|..-...  ......  ....++.+|+..+   ...++.+|+.|++  |+.-.  +...... ....
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~   75 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL--PGPISGA-PVVD   75 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC--SSCGGSG-EEEE
T ss_pred             EEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec--cccccce-eeec
Confidence            4556777554  35542111  122222  3448999999865   6899999999987  54322  2221111 2222


Q ss_pred             EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--ee-eecCCCccccccceeccCCceEEECCEEEEE
Q 046684          138 MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQ-IIGSMPVEFAVRLTVWTPNESVCTRGMLYWI  214 (373)
Q Consensus       138 ~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~-~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~  214 (373)
                      +           +++|+....           ..+..+|..+++  |+ .....|.     .........++.++.+|+.
T Consensus        76 ~-----------~~v~v~~~~-----------~~l~~~d~~tG~~~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  128 (238)
T PF13360_consen   76 G-----------GRVYVGTSD-----------GSLYALDAKTGKVLWSIYLTSSPP-----AGVRSSSSPAVDGDRLYVG  128 (238)
T ss_dssp             T-----------TEEEEEETT-----------SEEEEEETTTSCEEEEEEE-SSCT-----CSTB--SEEEEETTEEEEE
T ss_pred             c-----------cccccccce-----------eeeEecccCCcceeeeeccccccc-----cccccccCceEecCEEEEE
Confidence            2           778876522           278999987776  98 4443221     1112233344556777776


Q ss_pred             EcCCceEEEEEECCCCc--EEecccCCCCCCC--------ceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          215 TSARAYSVIGFDIESNT--WRELSAPMADRLE--------FATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       215 gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~--------~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      .  ....+.++|+++++  |..- ...+....        ....+..+|.+|+...... -+.+ +...  ....|+.. 
T Consensus       129 ~--~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~-d~~t--g~~~w~~~-  200 (238)
T PF13360_consen  129 T--SSGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAV-DLAT--GEKLWSKP-  200 (238)
T ss_dssp             E--TCSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEE-ETTT--TEEEEEEC-
T ss_pred             e--ccCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEE-ECCC--CCEEEEec-
Confidence            3  36789999999774  6654 33322111        1233444677777654332 1233 5544  22236222 


Q ss_pred             eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEE
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWV  338 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~  338 (373)
                       +.. .            .......++.||+.. ..+.+.++|++  +++..|+
T Consensus       201 -~~~-~------------~~~~~~~~~~l~~~~-~~~~l~~~d~~--tG~~~W~  237 (238)
T PF13360_consen  201 -ISG-I------------YSLPSVDGGTLYVTS-SDGRLYALDLK--TGKVVWQ  237 (238)
T ss_dssp             -SS--E------------CECEECCCTEEEEEE-TTTEEEEEETT--TTEEEEE
T ss_pred             -CCC-c------------cCCceeeCCEEEEEe-CCCEEEEEECC--CCCEEeE
Confidence             221 1            133567788999887 56789999999  9977786

...

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.27  E-value=1.3e-06  Score=54.31  Aligned_cols=47  Identities=23%  Similarity=0.395  Sum_probs=28.6

Q ss_pred             CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC-cccceEEEEECCCCceeeecCCC
Q 046684          128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA-TYESMVEMYDSRHDAWQIIGSMP  189 (373)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p  189 (373)
                      +|..++++...+          ++||++||..     .. ....++++||.++++|++++++|
T Consensus         1 pR~~h~~~~~~~----------~~i~v~GG~~-----~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGD----------NSIYVFGGRD-----SSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-T----------TEEEEE--EE-----E-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeC----------CeEEEECCCC-----CCCcccCCEEEEECCCCEEEECCCCC
Confidence            366677776642          7899999987     43 57889999999999999998775

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=98.23  E-value=2.1e-06  Score=76.93  Aligned_cols=200  Identities=15%  Similarity=0.174  Sum_probs=121.4

Q ss_pred             cCcccceeccCCCC----------CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCce
Q 046684          113 NPFTRQFRYLPLLN----------VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW  182 (373)
Q Consensus       113 np~t~~w~~lp~~~----------~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W  182 (373)
                      -+.+-.|.++++..          ..|..+-++...    .+     +.||+.||.+     +.....++|.|+-..+.|
T Consensus       235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~----~~-----~CiYLYGGWd-----G~~~l~DFW~Y~v~e~~W  300 (723)
T KOG2437|consen  235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDV----QT-----ECVYLYGGWD-----GTQDLADFWAYSVKENQW  300 (723)
T ss_pred             ccccccccccCchhhcccccccCccccCcceEEEeC----CC-----cEEEEecCcc-----cchhHHHHHhhcCCccee
Confidence            45677788877543          346666655443    11     6899999998     888889999999999999


Q ss_pred             eeecCCCccccccceeccCCceEEECC--EEEEEEc----------CCceEEEEEECCCCcEEecccCC-----CCCCCc
Q 046684          183 QIIGSMPVEFAVRLTVWTPNESVCTRG--MLYWITS----------ARAYSVIGFDIESNTWRELSAPM-----ADRLEF  245 (373)
Q Consensus       183 ~~~~~~p~~~~~~~~~~~~~~~~~~~g--~ly~~gg----------~~~~~i~~yd~~~~~w~~~~~~~-----p~~~~~  245 (373)
                      ..+..-...    +..|..+.++....  ++|.+|.          ....+++.||..++.|..+....     |.....
T Consensus       301 ~~iN~~t~~----PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD  376 (723)
T KOG2437|consen  301 TCINRDTEG----PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD  376 (723)
T ss_pred             EEeecCCCC----CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeec
Confidence            988654311    33455566665554  8999972          12578999999999999883322     223345


Q ss_pred             eeEEEECCE--EEEEEeecCCc-----eEEEEeecCCCCCCeEEEEeechhhhhhhcCCC--CCCCceEEEecCCEEEEE
Q 046684          246 ATLVSRNQK--LTLIGGTCGGD-----ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGK--ASWGGTRCAAGNGAICLY  316 (373)
Q Consensus       246 ~~~~~~~g~--l~~~gg~~~~~-----~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~  316 (373)
                      +++++.+++  ||++||..-..     --.|.++.  ....|....+-....-.. ....  ..-.+......+..+|++
T Consensus       377 HqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~--~~~~w~~l~e~~~~~~~v-vE~~~sR~ghcmE~~~~n~~ly~f  453 (723)
T KOG2437|consen  377 HQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNC--QCQTWKLLREDSCNAGPV-VEDIQSRIGHCMEFHSKNRCLYVF  453 (723)
T ss_pred             ceeeEecCcceEEEecCeeccCCCccccceEEEec--CCccHHHHHHHHhhcCcc-hhHHHHHHHHHHHhcCCCCeEEec
Confidence            678887777  99999863221     12444443  446776654311100000 0000  000134445567788888


Q ss_pred             EcCCc-----cEEEEEccccCC
Q 046684          317 REVGL-----GMIIWREDEDKR  333 (373)
Q Consensus       317 ~~~~~-----~~~~yd~~~~~~  333 (373)
                      ||...     -.+.||+..|+.
T Consensus       454 ggq~s~~El~L~f~y~I~~E~~  475 (723)
T KOG2437|consen  454 GGQRSKTELNLFFSYDIDSEHV  475 (723)
T ss_pred             cCcccceEEeehhcceeccccc
Confidence            76542     245576664443

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.16  E-value=2.3e-05  Score=65.94  Aligned_cols=152  Identities=14%  Similarity=0.177  Sum_probs=97.2

Q ss_pred             eEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCC-CCceEEEEEcCcc----cceeccC-CCCCCCCCCeEEEE
Q 046684           64 CCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPIN-STILQLVLCNPFT----RQFRYLP-LLNVSRTNPAVGIV  137 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~-~~~~~~~v~np~t----~~w~~lp-~~~~~~~~~~~~~~  137 (373)
                      ....||+.+++++.+....-....-.....||.+...||. .+.+.+..|+|.+    ..|.+.+ .|..+|++++...+
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            3445999999998875443333332344558888888886 4456788899886    6798876 58999999999888


Q ss_pred             EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCC-----ceeeecCCCccccccceeccCCceEEECCEEE
Q 046684          138 MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHD-----AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLY  212 (373)
Q Consensus       138 ~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly  212 (373)
                      .+          ++++|+||..         ....|.+.....     .|..+......   .....+...-+.-+|+|+
T Consensus       127 ~D----------G~vlIvGG~~---------~~t~E~~P~~~~~~~~~~~~~l~~~~~~---~~~nlYP~~~llPdG~lF  184 (243)
T PF07250_consen  127 PD----------GRVLIVGGSN---------NPTYEFWPPKGPGPGPVTLPFLSQTSDT---LPNNLYPFVHLLPDGNLF  184 (243)
T ss_pred             CC----------CCEEEEeCcC---------CCcccccCCccCCCCceeeecchhhhcc---CccccCceEEEcCCCCEE
Confidence            75          8899999875         223455544221     12222211100   012233333455689999


Q ss_pred             EEEcCCceEEEEEECCCCcE-EecccCCCC
Q 046684          213 WITSARAYSVIGFDIESNTW-RELSAPMAD  241 (373)
Q Consensus       213 ~~gg~~~~~i~~yd~~~~~w-~~~~~~~p~  241 (373)
                      +++.   ..-..||..++++ +.+ ..+|.
T Consensus       185 i~an---~~s~i~d~~~n~v~~~l-P~lPg  210 (243)
T PF07250_consen  185 IFAN---RGSIIYDYKTNTVVRTL-PDLPG  210 (243)
T ss_pred             EEEc---CCcEEEeCCCCeEEeeC-CCCCC
Confidence            9963   3567789999987 666 45554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.10  E-value=5.3e-06  Score=51.43  Aligned_cols=43  Identities=12%  Similarity=0.060  Sum_probs=37.1

Q ss_pred             CcEEEEeeCCC-----CceEEEEEcCcccceeccCCCCCCCCCCeEEE
Q 046684           94 GSFLLLRPINS-----TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGI  136 (373)
Q Consensus        94 ~g~l~~~gg~~-----~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~  136 (373)
                      |+.+|++||..     ..+++++||+.+++|++++++|.+|..+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            57899999875     14579999999999999999999999988875

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.07  E-value=4e-06  Score=52.05  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=27.3

Q ss_pred             CCCceeEEee-CcEEEEeeCCCC----ceEEEEEcCcccceeccCCCC
Q 046684           84 PYPVRPVSSI-GSFLLLRPINST----ILQLVLCNPFTRQFRYLPLLN  126 (373)
Q Consensus        84 ~~~~~~~~~~-~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp~~~  126 (373)
                      ||..++++.. ++.||++||...    .+++++||+.+++|++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            4667777777 589999999733    457999999999999998876

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.04  E-value=1.2e-05  Score=49.74  Aligned_cols=43  Identities=9%  Similarity=0.010  Sum_probs=36.6

Q ss_pred             CCCceeEEeeCcEEEEeeCC---C---CceEEEEEcCcccceeccCCCC
Q 046684           84 PYPVRPVSSIGSFLLLRPIN---S---TILQLVLCNPFTRQFRYLPLLN  126 (373)
Q Consensus        84 ~~~~~~~~~~~g~l~~~gg~---~---~~~~~~v~np~t~~w~~lp~~~  126 (373)
                      +|..++++..++.||++||.   .   ..+++++||+.|++|+++++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            46778899999999999997   1   2457999999999999998874

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=97.95  E-value=2e-05  Score=48.84  Aligned_cols=47  Identities=28%  Similarity=0.534  Sum_probs=36.3

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC  206 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~  206 (373)
                      +++|++||...   ......+++++||+.+++|+++..+|       .+|..+++++
T Consensus         2 ~~~~vfGG~~~---~~~~~~nd~~~~~~~~~~W~~~~~~P-------~~R~~h~~~~   48 (49)
T PF13415_consen    2 NKLYVFGGYDD---DGGTRLNDVWVFDLDTNTWTRIGDLP-------PPRSGHTATV   48 (49)
T ss_pred             CEEEEECCcCC---CCCCEecCEEEEECCCCEEEECCCCC-------CCccceEEEE
Confidence            78999999862   13556789999999999999997774       4566666554

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=97.94  E-value=8e-06  Score=73.31  Aligned_cols=151  Identities=14%  Similarity=0.217  Sum_probs=99.4

Q ss_pred             CCceeeecCCC---ccccccceeccCCceEEECC--EEEEEEcCC----ceEEEEEECCCCcEEecccC--CCCCCCcee
Q 046684          179 HDAWQIIGSMP---VEFAVRLTVWTPNESVCTRG--MLYWITSAR----AYSVIGFDIESNTWRELSAP--MADRLEFAT  247 (373)
Q Consensus       179 ~~~W~~~~~~p---~~~~~~~~~~~~~~~~~~~g--~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~  247 (373)
                      +-.|.++....   ..+..-+..|.++.++.-.+  ++|..||..    ..+.++|+...++|..+...  .|..|..+.
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR  317 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR  317 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence            35688775532   01112245678888887765  999998643    56789999999999987332  366777777


Q ss_pred             EEEE--CCEEEEEEeecCCc--------eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecC--CEEEE
Q 046684          248 LVSR--NQKLTLIGGTCGGD--------ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGN--GAICL  315 (373)
Q Consensus       248 ~~~~--~g~l~~~gg~~~~~--------~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~i~~  315 (373)
                      ++..  ..+||++|.+-+..        .++|.++-  +++.|..+..-...-     ++......+.+++++  +.||+
T Consensus       318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi--~~~~W~~ls~dt~~d-----GGP~~vfDHqM~Vd~~k~~iyV  390 (723)
T KOG2437|consen  318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDI--DTNTWMLLSEDTAAD-----GGPKLVFDHQMCVDSEKHMIYV  390 (723)
T ss_pred             hhhhhhHhHHhhhhhccccccccccccccceEEEec--CCceeEEeccccccc-----CCcceeecceeeEecCcceEEE
Confidence            6654  45899998653321        67999987  889999875422110     011111124445554  45999


Q ss_pred             EEcCC--------ccEEEEEccccCCcccEEEe
Q 046684          316 YREVG--------LGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       316 ~~~~~--------~~~~~yd~~~~~~~~~W~~~  340 (373)
                      +||..        ..++.||..  ..  .|+.+
T Consensus       391 fGGr~~~~~e~~f~GLYaf~~~--~~--~w~~l  419 (723)
T KOG2437|consen  391 FGGRILTCNEPQFSGLYAFNCQ--CQ--TWKLL  419 (723)
T ss_pred             ecCeeccCCCccccceEEEecC--Cc--cHHHH
Confidence            99753        569999999  88  88765

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.94  E-value=0.0016  Score=61.93  Aligned_cols=275  Identities=15%  Similarity=0.107  Sum_probs=146.4

Q ss_pred             CcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh-ccC---CC---CceEEEEEec---CCCeeEEE-EeCC
Q 046684            3 SNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV-SQH---RR---PAWFLALPTR---NRGLCCYV-HNPV   71 (373)
Q Consensus         3 ~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~-~~~---~~---~~~l~~~~~~---~~~~~~~~-~d~~   71 (373)
                      +.||.|+...||..|+.++++.++.||+.|+.++.+...... .+.   ..   ..+-......   .....++. ..-.
T Consensus       109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~~  188 (537)
T KOG0274|consen  109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFRL  188 (537)
T ss_pred             hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhhc
Confidence            568999999999999999999999999999999988766653 221   11   1111110000   00001100 1122


Q ss_pred             CCCccccCCCC----CC---CCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCC
Q 046684           72 SDKWHVLSLDF----LP---YPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQH  144 (373)
Q Consensus        72 ~~~w~~~~~~~----~~---~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~  144 (373)
                      .+.|.......    .+   ....+....+|.+.....   ...+.+||..++.-...+.....-.-.++.+.. +    
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~---~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~----  260 (537)
T KOG0274|consen  189 SKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSD---DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-G----  260 (537)
T ss_pred             cccccccccccceeecccCcchhhhheeecCeEEecCC---CceeEEeecccceEEEeeccCCCCCceeEEEec-C----
Confidence            23444332211    11   111122233444443333   456679999888765443222222222333331 0    


Q ss_pred             CCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEE
Q 046684          145 GPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIG  224 (373)
Q Consensus       145 ~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~  224 (373)
                           ..+++.|-.+          ..+.++|..++.=...-..          ......+......+..+|.....|.+
T Consensus       261 -----~~~lvsgS~D----------~t~rvWd~~sg~C~~~l~g----------h~stv~~~~~~~~~~~sgs~D~tVkV  315 (537)
T KOG0274|consen  261 -----GDKLVSGSTD----------KTERVWDCSTGECTHSLQG----------HTSSVRCLTIDPFLLVSGSRDNTVKV  315 (537)
T ss_pred             -----CCEEEEEecC----------CcEEeEecCCCcEEEEecC----------CCceEEEEEccCceEeeccCCceEEE
Confidence                 2334444333          4566777666654433221          01111123345555565677889999


Q ss_pred             EECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce
Q 046684          225 FDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT  304 (373)
Q Consensus       225 yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~  304 (373)
                      +|..+++-..+ .--  +......+.+++.+.+.|..++ .+.+|+...      -+.+..+..-..           ..
T Consensus       316 W~v~n~~~l~l-~~~--h~~~V~~v~~~~~~lvsgs~d~-~v~VW~~~~------~~cl~sl~gH~~-----------~V  374 (537)
T KOG0274|consen  316 WDVTNGACLNL-LRG--HTGPVNCVQLDEPLLVSGSYDG-TVKVWDPRT------GKCLKSLSGHTG-----------RV  374 (537)
T ss_pred             EeccCcceEEE-ecc--ccccEEEEEecCCEEEEEecCc-eEEEEEhhh------ceeeeeecCCcc-----------eE
Confidence            99998776655 111  2233345666777777777666 689999853      344444443111           13


Q ss_pred             EEEecCC-EEEEEEcCCccEEEEEccccCC
Q 046684          305 RCAAGNG-AICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       305 ~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+...++ ..++-|..+..+.++|++  +.
T Consensus       375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~--~~  402 (537)
T KOG0274|consen  375 YSLIVDSENRLLSGSLDTTIKVWDLR--TK  402 (537)
T ss_pred             EEEEecCcceEEeeeeccceEeecCC--ch
Confidence            3334444 666666666679999998  66

>smart00612 Kelch Kelch domain

Probab=97.84  E-value=4.1e-05  Score=46.83  Aligned_cols=42  Identities=14%  Similarity=0.256  Sum_probs=34.9

Q ss_pred             EEEeeCCC---CceEEEEEcCcccceeccCCCCCCCCCCeEEEEE
Q 046684           97 LLLRPINS---TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVM  138 (373)
Q Consensus        97 l~~~gg~~---~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~  138 (373)
                      ||++||..   ...++++|||.+++|..+++|+.+|..+++++++
T Consensus         2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~   46 (47)
T smart00612        2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN   46 (47)
T ss_pred             EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence            78888863   2467899999999999999999999888877653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.81  E-value=0.014  Score=53.97  Aligned_cols=218  Identities=13%  Similarity=0.065  Sum_probs=124.3

Q ss_pred             eeEEEEeCCCC--Ccccc-CCC--CCC-----CCceeEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCC
Q 046684           63 LCCYVHNPVSD--KWHVL-SLD--FLP-----YPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRT  130 (373)
Q Consensus        63 ~~~~~~d~~~~--~w~~~-~~~--~~~-----~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~  130 (373)
                      ..+.++|..+.  .|..- ...  ...     ......+..++.||+.+.   ...++.+|+.|++  |+.-  ++... 
T Consensus        79 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~--~~~~~-  152 (394)
T PRK11138         79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVAWQTK--VAGEA-  152 (394)
T ss_pred             CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCccccc--CCCce-
Confidence            46777888765  47643 210  001     112235667899998765   4679999999986  6542  11111 


Q ss_pred             CCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEEC
Q 046684          131 NPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTR  208 (373)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~  208 (373)
                      ..+..+.+           +++|+..+.           ..++.+|.++++  |+.-...|.     ...+...+.+..+
T Consensus       153 ~ssP~v~~-----------~~v~v~~~~-----------g~l~ald~~tG~~~W~~~~~~~~-----~~~~~~~sP~v~~  205 (394)
T PRK11138        153 LSRPVVSD-----------GLVLVHTSN-----------GMLQALNESDGAVKWTVNLDVPS-----LTLRGESAPATAF  205 (394)
T ss_pred             ecCCEEEC-----------CEEEEECCC-----------CEEEEEEccCCCEeeeecCCCCc-----ccccCCCCCEEEC
Confidence            11112222           677764322           368999998876  876544321     1112223446677


Q ss_pred             CEEEEEEcCCceEEEEEECCCC--cEEecccCCCCC--------CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCC
Q 046684          209 GMLYWITSARAYSVIGFDIESN--TWRELSAPMADR--------LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDD  278 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~--------~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~  278 (373)
                      |.+|+..  ....+.++|++++  .|+.- ...+..        .....-+..++.+|+.+..  ..+..+++..  .+.
T Consensus       206 ~~v~~~~--~~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~--g~l~ald~~t--G~~  278 (394)
T PRK11138        206 GGAIVGG--DNGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN--GNLVALDLRS--GQI  278 (394)
T ss_pred             CEEEEEc--CCCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEECCEEEEEEcC--CeEEEEECCC--CCE
Confidence            8887763  4567999999876  47642 111111        0112345568888886532  2345555554  345


Q ss_pred             CeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEE
Q 046684          279 IWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       279 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~  339 (373)
                      .|+.-  ...              ....+..++.||+... .+.++++|.+  +++..|+.
T Consensus       279 ~W~~~--~~~--------------~~~~~~~~~~vy~~~~-~g~l~ald~~--tG~~~W~~  320 (394)
T PRK11138        279 VWKRE--YGS--------------VNDFAVDGGRIYLVDQ-NDRVYALDTR--GGVELWSQ  320 (394)
T ss_pred             EEeec--CCC--------------ccCcEEECCEEEEEcC-CCeEEEEECC--CCcEEEcc
Confidence            68752  111              1123456889998763 4589999999  88667864

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=1.2e-05  Score=68.15  Aligned_cols=43  Identities=28%  Similarity=0.470  Sum_probs=40.4

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      |..||||+++.||+.||.|+|.++..|||+|+++.++...+..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~  140 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT  140 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence            7889999999999999999999999999999999998877765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.74  E-value=0.0095  Score=55.08  Aligned_cols=200  Identities=11%  Similarity=0.060  Sum_probs=111.7

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eec-cCCCCC-------CCCCCeEEEEEcCCCCCCCCCceEEEEEeccC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRY-LPLLNV-------SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMS  159 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~-lp~~~~-------~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~  159 (373)
                      .+..+|.||+.+.   ...++.+|..|++  |+. ++....       .......++.+           ++||+.+ .+
T Consensus        65 Pvv~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~v~v~~-~~  129 (394)
T PRK11138         65 PAVAYNKVYAADR---AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG-----------GKVYIGS-EK  129 (394)
T ss_pred             cEEECCEEEEECC---CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC-----------CEEEEEc-CC
Confidence            4567999999876   4678999999876  754 332100       01111122222           7788643 22


Q ss_pred             CCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc--EEec
Q 046684          160 DEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT--WREL  235 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~--w~~~  235 (373)
                                ..++.+|.++++  |+.-..-+          ...+.++.++.+|+..  ....++++|+++++  |+.-
T Consensus       130 ----------g~l~ald~~tG~~~W~~~~~~~----------~~ssP~v~~~~v~v~~--~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        130 ----------GQVYALNAEDGEVAWQTKVAGE----------ALSRPVVSDGLVLVHT--SNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             ----------CEEEEEECCCCCCcccccCCCc----------eecCCEEECCEEEEEC--CCCEEEEEEccCCCEeeeec
Confidence                      368999988765  87543221          1123466789988863  35689999998775  7764


Q ss_pred             ccCCCCC--CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh--hhhcCCCCCCCceEEEecCC
Q 046684          236 SAPMADR--LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG--MRLSGGKASWGGTRCAAGNG  311 (373)
Q Consensus       236 ~~~~p~~--~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~--~~~~~~~~~~~~~~~~~~~~  311 (373)
                       ...|..  +....-+..+|.+|+..+  ...+...+.++  ....|+.-...+....  ..+...     ...-+..++
T Consensus       188 -~~~~~~~~~~~~sP~v~~~~v~~~~~--~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~-----~~sP~v~~~  257 (394)
T PRK11138        188 -LDVPSLTLRGESAPATAFGGAIVGGD--NGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDV-----DTTPVVVGG  257 (394)
T ss_pred             -CCCCcccccCCCCCEEECCEEEEEcC--CCEEEEEEccC--ChhhheeccccCCCccchhccccc-----CCCcEEECC
Confidence             222211  111233445677666443  22234445544  4456875322221110  000000     112234578


Q ss_pred             EEEEEEcCCccEEEEEccccCCcccEEE
Q 046684          312 AICLYREVGLGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       312 ~i~~~~~~~~~~~~yd~~~~~~~~~W~~  339 (373)
                      .+|+.+. .+.+.++|++  +++..|+.
T Consensus       258 ~vy~~~~-~g~l~ald~~--tG~~~W~~  282 (394)
T PRK11138        258 VVYALAY-NGNLVALDLR--SGQIVWKR  282 (394)
T ss_pred             EEEEEEc-CCeEEEEECC--CCCEEEee
Confidence            8888653 4589999999  88777875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.72  E-value=0.029  Score=51.57  Aligned_cols=215  Identities=10%  Similarity=0.085  Sum_probs=120.5

Q ss_pred             eeEEEEeCCCC--CccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCCeEEEEE
Q 046684           63 LCCYVHNPVSD--KWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIVM  138 (373)
Q Consensus        63 ~~~~~~d~~~~--~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~  138 (373)
                      ..++++|..+.  .|..-....   .....+..++.+|+...   ...++.+|+.|++  |+.-  ++... .....+.+
T Consensus        75 g~v~a~d~~tG~~~W~~~~~~~---~~~~p~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~--~~~~~-~~~p~v~~  145 (377)
T TIGR03300        75 GTVVALDAETGKRLWRVDLDER---LSGGVGADGGLVFVGTE---KGEVIALDAEDGKELWRAK--LSSEV-LSPPLVAN  145 (377)
T ss_pred             CeEEEEEccCCcEeeeecCCCC---cccceEEcCCEEEEEcC---CCEEEEEECCCCcEeeeec--cCcee-ecCCEEEC
Confidence            46788998765  475431111   11234556888888665   4689999998886  6542  11111 01111222


Q ss_pred             cCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEc
Q 046684          139 EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS  216 (373)
Q Consensus       139 ~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg  216 (373)
                                 +++|+..+.           ..++.+|.++++  |+.-...+.     .........+..++.+|+.  
T Consensus       146 -----------~~v~v~~~~-----------g~l~a~d~~tG~~~W~~~~~~~~-----~~~~~~~sp~~~~~~v~~~--  196 (377)
T TIGR03300       146 -----------GLVVVRTND-----------GRLTALDAATGERLWTYSRVTPA-----LTLRGSASPVIADGGVLVG--  196 (377)
T ss_pred             -----------CEEEEECCC-----------CeEEEEEcCCCceeeEEccCCCc-----eeecCCCCCEEECCEEEEE--
Confidence                       666664322           358899988765  775433221     1112223446677777654  


Q ss_pred             CCceEEEEEECCCC--cEEecccCCCCCC--------CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          217 ARAYSVIGFDIESN--TWRELSAPMADRL--------EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       217 ~~~~~i~~yd~~~~--~w~~~~~~~p~~~--------~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      .....+.++|++++  .|+.- ...+...        .....+..++.+|+...  ...+..++.++  .+..|+.-  .
T Consensus       197 ~~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~t--G~~~W~~~--~  269 (377)
T TIGR03300       197 FAGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLRS--GRVLWKRD--A  269 (377)
T ss_pred             CCCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEEECCEEEEEEc--CCEEEEEECCC--CcEEEeec--c
Confidence            34568999999876  47543 1211110        11233445788888653  22356666655  44557653  1


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEE
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~  339 (373)
                      +  .            ....+..++.||+.. ..+.+.++|.+  +++..|+.
T Consensus       270 ~--~------------~~~p~~~~~~vyv~~-~~G~l~~~d~~--tG~~~W~~  305 (377)
T TIGR03300       270 S--S------------YQGPAVDDNRLYVTD-ADGVVVALDRR--SGSELWKN  305 (377)
T ss_pred             C--C------------ccCceEeCCEEEEEC-CCCeEEEEECC--CCcEEEcc
Confidence            1  0            122335688888865 44579999999  88667875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=97.72  E-value=0.023  Score=48.24  Aligned_cols=190  Identities=9%  Similarity=0.042  Sum_probs=103.0

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCC---c--eeEEe---eCcE-EEEeeCC---CCceEEEEEcCcccceeccCCCCCC-C
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYP---V--RPVSS---IGSF-LLLRPIN---STILQLVLCNPFTRQFRYLPLLNVS-R  129 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~---~--~~~~~---~~g~-l~~~gg~---~~~~~~~v~np~t~~w~~lp~~~~~-~  129 (373)
                      ..+.++||.++.|..+|.+..+..   .  .+++.   .+.. |..+...   .....+.+|+..|++|+.+...+.. .
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~   93 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP   93 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence            467779999999999976543211   1  11111   1111 2222211   1234678999999999998643211 1


Q ss_pred             CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceee-ecCCCccccccceeccCCceEEEC
Q 046684          130 TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI-IGSMPVEFAVRLTVWTPNESVCTR  208 (373)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~~~~~~  208 (373)
                      .....+.++           +.+|-+....     .......+..||..+++|++ ++ +|...   .........+.++
T Consensus        94 ~~~~~v~~~-----------G~lyw~~~~~-----~~~~~~~IvsFDl~~E~f~~~i~-~P~~~---~~~~~~~~L~~~~  153 (230)
T TIGR01640        94 LKSRGVCIN-----------GVLYYLAYTL-----KTNPDYFIVSFDVSSERFKEFIP-LPCGN---SDSVDYLSLINYK  153 (230)
T ss_pred             ccCCeEEEC-----------CEEEEEEEEC-----CCCCcEEEEEEEcccceEeeeee-cCccc---cccccceEEEEEC
Confidence            111133343           7777776432     11112368889999999996 43 34210   1111233457788


Q ss_pred             CEEEEEEcC---CceEEEEEE-CCCCcEEecccCCC--C-C--CC--ceeEEEECCEEEEEEeecCCc-eEEEEeec
Q 046684          209 GMLYWITSA---RAYSVIGFD-IESNTWRELSAPMA--D-R--LE--FATLVSRNQKLTLIGGTCGGD-ACVWELSE  273 (373)
Q Consensus       209 g~ly~~gg~---~~~~i~~yd-~~~~~w~~~~~~~p--~-~--~~--~~~~~~~~g~l~~~gg~~~~~-~~i~~~~~  273 (373)
                      |+|.++...   ..-.|+..+ -..++|++. ...+  . .  ..  ....+..+|+|++........ +.+|++++
T Consensus       154 G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~-~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~  229 (230)
T TIGR01640       154 GKLAVLKQKKDTNNFDLWVLNDAGKQEWSKL-FTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE  229 (230)
T ss_pred             CEEEEEEecCCCCcEEEEEECCCCCCceeEE-EEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence            999988632   234677765 345679864 2222  1 1  11  123345578888876532122 66777653

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.54  E-value=0.015  Score=52.33  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             EeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccc
Q 046684           91 SSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES  170 (373)
Q Consensus        91 ~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~  170 (373)
                      +..+..|+.++.   .....+||+.|..-..+|.++.+.....+..++           ++||++...............
T Consensus        73 al~gskIv~~d~---~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG-----------~~LY~m~~~~~~~~~~~~~~~  138 (342)
T PF07893_consen   73 ALHGSKIVAVDQ---SGRTLVYDTDTRAVATGPRLHSPKRCPISVSVG-----------DKLYAMDRSPFPEPAGRPDFP  138 (342)
T ss_pred             EecCCeEEEEcC---CCCeEEEECCCCeEeccCCCCCCCcceEEEEeC-----------CeEEEeeccCccccccCccce
Confidence            335888888876   366999999999999999988776666555555           779999765311000000001


Q ss_pred             eEEEE--E--------CCCCceeeecCCCccccccceecc----CCceEEECC-EEEEEEcCCceEEEEEECCCCcEEec
Q 046684          171 MVEMY--D--------SRHDAWQIIGSMPVEFAVRLTVWT----PNESVCTRG-MLYWITSARAYSVIGFDIESNTWREL  235 (373)
Q Consensus       171 ~~~~y--d--------~~~~~W~~~~~~p~~~~~~~~~~~----~~~~~~~~g-~ly~~gg~~~~~i~~yd~~~~~w~~~  235 (373)
                      .+|++  +        ....+|+.+++.|-.    .....    -.+-++++| .|++-........++||+++.+|+..
T Consensus       139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~----~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  139 CFEALVYRPPPDDPSPEESWSWRSLPPPPFV----RDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH  214 (342)
T ss_pred             eEEEeccccccccccCCCcceEEcCCCCCcc----ccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence            45554  3        223467887764421    11111    223345544 56553222124799999999999998


Q ss_pred             ccC
Q 046684          236 SAP  238 (373)
Q Consensus       236 ~~~  238 (373)
                       ..
T Consensus       215 -Gd  216 (342)
T PF07893_consen  215 -GD  216 (342)
T ss_pred             -cc
Confidence             44

>PLN02772 guanylate kinase

Probab=97.39  E-value=0.0014  Score=58.91  Aligned_cols=76  Identities=17%  Similarity=0.160  Sum_probs=57.9

Q ss_pred             eccCCceEEECCEEEEEEcCC-----ceEEEEEECCCCcEEecc--cCCCCCCCceeEEEE-CCEEEEEEeecCCceEEE
Q 046684          198 VWTPNESVCTRGMLYWITSAR-----AYSVIGFDIESNTWRELS--APMADRLEFATLVSR-NQKLTLIGGTCGGDACVW  269 (373)
Q Consensus       198 ~~~~~~~~~~~g~ly~~gg~~-----~~~i~~yd~~~~~w~~~~--~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~  269 (373)
                      ++..++++.+++++|++||..     .+.+++||..+.+|....  .+.|.++.+++.+++ +++|+++.+....+=.+|
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w  103 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIW  103 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceE
Confidence            345577789999999998632     358999999999998652  456888888888888 689999985443333688


Q ss_pred             Eeec
Q 046684          270 ELSE  273 (373)
Q Consensus       270 ~~~~  273 (373)
                      -|+-
T Consensus       104 ~l~~  107 (398)
T PLN02772        104 FLEV  107 (398)
T ss_pred             EEEc
Confidence            7765

>PLN02772 guanylate kinase

Probab=97.32  E-value=0.0018  Score=58.33  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc-ccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684          128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT-YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC  206 (373)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~  206 (373)
                      ++...++..++           .|+|++||.+     +.. ....+++||..+++|......-    .++.++.++++++
T Consensus        24 ~~~~~tav~ig-----------dk~yv~GG~~-----d~~~~~~~v~i~D~~t~~W~~P~V~G----~~P~~r~GhSa~v   83 (398)
T PLN02772         24 PKNRETSVTIG-----------DKTYVIGGNH-----EGNTLSIGVQILDKITNNWVSPIVLG----TGPKPCKGYSAVV   83 (398)
T ss_pred             CCCcceeEEEC-----------CEEEEEcccC-----CCccccceEEEEECCCCcEecccccC----CCCCCCCcceEEE
Confidence            55667777787           9999999987     433 5679999999999998765442    1155677777777


Q ss_pred             E-CCEEEEEEcC--CceEEEEEECCC
Q 046684          207 T-RGMLYWITSA--RAYSVIGFDIES  229 (373)
Q Consensus       207 ~-~g~ly~~gg~--~~~~i~~yd~~~  229 (373)
                      + ++.|+++...  ...+++-+.+.|
T Consensus        84 ~~~~rilv~~~~~~~~~~~w~l~~~t  109 (398)
T PLN02772         84 LNKDRILVIKKGSAPDDSIWFLEVDT  109 (398)
T ss_pred             ECCceEEEEeCCCCCccceEEEEcCC
Confidence            7 5899999732  245566665554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.29  E-value=0.11  Score=45.64  Aligned_cols=226  Identities=12%  Similarity=0.061  Sum_probs=103.3

Q ss_pred             eeEEEEeCCCCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCCCCCeEEEEEcC
Q 046684           63 LCCYVHNPVSDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~  140 (373)
                      ..+..+|+.+++.... .....++ ......-+..+|+.++.  ...+.+||..+++... ++....   ...++ . .+
T Consensus        11 ~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~---~~~~~-~-~~   82 (300)
T TIGR03866        11 NTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASD--SDTIQVIDLATGEVIGTLPSGPD---PELFA-L-HP   82 (300)
T ss_pred             CEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECC--CCeEEEEECCCCcEEEeccCCCC---ccEEE-E-CC
Confidence            4666788876643222 2111122 12222224456666543  4678999999887644 332111   11222 1 11


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCc
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARA  219 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~  219 (373)
                      .+       .++|+.++.+          ..+.+||..+.+  .+..++..       .....+++ -+|.+++++....
T Consensus        83 ~g-------~~l~~~~~~~----------~~l~~~d~~~~~--~~~~~~~~-------~~~~~~~~~~dg~~l~~~~~~~  136 (300)
T TIGR03866        83 NG-------KILYIANEDD----------NLVTVIDIETRK--VLAEIPVG-------VEPEGMAVSPDGKIVVNTSETT  136 (300)
T ss_pred             CC-------CEEEEEcCCC----------CeEEEEECCCCe--EEeEeeCC-------CCcceEEECCCCCEEEEEecCC
Confidence            10       4566654322          368889987753  22222100       00112222 3566666654433


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKA  299 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~  299 (373)
                      ..+..||..+.+-... .+.. .........-+|+.+++++..+..+.+|+++.    .  +.+..+............ 
T Consensus       137 ~~~~~~d~~~~~~~~~-~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~----~--~~~~~~~~~~~~~~~~~~-  207 (300)
T TIGR03866       137 NMAHFIDTKTYEIVDN-VLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVAT----R--KVIKKITFEIPGVHPEAV-  207 (300)
T ss_pred             CeEEEEeCCCCeEEEE-EEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCc----c--eeeeeeeecccccccccC-
Confidence            4566788876544322 1111 11111222335665555544444578888854    2  233332211000000000 


Q ss_pred             CCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          300 SWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ..........+..+|+..+..+.+.+||.+  +.
T Consensus       208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~--~~  239 (300)
T TIGR03866       208 QPVGIKLTKDGKTAFVALGPANRVAVVDAK--TY  239 (300)
T ss_pred             CccceEECCCCCEEEEEcCCCCeEEEEECC--CC
Confidence            000122223355667765555679999998  55

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF13854 Kelch_5: Kelch motif

Probab=97.19  E-value=0.00097  Score=39.55  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCC
Q 046684          125 LNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRH  179 (373)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~  179 (373)
                      +|.+|..+++++++           ++||++||...   .......++++||..+
T Consensus         1 ~P~~R~~hs~~~~~-----------~~iyi~GG~~~---~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVG-----------NNIYIFGGYSG---NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEEC-----------CEEEEEcCccC---CCCCEECcEEEEECCC
Confidence            36778888888887           99999999871   1355678899999865

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.17  E-value=0.17  Score=46.45  Aligned_cols=198  Identities=14%  Similarity=0.110  Sum_probs=107.8

Q ss_pred             eEEeeCcEEEEeeCCCCceEEEEEcCcccc--eec-cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC
Q 046684           89 PVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRY-LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG  165 (373)
Q Consensus        89 ~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~-lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~  165 (373)
                      .....++.+|+.+.   ...++.+|+.|++  |+. ++..    ...+.++.+           .++|+.. .+      
T Consensus        60 ~p~v~~~~v~v~~~---~g~v~a~d~~tG~~~W~~~~~~~----~~~~p~v~~-----------~~v~v~~-~~------  114 (377)
T TIGR03300        60 QPAVAGGKVYAADA---DGTVVALDAETGKRLWRVDLDER----LSGGVGADG-----------GLVFVGT-EK------  114 (377)
T ss_pred             ceEEECCEEEEECC---CCeEEEEEccCCcEeeeecCCCC----cccceEEcC-----------CEEEEEc-CC------
Confidence            34566899998776   4679999999886  643 3321    111222222           6777643 22      


Q ss_pred             CcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCC
Q 046684          166 ATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMAD  241 (373)
Q Consensus       166 ~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~  241 (373)
                          ..++.+|..+++  |+....-+          .....+..++.+|+..  ....+.++|++++  .|+.- ...+.
T Consensus       115 ----g~l~ald~~tG~~~W~~~~~~~----------~~~~p~v~~~~v~v~~--~~g~l~a~d~~tG~~~W~~~-~~~~~  177 (377)
T TIGR03300       115 ----GEVIALDAEDGKELWRAKLSSE----------VLSPPLVANGLVVVRT--NDGRLTALDAATGERLWTYS-RVTPA  177 (377)
T ss_pred             ----CEEEEEECCCCcEeeeeccCce----------eecCCEEECCEEEEEC--CCCeEEEEEcCCCceeeEEc-cCCCc
Confidence                368999987765  87543221          1123355678888763  3577999999876  47654 22221


Q ss_pred             -C-CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh--hhhcCCCCCCCceEEEecCCEEEEEE
Q 046684          242 -R-LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG--MRLSGGKASWGGTRCAAGNGAICLYR  317 (373)
Q Consensus       242 -~-~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~  317 (373)
                       . ......+..++.+|+ +. .+..+..+++..  .+..|+.-...+....  .....     .....+..++.+|+..
T Consensus       178 ~~~~~~~sp~~~~~~v~~-~~-~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~-----~~~~p~~~~~~vy~~~  248 (377)
T TIGR03300       178 LTLRGSASPVIADGGVLV-GF-AGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVD-----VDGDPVVDGGQVYAVS  248 (377)
T ss_pred             eeecCCCCCEEECCEEEE-EC-CCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhc-----cCCccEEECCEEEEEE
Confidence             1 112233455665543 32 223344555544  3456764322221100  00000     0112234578888865


Q ss_pred             cCCccEEEEEccccCCcccEEEe
Q 046684          318 EVGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       318 ~~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      . .+.+.+||++  +++..|+.-
T Consensus       249 ~-~g~l~a~d~~--tG~~~W~~~  268 (377)
T TIGR03300       249 Y-QGRVAALDLR--SGRVLWKRD  268 (377)
T ss_pred             c-CCEEEEEECC--CCcEEEeec
Confidence            3 4579999999  887778753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.16  E-value=0.13  Score=44.08  Aligned_cols=198  Identities=14%  Similarity=0.085  Sum_probs=107.0

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|.+|+..-.  ...++.+|+.+++-..+....    ..++++....         +++|+.....            ..
T Consensus        11 ~g~l~~~D~~--~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~---------g~l~v~~~~~------------~~   63 (246)
T PF08450_consen   11 DGRLYWVDIP--GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD---------GRLYVADSGG------------IA   63 (246)
T ss_dssp             TTEEEEEETT--TTEEEEEETTTTEEEEEESSS----EEEEEEECTT---------SEEEEEETTC------------EE
T ss_pred             CCEEEEEEcC--CCEEEEEECCCCeEEEEecCC----CceEEEEccC---------CEEEEEEcCc------------eE
Confidence            6777877643  568999999998765432222    1223222111         7788876432            46


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC-----Cc--eEEEEEECCCCcEEecccCCCCCCCce
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA-----RA--YSVIGFDIESNTWRELSAPMADRLEFA  246 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~-----~~--~~i~~yd~~~~~w~~~~~~~p~~~~~~  246 (373)
                      ++|+.+++++.+...+..  .....+.+..++--+|.+|+-...     ..  ..++.+++. ++...+...+.   ...
T Consensus        64 ~~d~~~g~~~~~~~~~~~--~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pN  137 (246)
T PF08450_consen   64 VVDPDTGKVTVLADLPDG--GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPN  137 (246)
T ss_dssp             EEETTTTEEEEEEEEETT--CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEE
T ss_pred             EEecCCCcEEEEeeccCC--CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---ccc
Confidence            669999999877665311  000111111223336888887521     11  679999999 66655522211   122


Q ss_pred             eEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEe---echhh-hhhhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684          247 TLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEK---VPIEM-GMRLSGGKASWGGTRCAAGNGAICLYREVG  320 (373)
Q Consensus       247 ~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~---~p~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  320 (373)
                      +++.. ++ .||+... ....+..++++.  .+..+.....   ++... ..          .-.++..++.||+.....
T Consensus       138 Gi~~s~dg~~lyv~ds-~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~p----------DG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  138 GIAFSPDGKTLYVADS-FNGRIWRFDLDA--DGGELSNRRVFIDFPGGPGYP----------DGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             EEEEETTSSEEEEEET-TTTEEEEEEEET--TTCCEEEEEEEEE-SSSSCEE----------EEEEEBTTS-EEEEEETT
T ss_pred             ceEECCcchheeeccc-ccceeEEEeccc--cccceeeeeeEEEcCCCCcCC----------CcceEcCCCCEEEEEcCC
Confidence            44443 45 4666543 333355566654  3444554333   22221 00          133444578999987777


Q ss_pred             ccEEEEEccccCCcccEEEec
Q 046684          321 LGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       321 ~~~~~yd~~~~~~~~~W~~~~  341 (373)
                      +.|++||++  .+  .-..++
T Consensus       205 ~~I~~~~p~--G~--~~~~i~  221 (246)
T PF08450_consen  205 GRIVVFDPD--GK--LLREIE  221 (246)
T ss_dssp             TEEEEEETT--SC--EEEEEE
T ss_pred             CEEEEECCC--cc--EEEEEc
Confidence            799999998  55  444443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.12  E-value=0.16  Score=44.47  Aligned_cols=221  Identities=10%  Similarity=0.038  Sum_probs=100.5

Q ss_pred             eeEEEEeCCCCCccc-cCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHV-LSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..+..||..+.+... ++....+ ........++.+|+.++.  ...+.+||..+++-..  ..+.......+++..   
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~--~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~---  124 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSGPDP-ELFALHPNGKILYIANED--DNLVTVIDIETRKVLA--EIPVGVEPEGMAVSP---  124 (300)
T ss_pred             CeEEEEECCCCcEEEeccCCCCc-cEEEECCCCCEEEEEcCC--CCeEEEEECCCCeEEe--EeeCCCCcceEEECC---
Confidence            456678887765432 2221111 112122234556665542  3579999998865322  111111111222211   


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceE
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYS  221 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~  221 (373)
                             ++++++++...         ...+..||..+++-.......      .  ........-+|...++++.....
T Consensus       125 -------dg~~l~~~~~~---------~~~~~~~d~~~~~~~~~~~~~------~--~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       125 -------DGKIVVNTSET---------TNMAHFIDTKTYEIVDNVLVD------Q--RPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             -------CCCEEEEEecC---------CCeEEEEeCCCCeEEEEEEcC------C--CccEEEECCCCCEEEEEcCCCCE
Confidence                   15555555332         123556777654321111110      0  00111122355544444445678


Q ss_pred             EEEEECCCCcEE-ecccCCC----CCCCceeEE-EECCEE-EEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhh
Q 046684          222 VIGFDIESNTWR-ELSAPMA----DRLEFATLV-SRNQKL-TLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRL  294 (373)
Q Consensus       222 i~~yd~~~~~w~-~~~~~~p----~~~~~~~~~-~~~g~l-~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~  294 (373)
                      +..||+++.+.. .+....+    .......+. .-+|+. |+..+ ....+.+|+++      .++.+..+......  
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~------~~~~~~~~~~~~~~--  251 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAK------TYEVLDYLLVGQRV--  251 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECC------CCcEEEEEEeCCCc--
Confidence            999999876542 2211111    111111222 234544 44333 33347788764      35554443221110  


Q ss_pred             cCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          295 SGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                             ........+..||+..+..+.+.+||.+  +.
T Consensus       252 -------~~~~~~~~g~~l~~~~~~~~~i~v~d~~--~~  281 (300)
T TIGR03866       252 -------WQLAFTPDEKYLLTTNGVSNDVSVIDVA--AL  281 (300)
T ss_pred             -------ceEEECCCCCEEEEEcCCCCeEEEEECC--CC
Confidence                   0233333455666655667789999999  66

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.98  E-value=0.042  Score=46.74  Aligned_cols=184  Identities=14%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES  229 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~  229 (373)
                      +.+|.--|..     +   .+.+..||+.+++=.....+|..       ..+-..+.+++++|.+. ...+....||.++
T Consensus        56 g~LyESTG~y-----G---~S~l~~~d~~tg~~~~~~~l~~~-------~FgEGit~~~d~l~qLT-Wk~~~~f~yd~~t  119 (264)
T PF05096_consen   56 GTLYESTGLY-----G---QSSLRKVDLETGKVLQSVPLPPR-------YFGEGITILGDKLYQLT-WKEGTGFVYDPNT  119 (264)
T ss_dssp             TEEEEEECST-----T---EEEEEEEETTTSSEEEEEE-TTT---------EEEEEEETTEEEEEE-SSSSEEEEEETTT
T ss_pred             CEEEEeCCCC-----C---cEEEEEEECCCCcEEEEEECCcc-------ccceeEEEECCEEEEEE-ecCCeEEEEcccc
Confidence            6777765554     2   46789999999987666666532       23345678899999994 6678899999975


Q ss_pred             CcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec
Q 046684          230 NTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG  309 (373)
Q Consensus       230 ~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~  309 (373)
                        ++.+ ...+....+-+++.-+..|++..|..    .++.++.    ...+.+..+....-......     --..-..
T Consensus       120 --l~~~-~~~~y~~EGWGLt~dg~~Li~SDGS~----~L~~~dP----~~f~~~~~i~V~~~g~pv~~-----LNELE~i  183 (264)
T PF05096_consen  120 --LKKI-GTFPYPGEGWGLTSDGKRLIMSDGSS----RLYFLDP----ETFKEVRTIQVTDNGRPVSN-----LNELEYI  183 (264)
T ss_dssp             --TEEE-EEEE-SSS--EEEECSSCEEEE-SSS----EEEEE-T----TT-SEEEEEE-EETTEE--------EEEEEEE
T ss_pred             --ceEE-EEEecCCcceEEEcCCCEEEEECCcc----ceEEECC----cccceEEEEEEEECCEECCC-----cEeEEEE
Confidence              4444 33444457778887777888877644    4555554    45555555433211000000     0112234


Q ss_pred             CCEEEEEEcCCccEEEEEccccCCccc-EEEeccc----ccCCCCcccccceeEEEecccccc
Q 046684          310 NGAICLYREVGLGMIIWREDEDKRKWE-WVWVGGC----CLTGGKQVQNVPMRGVLLHPSLAC  367 (373)
Q Consensus       310 ~~~i~~~~~~~~~~~~yd~~~~~~~~~-W~~~~~~----~~~~~~~~~~~~~~~~~~~p~l~~  367 (373)
                      +|.||.---.++.|+.-||+  +++++ |..+..+    .....+......+.|+.|.|.-..
T Consensus       184 ~G~IyANVW~td~I~~Idp~--tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~  244 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPE--TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR  244 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETT--T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred             cCEEEEEeCCCCeEEEEeCC--CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence            88898877777889999999  98433 3333222    111111112346889999876443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.88  E-value=0.058  Score=48.65  Aligned_cols=130  Identities=11%  Similarity=0.025  Sum_probs=75.5

Q ss_pred             ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC---------ceEEEEee-----
Q 046684          207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG---------DACVWELS-----  272 (373)
Q Consensus       207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~---------~~~i~~~~-----  272 (373)
                      .+.+|..+..  ...+..||+++..-... ..+.........+.++|+||++......         .+++....     
T Consensus        75 ~gskIv~~d~--~~~t~vyDt~t~av~~~-P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~  151 (342)
T PF07893_consen   75 HGSKIVAVDQ--SGRTLVYDTDTRAVATG-PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD  151 (342)
T ss_pred             cCCeEEEEcC--CCCeEEEECCCCeEecc-CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence            4778888842  36699999999988866 3444444445566779999999865322         23333222     


Q ss_pred             -cCCCCCCeEEEEeechhhhhhhcCCCCC-CCceEEEecCCEEEEE-EcCCccEEEEEccccCCcccEEEecccccCC
Q 046684          273 -EGGDDDIWCLIEKVPIEMGMRLSGGKAS-WGGTRCAAGNGAICLY-REVGLGMIIWREDEDKRKWEWVWVGGCCLTG  347 (373)
Q Consensus       273 -~~~~~~~W~~v~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~-~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~  347 (373)
                       .....-.|..+...|   +......... ...++++ .|..||+- .+.....+.||.+  +.  +|+++....++-
T Consensus       152 ~~~~~~w~W~~LP~PP---f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~--~~--~W~~~GdW~LPF  221 (342)
T PF07893_consen  152 PSPEESWSWRSLPPPP---FVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTE--SH--EWRKHGDWMLPF  221 (342)
T ss_pred             ccCCCcceEEcCCCCC---ccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcC--Cc--ceeeccceecCc
Confidence             101223455543333   3321111000 1123333 57889884 3332358999999  99  999997765553

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.84  E-value=0.43  Score=44.79  Aligned_cols=233  Identities=10%  Similarity=-0.005  Sum_probs=109.6

Q ss_pred             CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ...++..|.....-..++....+-.....+.-+..|...........++++|+.+++.+.+...+.....  ...-.++ 
T Consensus       181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~--~~~SPDG-  257 (435)
T PRK05137        181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFA--PRFSPDG-  257 (435)
T ss_pred             ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccC--cEECCCC-
Confidence            3577777765443333322211111111222233344433223357899999999988777654432211  1111111 


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE-EEEEEc-CCc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITS-ARA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg-~~~  219 (373)
                              .+|++....+        ...+++++|..++.-+.+...+.        ........-+|+ +++... ...
T Consensus       258 --------~~la~~~~~~--------g~~~Iy~~d~~~~~~~~Lt~~~~--------~~~~~~~spDG~~i~f~s~~~g~  313 (435)
T PRK05137        258 --------RKVVMSLSQG--------GNTDIYTMDLRSGTTTRLTDSPA--------IDTSPSYSPDGSQIVFESDRSGS  313 (435)
T ss_pred             --------CEEEEEEecC--------CCceEEEEECCCCceEEccCCCC--------ccCceeEcCCCCEEEEEECCCCC
Confidence                    4454443221        13578899998887766654321        011111223444 444421 123


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKA  299 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~  299 (373)
                      ..|+.+|..+++.+.+ .......... ...-+|+..++.........+|.++.  ++.....+..-.  .         
T Consensus       314 ~~Iy~~d~~g~~~~~l-t~~~~~~~~~-~~SpdG~~ia~~~~~~~~~~i~~~d~--~~~~~~~lt~~~--~---------  378 (435)
T PRK05137        314 PQLYVMNADGSNPRRI-SFGGGRYSTP-VWSPRGDLIAFTKQGGGQFSIGVMKP--DGSGERILTSGF--L---------  378 (435)
T ss_pred             CeEEEEECCCCCeEEe-ecCCCcccCe-EECCCCCEEEEEEcCCCceEEEEEEC--CCCceEeccCCC--C---------
Confidence            5788999988877776 2221111111 12234544333333222234444443  224333332111  0         


Q ss_pred             CCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEec
Q 046684          300 SWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~  341 (373)
                       .........|..|++.....     ..++.+|++  .+  .-+.++
T Consensus       379 -~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~--g~--~~~~l~  420 (435)
T PRK05137        379 -VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT--GR--NEREVP  420 (435)
T ss_pred             -CCCCeECCCCCEEEEEEccCCCCCcceEEEEECC--CC--ceEEcc
Confidence             01244455566776654321     368999998  76  545443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.77  E-value=0.23  Score=42.16  Aligned_cols=227  Identities=11%  Similarity=0.033  Sum_probs=126.4

Q ss_pred             EEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCC-CCCCCCeEEEEEcCCCC
Q 046684           65 CYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN-VSRTNPAVGIVMEGPAQ  143 (373)
Q Consensus        65 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~-~~~~~~~~~~~~~~~~~  143 (373)
                      +-..||.+.+-.+.++..-.+....+.--+|-..+..+   ..-+..+||.|.+.++.|-.. ....+....+.+..   
T Consensus        85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~---~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~---  158 (353)
T COG4257          85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT---GLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPW---  158 (353)
T ss_pred             ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC---cceeEEecCcccceEEeecccccCCCcccceeeCCC---
Confidence            33357777777666665544444444444555666554   247889999998887765332 22223333333321   


Q ss_pred             CCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEE
Q 046684          144 HGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVI  223 (373)
Q Consensus       144 ~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~  223 (373)
                            +.++..|...     ..      -..|+.++.-+..+ .|++     ..-+ --++.-+|.+|+. ....+.|.
T Consensus       159 ------G~lWFt~q~G-----~y------GrLdPa~~~i~vfp-aPqG-----~gpy-Gi~atpdGsvwya-slagnaia  213 (353)
T COG4257         159 ------GNLWFTGQIG-----AY------GRLDPARNVISVFP-APQG-----GGPY-GICATPDGSVWYA-SLAGNAIA  213 (353)
T ss_pred             ------ccEEEeeccc-----cc------eecCcccCceeeec-cCCC-----CCCc-ceEECCCCcEEEE-eccccceE
Confidence                  7788776432     10      13334333322211 1211     0011 1234568999988 45567888


Q ss_pred             EEECCCCcEEecccCCCCCCCcee-EEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCC
Q 046684          224 GFDIESNTWRELSAPMADRLEFAT-LVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWG  302 (373)
Q Consensus       224 ~yd~~~~~w~~~~~~~p~~~~~~~-~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~  302 (373)
                      ..|+.+..=++++.|-+....... .+.-.|++.+..- ....+..+++..    ..|.. ..+|...-+          
T Consensus       214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~----~sW~e-ypLPgs~ar----------  277 (353)
T COG4257         214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSV----TSWIE-YPLPGSKAR----------  277 (353)
T ss_pred             EcccccCCcceecCCCcccccccccccCccCcEEEecc-CCceeeEeCccc----cccee-eeCCCCCCC----------
Confidence            999988866666333332222222 2334577776632 222245555544    77876 345543221          


Q ss_pred             ceE-EEecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684          303 GTR-CAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       303 ~~~-~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      +.. .+...|.+++-.-..+.+..||++  +.  +.++++.
T Consensus       278 pys~rVD~~grVW~sea~agai~rfdpe--ta--~ftv~p~  314 (353)
T COG4257         278 PYSMRVDRHGRVWLSEADAGAIGRFDPE--TA--RFTVLPI  314 (353)
T ss_pred             cceeeeccCCcEEeeccccCceeecCcc--cc--eEEEecC
Confidence            233 344578999988777889999999  88  8887764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.66  E-value=0.6  Score=44.01  Aligned_cols=223  Identities=8%  Similarity=0.016  Sum_probs=108.3

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPA  142 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~  142 (373)
                      ..++..|.....-..+.....+......+.-+..|+..........++++|..+++-+.+...+....  ....  .+.+
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~--~~~w--SPDG  273 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING--APRF--SPDG  273 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC--CeeE--CCCC
Confidence            56666676554433332211111111222223344443322335689999999988766654432211  1111  1111


Q ss_pred             CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCE-EEEEEc-CCc
Q 046684          143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGM-LYWITS-ARA  219 (373)
Q Consensus       143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~-ly~~gg-~~~  219 (373)
                             .+|++....+        ....++++|..+++.+.+.....         .....+ .-+|+ +++... ...
T Consensus       274 -------~~La~~~~~~--------g~~~Iy~~dl~tg~~~~lt~~~~---------~~~~p~wSpDG~~I~f~s~~~g~  329 (448)
T PRK04792        274 -------KKLALVLSKD--------GQPEIYVVDIATKALTRITRHRA---------IDTEPSWHPDGKSLIFTSERGGK  329 (448)
T ss_pred             -------CEEEEEEeCC--------CCeEEEEEECCCCCeEECccCCC---------CccceEECCCCCEEEEEECCCCC
Confidence                   4565544222        13578999999988877654310         011112 22443 544432 124


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKA  299 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~  299 (373)
                      ..++.+|+++++++.+ .. ...........-+|+.+++.........+|.++.  ++...+.+..-....         
T Consensus       330 ~~Iy~~dl~~g~~~~L-t~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl--~~g~~~~lt~~~~d~---------  396 (448)
T PRK04792        330 PQIYRVNLASGKVSRL-TF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDL--ETGAMQVLTSTRLDE---------  396 (448)
T ss_pred             ceEEEEECCCCCEEEE-ec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEEC--CCCCeEEccCCCCCC---------
Confidence            5799999999988877 21 1111111122335544444434333356777765  456555543221110         


Q ss_pred             CCCceEEEecCCEEEEEEcCC--ccEEEEEcc
Q 046684          300 SWGGTRCAAGNGAICLYREVG--LGMIIWRED  329 (373)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~~--~~~~~yd~~  329 (373)
                         .......|..|++.....  ..++++|.+
T Consensus       397 ---~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        397 ---SPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             ---CceECCCCCEEEEEEecCCceEEEEEECC
Confidence               234445566666654332  347777775

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=96.58  E-value=0.4  Score=41.00  Aligned_cols=174  Identities=14%  Similarity=0.136  Sum_probs=102.5

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECC-----CCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSR-----HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIG  224 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~-----~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~  224 (373)
                      .++|++.+..     +.    .+..|...     .+.....-.+|       ....+...++.||.+|.-. .....|..
T Consensus        31 ~~iy~~~~~~-----~~----~v~ey~~~~~f~~~~~~~~~~~Lp-------~~~~GtG~vVYngslYY~~-~~s~~Ivk   93 (250)
T PF02191_consen   31 EKIYVTSGFS-----GN----TVYEYRNYEDFLRNGRSSRTYKLP-------YPWQGTGHVVYNGSLYYNK-YNSRNIVK   93 (250)
T ss_pred             CCEEEECccC-----CC----EEEEEcCHhHHhhcCCCceEEEEe-------ceeccCCeEEECCcEEEEe-cCCceEEE
Confidence            8899998765     22    55555432     23333333332       2344556688999999984 45789999


Q ss_pred             EECCCCcEEecccCCCCCC------------CceeEEEECCEEEEEEeecCCc--eEEEEeec--CCCCCCeEEEEeech
Q 046684          225 FDIESNTWRELSAPMADRL------------EFATLVSRNQKLTLIGGTCGGD--ACVWELSE--GGDDDIWCLIEKVPI  288 (373)
Q Consensus       225 yd~~~~~w~~~~~~~p~~~------------~~~~~~~~~g~l~~~gg~~~~~--~~i~~~~~--~~~~~~W~~v~~~p~  288 (373)
                      ||+.++.-... ..+|.+.            ....+++-...|.++-...+..  +.+=+++.  .....+|..  ..+.
T Consensus        94 ydL~t~~v~~~-~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k  170 (250)
T PF02191_consen   94 YDLTTRSVVAR-RELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPK  170 (250)
T ss_pred             EECcCCcEEEE-EECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCc
Confidence            99999876622 2333322            1234566567788887655432  66666665  112233442  2333


Q ss_pred             hhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----ccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684          289 EMGMRLSGGKASWGGTRCAAGNGAICLYREVG----LGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS  364 (373)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~  364 (373)
                      ..            ...+++.=|.||++....    .-..+||+.  ++  +=. ...+++...-.    ....+.|.|+
T Consensus       171 ~~------------~~naFmvCGvLY~~~s~~~~~~~I~yafDt~--t~--~~~-~~~i~f~~~~~----~~~~l~YNP~  229 (250)
T PF02191_consen  171 RS------------AGNAFMVCGVLYATDSYDTRDTEIFYAFDTY--TG--KEE-DVSIPFPNPYG----NISMLSYNPR  229 (250)
T ss_pred             hh------------hcceeeEeeEEEEEEECCCCCcEEEEEEECC--CC--cee-ceeeeeccccC----ceEeeeECCC
Confidence            22            245666678899987543    346789999  87  533 34455555433    4556788886

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.57  E-value=0.23  Score=42.13  Aligned_cols=139  Identities=12%  Similarity=0.161  Sum_probs=81.2

Q ss_pred             eEEEEECCCCc--eeeecCCCccccccceeccCCc--eEEECCEEEEEEcCCceEEEEEECCCCc--EEecccCCCCCCC
Q 046684          171 MVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNE--SVCTRGMLYWITSARAYSVIGFDIESNT--WRELSAPMADRLE  244 (373)
Q Consensus       171 ~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~--~~~~~g~ly~~gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~  244 (373)
                      .+..+|..+++  |+.-..-+         .....  .+..++.+|+..  ....+.++|..+++  |+.- .  +....
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~---------~~~~~~~~~~~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~-~--~~~~~   69 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPG---------IGGPVATAVPDGGRVYVAS--GDGNLYALDAKTGKVLWRFD-L--PGPIS   69 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSS---------CSSEEETEEEETTEEEEEE--TTSEEEEEETTTSEEEEEEE-C--SSCGG
T ss_pred             EEEEEECCCCCEEEEEECCCC---------CCCccceEEEeCCEEEEEc--CCCEEEEEECCCCCEEEEee-c--ccccc
Confidence            56778887765  87633110         11111  244788899883  56889999998774  6654 2  22222


Q ss_pred             ceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEE-EEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccE
Q 046684          245 FATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCL-IEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGM  323 (373)
Q Consensus       245 ~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~-v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  323 (373)
                      . .....++.+|+....  ..+..++..+  .+..|+. ....+.....         ........++.+++... .+.+
T Consensus        70 ~-~~~~~~~~v~v~~~~--~~l~~~d~~t--G~~~W~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~g~l  134 (238)
T PF13360_consen   70 G-APVVDGGRVYVGTSD--GSLYALDAKT--GKVLWSIYLTSSPPAGVR---------SSSSPAVDGDRLYVGTS-SGKL  134 (238)
T ss_dssp             S-GEEEETTEEEEEETT--SEEEEEETTT--SCEEEEEEE-SSCTCSTB-----------SEEEEETTEEEEEET-CSEE
T ss_pred             c-eeeecccccccccce--eeeEecccCC--cceeeeeccccccccccc---------cccCceEecCEEEEEec-cCcE
Confidence            2 247778898887622  2344555444  5556884 4332222111         12444445777777553 5589


Q ss_pred             EEEEccccCCcccEEEe
Q 046684          324 IIWREDEDKRKWEWVWV  340 (373)
Q Consensus       324 ~~yd~~~~~~~~~W~~~  340 (373)
                      +++|++  +++..|+.-
T Consensus       135 ~~~d~~--tG~~~w~~~  149 (238)
T PF13360_consen  135 VALDPK--TGKLLWKYP  149 (238)
T ss_dssp             EEEETT--TTEEEEEEE
T ss_pred             EEEecC--CCcEEEEee
Confidence            999999  997788864

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=96.53  E-value=0.6  Score=42.33  Aligned_cols=266  Identities=14%  Similarity=0.110  Sum_probs=132.3

Q ss_pred             eeEEEEeCCCCCccccCC-CCCCCCc-eeEEeeCcEEEEeeCCC-CceEE--EEEcCcccceeccCCCCCCCCCCeEEEE
Q 046684           63 LCCYVHNPVSDKWHVLSL-DFLPYPV-RPVSSIGSFLLLRPINS-TILQL--VLCNPFTRQFRYLPLLNVSRTNPAVGIV  137 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~-~~~~~~~-~~~~~~~g~l~~~gg~~-~~~~~--~v~np~t~~w~~lp~~~~~~~~~~~~~~  137 (373)
                      -..+.||..+.++..+.. ....... ..+...+..||+..... ....+  +..++.+++.+.+...+.....++...+
T Consensus        15 I~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~   94 (345)
T PF10282_consen   15 IYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV   94 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE
T ss_pred             EEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE
Confidence            455557778888876632 1222222 23445788899987642 33444  4455555677776655432222232223


Q ss_pred             EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCC-ceeeecCC-------CccccccceeccCCceEEE-C
Q 046684          138 MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHD-AWQIIGSM-------PVEFAVRLTVWTPNESVCT-R  208 (373)
Q Consensus       138 ~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~-------p~~~~~~~~~~~~~~~~~~-~  208 (373)
                      . +.+       ..+|+.. +.         ...+.+|+...+ +=......       |..  ........|.+.+- +
T Consensus        95 ~-~~g-------~~l~van-y~---------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~--~rq~~~h~H~v~~~pd  154 (345)
T PF10282_consen   95 D-PDG-------RFLYVAN-YG---------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP--DRQEGPHPHQVVFSPD  154 (345)
T ss_dssp             C-TTS-------SEEEEEE-TT---------TTEEEEEEECTTSEEEEEEEEEESEEEESST--TTTSSTCEEEEEE-TT
T ss_pred             e-cCC-------CEEEEEE-cc---------CCeEEEEEccCCcccceeeeecccCCCCCcc--cccccccceeEEECCC
Confidence            2 111       4566653 22         235677776653 22111100       100  00111122333333 3


Q ss_pred             C-EEEEEEcCCceEEEEEECCCCc--EEecc-cCCCCCCCceeEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEE
Q 046684          209 G-MLYWITSARAYSVIGFDIESNT--WRELS-APMADRLEFATLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCL  282 (373)
Q Consensus       209 g-~ly~~gg~~~~~i~~yd~~~~~--w~~~~-~~~p~~~~~~~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~  282 (373)
                      | .+|+. ......|..|+...+.  ..... ...|....-.+++.. +| .+|++. .....+.+++++.  .+..++.
T Consensus       155 g~~v~v~-dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~s~~v~v~~~~~--~~g~~~~  230 (345)
T PF10282_consen  155 GRFVYVP-DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-ELSNTVSVFDYDP--SDGSLTE  230 (345)
T ss_dssp             SSEEEEE-ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEET--TTTEEEE
T ss_pred             CCEEEEE-ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-CCCCcEEEEeecc--cCCceeE
Confidence            4 46655 3446778888887665  54421 122332222234433 44 566665 3445588999884  4567777


Q ss_pred             EEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEE
Q 046684          283 IEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVL  360 (373)
Q Consensus       283 v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  360 (373)
                      +..++..... ..+.   ..+..+..  .+..||+.+...+.|.+|+++.+++  +-+.+...+..+..      ...|.
T Consensus       231 ~~~~~~~~~~-~~~~---~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g--~l~~~~~~~~~G~~------Pr~~~  298 (345)
T PF10282_consen  231 IQTISTLPEG-FTGE---NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG--TLTLVQTVPTGGKF------PRHFA  298 (345)
T ss_dssp             EEEEESCETT-SCSS---SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT--TEEEEEEEEESSSS------EEEEE
T ss_pred             EEEeeecccc-cccc---CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC--ceEEEEEEeCCCCC------ccEEE
Confidence            7664422110 0000   01333333  3678999888888899999853367  66666665543332      34566


Q ss_pred             eccc
Q 046684          361 LHPS  364 (373)
Q Consensus       361 ~~p~  364 (373)
                      +.|.
T Consensus       299 ~s~~  302 (345)
T PF10282_consen  299 FSPD  302 (345)
T ss_dssp             E-TT
T ss_pred             EeCC
Confidence            6554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.50  E-value=0.33  Score=44.24  Aligned_cols=243  Identities=12%  Similarity=0.042  Sum_probs=115.5

Q ss_pred             CCCceEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEE-eeCcEEEEeeCCCCceEEEEEcCcccce-eccCCC
Q 046684           48 RRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVS-SIGSFLLLRPINSTILQLVLCNPFTRQF-RYLPLL  125 (373)
Q Consensus        48 ~~~~~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~g~l~~~gg~~~~~~~~v~np~t~~w-~~lp~~  125 (373)
                      +.+|.=+.+..+   ..+..|+..+..-.+. .....+...++. -.+|.++..|+.  ...+-+||..++.- +.+-..
T Consensus        36 p~~P~d~aVt~S---~rvqly~~~~~~~~k~-~srFk~~v~s~~fR~DG~LlaaGD~--sG~V~vfD~k~r~iLR~~~ah  109 (487)
T KOG0310|consen   36 PKHPYDFAVTSS---VRVQLYSSVTRSVRKT-FSRFKDVVYSVDFRSDGRLLAAGDE--SGHVKVFDMKSRVILRQLYAH  109 (487)
T ss_pred             CCCCCceEEecc---cEEEEEecchhhhhhh-HHhhccceeEEEeecCCeEEEccCC--cCcEEEeccccHHHHHHHhhc
Confidence            445544443332   4556687766543321 111122222333 336777777764  56788999555432 222222


Q ss_pred             CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE
Q 046684          126 NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV  205 (373)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~  205 (373)
                      ..+.....+...+           +++++.|+.+          ..+..+|..+.. . ...+..    ...........
T Consensus       110 ~apv~~~~f~~~d-----------~t~l~s~sDd----------~v~k~~d~s~a~-v-~~~l~~----htDYVR~g~~~  162 (487)
T KOG0310|consen  110 QAPVHVTKFSPQD-----------NTMLVSGSDD----------KVVKYWDLSTAY-V-QAELSG----HTDYVRCGDIS  162 (487)
T ss_pred             cCceeEEEecccC-----------CeEEEecCCC----------ceEEEEEcCCcE-E-EEEecC----CcceeEeeccc
Confidence            2221111111122           7788777544          344555555544 1 111100    01111111223


Q ss_pred             EECCEEEEEEcCCceEEEEEECCCC-cEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          206 CTRGMLYWITSARAYSVIGFDIESN-TWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       206 ~~~g~ly~~gg~~~~~i~~yd~~~~-~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      -.++++.+-| .+.+.|--||..+. .|..- .....+.. .-+..-.|.+++..|  ++.+.||++-.    .     .
T Consensus       163 ~~~~hivvtG-sYDg~vrl~DtR~~~~~v~e-lnhg~pVe-~vl~lpsgs~iasAg--Gn~vkVWDl~~----G-----~  228 (487)
T KOG0310|consen  163 PANDHIVVTG-SYDGKVRLWDTRSLTSRVVE-LNHGCPVE-SVLALPSGSLIASAG--GNSVKVWDLTT----G-----G  228 (487)
T ss_pred             cCCCeEEEec-CCCceEEEEEeccCCceeEE-ecCCCcee-eEEEcCCCCEEEEcC--CCeEEEEEecC----C-----c
Confidence            3567788774 56788999999887 44322 22222222 122233445555433  23489999964    1     1


Q ss_pred             eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCC
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGG  348 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~  348 (373)
                      .+......+ .   +.. ..-+...++.=++.++-++.+-+||..      .|+.+.+.-++++
T Consensus       229 qll~~~~~H-~---KtV-TcL~l~s~~~rLlS~sLD~~VKVfd~t------~~Kvv~s~~~~~p  281 (487)
T KOG0310|consen  229 QLLTSMFNH-N---KTV-TCLRLASDSTRLLSGSLDRHVKVFDTT------NYKVVHSWKYPGP  281 (487)
T ss_pred             eehhhhhcc-c---ceE-EEEEeecCCceEeecccccceEEEEcc------ceEEEEeeecccc
Confidence            111111100 0   000 122222344555667777889999977      6777766655554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.48  E-value=0.13  Score=43.91  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             ECCEEEEEEcCC-ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          207 TRGMLYWITSAR-AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       207 ~~g~ly~~gg~~-~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      .+|.+|--.|.. ...+..+|+++++-... .++|....+-+++.++++||.+.-..+ ..-+|+.      +..+++.+
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~~~FgEGit~~~d~l~qLTWk~~-~~f~yd~------~tl~~~~~  125 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPPRYFGEGITILGDKLYQLTWKEG-TGFVYDP------NTLKKIGT  125 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TTT--EEEEEEETTEEEEEESSSS-EEEEEET------TTTEEEEE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCccccceeEEEECCEEEEEEecCC-eEEEEcc------ccceEEEE
Confidence            568888877644 57899999999988766 678887788899999999999975443 2345544      56788887


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .+.+.  +         +.+.+..++.+++.+| +..+...||+
T Consensus       126 ~~y~~--E---------GWGLt~dg~~Li~SDG-S~~L~~~dP~  157 (264)
T PF05096_consen  126 FPYPG--E---------GWGLTSDGKRLIMSDG-SSRLYFLDPE  157 (264)
T ss_dssp             EE-SS--S-----------EEEECSSCEEEE-S-SSEEEEE-TT
T ss_pred             EecCC--c---------ceEEEcCCCEEEEECC-ccceEEECCc
Confidence            76642  1         5788877888777665 5589999998

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PTZ00421 coronin; Provisional

Probab=96.47  E-value=0.84  Score=43.45  Aligned_cols=138  Identities=9%  Similarity=0.069  Sum_probs=65.2

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeec---CCceEEEEeecCCCCCCeEEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTC---GGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~---~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      +|.+.+.+ ...+.|..||+.+++-... ..... ......+...++..++..|..   +..+.+|++..  ........
T Consensus       179 dG~lLatg-s~Dg~IrIwD~rsg~~v~t-l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~--~~~p~~~~  254 (493)
T PTZ00421        179 DGSLLCTT-SKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK--MASPYSTV  254 (493)
T ss_pred             CCCEEEEe-cCCCEEEEEECCCCcEEEE-EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC--CCCceeEe
Confidence            56665553 4567899999987653221 11111 111111112233334433322   23489999865  11111111


Q ss_pred             EeechhhhhhhcCCCCCCCceEEEecC-CEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEec
Q 046684          284 EKVPIEMGMRLSGGKASWGGTRCAAGN-GAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLH  362 (373)
Q Consensus       284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  362 (373)
                       .+.....          ........+ +.+++.+...+.|.+||+.  ++  +....-  ....     .....|++|.
T Consensus       255 -~~d~~~~----------~~~~~~d~d~~~L~lggkgDg~Iriwdl~--~~--~~~~~~--~~~s-----~~~~~g~~~~  312 (493)
T PTZ00421        255 -DLDQSSA----------LFIPFFDEDTNLLYIGSKGEGNIRCFELM--NE--RLTFCS--SYSS-----VEPHKGLCMM  312 (493)
T ss_pred             -ccCCCCc----------eEEEEEcCCCCEEEEEEeCCCeEEEEEee--CC--ceEEEe--eccC-----CCCCcceEec
Confidence             1111000          011222233 4455544346789999999  87  543321  1111     2234578888


Q ss_pred             ccccceeee
Q 046684          363 PSLACACIL  371 (373)
Q Consensus       363 p~l~~~~~~  371 (373)
                      |...+.|.-
T Consensus       313 pk~~~dv~~  321 (493)
T PTZ00421        313 PKWSLDTRK  321 (493)
T ss_pred             ccccccccc
Confidence            887776643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.45  E-value=0.63  Score=41.79  Aligned_cols=120  Identities=13%  Similarity=0.095  Sum_probs=68.4

Q ss_pred             EEEEEEcCCceEEEEEECC--CCcEEecc--cCCCC----CCCceeEEE-ECCE-EEEEEeecCCceEEEEeecCCCCCC
Q 046684          210 MLYWITSARAYSVIGFDIE--SNTWRELS--APMAD----RLEFATLVS-RNQK-LTLIGGTCGGDACVWELSEGGDDDI  279 (373)
Q Consensus       210 ~ly~~gg~~~~~i~~yd~~--~~~w~~~~--~~~p~----~~~~~~~~~-~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~  279 (373)
                      .+|+. ....+.+..||..  +++.+.+.  ...|.    .+....+.. -+|+ ||+. ......+.+|+++.  ++..
T Consensus       188 ~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~~~I~v~~i~~--~~~~  263 (330)
T PRK11028        188 YAYCV-NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTASLISVFSVSE--DGSV  263 (330)
T ss_pred             EEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCCCeEEEEEEeC--CCCe
Confidence            56666 3446788888876  34543321  11222    121112222 2454 5554 33344588999976  5567


Q ss_pred             eEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccc
Q 046684          280 WCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCC  344 (373)
Q Consensus       280 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~  344 (373)
                      ++.+...+.....         +.+.+...|..||+.+...+.+.+|+.+.+++  .++.+...+
T Consensus       264 ~~~~~~~~~~~~p---------~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g--~l~~~~~~~  317 (330)
T PRK11028        264 LSFEGHQPTETQP---------RGFNIDHSGKYLIAAGQKSHHISVYEIDGETG--LLTELGRYA  317 (330)
T ss_pred             EEEeEEEeccccC---------CceEECCCCCEEEEEEccCCcEEEEEEcCCCC--cEEEccccc
Confidence            7777776644211         13444455778888887677899997753377  677665544

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.43  E-value=0.069  Score=48.43  Aligned_cols=176  Identities=13%  Similarity=0.124  Sum_probs=97.3

Q ss_pred             cCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceee-ecCCCcc
Q 046684          113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI-IGSMPVE  191 (373)
Q Consensus       113 np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~  191 (373)
                      +|.+.-|++....+......++..+.....+-     +.+.+.++            ..+.+|++.+..=++ +..+   
T Consensus         8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P-----~d~aVt~S------------~rvqly~~~~~~~~k~~srF---   67 (487)
T KOG0310|consen    8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKHP-----YDFAVTSS------------VRVQLYSSVTRSVRKTFSRF---   67 (487)
T ss_pred             CccchhhhhhcccccccccCcceeEecCCCCC-----CceEEecc------------cEEEEEecchhhhhhhHHhh---
Confidence            46666787765444443333444444322222     44555442            458999988755332 2222   


Q ss_pred             ccccceeccCCc-eEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc-eeEEEECCEEEEEEeecCCceEEE
Q 046684          192 FAVRLTVWTPNE-SVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF-ATLVSRNQKLTLIGGTCGGDACVW  269 (373)
Q Consensus       192 ~~~~~~~~~~~~-~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~~~g~l~~~gg~~~~~~~i~  269 (373)
                            .....+ ..-.+|+|...| ...+.+-.||..+..--.. ..-..+... ......++.+++.++ ++.-..+|
T Consensus        68 ------k~~v~s~~fR~DG~LlaaG-D~sG~V~vfD~k~r~iLR~-~~ah~apv~~~~f~~~d~t~l~s~s-Dd~v~k~~  138 (487)
T KOG0310|consen   68 ------KDVVYSVDFRSDGRLLAAG-DESGHVKVFDMKSRVILRQ-LYAHQAPVHVTKFSPQDNTMLVSGS-DDKVVKYW  138 (487)
T ss_pred             ------ccceeEEEeecCCeEEEcc-CCcCcEEEeccccHHHHHH-HhhccCceeEEEecccCCeEEEecC-CCceEEEE
Confidence                  111112 233479999994 5678899999655221111 011111111 122234566666654 44446899


Q ss_pred             EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          270 ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       270 ~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ++++    .. . ...+..-.        .+.++..+...++.|++.|++++.|-.||.+  +.
T Consensus       139 d~s~----a~-v-~~~l~~ht--------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR--~~  186 (487)
T KOG0310|consen  139 DLST----AY-V-QAELSGHT--------DYVRCGDISPANDHIVVTGSYDGKVRLWDTR--SL  186 (487)
T ss_pred             EcCC----cE-E-EEEecCCc--------ceeEeeccccCCCeEEEecCCCceEEEEEec--cC
Confidence            9976    22 2 22333211        2234566677789999999999999999999  55

>smart00284 OLF Olfactomedin-like domains

Probab=96.42  E-value=0.5  Score=40.26  Aligned_cols=176  Identities=11%  Similarity=0.067  Sum_probs=98.8

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEEC----CCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDS----RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGF  225 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~----~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~y  225 (373)
                      .++|++.+..       .....+..|..    ..+.+...-.+|       ....+...++.||.+|.-. .....|..|
T Consensus        35 ~~~wv~~~~~-------~~~~~v~ey~~~~~f~~~~~~~~~~Lp-------~~~~GtG~VVYngslYY~~-~~s~~iiKy   99 (255)
T smart00284       35 SLYWYMPLNT-------RVLRSVREYSSMSDFQMGKNPTDHPLP-------HAGQGTGVVVYNGSLYFNK-FNSHDICRF   99 (255)
T ss_pred             ceEEEEcccc-------CCCcEEEEecCHHHHhccCCceEEECC-------CccccccEEEECceEEEEe-cCCccEEEE
Confidence            6788775431       11234555543    234444333443       2345566799999999974 446789999


Q ss_pred             ECCCCcEEecccCCCCC------------CCceeEEEECCEEEEEEeecCC--ceEEEEeecC--CCCCCeEEEEeechh
Q 046684          226 DIESNTWRELSAPMADR------------LEFATLVSRNQKLTLIGGTCGG--DACVWELSEG--GDDDIWCLIEKVPIE  289 (373)
Q Consensus       226 d~~~~~w~~~~~~~p~~------------~~~~~~~~~~g~l~~~gg~~~~--~~~i~~~~~~--~~~~~W~~v~~~p~~  289 (373)
                      |+.+++-... ..+|.+            .....+++-...|.++-...+.  .+.+=+++..  .....|..  ..+..
T Consensus       100 dL~t~~v~~~-~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~  176 (255)
T smart00284      100 DLTTETYQKE-PLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKR  176 (255)
T ss_pred             ECCCCcEEEE-EecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcc
Confidence            9999987543 233321            1223466666778888655433  3666677650  11122333  12222


Q ss_pred             hhhhhcCCCCCCCceEEEecCCEEEEEEc----CCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684          290 MGMRLSGGKASWGGTRCAAGNGAICLYRE----VGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS  364 (373)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~  364 (373)
                      .            ...+++.=|.||++..    .+.-..+||..  ++  + ..-+.+|+..+-.    ....+.|.|+
T Consensus       177 s------------a~naFmvCGvLY~~~s~~~~~~~I~yayDt~--t~--~-~~~~~i~f~n~y~----~~s~l~YNP~  234 (255)
T smart00284      177 S------------ASNAFMICGILYVTRSLGSKGEKVFYAYDTN--TG--K-EGHLDIPFENMYE----YISMLDYNPN  234 (255)
T ss_pred             c------------ccccEEEeeEEEEEccCCCCCcEEEEEEECC--CC--c-cceeeeeeccccc----cceeceeCCC
Confidence            1            2445555678999863    22347789999  77  4 2233455555433    4556777776

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.41  E-value=0.72  Score=41.94  Aligned_cols=261  Identities=9%  Similarity=0.004  Sum_probs=128.8

Q ss_pred             eEEEEEecCCCeeEEEEeCCCCCccccCCCC---CCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCC
Q 046684           52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDF---LPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVS  128 (373)
Q Consensus        52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~---~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~  128 (373)
                      -++++.+.+....++..|-..+.  .+....   .|-....++..|.-..+.+|.  ..-+++||..|.+..++.++-..
T Consensus       226 plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--rky~ysyDle~ak~~k~~~~~g~  301 (514)
T KOG2055|consen  226 PLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--RKYLYSYDLETAKVTKLKPPYGV  301 (514)
T ss_pred             ceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--ceEEEEeeccccccccccCCCCc
Confidence            34444444444666556655553  333332   233333344445425555553  56789999999999888665422


Q ss_pred             C--CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684          129 R--TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC  206 (373)
Q Consensus       129 ~--~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~  206 (373)
                      .  ....+.+-.+          .+.+++-|..          ..+.+....|+.|-..-.++.        ........
T Consensus       302 e~~~~e~FeVShd----------~~fia~~G~~----------G~I~lLhakT~eli~s~KieG--------~v~~~~fs  353 (514)
T KOG2055|consen  302 EEKSMERFEVSHD----------SNFIAIAGNN----------GHIHLLHAKTKELITSFKIEG--------VVSDFTFS  353 (514)
T ss_pred             ccchhheeEecCC----------CCeEEEcccC----------ceEEeehhhhhhhhheeeecc--------EEeeEEEe
Confidence            1  2122222111          4455555543          346777777777743333321        11111112


Q ss_pred             ECCE-EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE-EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          207 TRGM-LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV-SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       207 ~~g~-ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~-~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      -+|+ |++.++  .+.|+.+|+..+.-... ........+.+++ ..+|. |++.|.+..-+.||+.+.     ....-.
T Consensus       354 Sdsk~l~~~~~--~GeV~v~nl~~~~~~~r-f~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s-----~~~s~~  424 (514)
T KOG2055|consen  354 SDSKELLASGG--TGEVYVWNLRQNSCLHR-FVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNS-----CFASTN  424 (514)
T ss_pred             cCCcEEEEEcC--CceEEEEecCCcceEEE-EeecCccceeeeeecCCCc-eEEeccCcceEEEeccch-----hhccCC
Confidence            3444 555532  45899999998844333 1222223333343 34667 555555655578998764     222222


Q ss_pred             eechhhhhhhcCCCCCCCceEEEecCCEEEEEEc--CCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEec
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE--VGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLH  362 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  362 (373)
                      +-|......+.-..    ....+.++..|+.+..  ..+.+-.-+.-  +.    +.....|.....   ........|.
T Consensus       425 PkPik~~dNLtt~I----tsl~Fn~d~qiLAiaS~~~knalrLVHvP--S~----TVFsNfP~~n~~---vg~vtc~aFS  491 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAI----TSLQFNHDAQILAIASRVKKNALRLVHVP--SC----TVFSNFPTSNTK---VGHVTCMAFS  491 (514)
T ss_pred             CCchhhhhhhheee----eeeeeCcchhhhhhhhhccccceEEEecc--ce----eeeccCCCCCCc---ccceEEEEec
Confidence            23333333222111    2233334555555542  22334445555  33    445555555333   2345567888


Q ss_pred             cccc
Q 046684          363 PSLA  366 (373)
Q Consensus       363 p~l~  366 (373)
                      |+--
T Consensus       492 P~sG  495 (514)
T KOG2055|consen  492 PNSG  495 (514)
T ss_pred             CCCc
Confidence            8643

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.36  E-value=0.0012  Score=56.36  Aligned_cols=42  Identities=31%  Similarity=0.439  Sum_probs=38.2

Q ss_pred             CcchHHHHHHHHhcCC-----hhhHHHhhcccccchhccccccchhh
Q 046684            3 SNLHLDVLANIFSFLS-----PDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         3 ~~Lp~dll~~Il~rLP-----~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      +.||+|+|.+||.++=     ..+|.++.+|||.|+....+|.+.+.
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            5799999999998764     47999999999999999999999887

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=96.35  E-value=0.19  Score=45.21  Aligned_cols=138  Identities=11%  Similarity=0.049  Sum_probs=72.4

Q ss_pred             ceEEEEECCC-CceeeecCCCccccccceeccCCceEE-ECC-EEEEEEcCCceEEEEEECC-CCcEEecccCCCCCCCc
Q 046684          170 SMVEMYDSRH-DAWQIIGSMPVEFAVRLTVWTPNESVC-TRG-MLYWITSARAYSVIGFDIE-SNTWRELSAPMADRLEF  245 (373)
Q Consensus       170 ~~~~~yd~~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g-~ly~~gg~~~~~i~~yd~~-~~~w~~~~~~~p~~~~~  245 (373)
                      ..+.+||..+ ++++.+...+.       .......+. -++ .+|+. ......|..|++. +++++.+ ...+....-
T Consensus        12 ~~I~~~~~~~~g~l~~~~~~~~-------~~~~~~l~~spd~~~lyv~-~~~~~~i~~~~~~~~g~l~~~-~~~~~~~~p   82 (330)
T PRK11028         12 QQIHVWNLNHEGALTLLQVVDV-------PGQVQPMVISPDKRHLYVG-VRPEFRVLSYRIADDGALTFA-AESPLPGSP   82 (330)
T ss_pred             CCEEEEEECCCCceeeeeEEec-------CCCCccEEECCCCCEEEEE-ECCCCcEEEEEECCCCceEEe-eeecCCCCc
Confidence            4678888754 56776655431       111112222 244 46665 3456778888886 4566554 222221122


Q ss_pred             eeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCcc
Q 046684          246 ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLG  322 (373)
Q Consensus       246 ~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~  322 (373)
                      ..++. -+|+.+++.......+.+|++++  +....+.+..++...           .++.+..  .+..+|+.+...+.
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~~~~~-----------~~~~~~~~p~g~~l~v~~~~~~~  149 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDK--DGIPVAPIQIIEGLE-----------GCHSANIDPDNRTLWVPCLKEDR  149 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECC--CCCCCCceeeccCCC-----------cccEeEeCCCCCEEEEeeCCCCE
Confidence            23333 25654444444455688999975  222223333322111           0233322  35678888877788


Q ss_pred             EEEEEcc
Q 046684          323 MIIWRED  329 (373)
Q Consensus       323 ~~~yd~~  329 (373)
                      +.+||++
T Consensus       150 v~v~d~~  156 (330)
T PRK11028        150 IRLFTLS  156 (330)
T ss_pred             EEEEEEC
Confidence            9999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.31  E-value=0.24  Score=44.81  Aligned_cols=192  Identities=14%  Similarity=0.077  Sum_probs=100.0

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceE-EEEEeccCCCCCCCCcccceE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFR-IYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~k-l~~~gg~~~~~~~~~~~~~~~  172 (373)
                      .--+.+.+|.+..-+++..|-.+|.  .+..+.........+... +.        ++ .++.+|+.          .-+
T Consensus       224 ~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~-p~--------G~~~i~~s~rr----------ky~  282 (514)
T KOG2055|consen  224 TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFA-PN--------GHSVIFTSGRR----------KYL  282 (514)
T ss_pred             CCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeec-CC--------CceEEEecccc----------eEE
Confidence            3446667776666677887887776  333333222211112221 11        33 55555553          568


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEEC
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRN  252 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~  252 (373)
                      +.||.++.+-.++.++-.   .......... +..++.+..+.| ..+.|......+++|-.- ..++..........-+
T Consensus       283 ysyDle~ak~~k~~~~~g---~e~~~~e~Fe-VShd~~fia~~G-~~G~I~lLhakT~eli~s-~KieG~v~~~~fsSds  356 (514)
T KOG2055|consen  283 YSYDLETAKVTKLKPPYG---VEEKSMERFE-VSHDSNFIAIAG-NNGHIHLLHAKTKELITS-FKIEGVVSDFTFSSDS  356 (514)
T ss_pred             EEeeccccccccccCCCC---cccchhheeE-ecCCCCeEEEcc-cCceEEeehhhhhhhhhe-eeeccEEeeEEEecCC
Confidence            999999988887766421   0011111112 334444444433 356677777778877543 2333333333333223


Q ss_pred             CEEEEEEeecCCceEEEEeecCCCCCCeEEEEee-chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          253 QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV-PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       253 g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .+|++++++.  .+.+|++..    +  ..+... ..+..         .....|...++..+..|...+-|-+||-+
T Consensus       357 k~l~~~~~~G--eV~v~nl~~----~--~~~~rf~D~G~v---------~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  357 KELLASGGTG--EVYVWNLRQ----N--SCLHRFVDDGSV---------HGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             cEEEEEcCCc--eEEEEecCC----c--ceEEEEeecCcc---------ceeeeeecCCCceEEeccCcceEEEeccc
Confidence            4455555544  355666654    3  333331 11111         11355556677777778777888899976

>PRK04792 tolB translocation protein TolB; Provisional

Probab=96.26  E-value=1.1  Score=42.36  Aligned_cols=157  Identities=10%  Similarity=0.010  Sum_probs=82.1

Q ss_pred             eEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCC
Q 046684           52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTN  131 (373)
Q Consensus        52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~  131 (373)
                      .++.....+....++.+|..+.+-..+..............-+..|++........+++++|..+++.+++........ 
T Consensus       231 ~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~-  309 (448)
T PRK04792        231 KLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT-  309 (448)
T ss_pred             EEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc-
Confidence            4444433333467888888776654443221111122222334445554433445689999999998887754321111 


Q ss_pred             CeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-E
Q 046684          132 PAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-M  210 (373)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~  210 (373)
                       ......++         .+|+......        ....++++|..+++++.+....       .. .......-+| .
T Consensus       310 -~p~wSpDG---------~~I~f~s~~~--------g~~~Iy~~dl~~g~~~~Lt~~g-------~~-~~~~~~SpDG~~  363 (448)
T PRK04792        310 -EPSWHPDG---------KSLIFTSERG--------GKPQIYRVNLASGKVSRLTFEG-------EQ-NLGGSITPDGRS  363 (448)
T ss_pred             -ceEECCCC---------CEEEEEECCC--------CCceEEEEECCCCCEEEEecCC-------CC-CcCeeECCCCCE
Confidence             11111111         4455544222        1357899999999888774211       00 0111122344 4


Q ss_pred             EEEEEc-CCceEEEEEECCCCcEEec
Q 046684          211 LYWITS-ARAYSVIGFDIESNTWREL  235 (373)
Q Consensus       211 ly~~gg-~~~~~i~~yd~~~~~w~~~  235 (373)
                      +++... .....|+.+|+.+++.+.+
T Consensus       364 l~~~~~~~g~~~I~~~dl~~g~~~~l  389 (448)
T PRK04792        364 MIMVNRTNGKFNIARQDLETGAMQVL  389 (448)
T ss_pred             EEEEEecCCceEEEEEECCCCCeEEc
Confidence            555432 1234788999999888776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.21  E-value=1.1  Score=42.00  Aligned_cols=191  Identities=11%  Similarity=-0.002  Sum_probs=95.1

Q ss_pred             eEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCC
Q 046684           52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTN  131 (373)
Q Consensus        52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~  131 (373)
                      .++.....+....++.+|..++.-..+..............-+..|++.....+..+++++|..+++.+++........ 
T Consensus       212 ~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~-  290 (430)
T PRK00178        212 RIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT-  290 (430)
T ss_pred             EEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC-
Confidence            3433333333356777888776655553221111112222233445544333335689999999998877654322111 


Q ss_pred             CeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EEC-C
Q 046684          132 PAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTR-G  209 (373)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~-g  209 (373)
                       ......++         .+|+......        ....++++|..+++++.+....         ....... .-+ .
T Consensus       291 -~~~~spDg---------~~i~f~s~~~--------g~~~iy~~d~~~g~~~~lt~~~---------~~~~~~~~Spdg~  343 (430)
T PRK00178        291 -EPFWGKDG---------RTLYFTSDRG--------GKPQIYKVNVNGGRAERVTFVG---------NYNARPRLSADGK  343 (430)
T ss_pred             -CeEECCCC---------CEEEEEECCC--------CCceEEEEECCCCCEEEeecCC---------CCccceEECCCCC
Confidence             11111111         4565554221        1347888999888887664321         0111111 223 3


Q ss_pred             EEEEEEc-CCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          210 MLYWITS-ARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       210 ~ly~~gg-~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      .+++... .....+..+|+.+++.+.+ ..... .... ...-+|+.+++....+....+|..+.
T Consensus       344 ~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~~~~-~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        344 TLVMVHRQDGNFHVAAQDLQRGSVRIL-TDTSL-DESP-SVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             EEEEEEccCCceEEEEEECCCCCEEEc-cCCCC-CCCc-eECCCCCEEEEEEecCCceEEEEEEC
Confidence            4555432 1234689999999888877 33221 1122 23346666655544433334555543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.05  E-value=1.3  Score=41.48  Aligned_cols=192  Identities=8%  Similarity=0.051  Sum_probs=94.4

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +..|...........++++|..+++-+.+...+....  ....  .+.+       .+|++.....     +   ...++
T Consensus       210 G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~--~~~~--SpDG-------~~la~~~~~~-----g---~~~Iy  270 (430)
T PRK00178        210 GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG--APAW--SPDG-------SKLAFVLSKD-----G---NPEIY  270 (430)
T ss_pred             CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC--CeEE--CCCC-------CEEEEEEccC-----C---CceEE
Confidence            3445444332334689999999998777754432111  1111  1111       4555443221     1   25789


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEECC-EEEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSR  251 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~  251 (373)
                      ++|..++..+.+...+.        ........-+| .+++.... ....|+.+|+.+++.+.+ ... ..........-
T Consensus       271 ~~d~~~~~~~~lt~~~~--------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~-~~~~~~~~~Sp  340 (430)
T PRK00178        271 VMDLASRQLSRVTNHPA--------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFV-GNYNARPRLSA  340 (430)
T ss_pred             EEECCCCCeEEcccCCC--------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC-CCCccceEECC
Confidence            99999988877654321        01111112244 46555321 235788999998888777 221 11111111222


Q ss_pred             CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC--CccEEEEEc
Q 046684          252 NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV--GLGMIIWRE  328 (373)
Q Consensus       252 ~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~yd~  328 (373)
                      +| .|++... ......+|.++.  ++...+.+..-....            .......|..|++....  ...++..+.
T Consensus       341 dg~~i~~~~~-~~~~~~l~~~dl--~tg~~~~lt~~~~~~------------~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        341 DGKTLVMVHR-QDGNFHVAAQDL--QRGSVRILTDTSLDE------------SPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             CCCEEEEEEc-cCCceEEEEEEC--CCCCEEEccCCCCCC------------CceECCCCCEEEEEEecCCceEEEEEEC
Confidence            44 4444433 222334555544  345665554321110            23344455666665432  235777777


Q ss_pred             c
Q 046684          329 D  329 (373)
Q Consensus       329 ~  329 (373)
                      .
T Consensus       406 ~  406 (430)
T PRK00178        406 N  406 (430)
T ss_pred             C
Confidence            6

>PF13854 Kelch_5: Kelch motif

Probab=95.86  E-value=0.024  Score=33.48  Aligned_cols=35  Identities=11%  Similarity=-0.064  Sum_probs=28.4

Q ss_pred             CCCCCceeEEeeCcEEEEeeCCCC-----ceEEEEEcCcc
Q 046684           82 FLPYPVRPVSSIGSFLLLRPINST-----ILQLVLCNPFT  116 (373)
Q Consensus        82 ~~~~~~~~~~~~~g~l~~~gg~~~-----~~~~~v~np~t  116 (373)
                      |.+|..++++..++.||++||...     .++++++|..+
T Consensus         2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            567889999999999999999752     34688888765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.72  E-value=0.89  Score=38.87  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~  227 (373)
                      +.+|...-.          ...++.+++.+++-+.....       .    ...++..  +|.+|+..   ...+..+|+
T Consensus        12 g~l~~~D~~----------~~~i~~~~~~~~~~~~~~~~-------~----~~G~~~~~~~g~l~v~~---~~~~~~~d~   67 (246)
T PF08450_consen   12 GRLYWVDIP----------GGRIYRVDPDTGEVEVIDLP-------G----PNGMAFDRPDGRLYVAD---SGGIAVVDP   67 (246)
T ss_dssp             TEEEEEETT----------TTEEEEEETTTTEEEEEESS-------S----EEEEEEECTTSEEEEEE---TTCEEEEET
T ss_pred             CEEEEEEcC----------CCEEEEEECCCCeEEEEecC-------C----CceEEEEccCCEEEEEE---cCceEEEec
Confidence            677776533          25789999988775543322       1    1222333  68888884   345566699


Q ss_pred             CCCcEEecccCCC-----CCCCceeEEEECCEEEEEEeecCC---c--eEEEEeecCCCCCCeEEEEe-echhhhhhhcC
Q 046684          228 ESNTWRELSAPMA-----DRLEFATLVSRNQKLTLIGGTCGG---D--ACVWELSEGGDDDIWCLIEK-VPIEMGMRLSG  296 (373)
Q Consensus       228 ~~~~w~~~~~~~p-----~~~~~~~~~~~~g~l~~~gg~~~~---~--~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~  296 (373)
                      .+++++.+ ...+     ..+.....+.-+|.||+.......   .  -.+|.++.  + .+.+.+.. +..+.      
T Consensus        68 ~~g~~~~~-~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~--~-~~~~~~~~~~~~pN------  137 (246)
T PF08450_consen   68 DTGKVTVL-ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP--D-GKVTVVADGLGFPN------  137 (246)
T ss_dssp             TTTEEEEE-EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET--T-SEEEEEEEEESSEE------
T ss_pred             CCCcEEEE-eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC--C-CeEEEEecCccccc------
Confidence            99999887 4432     122222344458888887543221   1  36888886  3 34443332 32221      


Q ss_pred             CCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          297 GKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                            +..+...++.+|+.......++.||++
T Consensus       138 ------Gi~~s~dg~~lyv~ds~~~~i~~~~~~  164 (246)
T PF08450_consen  138 ------GIAFSPDGKTLYVADSFNGRIWRFDLD  164 (246)
T ss_dssp             ------EEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred             ------ceEECCcchheeecccccceeEEEecc
Confidence                  233344466789988888889999997

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.70  E-value=1.5  Score=39.31  Aligned_cols=165  Identities=10%  Similarity=0.024  Sum_probs=84.6

Q ss_pred             eEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc-ceEEEEECCCC-----
Q 046684          107 LQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE-SMVEMYDSRHD-----  180 (373)
Q Consensus       107 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~-~~~~~yd~~~~-----  180 (373)
                      ..+.++||.+.+-..-=.++......++..+.-..+.+   .....+++|.....+ ...... ..+.+|+....     
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~---~~~~~ivVGT~~~~~-~~~~~~~Gri~v~~i~~~~~~~~   77 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDST---GKKEYIVVGTAFNYG-EDPEPSSGRILVFEISESPENNF   77 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS------SSEEEEEEEEE--T-TSSS-S-EEEEEEEECSS-----
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccc---cccCEEEEEeccccc-ccccccCcEEEEEEEEcccccce
Confidence            35677888775532211222222223344444222110   015666666432110 011122 66888988774     


Q ss_pred             ceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc-EEecccCCCCCCCceeEEEECCEEEEEE
Q 046684          181 AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT-WRELSAPMADRLEFATLVSRNQKLTLIG  259 (373)
Q Consensus       181 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~-w~~~~~~~p~~~~~~~~~~~~g~l~~~g  259 (373)
                      +.+.+...+       ..-.-.+.+.++|.+.+..|   +.+..|++..++ +... ...........+.+.++.|++..
T Consensus        78 ~l~~i~~~~-------~~g~V~ai~~~~~~lv~~~g---~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~~~~I~vgD  146 (321)
T PF03178_consen   78 KLKLIHSTE-------VKGPVTAICSFNGRLVVAVG---NKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVFKNYILVGD  146 (321)
T ss_dssp             EEEEEEEEE-------ESS-EEEEEEETTEEEEEET---TEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEe-------ecCcceEhhhhCCEEEEeec---CEEEEEEccCcccchhh-heecceEEEEEEeccccEEEEEE
Confidence            455554432       11112344567888555533   678888888887 7776 44444445556777788665543


Q ss_pred             eecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684          260 GTCGGDACVWELSEGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       260 g~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~  290 (373)
                        ....+.++.+++  +..+-..+..-..++
T Consensus       147 --~~~sv~~~~~~~--~~~~l~~va~d~~~~  173 (321)
T PF03178_consen  147 --AMKSVSLLRYDE--ENNKLILVARDYQPR  173 (321)
T ss_dssp             --SSSSEEEEEEET--TTE-EEEEEEESS-B
T ss_pred             --cccCEEEEEEEc--cCCEEEEEEecCCCc
Confidence              333467777776  456677777655443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.70  E-value=1.8  Score=40.27  Aligned_cols=181  Identities=11%  Similarity=0.008  Sum_probs=88.4

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      ...++++|..+++.+.+........  +...  .+.+       .++++.....        ....++++|..++..+.+
T Consensus       213 ~~~i~v~d~~~g~~~~~~~~~~~~~--~~~~--spDg-------~~l~~~~~~~--------~~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       213 KPEIYVQDLATGQREKVASFPGMNG--APAF--SPDG-------SKLAVSLSKD--------GNPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             CcEEEEEECCCCCEEEeecCCCCcc--ceEE--CCCC-------CEEEEEECCC--------CCccEEEEECCCCCEEEC
Confidence            4679999999987666554332221  1222  1111       4465543221        135789999988877666


Q ss_pred             cCCCccccccceeccCCceEEECC-EEEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecC
Q 046684          186 GSMPVEFAVRLTVWTPNESVCTRG-MLYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG  263 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~  263 (373)
                      ...+..        ........+| .|++.... ....|+.+|..++++..+ ........ .....-+|+.+++.....
T Consensus       274 ~~~~~~--------~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~~~~~~-~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       274 TNGPGI--------DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFRGGYNA-SPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             CCCCCC--------CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCcc-CeEECCCCCEEEEEEccC
Confidence            543210        0001111245 45544321 234788999988888766 22211111 112233566555554443


Q ss_pred             CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--ccEEEEEcc
Q 046684          264 GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--LGMIIWRED  329 (373)
Q Consensus       264 ~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~yd~~  329 (373)
                      ....+|.++.  ++..++.+..-....            .......++.|++.....  ..+.+++.+
T Consensus       344 ~~~~i~~~d~--~~~~~~~l~~~~~~~------------~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       344 GGFNIAVMDL--DGGGERVLTDTGLDE------------SPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CceEEEEEeC--CCCCeEEccCCCCCC------------CceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            3345666554  345454443211100            133444556666654322  346666655

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=95.65  E-value=1.2  Score=38.21  Aligned_cols=152  Identities=10%  Similarity=-0.007  Sum_probs=79.1

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES  229 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~  229 (373)
                      ++.+..||.+          +.+-+|+..+..=+....+..+  ++...-+-..+-+++ --+++.+.......-+|+++
T Consensus       109 g~~VAcGGLd----------N~Csiy~ls~~d~~g~~~v~r~--l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen  109 GNFVACGGLD----------NKCSIYPLSTRDAEGNVRVSRE--LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET  175 (343)
T ss_pred             CCeEEecCcC----------ceeEEEecccccccccceeeee--ecCccceeEEEEEcC-CCceEecCCCceEEEEEccc
Confidence            6788889887          5788898875421111111100  001111222223344 33334344456677789988


Q ss_pred             CcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe
Q 046684          230 NTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA  308 (373)
Q Consensus       230 ~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~  308 (373)
                      .+-... ..-.. ......+.-.++..|+.|+.+.. ..+|++.+    .  ..+...+.-.         .......+.
T Consensus       176 g~~~~~-f~GH~gDV~slsl~p~~~ntFvSg~cD~~-aklWD~R~----~--~c~qtF~ghe---------sDINsv~ff  238 (343)
T KOG0286|consen  176 GQQTQV-FHGHTGDVMSLSLSPSDGNTFVSGGCDKS-AKLWDVRS----G--QCVQTFEGHE---------SDINSVRFF  238 (343)
T ss_pred             ceEEEE-ecCCcccEEEEecCCCCCCeEEecccccc-eeeeeccC----c--ceeEeecccc---------cccceEEEc
Confidence            765543 11100 00111122226788888876654 48999976    3  2222222111         111344555


Q ss_pred             cCCEEEEEEcCCccEEEEEccccCC
Q 046684          309 GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+|.-|..|......-.||++  .+
T Consensus       239 P~G~afatGSDD~tcRlyDlR--aD  261 (343)
T KOG0286|consen  239 PSGDAFATGSDDATCRLYDLR--AD  261 (343)
T ss_pred             cCCCeeeecCCCceeEEEeec--CC
Confidence            567777777777778888888  65

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.61  E-value=1.7  Score=39.30  Aligned_cols=115  Identities=9%  Similarity=0.125  Sum_probs=67.2

Q ss_pred             CCEEEEEEcCCceEEEEEECCCC------cEEecccCCC-CC-C-Ccee-EEEE--CCEEEEEE-eec-----CCceEEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESN------TWRELSAPMA-DR-L-EFAT-LVSR--NQKLTLIG-GTC-----GGDACVW  269 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~------~w~~~~~~~p-~~-~-~~~~-~~~~--~g~l~~~g-g~~-----~~~~~i~  269 (373)
                      +|+.+|+.  ..+.+...|+...      .|..+....+ .. + .+.. ++..  ++++|+.. +..     ...-++|
T Consensus       205 dg~~~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~  282 (352)
T TIGR02658       205 SGRLVWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF  282 (352)
T ss_pred             CCcEEEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence            56666663  3378888885433      3554411111 01 1 1111 2322  57888843 211     1114788


Q ss_pred             EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcCCccEEEEEccccCCcccEEEeccc
Q 046684          270 ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREVGLGMIIWREDEDKRKWEWVWVGGC  343 (373)
Q Consensus       270 ~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~  343 (373)
                      .++.    .+++.+..++.+....         ...+...+. .+|+..+.++.+.++|.+  +.    +.+...
T Consensus       283 ViD~----~t~kvi~~i~vG~~~~---------~iavS~Dgkp~lyvtn~~s~~VsViD~~--t~----k~i~~i  338 (352)
T TIGR02658       283 VVDA----KTGKRLRKIELGHEID---------SINVSQDAKPLLYALSTGDKTLYIFDAE--TG----KELSSV  338 (352)
T ss_pred             EEEC----CCCeEEEEEeCCCcee---------eEEECCCCCeEEEEeCCCCCcEEEEECc--CC----eEEeee
Confidence            8876    8899999988665321         233344456 778888778889999999  77    555554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.38  E-value=1.3  Score=36.77  Aligned_cols=112  Identities=14%  Similarity=0.020  Sum_probs=71.4

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      ..+-|..++-.||   .+.+.+||..|++-.+  ..............+..         ..|++-|+.+          
T Consensus        67 ~s~Dnskf~s~Gg---Dk~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNee---------sSVv~SgsfD----------  122 (307)
T KOG0316|consen   67 LSSDNSKFASCGG---DKAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEE---------SSVVASGSFD----------  122 (307)
T ss_pred             ccccccccccCCC---CceEEEEEcccCeeee--ecccccceeeEEEecCc---------ceEEEecccc----------
Confidence            4455666777777   6889999999987532  01111111112222211         4466666554          


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEE
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWR  233 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~  233 (373)
                      ..+.++|.++++-+.++.+       .........+.+.++..+. |.....+-.||+..++-.
T Consensus       123 ~s~r~wDCRS~s~ePiQil-------dea~D~V~Si~v~~heIva-GS~DGtvRtydiR~G~l~  178 (307)
T KOG0316|consen  123 SSVRLWDCRSRSFEPIQIL-------DEAKDGVSSIDVAEHEIVA-GSVDGTVRTYDIRKGTLS  178 (307)
T ss_pred             ceeEEEEcccCCCCccchh-------hhhcCceeEEEecccEEEe-eccCCcEEEEEeecceee
Confidence            6789999999988877776       3445555667778887777 456778999999876544

>PTZ00420 coronin; Provisional

Probab=95.28  E-value=3.1  Score=40.32  Aligned_cols=138  Identities=12%  Similarity=0.055  Sum_probs=70.7

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-----ECCEEEEEEeecCC---ceEEEEeecCCCCCC
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-----RNQKLTLIGGTCGG---DACVWELSEGGDDDI  279 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-----~~g~l~~~gg~~~~---~~~i~~~~~~~~~~~  279 (373)
                      +|.+.+.+ .....+..||+.+++-... ............+.     .++..++.+|.++.   .+.+|++..   ...
T Consensus       178 dG~lLat~-s~D~~IrIwD~Rsg~~i~t-l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~---~~~  252 (568)
T PTZ00420        178 KGNLLSGT-CVGKHMHIIDPRKQEIASS-FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN---TTS  252 (568)
T ss_pred             CCCEEEEE-ecCCEEEEEECCCCcEEEE-EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC---CCC
Confidence            57766654 3456799999987653221 11111111111111     24455555554432   489999874   121


Q ss_pred             eEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEE
Q 046684          280 WCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGV  359 (373)
Q Consensus       280 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~  359 (373)
                      -.....+......         .........+.+|+.|..+..+.+|+..  .+  .-..+....     .  .....|+
T Consensus       253 pl~~~~ld~~~~~---------L~p~~D~~tg~l~lsGkGD~tIr~~e~~--~~--~~~~l~~~~-----s--~~p~~g~  312 (568)
T PTZ00420        253 ALVTMSIDNASAP---------LIPHYDESTGLIYLIGKGDGNCRYYQHS--LG--SIRKVNEYK-----S--CSPFRSF  312 (568)
T ss_pred             ceEEEEecCCccc---------eEEeeeCCCCCEEEEEECCCeEEEEEcc--CC--cEEeecccc-----c--CCCccce
Confidence            1111122111100         0011223357888888788889999998  77  433332211     1  3345678


Q ss_pred             Eecccccceee
Q 046684          360 LLHPSLACACI  370 (373)
Q Consensus       360 ~~~p~l~~~~~  370 (373)
                      .|-|.-.+.|.
T Consensus       313 ~f~Pkr~~dv~  323 (568)
T PTZ00420        313 GFLPKQICDVY  323 (568)
T ss_pred             EEccccccCch
Confidence            89998766543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.24  E-value=0.47  Score=41.30  Aligned_cols=106  Identities=14%  Similarity=0.275  Sum_probs=63.7

Q ss_pred             ccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEE-----cCCceEEEEEECCCCcEEecccCC--
Q 046684          168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWIT-----SARAYSVIGFDIESNTWRELSAPM--  239 (373)
Q Consensus       168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~g-----g~~~~~i~~yd~~~~~w~~~~~~~--  239 (373)
                      ....+..||..+.+|.....-       .... -...... ++++|+.|     +.....+..||.++++|..+....  
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~-------i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~   85 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNG-------ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSN   85 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCC-------ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccc
Confidence            367899999999999987653       1111 1223334 67788887     225678999999999998884312  


Q ss_pred             --CCCCCceeEEEEC-CEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          240 --ADRLEFATLVSRN-QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       240 --p~~~~~~~~~~~~-g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                        |.+.........+ ..+++.|........+...+.    .+|..+..
T Consensus        86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG----s~W~~i~~  130 (281)
T PF12768_consen   86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG----SSWSSIGS  130 (281)
T ss_pred             cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC----CceEeccc
Confidence              2222212222223 356666654333333444444    88988866

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.13  E-value=2.9  Score=39.23  Aligned_cols=192  Identities=13%  Similarity=0.084  Sum_probs=93.3

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +..|+..........++++|..+++-+.+...+....  ...+-.++         .+|++....+     +   ...++
T Consensus       215 g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~--~~~~SpDG---------~~l~~~~s~~-----g---~~~Iy  275 (433)
T PRK04922        215 GKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING--APSFSPDG---------RRLALTLSRD-----G---NPEIY  275 (433)
T ss_pred             CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc--CceECCCC---------CEEEEEEeCC-----C---CceEE
Confidence            3344444332335679999999988776654432211  11111111         4565543222     1   25789


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEE-ECCE-EEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGM-LYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVS  250 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~  250 (373)
                      ++|..++.-+.+...+.         ......+ -+|+ +++.... ....++.+|..+++.+.+ .. ...........
T Consensus       276 ~~d~~~g~~~~lt~~~~---------~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~-~g~~~~~~~~S  344 (433)
T PRK04922        276 VMDLGSRQLTRLTNHFG---------IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TF-QGNYNARASVS  344 (433)
T ss_pred             EEECCCCCeEECccCCC---------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ec-CCCCccCEEEC
Confidence            99998887665543210         0111122 3454 4444321 134688899988888776 22 11111111122


Q ss_pred             ECC-EEEEEEeecCC-ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC--CccEEEE
Q 046684          251 RNQ-KLTLIGGTCGG-DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV--GLGMIIW  326 (373)
Q Consensus       251 ~~g-~l~~~gg~~~~-~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~y  326 (373)
                      -+| .|++.....+. .+.+|+++.    +..+.+..-..   .         ........|..|++....  ...++.+
T Consensus       345 pDG~~Ia~~~~~~~~~~I~v~d~~~----g~~~~Lt~~~~---~---------~~p~~spdG~~i~~~s~~~g~~~L~~~  408 (433)
T PRK04922        345 PDGKKIAMVHGSGGQYRIAVMDLST----GSVRTLTPGSL---D---------ESPSFAPNGSMVLYATREGGRGVLAAV  408 (433)
T ss_pred             CCCCEEEEEECCCCceeEEEEECCC----CCeEECCCCCC---C---------CCceECCCCCEEEEEEecCCceEEEEE
Confidence            244 45554432222 255555543    55544432111   0         023444456666665432  3468888


Q ss_pred             EccccCC
Q 046684          327 REDEDKR  333 (373)
Q Consensus       327 d~~~~~~  333 (373)
                      |.+  .+
T Consensus       409 ~~~--g~  413 (433)
T PRK04922        409 STD--GR  413 (433)
T ss_pred             ECC--CC
Confidence            887  55

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.08  E-value=1.7  Score=36.21  Aligned_cols=145  Identities=10%  Similarity=0.067  Sum_probs=85.0

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|.-++..|.  .+.+..|||..+...+.      ...+.--+++...+.+     +.-++.+|-+          ..++
T Consensus        28 dGnY~ltcGs--drtvrLWNp~rg~likt------YsghG~EVlD~~~s~D-----nskf~s~GgD----------k~v~   84 (307)
T KOG0316|consen   28 DGNYCLTCGS--DRTVRLWNPLRGALIKT------YSGHGHEVLDAALSSD-----NSKFASCGGD----------KAVQ   84 (307)
T ss_pred             CCCEEEEcCC--CceEEeecccccceeee------ecCCCceeeecccccc-----ccccccCCCC----------ceEE
Confidence            3444444442  57789999998775432      1122222333222221     3334444332          4789


Q ss_pred             EEECCCCce-eeecCCCccccccceeccCCceEEECC-EEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684          174 MYDSRHDAW-QIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR  251 (373)
Q Consensus       174 ~yd~~~~~W-~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~  251 (373)
                      ++|-.|++= |+...-        .  .....+.+|. .-.++.|....++..+|..++..+.+ ..+.....+...+.+
T Consensus        85 vwDV~TGkv~Rr~rgH--------~--aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi-Qildea~D~V~Si~v  153 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGH--------L--AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI-QILDEAKDGVSSIDV  153 (307)
T ss_pred             EEEcccCeeeeecccc--------c--ceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc-chhhhhcCceeEEEe
Confidence            999998762 222111        0  1112233443 33333356678899999999999888 566777777777888


Q ss_pred             CCEEEEEEeecCCceEEEEeec
Q 046684          252 NQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       252 ~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      .+...+.|..++. +..|++..
T Consensus       154 ~~heIvaGS~DGt-vRtydiR~  174 (307)
T KOG0316|consen  154 AEHEIVAGSVDGT-VRTYDIRK  174 (307)
T ss_pred             cccEEEeeccCCc-EEEEEeec
Confidence            8888887765554 58888865

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.00  E-value=3.2  Score=38.96  Aligned_cols=190  Identities=13%  Similarity=0.081  Sum_probs=93.2

Q ss_pred             EEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCC
Q 046684           53 FLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNP  132 (373)
Q Consensus        53 l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~  132 (373)
                      ++..........++.+|..++.-..+..............-+..|++.....+..+++++|+.+++.+++.......  .
T Consensus       218 la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~--~  295 (433)
T PRK04922        218 LAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID--T  295 (433)
T ss_pred             EEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc--c
Confidence            44333333335677888877665555322111111122223445655443334568999999999877664332111  1


Q ss_pred             eEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECC-E
Q 046684          133 AVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRG-M  210 (373)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g-~  210 (373)
                      ......++         .+++......     +   ...++++|..+++.+.+....         ......++ -+| .
T Consensus       296 ~~~~spDG---------~~l~f~sd~~-----g---~~~iy~~dl~~g~~~~lt~~g---------~~~~~~~~SpDG~~  349 (433)
T PRK04922        296 EPTWAPDG---------KSIYFTSDRG-----G---RPQIYRVAASGGSAERLTFQG---------NYNARASVSPDGKK  349 (433)
T ss_pred             ceEECCCC---------CEEEEEECCC-----C---CceEEEEECCCCCeEEeecCC---------CCccCEEECCCCCE
Confidence            11221111         3455443222     1   246888898888877664221         11111122 244 4


Q ss_pred             EEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          211 LYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       211 ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      +++.... ....|..+|+.+++.+.+ ...+ ..... ...-+|+.+++.........+|.++.
T Consensus       350 Ia~~~~~~~~~~I~v~d~~~g~~~~L-t~~~-~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        350 IAMVHGSGGQYRIAVMDLSTGSVRTL-TPGS-LDESP-SFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             EEEEECCCCceeEEEEECCCCCeEEC-CCCC-CCCCc-eECCCCCEEEEEEecCCceEEEEEEC
Confidence            5554322 234799999998888776 3322 11111 23346665444443333335665554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.66  E-value=0.87  Score=38.85  Aligned_cols=121  Identities=16%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      ++.-+|-++...-.  .+.+...||.+..=..+|....... -+-.+..++.        +++.+--          ...
T Consensus       195 ~atpdGsvwyasla--gnaiaridp~~~~aev~p~P~~~~~-gsRriwsdpi--------g~~witt----------wg~  253 (353)
T COG4257         195 CATPDGSVWYASLA--GNAIARIDPFAGHAEVVPQPNALKA-GSRRIWSDPI--------GRAWITT----------WGT  253 (353)
T ss_pred             EECCCCcEEEEecc--ccceEEcccccCCcceecCCCcccc-cccccccCcc--------CcEEEec----------cCC
Confidence            45557777775321  3567888999986666654322111 1111111111        4455431          123


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEEC--CEEEEEEcCCceEEEEEECCCCcEEecccCCC
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTR--GMLYWITSARAYSVIGFDIESNTWRELSAPMA  240 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p  240 (373)
                      ..+..||+.+.+|.+-+- |.      ..-...+ ..++  |.+ |+.....+.|..||+++.+++.++.+.|
T Consensus       254 g~l~rfdPs~~sW~eypL-Pg------s~arpys-~rVD~~grV-W~sea~agai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         254 GSLHRFDPSVTSWIEYPL-PG------SKARPYS-MRVDRHGRV-WLSEADAGAIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             ceeeEeCcccccceeeeC-CC------CCCCcce-eeeccCCcE-EeeccccCceeecCcccceEEEecCCCC
Confidence            568999999999987642 21      1111112 3343  344 4423456889999999999999944433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=94.65  E-value=3.3  Score=37.50  Aligned_cols=203  Identities=13%  Similarity=0.138  Sum_probs=103.0

Q ss_pred             EEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECC--CCceeee
Q 046684          108 QLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR--HDAWQII  185 (373)
Q Consensus       108 ~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~--~~~W~~~  185 (373)
                      ..+.+|..++++..+...... ..++..... +  ..     ..||+.....       .....+..|+..  +++.+.+
T Consensus        16 ~~~~~d~~~g~l~~~~~~~~~-~~Ps~l~~~-~--~~-----~~LY~~~e~~-------~~~g~v~~~~i~~~~g~L~~~   79 (345)
T PF10282_consen   16 YVFRFDEETGTLTLVQTVAEG-ENPSWLAVS-P--DG-----RRLYVVNEGS-------GDSGGVSSYRIDPDTGTLTLL   79 (345)
T ss_dssp             EEEEEETTTTEEEEEEEEEES-SSECCEEE--T--TS-----SEEEEEETTS-------STTTEEEEEEEETTTTEEEEE
T ss_pred             EEEEEcCCCCCceEeeeecCC-CCCceEEEE-e--CC-----CEEEEEEccc-------cCCCCEEEEEECCCcceeEEe
Confidence            456668899998876543222 222222232 1  11     7788886431       123455555544  4677777


Q ss_pred             cCCCccccccceeccCCceEEE--CC-EEEEEEcCCceEEEEEECCCC-cEEecc--------cCCC--CCCCceeEEEE
Q 046684          186 GSMPVEFAVRLTVWTPNESVCT--RG-MLYWITSARAYSVIGFDIESN-TWRELS--------APMA--DRLEFATLVSR  251 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~~~~~~--~g-~ly~~gg~~~~~i~~yd~~~~-~w~~~~--------~~~p--~~~~~~~~~~~  251 (373)
                      ...+.       .......+.+  ++ .+|+. ......+..|++..+ .-....        .|-+  +.....+.+..
T Consensus        80 ~~~~~-------~g~~p~~i~~~~~g~~l~va-ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~  151 (345)
T PF10282_consen   80 NSVPS-------GGSSPCHIAVDPDGRFLYVA-NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF  151 (345)
T ss_dssp             EEEEE-------SSSCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred             eeecc-------CCCCcEEEEEecCCCEEEEE-EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence            65531       1111122333  34 45554 455778888988764 322220        0111  11222333332


Q ss_pred             --CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          252 --NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       252 --~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                        +|+..++.......+.+|+++.  .+.+.+....+..+...       +.+...+...+..+|+++...+.+.+|+..
T Consensus       152 ~pdg~~v~v~dlG~D~v~~~~~~~--~~~~l~~~~~~~~~~G~-------GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  152 SPDGRFVYVPDLGADRVYVYDIDD--DTGKLTPVDSIKVPPGS-------GPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEE-T--TS-TEEEEEEEECSTTS-------SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeC--CCceEEEeeccccccCC-------CCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence              4554444334444588888876  44457665544222211       111233333467899999888888888887


Q ss_pred             ccCCcccEEEeccccc
Q 046684          330 EDKRKWEWVWVGGCCL  345 (373)
Q Consensus       330 ~~~~~~~W~~~~~~~~  345 (373)
                      .++.  +++.+...+.
T Consensus       223 ~~~g--~~~~~~~~~~  236 (345)
T PF10282_consen  223 PSDG--SLTEIQTIST  236 (345)
T ss_dssp             TTTT--EEEEEEEEES
T ss_pred             ccCC--ceeEEEEeee
Confidence            3355  6776655543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.60  E-value=4.9  Score=39.26  Aligned_cols=217  Identities=12%  Similarity=0.136  Sum_probs=113.0

Q ss_pred             CCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCC
Q 046684           84 PYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPR  163 (373)
Q Consensus        84 ~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~  163 (373)
                      +-...++.+.|++|-+.++.  ..++.||+=.+.++.-    ...-+...+..+.       +++|+.+.+.|+.+    
T Consensus       309 ~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEsYVl----KQQgH~~~i~~l~-------YSpDgq~iaTG~eD----  371 (893)
T KOG0291|consen  309 KILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSESYVL----KQQGHSDRITSLA-------YSPDGQLIATGAED----  371 (893)
T ss_pred             eeeEEEecccCCEEEEcCCc--cceEEEEEeeccceee----eccccccceeeEE-------ECCCCcEEEeccCC----
Confidence            33344455667777765543  5689999888777642    2222222333333       12337888888765    


Q ss_pred             CCCcccceEEEEECCCCcee-eecCCCccccccceeccCCceE--EECCEEEEEEcCCceEEEEEECCCC-cEEecccCC
Q 046684          164 GGATYESMVEMYDSRHDAWQ-IIGSMPVEFAVRLTVWTPNESV--CTRGMLYWITSARAYSVIGFDIESN-TWRELSAPM  239 (373)
Q Consensus       164 ~~~~~~~~~~~yd~~~~~W~-~~~~~p~~~~~~~~~~~~~~~~--~~~g~ly~~gg~~~~~i~~yd~~~~-~w~~~~~~~  239 (373)
                            ..|.+||...+--- .....          ....+++  ...|...+- ..-.+.+-++|+.+- .++....|-
T Consensus       372 ------gKVKvWn~~SgfC~vTFteH----------ts~Vt~v~f~~~g~~lls-sSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  372 ------GKVKVWNTQSGFCFVTFTEH----------TSGVTAVQFTARGNVLLS-SSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             ------CcEEEEeccCceEEEEeccC----------CCceEEEEEEecCCEEEE-eecCCeEEeeeecccceeeeecCCC
Confidence                  46888887664321 11111          0111111  123433333 234567889998764 455552332


Q ss_pred             CCCCCceeEEEEC--CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEE
Q 046684          240 ADRLEFATLVSRN--QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR  317 (373)
Q Consensus       240 p~~~~~~~~~~~~--g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  317 (373)
                      |   ..+..++.+  |.|.++|+.+...+.+|.+++    ++  .+..+..    +     ++.....++...+.+++.+
T Consensus       435 p---~QfscvavD~sGelV~AG~~d~F~IfvWS~qT----Gq--llDiLsG----H-----EgPVs~l~f~~~~~~LaS~  496 (893)
T KOG0291|consen  435 P---IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT----GQ--LLDILSG----H-----EGPVSGLSFSPDGSLLASG  496 (893)
T ss_pred             c---eeeeEEEEcCCCCEEEeeccceEEEEEEEeec----Ce--eeehhcC----C-----CCcceeeEEccccCeEEec
Confidence            2   233445555  899999887776688888866    32  2222221    1     1100111233344466666


Q ss_pred             cCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684          318 EVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS  364 (373)
Q Consensus       318 ~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~  364 (373)
                      ..+..|-++|.-  .   .|..++.++....       ..++.|.|.
T Consensus       497 SWDkTVRiW~if--~---s~~~vEtl~i~sd-------vl~vsfrPd  531 (893)
T KOG0291|consen  497 SWDKTVRIWDIF--S---SSGTVETLEIRSD-------VLAVSFRPD  531 (893)
T ss_pred             cccceEEEEEee--c---cCceeeeEeeccc-------eeEEEEcCC
Confidence            666667777775  2   2344444444433       235667765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=94.59  E-value=4  Score=38.22  Aligned_cols=223  Identities=11%  Similarity=0.022  Sum_probs=102.2

Q ss_pred             CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ...++..|........+.....+......+.-+..|++.........++++|..+++-+.+...+...  .+...  .+.
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~--~~~~~--SPD  250 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN--SAPAW--SPD  250 (427)
T ss_pred             ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc--cceEE--CCC
Confidence            35677777654443433221111112222222334444433233467999999998766665443211  11111  111


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE-EEEEEcC-Cc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITSA-RA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg~-~~  219 (373)
                      +       .+|++....+        ....++.+|..++..+.+....        .........-+|+ +++.... ..
T Consensus       251 G-------~~la~~~~~~--------g~~~Iy~~d~~~~~~~~lt~~~--------~~~~~~~wSpDG~~l~f~s~~~g~  307 (427)
T PRK02889        251 G-------RTLAVALSRD--------GNSQIYTVNADGSGLRRLTQSS--------GIDTEPFFSPDGRSIYFTSDRGGA  307 (427)
T ss_pred             C-------CEEEEEEccC--------CCceEEEEECCCCCcEECCCCC--------CCCcCeEEcCCCCEEEEEecCCCC
Confidence            1       4555543222        1357888888777666554321        0011111223454 5544321 23


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC--ceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG--DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~--~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ..++.+|..+++.+.+ .. ...........-+|+..++....+.  .+.+|+++.    .....+..-...        
T Consensus       308 ~~Iy~~~~~~g~~~~l-t~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~----g~~~~lt~~~~~--------  373 (427)
T PRK02889        308 PQIYRMPASGGAAQRV-TF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT----GQVTALTDTTRD--------  373 (427)
T ss_pred             cEEEEEECCCCceEEE-ec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC----CCeEEccCCCCc--------
Confidence            5688888887777666 21 1111111112235544333332222  255555543    544444321100        


Q ss_pred             CCCCCceEEEecCCEEEEEEcC--CccEEEEEcc
Q 046684          298 KASWGGTRCAAGNGAICLYREV--GLGMIIWRED  329 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~--~~~~~~yd~~  329 (373)
                          ........+..|++....  ...+...+..
T Consensus       374 ----~~p~~spdg~~l~~~~~~~g~~~l~~~~~~  403 (427)
T PRK02889        374 ----ESPSFAPNGRYILYATQQGGRSVLAAVSSD  403 (427)
T ss_pred             ----cCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence                124444556666665532  2347777776

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.53  E-value=3.1  Score=36.70  Aligned_cols=153  Identities=8%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEEC--CCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDS--RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~  227 (373)
                      .+-|++|...             .+|-.  ...+|+....-...    ........+.+.++..|++| . ...++.-.=
T Consensus        28 ~~G~~VG~~g-------------~il~T~DGG~tW~~~~~~~~~----~~~~~l~~I~f~~~~g~ivG-~-~g~ll~T~D   88 (302)
T PF14870_consen   28 NHGWAVGAYG-------------TILKTTDGGKTWQPVSLDLDN----PFDYHLNSISFDGNEGWIVG-E-PGLLLHTTD   88 (302)
T ss_dssp             S-EEEEETTT-------------EEEEESSTTSS-EE-----S---------EEEEEEEETTEEEEEE-E-TTEEEEESS
T ss_pred             CEEEEEecCC-------------EEEEECCCCccccccccCCCc----cceeeEEEEEecCCceEEEc-C-CceEEEecC
Confidence            6778887543             23322  24569887532110    10111223445677888875 2 233444333


Q ss_pred             CCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          228 ESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      .-++|+.++.+.+.+.....+..+ ++.+.+++..    -.||.-.+  ...+|+.+..-......           -..
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~----G~iy~T~D--gG~tW~~~~~~~~gs~~-----------~~~  151 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR----GAIYRTTD--GGKTWQAVVSETSGSIN-----------DIT  151 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT------EEEESS--TTSSEEEEE-S----EE-----------EEE
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC----CcEEEeCC--CCCCeeEcccCCcceeE-----------eEE
Confidence            567999984333333333444444 4556665432    26999888  78899987653332221           222


Q ss_pred             EecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684          307 AAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       307 ~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      ...++.+++++..-.-....|+-  ..  .|.....
T Consensus       152 r~~dG~~vavs~~G~~~~s~~~G--~~--~w~~~~r  183 (302)
T PF14870_consen  152 RSSDGRYVAVSSRGNFYSSWDPG--QT--TWQPHNR  183 (302)
T ss_dssp             E-TTS-EEEEETTSSEEEEE-TT---S--S-EEEE-
T ss_pred             ECCCCcEEEEECcccEEEEecCC--Cc--cceEEcc
Confidence            33455655555443334566777  66  7875543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=94.53  E-value=2.6  Score=35.78  Aligned_cols=104  Identities=11%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEEC-CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRN-QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP  287 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~-g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p  287 (373)
                      +.+.+.+ .....+..||+.+.+-... .. .....-..+.... +.+++ ++..+..+.+|++..    .  +.+..+.
T Consensus       105 ~~~~~~~-~~~~~i~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~-~~~~~~~i~i~d~~~----~--~~~~~~~  174 (289)
T cd00200         105 GRILSSS-SRDKTIKVWDVETGKCLTT-LR-GHTDWVNSVAFSPDGTFVA-SSSQDGTIKLWDLRT----G--KCVATLT  174 (289)
T ss_pred             CCEEEEe-cCCCeEEEEECCCcEEEEE-ec-cCCCcEEEEEEcCcCCEEE-EEcCCCcEEEEEccc----c--ccceeEe
Confidence            3555553 3467899999985543332 12 1111112233333 44444 444344578998854    1  2222222


Q ss_pred             hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .....        . .......++..+++++..+.+.+||..  +.
T Consensus       175 ~~~~~--------i-~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~  209 (289)
T cd00200         175 GHTGE--------V-NSVAFSPDGEKLLSSSSDGTIKLWDLS--TG  209 (289)
T ss_pred             cCccc--------c-ceEEECCCcCEEEEecCCCcEEEEECC--CC
Confidence            11000        0 122222344344445556789999998  65

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=94.46  E-value=1.9  Score=40.56  Aligned_cols=113  Identities=15%  Similarity=0.047  Sum_probs=65.5

Q ss_pred             cEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEE
Q 046684           95 SFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEM  174 (373)
Q Consensus        95 g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~  174 (373)
                      --||+.|.   ..+++.+|...++|..  |+........++-++..         +.++++|+..          ..|+.
T Consensus       146 cDly~~gs---g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~---------hgLla~Gt~~----------g~VEf  201 (703)
T KOG2321|consen  146 CDLYLVGS---GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEE---------HGLLACGTED----------GVVEF  201 (703)
T ss_pred             ccEEEeec---CcceEEEEcccccccc--ccccccccceeeeecCc---------cceEEecccC----------ceEEE
Confidence            33666665   5789999999998853  33222222222222211         6688888754          46899


Q ss_pred             EECCCCceee-------ecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEec
Q 046684          175 YDSRHDAWQI-------IGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWREL  235 (373)
Q Consensus       175 yd~~~~~W~~-------~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~  235 (373)
                      +|+++.+=-.       +...|..    .......+..+-|+-|.+..|...+.++.||+.+.+=..+
T Consensus       202 wDpR~ksrv~~l~~~~~v~s~pg~----~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDAASSVNSHPGG----DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV  265 (703)
T ss_pred             ecchhhhhheeeecccccCCCccc----cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence            9998765321       1112211    1111122333445477777788899999999987654433

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=94.14  E-value=0.84  Score=39.00  Aligned_cols=84  Identities=14%  Similarity=0.114  Sum_probs=51.3

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC---------cccceEEEEECCCCceeeecCCCccc
Q 046684          122 LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA---------TYESMVEMYDSRHDAWQIIGSMPVEF  192 (373)
Q Consensus       122 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~---------~~~~~~~~yd~~~~~W~~~~~~p~~~  192 (373)
                      +...|.+|+.+++.++.... .      .-++++||+.-.+.+..         +-...|+..|.+-+..+.-. +|.- 
T Consensus        81 vGdvP~aRYGHt~~vV~SrG-K------ta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~-lpEl-  151 (337)
T PF03089_consen   81 VGDVPEARYGHTINVVHSRG-K------TACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHT-LPEL-  151 (337)
T ss_pred             cCCCCcccccceEEEEEECC-c------EEEEEECCcccCCccccchhhcceeccCCCeEEEEecccccccccc-chhh-
Confidence            46788999999998887331 1      44788888652221111         12346777888887765432 2210 


Q ss_pred             cccceeccCCceEEECCEEEEEEcC
Q 046684          193 AVRLTVWTPNESVCTRGMLYWITSA  217 (373)
Q Consensus       193 ~~~~~~~~~~~~~~~~g~ly~~gg~  217 (373)
                         ......+.+..-++.+|++||.
T Consensus       152 ---~dG~SFHvslar~D~VYilGGH  173 (337)
T PF03089_consen  152 ---QDGQSFHVSLARNDCVYILGGH  173 (337)
T ss_pred             ---cCCeEEEEEEecCceEEEEccE
Confidence               2333445556678999999864

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=93.98  E-value=5.2  Score=37.15  Aligned_cols=144  Identities=13%  Similarity=0.017  Sum_probs=75.7

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..++.+|..+++...+.......... .-+.+| .+++........+++++|..+++.+.+.........+  ....++ 
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~--~~s~dg-  289 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP--SWSPDG-  289 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE--EECCCC-
Confidence            56777888776554443221111122 223344 4555444334567999999998877765432211111  111110 


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCEEEEEEcC--C
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGMLYWITSA--R  218 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~ly~~gg~--~  218 (373)
                              .+|+......     +   ...++++|..+++++.+....         ......+ .-+|+.+++...  .
T Consensus       290 --------~~l~~~s~~~-----g---~~~iy~~d~~~~~~~~l~~~~---------~~~~~~~~spdg~~i~~~~~~~~  344 (417)
T TIGR02800       290 --------KSIAFTSDRG-----G---SPQIYMMDADGGEVRRLTFRG---------GYNASPSWSPDGDLIAFVHREGG  344 (417)
T ss_pred             --------CEEEEEECCC-----C---CceEEEEECCCCCEEEeecCC---------CCccCeEECCCCCEEEEEEccCC
Confidence                    4555544322     1   247889998888877664321         1111112 235655544322  2


Q ss_pred             ceEEEEEECCCCcEEec
Q 046684          219 AYSVIGFDIESNTWREL  235 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~  235 (373)
                      ...|..+|+.++.++.+
T Consensus       345 ~~~i~~~d~~~~~~~~l  361 (417)
T TIGR02800       345 GFNIAVMDLDGGGERVL  361 (417)
T ss_pred             ceEEEEEeCCCCCeEEc
Confidence            34799999998877766

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.97  E-value=6  Score=37.80  Aligned_cols=118  Identities=14%  Similarity=0.175  Sum_probs=65.1

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCC-----eEEEEEcCCCCCCCCCceEEEEEeccCCCC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNP-----AVGIVMEGPAQHGPFPNFRIYVAGGMSDEP  162 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~-----~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~  162 (373)
                      -...+|.+|+...   ...++.+|+.|++  |+.-...+......     ..++.+     .     .+||+.. .+   
T Consensus        57 Pvv~~g~vy~~~~---~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~-----~-----~~V~v~~-~~---  119 (488)
T cd00216          57 PLVVDGDMYFTTS---HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWD-----P-----RKVFFGT-FD---  119 (488)
T ss_pred             CEEECCEEEEeCC---CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEcc-----C-----CeEEEec-CC---
Confidence            4566999999776   4678999999876  76422111001000     111111     0     5666532 22   


Q ss_pred             CCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEc-------CCceEEEEEECCCC--c
Q 046684          163 RGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS-------ARAYSVIGFDIESN--T  231 (373)
Q Consensus       163 ~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg-------~~~~~i~~yd~~~~--~  231 (373)
                             ..+..+|.++++  |+.-...+..    .......+.++.++.+|+-..       .....++++|.+++  .
T Consensus       120 -------g~v~AlD~~TG~~~W~~~~~~~~~----~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         120 -------GRLVALDAETGKQVWKFGNNDQVP----PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             -------CeEEEEECCCCCEeeeecCCCCcC----cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence                   368888988766  8765432100    001122344667777776421       12467999999876  4


Q ss_pred             EEec
Q 046684          232 WREL  235 (373)
Q Consensus       232 w~~~  235 (373)
                      |+.-
T Consensus       189 W~~~  192 (488)
T cd00216         189 WRFY  192 (488)
T ss_pred             eEee
Confidence            7653

The alignment model contains an 8-bladed beta-propeller.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=93.54  E-value=4.1  Score=34.51  Aligned_cols=103  Identities=12%  Similarity=0.102  Sum_probs=49.7

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP  287 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p  287 (373)
                      +.+.+. +...+.+..||+.+.+-... ...... .-..+... +++.+++++. +..+.+|++..      ...+..+.
T Consensus       147 ~~~l~~-~~~~~~i~i~d~~~~~~~~~-~~~~~~-~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~------~~~~~~~~  216 (289)
T cd00200         147 GTFVAS-SSQDGTIKLWDLRTGKCVAT-LTGHTG-EVNSVAFSPDGEKLLSSSS-DGTIKLWDLST------GKCLGTLR  216 (289)
T ss_pred             CCEEEE-EcCCCcEEEEEcccccccee-EecCcc-ccceEEECCCcCEEEEecC-CCcEEEEECCC------Cceecchh
Confidence            344444 34467788999875432222 111111 11122222 4434444443 44578998853      22232221


Q ss_pred             hhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCCccEEEEEccccCC
Q 046684          288 IEMGMRLSGGKASWGGTRCAAG-NGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .....          ...+... ++.+++.++..+.+.+||..  +.
T Consensus       217 ~~~~~----------i~~~~~~~~~~~~~~~~~~~~i~i~~~~--~~  251 (289)
T cd00200         217 GHENG----------VNSVAFSPDGYLLASGSEDGTIRVWDLR--TG  251 (289)
T ss_pred             hcCCc----------eEEEEEcCCCcEEEEEcCCCcEEEEEcC--Cc
Confidence            10000          1222233 45666666657789999998  65

>PRK03629 tolB translocation protein TolB; Provisional

Probab=93.49  E-value=6.7  Score=36.78  Aligned_cols=223  Identities=11%  Similarity=0.014  Sum_probs=102.9

Q ss_pred             CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      ...++..|.....-..+.....+.... .-+.+| .|...........++++|..+++-+.+...+....  ....  .+
T Consensus       178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p-~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~--~~~~--SP  252 (429)
T PRK03629        178 PYELRVSDYDGYNQFVVHRSPQPLMSP-AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG--APAF--SP  252 (429)
T ss_pred             ceeEEEEcCCCCCCEEeecCCCceeee-EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC--CeEE--CC
Confidence            357777776544333332211111111 223344 33333222234679999999887776655443221  1111  11


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCE-EEEEEcC-
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGM-LYWITSA-  217 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~gg~-  217 (373)
                      .+       .+|+......     +   ...++++|..++..+.+...+.         ......+ -+|+ |++.... 
T Consensus       253 DG-------~~La~~~~~~-----g---~~~I~~~d~~tg~~~~lt~~~~---------~~~~~~wSPDG~~I~f~s~~~  308 (429)
T PRK03629        253 DG-------SKLAFALSKT-----G---SLNLYVMDLASGQIRQVTDGRS---------NNTEPTWFPDSQNLAYTSDQA  308 (429)
T ss_pred             CC-------CEEEEEEcCC-----C---CcEEEEEECCCCCEEEccCCCC---------CcCceEECCCCCEEEEEeCCC
Confidence            11       4565543221     1   2468999998887776654321         0111122 2454 4444221 


Q ss_pred             CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          218 RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       218 ~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ....++.+|+.+++-..+ ... ..........-+|+.+++.........+|.++.  ++..++.+......        
T Consensus       309 g~~~Iy~~d~~~g~~~~l-t~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl--~~g~~~~Lt~~~~~--------  376 (429)
T PRK03629        309 GRPQVYKVNINGGAPQRI-TWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL--ATGGVQVLTDTFLD--------  376 (429)
T ss_pred             CCceEEEEECCCCCeEEe-ecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEEC--CCCCeEEeCCCCCC--------
Confidence            134788889988776666 221 111111122335554444333322224444443  34666655431100        


Q ss_pred             CCCCCceEEEecCCEEEEEEcCC--ccEEEEEcc
Q 046684          298 KASWGGTRCAAGNGAICLYREVG--LGMIIWRED  329 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~~yd~~  329 (373)
                          ....+...|..|++.....  ..+.+.+.+
T Consensus       377 ----~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        377 ----ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             ----CCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence                0244444555566554322  246666776

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=93.32  E-value=4.1  Score=37.07  Aligned_cols=104  Identities=16%  Similarity=0.268  Sum_probs=58.0

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCc-EEecccCCCCCCCcee
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNT-WRELSAPMADRLEFAT  247 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~-w~~~~~~~p~~~~~~~  247 (373)
                      ..+.+||...+.  .+..+|..       ......+.+ +|-.|.........|..+|+...+ +..+  +.+.... ..
T Consensus       369 ~~vkiwdlks~~--~~a~Fpgh-------t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--~l~~~~~-v~  436 (506)
T KOG0289|consen  369 GVVKIWDLKSQT--NVAKFPGH-------TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--QLDEKKE-VN  436 (506)
T ss_pred             ceEEEEEcCCcc--ccccCCCC-------CCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee--ecccccc-ce
Confidence            568889987776  55555421       111122233 333333334445569999997644 3333  3333221 11


Q ss_pred             EEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684          248 LVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       248 ~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~  290 (373)
                      ...+  -|....++|   ..+.||..+.  .++.|+++...+.-.
T Consensus       437 s~~fD~SGt~L~~~g---~~l~Vy~~~k--~~k~W~~~~~~~~~s  476 (506)
T KOG0289|consen  437 SLSFDQSGTYLGIAG---SDLQVYICKK--KTKSWTEIKELADHS  476 (506)
T ss_pred             eEEEcCCCCeEEeec---ceeEEEEEec--ccccceeeehhhhcc
Confidence            2222  355555553   3478999887  789999998877543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.14  E-value=2.5  Score=40.75  Aligned_cols=116  Identities=12%  Similarity=0.182  Sum_probs=68.0

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCC--------CCCeEEEEEcCCCCCCCCCceEEEEEeccC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSR--------TNPAVGIVMEGPAQHGPFPNFRIYVAGGMS  159 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~--------~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~  159 (373)
                      -...+|.||+...   ...++.+|..|++  |+.-+..+...        .....++.+           ++||+.. .+
T Consensus        65 Pvv~~g~vyv~s~---~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-----------~~v~v~t-~d  129 (527)
T TIGR03075        65 PLVVDGVMYVTTS---YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-----------GKVFFGT-LD  129 (527)
T ss_pred             CEEECCEEEEECC---CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-----------CEEEEEc-CC
Confidence            4456999999766   4578899999876  76433222111        111223332           6777643 22


Q ss_pred             CCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCCc--
Q 046684          160 DEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESNT--  231 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~~--  231 (373)
                                ..+..+|.++++  |+.-..-+.     .......+.++.+|.+|+-...    ....+.+||.++++  
T Consensus       130 ----------g~l~ALDa~TGk~~W~~~~~~~~-----~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       130 ----------ARLVALDAKTGKVVWSKKNGDYK-----AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             ----------CEEEEEECCCCCEEeeccccccc-----ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence                      368999998876  865432110     0111223456788988875321    24689999999874  


Q ss_pred             EEec
Q 046684          232 WREL  235 (373)
Q Consensus       232 w~~~  235 (373)
                      |+.-
T Consensus       195 W~~~  198 (527)
T TIGR03075       195 WRRY  198 (527)
T ss_pred             Eecc
Confidence            7643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.82  E-value=6  Score=34.35  Aligned_cols=100  Identities=15%  Similarity=0.096  Sum_probs=57.9

Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEE--------EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLV--------SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG  291 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~--------~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~  291 (373)
                      .-|..||.++++-+.+ .....+.......        -.+++|++.-.....++-+|.++.  .+..=+++..-|...-
T Consensus        78 SHVH~yd~e~~~VrLL-Wkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr--~~g~~~~L~~~ps~KG  154 (339)
T PF09910_consen   78 SHVHEYDTENDSVRLL-WKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDR--RTGKAEKLSSNPSLKG  154 (339)
T ss_pred             ceEEEEEcCCCeEEEE-EecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcc--cCCceeeccCCCCcCc
Confidence            4588999999876655 3322211111111        237899998776666688999986  5555555554443321


Q ss_pred             hhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccE
Q 046684          292 MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEW  337 (373)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W  337 (373)
                      ...       ...+|+..++    +......+.+||+.  ++  +|
T Consensus       155 ~~~-------~D~a~F~i~~----~~~g~~~i~~~Dli--~~--~~  185 (339)
T PF09910_consen  155 TLV-------HDYACFGINN----FHKGVSGIHCLDLI--SG--KW  185 (339)
T ss_pred             eEe-------eeeEEEeccc----cccCCceEEEEEcc--CC--eE
Confidence            110       0234444321    11234589999999  99  88

>PLN00181 protein SPA1-RELATED; Provisional

Probab=92.72  E-value=11  Score=38.61  Aligned_cols=107  Identities=7%  Similarity=-0.030  Sum_probs=55.6

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCc--EEecccCCCCCCCc-eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESNT--WRELSAPMADRLEF-ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~~-~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      +|...+.| ...+.|..||+.+..  ...+    ..+... ..+...++..++.++. +..+.+|++........|..+.
T Consensus       629 ~g~~latg-s~dg~I~iwD~~~~~~~~~~~----~~h~~~V~~v~f~~~~~lvs~s~-D~~ikiWd~~~~~~~~~~~~l~  702 (793)
T PLN00181        629 SGRSLAFG-SADHKVYYYDLRNPKLPLCTM----IGHSKTVSYVRFVDSSTLVSSST-DNTLKLWDLSMSISGINETPLH  702 (793)
T ss_pred             CCCEEEEE-eCCCeEEEEECCCCCccceEe----cCCCCCEEEEEEeCCCEEEEEEC-CCEEEEEeCCCCccccCCcceE
Confidence            35666654 456789999987643  2222    111111 1233345665555543 4458999986411112354444


Q ss_pred             eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .+..-.         ..........++.+++.++.++.+.+|+..
T Consensus       703 ~~~gh~---------~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        703 SFMGHT---------NVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             EEcCCC---------CCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            433210         000122333355667777777789999987

>PRK03629 tolB translocation protein TolB; Provisional

Probab=92.67  E-value=8.9  Score=35.96  Aligned_cols=170  Identities=11%  Similarity=-0.023  Sum_probs=81.8

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..++.+|..+.+-..+.......... .-+.+| .|++........+++++|..+++.+++.......  .... . .+.
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~~~~~~-~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~--~~~~-w-SPD  297 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPRHNGAP-AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNN--TEPT-W-FPD  297 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCCCcCCe-EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCc--CceE-E-CCC
Confidence            56667777665544442211111112 234444 4555433333567999999998887765432211  1111 1 111


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE-EEEEEc-CCc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITS-ARA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg-~~~  219 (373)
                      +       .+|+......        ....++.+|..++.-+.+....       . ........-+|+ +++... ...
T Consensus       298 G-------~~I~f~s~~~--------g~~~Iy~~d~~~g~~~~lt~~~-------~-~~~~~~~SpDG~~Ia~~~~~~g~  354 (429)
T PRK03629        298 S-------QNLAYTSDQA--------GRPQVYKVNINGGAPQRITWEG-------S-QNQDADVSSDGKFMVMVSSNGGQ  354 (429)
T ss_pred             C-------CEEEEEeCCC--------CCceEEEEECCCCCeEEeecCC-------C-CccCEEECCCCCEEEEEEccCCC
Confidence            1       3454443221        1347888888877665553221       0 011111223454 444332 123


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG  263 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~  263 (373)
                      ..+..+|+++++.+.+ ... ...... ...-+|+..++....+
T Consensus       355 ~~I~~~dl~~g~~~~L-t~~-~~~~~p-~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        355 QHIAKQDLATGGVQVL-TDT-FLDETP-SIAPNGTMVIYSSSQG  395 (429)
T ss_pred             ceEEEEECCCCCeEEe-CCC-CCCCCc-eECCCCCEEEEEEcCC
Confidence            5688899999998877 322 111122 2334666555554443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.43  E-value=7.1  Score=35.61  Aligned_cols=178  Identities=13%  Similarity=0.103  Sum_probs=89.2

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECC-----CC
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR-----HD  180 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~-----~~  180 (373)
                      .+.+.+||..+++-...-.... ..-.++......         ..+.+.|+++          ..+-++|.+     ..
T Consensus       265 D~TV~lWD~~~g~p~~s~~~~~-k~Vq~l~wh~~~---------p~~LLsGs~D----------~~V~l~D~R~~~~s~~  324 (463)
T KOG0270|consen  265 DKTVKLWDVDTGKPKSSITHHG-KKVQTLEWHPYE---------PSVLLSGSYD----------GTVALKDCRDPSNSGK  324 (463)
T ss_pred             CceEEEEEcCCCCcceehhhcC-CceeEEEecCCC---------ceEEEecccc----------ceEEeeeccCccccCc
Confidence            5678999999987544222111 111122222211         3455555554          456666665     34


Q ss_pred             ceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC---cEEecccCCCCCCCceeEEEECCE-EE
Q 046684          181 AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN---TWRELSAPMADRLEFATLVSRNQK-LT  256 (373)
Q Consensus       181 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~---~w~~~~~~~p~~~~~~~~~~~~g~-l~  256 (373)
                      .|+.-.....      ....      .....+++.+...+.+.-||..+.   .|+.. + .....  .++..-... =+
T Consensus       325 ~wk~~g~VEk------v~w~------~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-A-Hd~~I--Sgl~~n~~~p~~  388 (463)
T KOG0270|consen  325 EWKFDGEVEK------VAWD------PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-A-HDDEI--SGLSVNIQTPGL  388 (463)
T ss_pred             eEEeccceEE------EEec------CCCceeEEEecCCceEEeeecCCCCCceeEEE-e-ccCCc--ceEEecCCCCcc
Confidence            5776555421      1111      112223333444556666676654   35443 1 11111  122221111 12


Q ss_pred             EEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          257 LIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       257 ~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +..+.....+.+|++..  +..+=.....+...+..          ++.+......+|.+||....+.++|..  ++
T Consensus       389 l~t~s~d~~Vklw~~~~--~~~~~v~~~~~~~~rl~----------c~~~~~~~a~~la~GG~k~~~~vwd~~--~~  451 (463)
T KOG0270|consen  389 LSTASTDKVVKLWKFDV--DSPKSVKEHSFKLGRLH----------CFALDPDVAFTLAFGGEKAVLRVWDIF--TN  451 (463)
T ss_pred             eeeccccceEEEEeecC--CCCccccccccccccee----------ecccCCCcceEEEecCccceEEEeecc--cC
Confidence            22233334489999987  55555555555555532          344444566788999988788899988  66

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.21  E-value=7.6  Score=34.14  Aligned_cols=246  Identities=16%  Similarity=0.131  Sum_probs=123.1

Q ss_pred             CceEEEEEecCCCeeEEEEeCCCCCcccc-CCC-CCCCCceeEEeeCcEEEEeeCC---CCceEEEEEcCcccceeccCC
Q 046684           50 PAWFLALPTRNRGLCCYVHNPVSDKWHVL-SLD-FLPYPVRPVSSIGSFLLLRPIN---STILQLVLCNPFTRQFRYLPL  124 (373)
Q Consensus        50 ~~~l~~~~~~~~~~~~~~~d~~~~~w~~~-~~~-~~~~~~~~~~~~~g~l~~~gg~---~~~~~~~v~np~t~~w~~lp~  124 (373)
                      .+..++|..+.. ....+||+.+..-... ..+ .-..+.|.+.+.+|..+.....   .....+-|||.. +.++++..
T Consensus        16 ~~~avafaRRPG-~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E   93 (305)
T PF07433_consen   16 RPEAVAFARRPG-TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGE   93 (305)
T ss_pred             CCeEEEEEeCCC-cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeE
Confidence            445555544433 6777799988765433 222 2223556677776554444332   235578999999 67777776


Q ss_pred             CCCCCCCCe-EEEEEcCCCCCCCCCceEEEE-EeccCCCCCCCC------cccceEEEEECCCCceeeecCCCccccccc
Q 046684          125 LNVSRTNPA-VGIVMEGPAQHGPFPNFRIYV-AGGMSDEPRGGA------TYESMVEMYDSRHDAWQIIGSMPVEFAVRL  196 (373)
Q Consensus       125 ~~~~~~~~~-~~~~~~~~~~~~~~~~~kl~~-~gg~~~~~~~~~------~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~  196 (373)
                      .+..--.+. +.+..++         ..++| -||..+.+..+.      .....+-..|..+++=.....+|.+.   .
T Consensus        94 ~~s~GIGPHel~l~pDG---------~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~---~  161 (305)
T PF07433_consen   94 FPSHGIGPHELLLMPDG---------ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL---H  161 (305)
T ss_pred             ecCCCcChhhEEEcCCC---------CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc---c
Confidence            664333333 3333221         23444 467664432221      22334555678887643333333210   1


Q ss_pred             eeccCCceEEECCEEEEEE---cC---CceEEEEEECCCCcEEecccCCCC---CCCceeEEEE--CCEEEEEEeecCCc
Q 046684          197 TVWTPNESVCTRGMLYWIT---SA---RAYSVIGFDIESNTWRELSAPMAD---RLEFATLVSR--NQKLTLIGGTCGGD  265 (373)
Q Consensus       197 ~~~~~~~~~~~~g~ly~~g---g~---~~~~i~~yd~~~~~w~~~~~~~p~---~~~~~~~~~~--~g~l~~~gg~~~~~  265 (373)
                      .-...+-.+--+|.+.+-.   |.   ...-+..++.. +..+.++.+...   -..+.+.+..  +|.+..+..-.+..
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            1111222223345554443   11   11222222222 223333122111   1122333333  45567676666666


Q ss_pred             eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          266 ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       266 ~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      +.+|+..+    .+|.....++..              +.++..++. |++....+.++..+..
T Consensus       241 ~~~~d~~t----g~~~~~~~l~D~--------------cGva~~~~~-f~~ssG~G~~~~~~~~  285 (305)
T PF07433_consen  241 VAVWDAAT----GRLLGSVPLPDA--------------CGVAPTDDG-FLVSSGQGQLIRLSPD  285 (305)
T ss_pred             EEEEECCC----CCEeeccccCce--------------eeeeecCCc-eEEeCCCccEEEccCc
Confidence            88998755    999888888763              444555444 6665555566666665

>PRK05137 tolB translocation protein TolB; Provisional

Probab=92.21  E-value=10  Score=35.60  Aligned_cols=156  Identities=9%  Similarity=-0.059  Sum_probs=78.3

Q ss_pred             eEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCC
Q 046684           52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT  130 (373)
Q Consensus        52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~  130 (373)
                      .++.....+....++.+|..+.....+.......... .-+-+| .|++........+++++|..+++.+++...+....
T Consensus       215 ~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~  293 (435)
T PRK05137        215 EITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT  293 (435)
T ss_pred             EEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC
Confidence            3433333333367888888777665553222111122 223344 45444433445689999999988777654332111


Q ss_pred             CCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-
Q 046684          131 NPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-  209 (373)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-  209 (373)
                      .  ....  +.+       .+|+......     +   ...++++|..++..+.+...+.        ........-+| 
T Consensus       294 ~--~~~s--pDG-------~~i~f~s~~~-----g---~~~Iy~~d~~g~~~~~lt~~~~--------~~~~~~~SpdG~  346 (435)
T PRK05137        294 S--PSYS--PDG-------SQIVFESDRS-----G---SPQLYVMNADGSNPRRISFGGG--------RYSTPVWSPRGD  346 (435)
T ss_pred             c--eeEc--CCC-------CEEEEEECCC-----C---CCeEEEEECCCCCeEEeecCCC--------cccCeEECCCCC
Confidence            1  1111  110       4455443221     1   3478899988777666543211        01111122344 


Q ss_pred             EEEEEEc-CCceEEEEEECCCCcEEec
Q 046684          210 MLYWITS-ARAYSVIGFDIESNTWREL  235 (373)
Q Consensus       210 ~ly~~gg-~~~~~i~~yd~~~~~w~~~  235 (373)
                      .+++... .....+..+|+.++..+.+
T Consensus       347 ~ia~~~~~~~~~~i~~~d~~~~~~~~l  373 (435)
T PRK05137        347 LIAFTKQGGGQFSIGVMKPDGSGERIL  373 (435)
T ss_pred             EEEEEEcCCCceEEEEEECCCCceEec
Confidence            4444431 2235788999887766655

>PLN00181 protein SPA1-RELATED; Provisional

Probab=92.20  E-value=15  Score=37.56  Aligned_cols=198  Identities=10%  Similarity=-0.033  Sum_probs=84.9

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      ++.+++.++.  ...+.+||..+++-..  .+... ......... .  .+     ++.++.|+.+          ..+.
T Consensus       587 ~~~~L~Sgs~--Dg~v~iWd~~~~~~~~--~~~~~-~~v~~v~~~-~--~~-----g~~latgs~d----------g~I~  643 (793)
T PLN00181        587 DPTLLASGSD--DGSVKLWSINQGVSIG--TIKTK-ANICCVQFP-S--ES-----GRSLAFGSAD----------HKVY  643 (793)
T ss_pred             CCCEEEEEcC--CCEEEEEECCCCcEEE--EEecC-CCeEEEEEe-C--CC-----CCEEEEEeCC----------CeEE
Confidence            5555555553  4678999987754321  11111 111111111 1  11     5566666554          4688


Q ss_pred             EEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC----cEEecccCCCCCCCc--
Q 046684          174 MYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN----TWRELSAPMADRLEF--  245 (373)
Q Consensus       174 ~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~----~w~~~~~~~p~~~~~--  245 (373)
                      +||.++..  ...+...        . ..-..+.+.++...+.+ .....|..+|+...    .+..+ ..+..+...  
T Consensus       644 iwD~~~~~~~~~~~~~h--------~-~~V~~v~f~~~~~lvs~-s~D~~ikiWd~~~~~~~~~~~~l-~~~~gh~~~i~  712 (793)
T PLN00181        644 YYDLRNPKLPLCTMIGH--------S-KTVSYVRFVDSSTLVSS-STDNTLKLWDLSMSISGINETPL-HSFMGHTNVKN  712 (793)
T ss_pred             EEECCCCCccceEecCC--------C-CCEEEEEEeCCCEEEEE-ECCCEEEEEeCCCCccccCCcce-EEEcCCCCCee
Confidence            99987543  1111110        0 00112233455554443 34566888888643    23222 111111111  


Q ss_pred             eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEE
Q 046684          246 ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMII  325 (373)
Q Consensus       246 ~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  325 (373)
                      ......++.+++.|+ .+..+.+|+...  ....|+........................+...++..++.++..+.|.+
T Consensus       713 ~v~~s~~~~~lasgs-~D~~v~iw~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i  789 (793)
T PLN00181        713 FVGLSVSDGYIATGS-ETNEVFVYHKAF--PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI  789 (793)
T ss_pred             EEEEcCCCCEEEEEe-CCCEEEEEECCC--CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence            111223455444444 445578998754  22233322111100000000000000012222235566677777778888


Q ss_pred             EEc
Q 046684          326 WRE  328 (373)
Q Consensus       326 yd~  328 (373)
                      +|+
T Consensus       790 ~~~  792 (793)
T PLN00181        790 LEM  792 (793)
T ss_pred             Eec
Confidence            875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=91.90  E-value=13  Score=35.97  Aligned_cols=240  Identities=12%  Similarity=0.034  Sum_probs=121.6

Q ss_pred             eEEEEeCCCCCccccCCCCCC--CCceeEEee-CcEEEEeeCCCCceEEEEEcCccccee-ccCCCCCCCCCCeEEEEEc
Q 046684           64 CCYVHNPVSDKWHVLSLDFLP--YPVRPVSSI-GSFLLLRPINSTILQLVLCNPFTRQFR-YLPLLNVSRTNPAVGIVME  139 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~~~~~~--~~~~~~~~~-~g~l~~~gg~~~~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~~~  139 (373)
                      .+..||+.. .|...+....+  +.--+++-+ +|.++-.|.   ...+.-||+.+.+-+ .+.+....-+  +++... 
T Consensus        48 ~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~---sg~i~EwDl~~lk~~~~~d~~gg~IW--siai~p-  120 (691)
T KOG2048|consen   48 NIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL---SGSITEWDLHTLKQKYNIDSNGGAIW--SIAINP-  120 (691)
T ss_pred             cEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecC---CceEEEEecccCceeEEecCCCccee--EEEeCC-
Confidence            455588765 68765433323  333346655 788888877   578888999886532 2222222211  222211 


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEE-EEEcCC
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLY-WITSAR  218 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly-~~gg~~  218 (373)
                      .         +.+..+|..+     +     .+..++...+.=+--..++.+       -...-.+..++... +++|..
T Consensus       121 ~---------~~~l~Igcdd-----G-----vl~~~s~~p~~I~~~r~l~rq-------~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen  121 E---------NTILAIGCDD-----G-----VLYDFSIGPDKITYKRSLMRQ-------KSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             c---------cceEEeecCC-----c-----eEEEEecCCceEEEEeecccc-------cceEEEEEecCCccEEEeccc
Confidence            1         4566666443     1     445555555554433333211       01111233454444 666666


Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCC---c----eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLE---F----ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG  291 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~---~----~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~  291 (373)
                      ...|.++|..+++=-.+ ..+...+.   .    -++..+.+...+.| .....+.+|+.+.    .  +.+.....-  
T Consensus       175 Dg~Iriwd~~~~~t~~~-~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg-DS~G~V~FWd~~~----g--TLiqS~~~h--  244 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHI-ITMQLDRLSKREPTIVWSVLFLRDSTIASG-DSAGTVTFWDSIF----G--TLIQSHSCH--  244 (691)
T ss_pred             CceEEEEEcCCCceEEE-eeecccccccCCceEEEEEEEeecCcEEEe-cCCceEEEEcccC----c--chhhhhhhh--
Confidence            67799999987754443 33332221   1    12333444444444 3344489999876    2  222211110  


Q ss_pred             hhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccc
Q 046684          292 MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVP  355 (373)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~  355 (373)
                         ..+   ..+.++...+|.++. .|..+.+.-|...  +++-+|.....-....++.+..+.
T Consensus       245 ---~ad---Vl~Lav~~~~d~vfs-aGvd~~ii~~~~~--~~~~~wv~~~~r~~h~hdvrs~av  299 (691)
T KOG2048|consen  245 ---DAD---VLALAVADNEDRVFS-AGVDPKIIQYSLT--TNKSEWVINSRRDLHAHDVRSMAV  299 (691)
T ss_pred             ---hcc---eeEEEEcCCCCeEEE-ccCCCceEEEEec--CCccceeeeccccCCcccceeeee
Confidence               011   112333333455554 5677789999888  654478776555555555433333

>PRK04043 tolB translocation protein TolB; Provisional

Probab=91.88  E-value=11  Score=35.22  Aligned_cols=179  Identities=13%  Similarity=0.010  Sum_probs=93.2

Q ss_pred             CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      ...++.+|..+++-..+...... .....-+.+| .+.+........+++++|..+++++++...+.....+  ...-++
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p--~~SPDG  288 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNG--NFVEDD  288 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCcc--EECCCC
Confidence            46788888877665555332111 1111224444 4555444344678999999999988875544311111  111111


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE-EEEEEcC--
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITSA--  217 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg~--  217 (373)
                               .+|+......        ...+++++|..+++.+.+....         ... ....-+|+ +.+....  
T Consensus       289 ---------~~I~F~Sdr~--------g~~~Iy~~dl~~g~~~rlt~~g---------~~~-~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        289 ---------KRIVFVSDRL--------GYPNIFMKKLNSGSVEQVVFHG---------KNN-SSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             ---------CEEEEEECCC--------CCceEEEEECCCCCeEeCccCC---------CcC-ceECCCCCEEEEEEcCCC
Confidence                     5677665332        2357999999988876654321         011 12233444 3333211  


Q ss_pred             -----CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          218 -----RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       218 -----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                           ....|..+|+++++++.+ .... ..... ...-+|+..++....+....++.++.
T Consensus       342 ~~~~~~~~~I~v~d~~~g~~~~L-T~~~-~~~~p-~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        342 NEFGKNTFNLYLISTNSDYIRRL-TANG-VNQFP-RFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             cccCCCCcEEEEEECCCCCeEEC-CCCC-CcCCe-EECCCCCEEEEEEccCCcEEEEEEec
Confidence                 125799999999999888 3322 11122 23345654333333333334555544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.49  E-value=13  Score=35.23  Aligned_cols=192  Identities=11%  Similarity=0.074  Sum_probs=99.1

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCccc-c-eeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTR-Q-FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~-~-w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      +.+|...+.+..  ...+.+||...+ . -+.+..+....  .++++..          ++++++.|+.+          
T Consensus       212 s~d~~~l~s~s~--D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p----------~g~~i~Sgs~D----------  267 (456)
T KOG0266|consen  212 SPDGSYLLSGSD--DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSP----------DGNLLVSGSDD----------  267 (456)
T ss_pred             CCCCcEEEEecC--CceEEEeeccCCCeEEEEecCCCCce--EEEEecC----------CCCEEEEecCC----------
Confidence            445654444432  567888888333 2 23333333322  2222221          15677777665          


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEE--ECCEEEEEEcCCceEEEEEECCCCcEE---ecccCCCCCCC
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC--TRGMLYWITSARAYSVIGFDIESNTWR---ELSAPMADRLE  244 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~g~ly~~gg~~~~~i~~yd~~~~~w~---~~~~~~p~~~~  244 (373)
                      ..+.++|.++++=...-..       +.  ....++.  -+|.+.+.+ .....+..||+.+++..   .+ ........
T Consensus       268 ~tvriWd~~~~~~~~~l~~-------hs--~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~  336 (456)
T KOG0266|consen  268 GTVRIWDVRTGECVRKLKG-------HS--DGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLL-SGAENSAP  336 (456)
T ss_pred             CcEEEEeccCCeEEEeeec-------cC--CceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecc-cCCCCCCc
Confidence            5689999988543222111       11  1112222  346666664 55888999999999854   22 11111111


Q ss_pred             ceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE-ecCCEEEEEEcCCccE
Q 046684          245 FATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-AGNGAICLYREVGLGM  323 (373)
Q Consensus       245 ~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~  323 (373)
                      ...+....+..|++.+..+..+.+|++........|..   ..... .   +      .+..+ ..++...+.|.....+
T Consensus       337 ~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~---~~~~~-~---~------~~~~~~~~~~~~i~sg~~d~~v  403 (456)
T KOG0266|consen  337 VTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG---HSNLV-R---C------IFSPTLSTGGKLIYSGSEDGSV  403 (456)
T ss_pred             eeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc---cCCcc-e---e------EecccccCCCCeEEEEeCCceE
Confidence            12222234555666666666689999975111112222   11111 0   0      11222 3467777777777889


Q ss_pred             EEEEccccCC
Q 046684          324 IIWREDEDKR  333 (373)
Q Consensus       324 ~~yd~~~~~~  333 (373)
                      .++|+.  +.
T Consensus       404 ~~~~~~--s~  411 (456)
T KOG0266|consen  404 YVWDSS--SG  411 (456)
T ss_pred             EEEeCC--cc
Confidence            999999  65

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=91.48  E-value=3.3  Score=37.00  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=76.9

Q ss_pred             eEEEEEcCccc-----ceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc
Q 046684          107 LQLVLCNPFTR-----QFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA  181 (373)
Q Consensus       107 ~~~~v~np~t~-----~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~  181 (373)
                      ..+.+|+....     +.+.+......-.-.+++.+.           +++++..|.            .+.+|+...++
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~-----------~~lv~~~g~------------~l~v~~l~~~~  118 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN-----------GRLVVAVGN------------KLYVYDLDNSK  118 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET-----------TEEEEEETT------------EEEEEEEETTS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC-----------CEEEEeecC------------EEEEEEccCcc
Confidence            67888888774     444444333332223334343           665555443            57888888887


Q ss_pred             -eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEE
Q 046684          182 -WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIG  259 (373)
Q Consensus       182 -W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~g  259 (373)
                       +.......       ...........++.+++-.....-.++.|+.+..+...+ ......+....+..+ ++. .+++
T Consensus       119 ~l~~~~~~~-------~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v-a~d~~~~~v~~~~~l~d~~-~~i~  189 (321)
T PF03178_consen  119 TLLKKAFYD-------SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV-ARDYQPRWVTAAEFLVDED-TIIV  189 (321)
T ss_dssp             SEEEEEEE--------BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE-EEESS-BEEEEEEEE-SSS-EEEE
T ss_pred             cchhhheec-------ceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEE-EecCCCccEEEEEEecCCc-EEEE
Confidence             77776652       222344556677866655334455677888877778777 333334433444555 666 5666


Q ss_pred             eecCCceEEEEeec
Q 046684          260 GTCGGDACVWELSE  273 (373)
Q Consensus       260 g~~~~~~~i~~~~~  273 (373)
                      +.....+.++..+.
T Consensus       190 ~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  190 GDKDGNLFVLRYNP  203 (321)
T ss_dssp             EETTSEEEEEEE-S
T ss_pred             EcCCCeEEEEEECC
Confidence            66666667777663

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=91.34  E-value=10  Score=34.52  Aligned_cols=141  Identities=11%  Similarity=0.071  Sum_probs=73.0

Q ss_pred             CCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCC-----CC--CCCeEEEEEcCCCCC
Q 046684           72 SDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNV-----SR--TNPAVGIVMEGPAQH  144 (373)
Q Consensus        72 ~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~-----~~--~~~~~~~~~~~~~~~  144 (373)
                      .+.|..+...  .....-++..+|.+|.++.   ...+++++...+ -.++.+...     ..  .....+...      
T Consensus       189 ~~~Wt~l~~~--~~~~~DIi~~kGkfYAvD~---~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~------  256 (373)
T PLN03215        189 GNVLKALKQM--GYHFSDIIVHKGQTYALDS---IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECC------  256 (373)
T ss_pred             CCeeeEccCC--CceeeEEEEECCEEEEEcC---CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEEC------
Confidence            3678877532  2223458899999999865   466777774321 122221110     11  111122222      


Q ss_pred             CCCCceEEEEEeccCCCC-C-----C-CCcccceEEEE--ECCCCceeeecCCCccccccceeccCCce--------EEE
Q 046684          145 GPFPNFRIYVAGGMSDEP-R-----G-GATYESMVEMY--DSRHDAWQIIGSMPVEFAVRLTVWTPNES--------VCT  207 (373)
Q Consensus       145 ~~~~~~kl~~~gg~~~~~-~-----~-~~~~~~~~~~y--d~~~~~W~~~~~~p~~~~~~~~~~~~~~~--------~~~  207 (373)
                           ++++++....... .     . .......+++|  |.+.++|.++..+....   ..-....+.        ...
T Consensus       257 -----GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~a---LFlG~~~s~sv~a~e~pG~k  328 (373)
T PLN03215        257 -----GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNA---FVMATDTCFSVLAHEFYGCL  328 (373)
T ss_pred             -----CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeE---EEEECCccEEEecCCCCCcc
Confidence                 6788876532100 0     0 00112345555  77788999999886421   000001110        123


Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEec
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWREL  235 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~  235 (373)
                      ++++|+..   .....+||++.++-+.+
T Consensus       329 ~NcIYFtd---d~~~~v~~~~dg~~~~~  353 (373)
T PLN03215        329 PNSIYFTE---DTMPKVFKLDNGNGSSI  353 (373)
T ss_pred             CCEEEEEC---CCcceEEECCCCCccce
Confidence            58899883   44556899988875444

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=91.24  E-value=8.8  Score=32.92  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=58.2

Q ss_pred             EEEEEEcCCceEEEEEECCCCcEEecccCCCCCC--CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684          210 MLYWITSARAYSVIGFDIESNTWRELSAPMADRL--EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP  287 (373)
Q Consensus       210 ~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~--~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p  287 (373)
                      ..+++.....+.+-..|+.+-+-...   .+.+.  .....+..+|.|+..||.++. +..|++++  .+.    +..+.
T Consensus       162 ~p~Ivs~s~DktvKvWnl~~~~l~~~---~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~--~k~----lysl~  231 (315)
T KOG0279|consen  162 NPIIVSASWDKTVKVWNLRNCQLRTT---FIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNE--GKN----LYSLE  231 (315)
T ss_pred             CcEEEEccCCceEEEEccCCcchhhc---cccccccEEEEEECCCCCEEecCCCCce-EEEEEccC--Cce----eEecc
Confidence            45555445566777888877655433   22222  222334459999999876544 68999987  222    33333


Q ss_pred             hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ...-           -..++..-+...+.-.....|-++|.+  ++
T Consensus       232 a~~~-----------v~sl~fspnrywL~~at~~sIkIwdl~--~~  264 (315)
T KOG0279|consen  232 AFDI-----------VNSLCFSPNRYWLCAATATSIKIWDLE--SK  264 (315)
T ss_pred             CCCe-----------EeeEEecCCceeEeeccCCceEEEecc--ch
Confidence            2211           244445555555555555568888888  76

>PRK02889 tolB translocation protein TolB; Provisional

Probab=91.11  E-value=13  Score=34.75  Aligned_cols=144  Identities=8%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-EEEEEE-cCCceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWIT-SARAYSVIGFDIESNTWRELSAPMADRLEFAT  247 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~g-g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~  247 (373)
                      ..++++|..+++=+.+...+.        ........-+| ++++.. ......|+.+|..++..+.+ .......... 
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g--------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l-t~~~~~~~~~-  289 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKG--------SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL-TQSSGIDTEP-  289 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCC--------CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC-CCCCCCCcCe-
Confidence            568999998776444443321        01111122244 454432 22346788899887776666 2221111111 


Q ss_pred             EEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--ccEEE
Q 046684          248 LVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--LGMII  325 (373)
Q Consensus       248 ~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~  325 (373)
                      ...-+|+..++.........+|.++.  ++...+.+..-. ..          .....+...|..|++.....  ..+.+
T Consensus       290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~--~~g~~~~lt~~g-~~----------~~~~~~SpDG~~Ia~~s~~~g~~~I~v  356 (427)
T PRK02889        290 FFSPDGRSIYFTSDRGGAPQIYRMPA--SGGAAQRVTFTG-SY----------NTSPRISPDGKLLAYISRVGGAFKLYV  356 (427)
T ss_pred             EEcCCCCEEEEEecCCCCcEEEEEEC--CCCceEEEecCC-CC----------cCceEECCCCCEEEEEEccCCcEEEEE
Confidence            22335553333333333357888875  445555543111 00          00234444566776655332  36899


Q ss_pred             EEccccCCcccEEEe
Q 046684          326 WREDEDKRKWEWVWV  340 (373)
Q Consensus       326 yd~~~~~~~~~W~~~  340 (373)
                      +|++  ++  +.+.+
T Consensus       357 ~d~~--~g--~~~~l  367 (427)
T PRK02889        357 QDLA--TG--QVTAL  367 (427)
T ss_pred             EECC--CC--CeEEc
Confidence            9998  77  65544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=91.06  E-value=13  Score=34.50  Aligned_cols=155  Identities=8%  Similarity=0.030  Sum_probs=76.6

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      -..+++.||++...++...++.-|..-+..++-.....-...       ..++.      +|-.++..-           
T Consensus       231 PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R-------~~nsD------GkrIvFq~~-----------  286 (668)
T COG4946         231 PMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPR-------NANSD------GKRIVFQNA-----------  286 (668)
T ss_pred             ceEEcceEEEEecccCccceEEeccCCchhhhcCCchhcccc-------ccCCC------CcEEEEecC-----------
Confidence            445677788877666667777777776655443322211110       11111      443333211           


Q ss_pred             ceEEEEECCCCceeeecCC-Cccccccceec-----cCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCC
Q 046684          170 SMVEMYDSRHDAWQIIGSM-PVEFAVRLTVW-----TPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL  243 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~-p~~~~~~~~~~-----~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~  243 (373)
                      .+++.||+++++-+++.-- |.....-....     +-.--+..+|.++.+.  .......+++-.+---++  +-+...
T Consensus       287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V--SRGkaFi~~~~~~~~iqv--~~~~~V  362 (668)
T COG4946         287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV--SRGKAFIMRPWDGYSIQV--GKKGGV  362 (668)
T ss_pred             CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE--ecCcEEEECCCCCeeEEc--CCCCce
Confidence            2589999999887766432 32100000000     0011245677777664  234455555443322222  222221


Q ss_pred             CceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          244 EFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       244 ~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      . ..-...+++-.++|..++..+.||+.+.
T Consensus       363 r-Y~r~~~~~e~~vigt~dgD~l~iyd~~~  391 (668)
T COG4946         363 R-YRRIQVDPEGDVIGTNDGDKLGIYDKDG  391 (668)
T ss_pred             E-EEEEccCCcceEEeccCCceEEEEecCC
Confidence            2 2223334556677777777789999865

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.90  E-value=14  Score=34.44  Aligned_cols=144  Identities=14%  Similarity=0.108  Sum_probs=78.4

Q ss_pred             cceEEEEECCCC-----ceeeecCCCccccccceeccCCceEEECCEEEEEEc--CCceEEEEEECCCCc---EEecccC
Q 046684          169 ESMVEMYDSRHD-----AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS--ARAYSVIGFDIESNT---WRELSAP  238 (373)
Q Consensus       169 ~~~~~~yd~~~~-----~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg--~~~~~i~~yd~~~~~---w~~~~~~  238 (373)
                      ...+++.+...+     .|+.+..--       .. ....+...++.+|+...  .....|+++++.+..   |..+-.+
T Consensus       251 ~s~v~~~d~~~~~~~~~~~~~l~~~~-------~~-~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~  322 (414)
T PF02897_consen  251 ESEVYLLDLDDGGSPDAKPKLLSPRE-------DG-VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP  322 (414)
T ss_dssp             EEEEEEEECCCTTTSS-SEEEEEESS-------SS--EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred             CCeEEEEeccccCCCcCCcEEEeCCC-------Cc-eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence            478899999875     688775421       00 11123345889999873  335789999998765   6643033


Q ss_pred             CCCCCCceeEEEECCEEEEEEeecCCc-eEEEEeecCCCCCCeEEEEe-echhhhhhhcCCCCCCCceEEE--ecCCEEE
Q 046684          239 MADRLEFATLVSRNQKLTLIGGTCGGD-ACVWELSEGGDDDIWCLIEK-VPIEMGMRLSGGKASWGGTRCA--AGNGAIC  314 (373)
Q Consensus       239 ~p~~~~~~~~~~~~g~l~~~gg~~~~~-~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~~~~~~~~~~~~--~~~~~i~  314 (373)
                      ......-..+...++.|++..-.+... +.++++.     ..|..... +|....           .....  ..++.++
T Consensus       323 ~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-----~~~~~~~~~~p~~g~-----------v~~~~~~~~~~~~~  386 (414)
T PF02897_consen  323 EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-----DGKESREIPLPEAGS-----------VSGVSGDFDSDELR  386 (414)
T ss_dssp             -SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT------TEEEEEEESSSSSE-----------EEEEES-TT-SEEE
T ss_pred             CCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-----CCcEEeeecCCcceE-----------EeccCCCCCCCEEE
Confidence            323223345566788888876554443 5555553     14554433 332210           01111  1245666


Q ss_pred             EEE-cC--CccEEEEEccccCCcccEEEe
Q 046684          315 LYR-EV--GLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       315 ~~~-~~--~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      +.- +.  ...++.||++  ++  +.+.+
T Consensus       387 ~~~ss~~~P~~~y~~d~~--t~--~~~~~  411 (414)
T PF02897_consen  387 FSYSSFTTPPTVYRYDLA--TG--ELTLL  411 (414)
T ss_dssp             EEEEETTEEEEEEEEETT--TT--CEEEE
T ss_pred             EEEeCCCCCCEEEEEECC--CC--CEEEE
Confidence            543 22  2469999999  98  66544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.68  E-value=4.4  Score=39.08  Aligned_cols=119  Identities=12%  Similarity=0.124  Sum_probs=65.4

Q ss_pred             ceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCCC--------CCceeEEEECCEEEEEEeecCCceEEEEee
Q 046684          203 ESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMADR--------LEFATLVSRNQKLTLIGGTCGGDACVWELS  272 (373)
Q Consensus       203 ~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~--------~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~  272 (373)
                      +.++.+|.+|+..  ....+.++|.+++  .|+.- ...+..        ....+++..++++|+....  .  .++-++
T Consensus        64 tPvv~~g~vyv~s--~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--g--~l~ALD  136 (527)
T TIGR03075        64 QPLVVDGVMYVTT--SYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--A--RLVALD  136 (527)
T ss_pred             CCEEECCEEEEEC--CCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEECCEEEEEcCC--C--EEEEEE
Confidence            3477899999974  3457999999875  58754 222111        1122345667888775422  2  344444


Q ss_pred             cCCCCCCeEEEEe-echhhhhhhcCCCCCCCceEEEecCCEEEEEEc-----CCccEEEEEccccCCcccEEEe
Q 046684          273 EGGDDDIWCLIEK-VPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE-----VGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       273 ~~~~~~~W~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      ....+..|+.-.. .......          ...-+..++.||+-..     ..+.+..||.+  +++..|+.-
T Consensus       137 a~TGk~~W~~~~~~~~~~~~~----------tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~--TG~~lW~~~  198 (527)
T TIGR03075       137 AKTGKVVWSKKNGDYKAGYTI----------TAAPLVVKGKVITGISGGEFGVRGYVTAYDAK--TGKLVWRRY  198 (527)
T ss_pred             CCCCCEEeecccccccccccc----------cCCcEEECCEEEEeecccccCCCcEEEEEECC--CCceeEecc
Confidence            3113445764321 1100000          1222334777777532     23579999999  998788854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=90.63  E-value=0.14  Score=46.24  Aligned_cols=40  Identities=30%  Similarity=0.483  Sum_probs=36.0

Q ss_pred             cchHHHHHHHHhcCChhhHHHhhcccccchhccccccchh
Q 046684            4 NLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS   43 (373)
Q Consensus         4 ~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~   43 (373)
                      .||.||+.+||+.|..++++|++.+|+.|+.+..|-.-++
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q  113 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQ  113 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccce
Confidence            5899999999999999999999999999999997765443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.52  E-value=19  Score=35.48  Aligned_cols=159  Identities=10%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEE-EEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVG-IVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY  168 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~  168 (373)
                      .-+.+|.+.+.|+.  ..++.+||...+-....  ........+.. +...          +++++....+         
T Consensus       357 ~YSpDgq~iaTG~e--DgKVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~----------g~~llssSLD---------  413 (893)
T KOG0291|consen  357 AYSPDGQLIATGAE--DGKVKVWNTQSGFCFVT--FTEHTSGVTAVQFTAR----------GNVLLSSSLD---------  413 (893)
T ss_pred             EECCCCcEEEeccC--CCcEEEEeccCceEEEE--eccCCCceEEEEEEec----------CCEEEEeecC---------
Confidence            44668888887775  56789999887654321  11111111111 1111          3444433333         


Q ss_pred             cceEEEEECCCC-ceeeecCCCccccccceeccCCceEEEC--CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc
Q 046684          169 ESMVEMYDSRHD-AWQIIGSMPVEFAVRLTVWTPNESVCTR--GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF  245 (373)
Q Consensus       169 ~~~~~~yd~~~~-~W~~~~~~p~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~  245 (373)
                       ..|-.+|.... ..|.... |        .+...+.+.++  |.+.+.|....-.|...+.++++--.+ ..-...-..
T Consensus       414 -GtVRAwDlkRYrNfRTft~-P--------~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-LsGHEgPVs  482 (893)
T KOG0291|consen  414 -GTVRAWDLKRYRNFRTFTS-P--------EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-LSGHEGPVS  482 (893)
T ss_pred             -CeEEeeeecccceeeeecC-C--------CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh-hcCCCCcce
Confidence             24566666432 2343322 1        11233445566  999999888888999999999987665 222111111


Q ss_pred             eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684          246 ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI  288 (373)
Q Consensus       246 ~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~  288 (373)
                      .-.....|.+.+.+. -+..+.+|+.-     .+|.++.+++.
T Consensus       483 ~l~f~~~~~~LaS~S-WDkTVRiW~if-----~s~~~vEtl~i  519 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGS-WDKTVRIWDIF-----SSSGTVETLEI  519 (893)
T ss_pred             eeEEccccCeEEecc-ccceEEEEEee-----ccCceeeeEee
Confidence            112333455444443 34447999986     56777766553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=90.48  E-value=7.9  Score=35.30  Aligned_cols=122  Identities=12%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             ceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCe
Q 046684          203 ESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIW  280 (373)
Q Consensus       203 ~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W  280 (373)
                      +++++ +|.|+.. |.....+-.||+.+..  .+ ..+|.+..-..... .++.-|++.+.++..+.+|++..    .+ 
T Consensus       352 s~~fHpDgLifgt-gt~d~~vkiwdlks~~--~~-a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK----l~-  422 (506)
T KOG0289|consen  352 SAAFHPDGLIFGT-GTPDGVVKIWDLKSQT--NV-AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK----LK-  422 (506)
T ss_pred             EeeEcCCceEEec-cCCCceEEEEEcCCcc--cc-ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh----hc-
Confidence            33444 5677666 5667788899999877  34 45555433333232 34444666556666689999964    22 


Q ss_pred             EEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccC
Q 046684          281 CLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLT  346 (373)
Q Consensus       281 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~  346 (373)
                       .+..++.+....        .....+..-|..+.++|.+-.|+.|+..  ++  .|+.+...+.-
T Consensus       423 -n~kt~~l~~~~~--------v~s~~fD~SGt~L~~~g~~l~Vy~~~k~--~k--~W~~~~~~~~~  475 (506)
T KOG0289|consen  423 -NFKTIQLDEKKE--------VNSLSFDQSGTYLGIAGSDLQVYICKKK--TK--SWTEIKELADH  475 (506)
T ss_pred             -ccceeecccccc--------ceeEEEcCCCCeEEeecceeEEEEEecc--cc--cceeeehhhhc
Confidence             333333322110        0133334445566666666667788888  89  99998765533

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=90.35  E-value=17  Score=34.73  Aligned_cols=172  Identities=10%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEEC-CEEEEEEcCCceEEEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTR-GMLYWITSARAYSVIGFD  226 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~-g~ly~~gg~~~~~i~~yd  226 (373)
                      ++||+....           ..++.+|.++++  |+.-...+....  .........++.+ +++|+.  .....+.++|
T Consensus        62 g~vy~~~~~-----------g~l~AlD~~tG~~~W~~~~~~~~~~~--~~~~~~~g~~~~~~~~V~v~--~~~g~v~AlD  126 (488)
T cd00216          62 GDMYFTTSH-----------SALFALDAATGKVLWRYDPKLPADRG--CCDVVNRGVAYWDPRKVFFG--TFDGRLVALD  126 (488)
T ss_pred             CEEEEeCCC-----------CcEEEEECCCChhhceeCCCCCcccc--ccccccCCcEEccCCeEEEe--cCCCeEEEEE
Confidence            788875422           357888988765  876433210000  0111122335556 888876  3467899999


Q ss_pred             CCCC--cEEecccCCCC---CCCceeEEEECCEEEEEEeecC-----CceEEEEeecCCCCCCeEEEEeechhhhh-hhc
Q 046684          227 IESN--TWRELSAPMAD---RLEFATLVSRNQKLTLIGGTCG-----GDACVWELSEGGDDDIWCLIEKVPIEMGM-RLS  295 (373)
Q Consensus       227 ~~~~--~w~~~~~~~p~---~~~~~~~~~~~g~l~~~gg~~~-----~~~~i~~~~~~~~~~~W~~v~~~p~~~~~-~~~  295 (373)
                      .+++  .|+.- ...+.   .......+..++.+|+......     ..-.++.++....+..|+.-...+..... ...
T Consensus       127 ~~TG~~~W~~~-~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~  205 (488)
T cd00216         127 AETGKQVWKFG-NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWG  205 (488)
T ss_pred             CCCCCEeeeec-CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCC
Confidence            9876  47754 22211   0112233445666665322111     11234444441144568654322211100 000


Q ss_pred             --------CCCCCCCceEEEecCCEEEEEEcC-----------------CccEEEEEccccCCcccEEE
Q 046684          296 --------GGKASWGGTRCAAGNGAICLYREV-----------------GLGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       296 --------~~~~~~~~~~~~~~~~~i~~~~~~-----------------~~~~~~yd~~~~~~~~~W~~  339 (373)
                              .+-.......+...++.||+-.+.                 .+.++.+|.+  +++..|+.
T Consensus       206 ~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~--tG~~~W~~  272 (488)
T cd00216         206 PDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD--TGKVKWFY  272 (488)
T ss_pred             CCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC--CCCEEEEe
Confidence                    000001112222246777775422                 1369999999  99878885

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.34  E-value=13  Score=33.27  Aligned_cols=66  Identities=9%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             CCEEEEEEeecCC--c----eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC--EEEEEEcCCccE
Q 046684          252 NQKLTLIGGTCGG--D----ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG--AICLYREVGLGM  323 (373)
Q Consensus       252 ~g~l~~~gg~~~~--~----~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~  323 (373)
                      .++||++......  +    -+||.++.    .+=+.+.+++.+.-.          ....+..++  .||.....+..+
T Consensus       249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~----~t~krv~Ri~l~~~~----------~Si~Vsqd~~P~L~~~~~~~~~l  314 (342)
T PF06433_consen  249 SGRLYVLMHQGGEGSHKDPGTEVWVYDL----KTHKRVARIPLEHPI----------DSIAVSQDDKPLLYALSAGDGTL  314 (342)
T ss_dssp             TTEEEEEEEE--TT-TTS-EEEEEEEET----TTTEEEEEEEEEEEE----------SEEEEESSSS-EEEEEETTTTEE
T ss_pred             cCeEEEEecCCCCCCccCCceEEEEEEC----CCCeEEEEEeCCCcc----------ceEEEccCCCcEEEEEcCCCCeE
Confidence            6799988643221  1    78999987    544677776654211          123333343  566566666789


Q ss_pred             EEEEccccCC
Q 046684          324 IIWREDEDKR  333 (373)
Q Consensus       324 ~~yd~~~~~~  333 (373)
                      .+||..  ++
T Consensus       315 ~v~D~~--tG  322 (342)
T PF06433_consen  315 DVYDAA--TG  322 (342)
T ss_dssp             EEEETT--T-
T ss_pred             EEEeCc--CC
Confidence            999999  88

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=90.28  E-value=13  Score=33.88  Aligned_cols=178  Identities=16%  Similarity=0.145  Sum_probs=91.5

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCC---Cce
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRH---DAW  182 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~---~~W  182 (373)
                      ...+..||..|+.-+.+-+....-...+++-+-+          +.=++.|+.+          ..+..+|...   +.|
T Consensus       290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD----------g~~~V~Gs~d----------r~i~~wdlDgn~~~~W  349 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD----------GFRFVTGSPD----------RTIIMWDLDGNILGNW  349 (519)
T ss_pred             hHheeeccCCcchhhhhcccCcCCCcceeEEccC----------CceeEecCCC----------CcEEEecCCcchhhcc
Confidence            3457888999888766433222222222222222          4446666543          4566777655   468


Q ss_pred             eeecCCCccccccceeccCCceEEECCE-EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEee
Q 046684          183 QIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGT  261 (373)
Q Consensus       183 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~  261 (373)
                      +-+...          ....-++..+|+ ++.++  ....+..|+.++..=+.+ .....+... ....-+|++.++.-.
T Consensus       350 ~gvr~~----------~v~dlait~Dgk~vl~v~--~d~~i~l~~~e~~~dr~l-ise~~~its-~~iS~d~k~~LvnL~  415 (519)
T KOG0293|consen  350 EGVRDP----------KVHDLAITYDGKYVLLVT--VDKKIRLYNREARVDRGL-ISEEQPITS-FSISKDGKLALVNLQ  415 (519)
T ss_pred             cccccc----------eeEEEEEcCCCcEEEEEe--cccceeeechhhhhhhcc-ccccCceeE-EEEcCCCcEEEEEcc
Confidence            766542          011111334554 55553  456677888776544422 122222211 123347888887754


Q ss_pred             cCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcCCccEEEEEccccCC
Q 046684          262 CGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       262 ~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      + ..+..|++++      |..+..--.-.-..       +-.-.|++.++ ...+.|..+.++++++..  ++
T Consensus       416 ~-qei~LWDl~e------~~lv~kY~Ghkq~~-------fiIrSCFgg~~~~fiaSGSED~kvyIWhr~--sg  472 (519)
T KOG0293|consen  416 D-QEIHLWDLEE------NKLVRKYFGHKQGH-------FIIRSCFGGGNDKFIASGSEDSKVYIWHRI--SG  472 (519)
T ss_pred             c-CeeEEeecch------hhHHHHhhcccccc-------eEEEeccCCCCcceEEecCCCceEEEEEcc--CC
Confidence            4 3478999965      44443211100000       11234555544 555555666789999988  77

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=90.15  E-value=8.5  Score=32.38  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEE-EEee
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCL-IEKV  286 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~-v~~~  286 (373)
                      .|.+.+.||  ...++..|+++++.+.. .. ....+-+.++.-+..=-++.|.++..+.+|+.++    .+=.+ +..-
T Consensus       126 enSi~~AgG--D~~~y~~dlE~G~i~r~-~r-GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt----~k~v~~ie~y  197 (325)
T KOG0649|consen  126 ENSILFAGG--DGVIYQVDLEDGRIQRE-YR-GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT----QKHVSMIEPY  197 (325)
T ss_pred             CCcEEEecC--CeEEEEEEecCCEEEEE-Ec-CCcceeeeeeecccCcceeecCCCccEEEEeccc----cceeEEeccc
Confidence            478888864  47899999999998876 21 1222223333212222233344444579999976    43332 2222


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ..+...  .++.   .....+...+.=+++.|...++-.+++.  +.
T Consensus       198 k~~~~l--Rp~~---g~wigala~~edWlvCGgGp~lslwhLr--ss  237 (325)
T KOG0649|consen  198 KNPNLL--RPDW---GKWIGALAVNEDWLVCGGGPKLSLWHLR--SS  237 (325)
T ss_pred             cChhhc--Cccc---CceeEEEeccCceEEecCCCceeEEecc--CC
Confidence            222211  1111   1222233333333333444578889998  66

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.15  E-value=6.5  Score=39.64  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=24.2

Q ss_pred             CceEEECCEEEEEEcCCceEEEEEECCCC--cEEec
Q 046684          202 NESVCTRGMLYWITSARAYSVIGFDIESN--TWREL  235 (373)
Q Consensus       202 ~~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~  235 (373)
                      .+.++++|.+|+..  ..+.++++|.+++  .|+.-
T Consensus       188 ~TPlvvgg~lYv~t--~~~~V~ALDa~TGk~lW~~d  221 (764)
T TIGR03074       188 ATPLKVGDTLYLCT--PHNKVIALDAATGKEKWKFD  221 (764)
T ss_pred             cCCEEECCEEEEEC--CCCeEEEEECCCCcEEEEEc
Confidence            34578899999984  3468999999865  58754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=90.04  E-value=16  Score=33.92  Aligned_cols=70  Identities=14%  Similarity=0.039  Sum_probs=39.9

Q ss_pred             ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684          207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      .++.-.++|......+.+||..+.+-..+..  +.......-+.-+|+-.+++...   .++|..+-  +++.=+.+
T Consensus       369 ~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr---~el~vidi--dngnv~~i  438 (668)
T COG4946         369 VDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDR---FELWVIDI--DNGNVRLI  438 (668)
T ss_pred             cCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCc---eEEEEEEe--cCCCeeEe
Confidence            4455666765666789999999998887732  33333333333456655544222   45666655  44443333

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.01  E-value=3.1  Score=36.26  Aligned_cols=101  Identities=10%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeec-----CCceEEEEeecCCCCCCeEEEEe-----ec
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTC-----GGDACVWELSEGGDDDIWCLIEK-----VP  287 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~-----~~~~~i~~~~~~~~~~~W~~v~~-----~p  287 (373)
                      -..+-.||+++.+|..+...  ....-..+.-. +++|++.|...     ...+..|+++.    .+|+.+..     +|
T Consensus        15 C~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~----~~w~~~~~~~s~~ip   88 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN----QTWSSLGGGSSNSIP   88 (281)
T ss_pred             CCEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC----CeeeecCCcccccCC
Confidence            45788999999999988322  11112233333 67788777532     12277888866    89988766     23


Q ss_pred             hhhhhhhcCCCCCCCceEEE-ecCCEEEEEEc---CCccEEEEEccccCCcccEEEecc
Q 046684          288 IEMGMRLSGGKASWGGTRCA-AGNGAICLYRE---VGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~---~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      .+..           ..... ..++.+++.|.   ...-+..||=.      +|+.+..
T Consensus        89 gpv~-----------a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs------~W~~i~~  130 (281)
T PF12768_consen   89 GPVT-----------ALTFISNDGSNFWVAGRSANGSTFLMKYDGS------SWSSIGS  130 (281)
T ss_pred             CcEE-----------EEEeeccCCceEEEeceecCCCceEEEEcCC------ceEeccc
Confidence            3221           11111 23557777664   22346666544      9998876

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=89.79  E-value=12  Score=32.10  Aligned_cols=158  Identities=14%  Similarity=0.155  Sum_probs=87.1

Q ss_pred             CceeEEeeCcEEEEeeCCCCceEEEEEcCccccee---ccCCCCCC-------CCCCeEEEEEcCCCCCCCCCceEEEEE
Q 046684           86 PVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFR---YLPLLNVS-------RTNPAVGIVMEGPAQHGPFPNFRIYVA  155 (373)
Q Consensus        86 ~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~---~lp~~~~~-------~~~~~~~~~~~~~~~~~~~~~~kl~~~  155 (373)
                      .+.+.++.||-+|..-.  ....+..||..+++-.   .||.....       .....+-+..|.         .-|++|
T Consensus        70 ~GtG~vVYngslYY~~~--~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE---------~GLWvI  138 (250)
T PF02191_consen   70 QGTGHVVYNGSLYYNKY--NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE---------NGLWVI  138 (250)
T ss_pred             ccCCeEEECCcEEEEec--CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC---------CCEEEE
Confidence            34445667887777544  2688999999998765   35433211       000111111111         457777


Q ss_pred             eccCCCCCCCCcccceEEEEECCC----CceeeecCCCccccccceeccCCceEEECCEEEEEEcCC---ceEEEEEECC
Q 046684          156 GGMSDEPRGGATYESMVEMYDSRH----DAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR---AYSVIGFDIE  228 (373)
Q Consensus       156 gg~~~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~~~i~~yd~~  228 (373)
                      -...     +......+-..|+.+    .+|..--.          .+....+.++-|.||++....   ..-..+||+.
T Consensus       139 Yat~-----~~~g~ivvskld~~tL~v~~tw~T~~~----------k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~  203 (250)
T PF02191_consen  139 YATE-----DNNGNIVVSKLDPETLSVEQTWNTSYP----------KRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTY  203 (250)
T ss_pred             EecC-----CCCCcEEEEeeCcccCceEEEEEeccC----------chhhcceeeEeeEEEEEEECCCCCcEEEEEEECC
Confidence            5443     222223344445443    45764221          122233466789999997432   4567899999


Q ss_pred             CCcEEecccCCCCCCCceeEEEE---CCEEEEEEeecCCceEEEEee
Q 046684          229 SNTWRELSAPMADRLEFATLVSR---NQKLTLIGGTCGGDACVWELS  272 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~~~~~~~~~---~g~l~~~gg~~~~~~~i~~~~  272 (373)
                      +++=..+..+++........+..   +.+||+..   +..+..|++.
T Consensus       204 t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd---~G~~v~Y~v~  247 (250)
T PF02191_consen  204 TGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD---NGYQVTYDVR  247 (250)
T ss_pred             CCceeceeeeeccccCceEeeeECCCCCeEEEEE---CCeEEEEEEE
Confidence            98877665555555444444443   56788764   2234566554

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.67  E-value=14  Score=34.90  Aligned_cols=147  Identities=11%  Similarity=0.034  Sum_probs=80.1

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      +..+.+-+..|    ..+++||-.+++-..+-...  ....+......         ++..+++|-.+          ..
T Consensus       186 ss~n~laValg----~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~---------~G~~LavG~~~----------g~  240 (484)
T KOG0305|consen  186 SSANVLAVALG----QSVYLWSASSGSVTELCSFG--EELVTSVKWSP---------DGSHLAVGTSD----------GT  240 (484)
T ss_pred             ccCCeEEEEec----ceEEEEecCCCceEEeEecC--CCceEEEEECC---------CCCEEEEeecC----------Ce
Confidence            34555555554    67999999999876665554  33333333321         16778887554          46


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR  251 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~  251 (373)
                      +++||.++.+  .+..+.      ........+...++.+... |.....|..+|....+=..- .-......-+++.-.
T Consensus       241 v~iwD~~~~k--~~~~~~------~~h~~rvg~laW~~~~lss-Gsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws  310 (484)
T KOG0305|consen  241 VQIWDVKEQK--KTRTLR------GSHASRVGSLAWNSSVLSS-GSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWS  310 (484)
T ss_pred             EEEEehhhcc--cccccc------CCcCceeEEEeccCceEEE-ecCCCcEEEEEEecchhhhh-hhhcccceeeeeEEC
Confidence            8999986644  122221      0011112233455666666 45567788888765432111 111122334455555


Q ss_pred             CCEEEEEEeecCCceEEEEeec
Q 046684          252 NQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       252 ~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      .+.-+++.|..++.+.||+...
T Consensus       311 ~d~~~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  311 PDGNQLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             CCCCeeccCCCccceEeccCCC
Confidence            5555666665556678998743

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=89.42  E-value=20  Score=34.14  Aligned_cols=100  Identities=14%  Similarity=0.016  Sum_probs=61.0

Q ss_pred             CeeEEEEeCCCCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceec-------cCCCCCCCCCCe
Q 046684           62 GLCCYVHNPVSDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRY-------LPLLNVSRTNPA  133 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~-------lp~~~~~~~~~~  133 (373)
                      +.+++.+|...++|... ......-....+..++|+|.+++.   ...+..|||.+++-..       ++..|..-..++
T Consensus       154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~---~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~s  230 (703)
T KOG2321|consen  154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE---DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPS  230 (703)
T ss_pred             CcceEEEEccccccccccccccccceeeeecCccceEEeccc---CceEEEecchhhhhheeeecccccCCCccccccCc
Confidence            36888999999988654 233234455668888999988775   5789999999987432       223333333333


Q ss_pred             EEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc
Q 046684          134 VGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA  181 (373)
Q Consensus       134 ~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~  181 (373)
                      +..+....       ++-=+.+|-.          ...+++||.++.+
T Consensus       231 vTal~F~d-------~gL~~aVGts----------~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  231 VTALKFRD-------DGLHVAVGTS----------TGSVLIYDLRASK  261 (703)
T ss_pred             ceEEEecC-------CceeEEeecc----------CCcEEEEEcccCC
Confidence            44433211       0222333422          3468999998765

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=89.11  E-value=14  Score=31.93  Aligned_cols=53  Identities=21%  Similarity=0.328  Sum_probs=29.3

Q ss_pred             eEEEEEECCCCcEEecccC-CCCCCCceeEEEECCEEEEEEeecCCc----eEEEEee
Q 046684          220 YSVIGFDIESNTWRELSAP-MADRLEFATLVSRNQKLTLIGGTCGGD----ACVWELS  272 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~-~p~~~~~~~~~~~~g~l~~~gg~~~~~----~~i~~~~  272 (373)
                      ..|+-+|++-+..+....| +......+...+-++.+|++||..-..    -.+|.++
T Consensus       131 P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlk  188 (337)
T PF03089_consen  131 PQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLK  188 (337)
T ss_pred             CeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEE
Confidence            4555666666555443111 122334445566689999999964322    3455554

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PRK04043 tolB translocation protein TolB; Provisional

Probab=89.06  E-value=20  Score=33.56  Aligned_cols=188  Identities=10%  Similarity=0.074  Sum_probs=100.4

Q ss_pred             EEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEE
Q 046684           97 LLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD  176 (373)
Q Consensus        97 l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd  176 (373)
                      +++..-.....+++++|..|++-+.+...+....  ... . .+.+       .++++.....        ...+++++|
T Consensus       203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~--~~~-~-SPDG-------~~la~~~~~~--------g~~~Iy~~d  263 (419)
T PRK04043        203 FYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV--VSD-V-SKDG-------SKLLLTMAPK--------GQPDIYLYD  263 (419)
T ss_pred             EEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE--eeE-E-CCCC-------CEEEEEEccC--------CCcEEEEEE
Confidence            5543332235689999999998777754322111  111 1 1111       4555543222        146899999


Q ss_pred             CCCCceeeecCCCccccccceeccCCceEEECC-EEEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCE
Q 046684          177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQK  254 (373)
Q Consensus       177 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~  254 (373)
                      ..++.++.+...+.        ........-+| .||+.... ....|+.+|+.+++.+.+ .....  ... ...-+|+
T Consensus       264 l~~g~~~~LT~~~~--------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-t~~g~--~~~-~~SPDG~  331 (419)
T PRK04043        264 TNTKTLTQITNYPG--------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-VFHGK--NNS-SVSTYKN  331 (419)
T ss_pred             CCCCcEEEcccCCC--------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC-ccCCC--cCc-eECCCCC
Confidence            99999988865531        01111122344 57776422 235799999999988776 22211  112 2333555


Q ss_pred             -EEEEEeecC-----CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc--CCccEEEE
Q 046684          255 -LTLIGGTCG-----GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE--VGLGMIIW  326 (373)
Q Consensus       255 -l~~~gg~~~-----~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~y  326 (373)
                       |.++.....     ...++|.++.  ++..++.+..-..   .         ........|..|++...  ....+..+
T Consensus       332 ~Ia~~~~~~~~~~~~~~~~I~v~d~--~~g~~~~LT~~~~---~---------~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        332 YIVYSSRETNNEFGKNTFNLYLIST--NSDYIRRLTANGV---N---------QFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             EEEEEEcCCCcccCCCCcEEEEEEC--CCCCeEECCCCCC---c---------CCeEECCCCCEEEEEEccCCcEEEEEE
Confidence             444432221     1146776665  5566666654211   1         02445555666766653  33458888


Q ss_pred             Ecc
Q 046684          327 RED  329 (373)
Q Consensus       327 d~~  329 (373)
                      +++
T Consensus       398 ~l~  400 (419)
T PRK04043        398 RLN  400 (419)
T ss_pred             ecC
Confidence            888

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=89.02  E-value=34  Score=36.28  Aligned_cols=212  Identities=11%  Similarity=0.009  Sum_probs=105.1

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCC-------C-------CCCCCeEEEEEcCCCCCCCCCceEEEEEecc
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN-------V-------SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGM  158 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~  158 (373)
                      -++.||+....  .+.+.++|+.++.-+.+..-.       .       ....+.-..+. +  .     ++.+|+....
T Consensus       634 ~gn~LYVaDt~--n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p--~-----~g~LyVad~~  703 (1057)
T PLN02919        634 KKNLLYVADTE--NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-P--V-----NEKVYIAMAG  703 (1057)
T ss_pred             CCCEEEEEeCC--CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-c--C-----CCeEEEEECC
Confidence            46788987753  467888999887765543210       0       00111112222 1  0     1678876432


Q ss_pred             CCCCCCCCcccceEEEEECCCCceeeecCCCcc------ccccceeccCCceEEE-CC-EEEEEEcCCceEEEEEECCCC
Q 046684          159 SDEPRGGATYESMVEMYDSRHDAWQIIGSMPVE------FAVRLTVWTPNESVCT-RG-MLYWITSARAYSVIGFDIESN  230 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~------~~~~~~~~~~~~~~~~-~g-~ly~~gg~~~~~i~~yd~~~~  230 (373)
                      +          ..+++||..++..+....-...      ............+++. +| .||+.. ...+.|.+||++++
T Consensus       704 ~----------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD-s~n~~Irv~D~~tg  772 (1057)
T PLN02919        704 Q----------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD-SESSSIRALDLKTG  772 (1057)
T ss_pred             C----------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE-CCCCeEEEEECCCC
Confidence            2          4578888876655433211000      0000001111223332 34 588884 45678999999876


Q ss_pred             cEEecccCC---CCC---------------CCc-eeEE-EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684          231 TWRELSAPM---ADR---------------LEF-ATLV-SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       231 ~w~~~~~~~---p~~---------------~~~-~~~~-~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~  290 (373)
                      ....+..-.   +..               ... .+++ .-+|.||+.... +..+.+|+++.    .....+.......
T Consensus       773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-N~rIrviD~~t----g~v~tiaG~G~~G  847 (1057)
T PLN02919        773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-NHKIKKLDPAT----KRVTTLAGTGKAG  847 (1057)
T ss_pred             cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-CCEEEEEECCC----CeEEEEeccCCcC
Confidence            543221000   000               001 1222 346788888643 33477887754    5444443221110


Q ss_pred             hhh--hcCCCCCCCceEEEe-cCCEEEEEEcCCccEEEEEccccCC
Q 046684          291 GMR--LSGGKASWGGTRCAA-GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       291 ~~~--~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +..  .... ....+..++. .++.||+.+...+.|.++|++  ++
T Consensus       848 ~~dG~~~~a-~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~--~~  890 (1057)
T PLN02919        848 FKDGKALKA-QLSEPAGLALGENGRLFVADTNNSLIRYLDLN--KG  890 (1057)
T ss_pred             CCCCccccc-ccCCceEEEEeCCCCEEEEECCCCEEEEEECC--CC
Confidence            000  0000 0112344333 467899999888899999999  77

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=88.58  E-value=8.8  Score=28.96  Aligned_cols=81  Identities=14%  Similarity=0.105  Sum_probs=52.3

Q ss_pred             eeCcEEEEeeCC--CCceEEEEEcCcccceeccCCC---CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684           92 SIGSFLLLRPIN--STILQLVLCNPFTRQFRYLPLL---NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA  166 (373)
Q Consensus        92 ~~~g~l~~~gg~--~~~~~~~v~np~t~~w~~lp~~---~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~  166 (373)
                      ..||.+|-+...  .....+..||..+.+|+.++.+   ........+.-+.           ++|-++.....    ..
T Consensus         3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~-----------G~L~~v~~~~~----~~   67 (129)
T PF08268_consen    3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYK-----------GKLALVSYNDQ----GE   67 (129)
T ss_pred             EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeC-----------CeEEEEEecCC----CC
Confidence            468888887664  3456789999999999887543   2333444555555           88888764430    11


Q ss_pred             cccceEEEE-ECCCCceeeecC
Q 046684          167 TYESMVEMY-DSRHDAWQIIGS  187 (373)
Q Consensus       167 ~~~~~~~~y-d~~~~~W~~~~~  187 (373)
                      ....++++. |..+++|.+...
T Consensus        68 ~~~~~iWvLeD~~k~~Wsk~~~   89 (129)
T PF08268_consen   68 PDSIDIWVLEDYEKQEWSKKHI   89 (129)
T ss_pred             cceEEEEEeeccccceEEEEEE
Confidence            234577776 456778986643

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=88.30  E-value=18  Score=32.19  Aligned_cols=157  Identities=12%  Similarity=0.170  Sum_probs=87.9

Q ss_pred             cceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EEEEEEc-CCceEEEEEECCCCcEEecccC--CCCCC
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITS-ARAYSVIGFDIESNTWRELSAP--MADRL  243 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg-~~~~~i~~yd~~~~~w~~~~~~--~p~~~  243 (373)
                      ...+.+|+...+.=+.......     ....+...+++. |+ ..|++.- ...-.++.||...++.+.++..  +|...
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v-----~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF  240 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEV-----KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF  240 (346)
T ss_pred             CceEEEEEcccCcccccccccc-----CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence            3478889888766554433211     122223334554 34 4777741 2234566777777888776322  23322


Q ss_pred             ----CceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc
Q 046684          244 ----EFATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE  318 (373)
Q Consensus       244 ----~~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  318 (373)
                          ....+ ...+|+...+.-+....+.+|..++  .+.+-+.+...+...-        ..+.+.+.-.++.|++.+.
T Consensus       241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~--~~g~L~~~~~~~teg~--------~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP--DGGKLELVGITPTEGQ--------FPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC--CCCEEEEEEEeccCCc--------CCccceeCCCCCEEEEEcc
Confidence                11111 2235654444434444578888887  6666666655443321        1125777777888999888


Q ss_pred             CCccEEEEEccccCCcccEEEecc
Q 046684          319 VGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       319 ~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      .++.+.+|..+-+++  +-+.+..
T Consensus       311 ~sd~i~vf~~d~~TG--~L~~~~~  332 (346)
T COG2706         311 KSDNITVFERDKETG--RLTLLGR  332 (346)
T ss_pred             CCCcEEEEEEcCCCc--eEEeccc
Confidence            888888886664477  5555443

>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A

Probab=88.19  E-value=15  Score=32.70  Aligned_cols=134  Identities=16%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEEC--CCCceeeecCCCccccc---cceeccCCceEEECCEEEEEE-----cCC-
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDS--RHDAWQIIGSMPVEFAV---RLTVWTPNESVCTRGMLYWIT-----SAR-  218 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~~~~---~~~~~~~~~~~~~~g~ly~~g-----g~~-  218 (373)
                      ++||++-|.....  .......+..+-.  ...+|.....++.....   ....-.+..++.-||.|.+--     ... 
T Consensus        70 n~IymLvG~y~~~--~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~  147 (310)
T PF13859_consen   70 NKIYMLVGSYSRS--AGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDG  147 (310)
T ss_dssp             TEEEEEEEEESS----SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---
T ss_pred             eeEEEEEEEEecc--ccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccc
Confidence            8899986544110  1112333444433  23369888777643210   011122223333466655543     122 


Q ss_pred             ceEEEEEECC-CCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEE-Eeec
Q 046684          219 AYSVIGFDIE-SNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLI-EKVP  287 (373)
Q Consensus       219 ~~~i~~yd~~-~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v-~~~p  287 (373)
                      .-.++.|... ...|..-....+.......++.- +|+|.|+...++....+|+-.+  -..+|++. ..++
T Consensus       148 ~~SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~D--mG~tWtea~gtls  217 (310)
T PF13859_consen  148 TVSLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGD--MGTTWTEALGTLS  217 (310)
T ss_dssp             EEEEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESS--TTSS-EE-TTTTT
T ss_pred             eEEEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcc--cceehhhccCccc
Confidence            2578888887 67898763333455566788888 8999999876665458999887  67889973 4454

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=87.82  E-value=16  Score=30.90  Aligned_cols=167  Identities=13%  Similarity=0.107  Sum_probs=86.5

Q ss_pred             cceeccCCCCC-CCCCCeE-EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccc
Q 046684          117 RQFRYLPLLNV-SRTNPAV-GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAV  194 (373)
Q Consensus       117 ~~w~~lp~~~~-~~~~~~~-~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~  194 (373)
                      +-|+..+|+.. ....+-+ ++.-++..       +.|+..||..           .++..|.++++-+..-.-      
T Consensus        99 ~lwe~~~P~~~~~~evPeINam~ldP~e-------nSi~~AgGD~-----------~~y~~dlE~G~i~r~~rG------  154 (325)
T KOG0649|consen   99 RLWEVKIPMQVDAVEVPEINAMWLDPSE-------NSILFAGGDG-----------VIYQVDLEDGRIQREYRG------  154 (325)
T ss_pred             hhhhhcCccccCcccCCccceeEeccCC-------CcEEEecCCe-----------EEEEEEecCCEEEEEEcC------
Confidence            34877777764 2212212 22223332       6688888654           678899999987654322      


Q ss_pred             cceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCC---CC--Cce--eEEEECCEEEEEEeecCCceE
Q 046684          195 RLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMAD---RL--EFA--TLVSRNQKLTLIGGTCGGDAC  267 (373)
Q Consensus       195 ~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~---~~--~~~--~~~~~~g~l~~~gg~~~~~~~  267 (373)
                        ...+-++++.-+..==++.|.....+-.+|.++.+-..+-.+...   -|  .+.  +....+..-.+.||  +..+.
T Consensus       155 --HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg--Gp~ls  230 (325)
T KOG0649|consen  155 --HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG--GPKLS  230 (325)
T ss_pred             --CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC--CCcee
Confidence              122333433323222233355677888999998876544122211   11  222  23333344344443  23368


Q ss_pred             EEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          268 VWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       268 i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      +|.+..    .+=+.+..+|...             ..+...++.+++.| ..+.+..|-..
T Consensus       231 lwhLrs----se~t~vfpipa~v-------------~~v~F~~d~vl~~G-~g~~v~~~~l~  274 (325)
T KOG0649|consen  231 LWHLRS----SESTCVFPIPARV-------------HLVDFVDDCVLIGG-EGNHVQSYTLN  274 (325)
T ss_pred             EEeccC----CCceEEEecccce-------------eEeeeecceEEEec-cccceeeeeec
Confidence            999966    5556666666533             44445566666554 22245555543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=87.72  E-value=16  Score=35.28  Aligned_cols=131  Identities=8%  Similarity=0.005  Sum_probs=76.4

Q ss_pred             ceEEEEEECCCCcEEecccCCCCC-CCceeEEEECCEEEEEEeecCCc---eEEEEeecCCCCCCeEEEEe-echhhhhh
Q 046684          219 AYSVIGFDIESNTWRELSAPMADR-LEFATLVSRNQKLTLIGGTCGGD---ACVWELSEGGDDDIWCLIEK-VPIEMGMR  293 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~-~~~~~~~~~~g~l~~~gg~~~~~---~~i~~~~~~~~~~~W~~v~~-~p~~~~~~  293 (373)
                      ...+.+|++.+.+=.....+-|.. |...-+-+++|++.++.|.+...   +.+|+-+...-..--+.+-. -|..... 
T Consensus       741 Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP-  819 (1012)
T KOG1445|consen  741 DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP-  819 (1012)
T ss_pred             CceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccc-
Confidence            456778888776544333344443 33344567899999988876543   66776543100011122111 1222111 


Q ss_pred             hcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEecccccceee
Q 046684          294 LSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACI  370 (373)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~  370 (373)
                                 ..--..+.+|+.|.++..+.+|..-.|+.    .   .||+...++  ....+|++|.+.+.|.|-
T Consensus       820 -----------~YD~Ds~~lfltGKGD~~v~~yEv~~esP----y---~lpl~~f~s--p~~hqGl~fl~K~~CdV~  876 (1012)
T KOG1445|consen  820 -----------HYDYDSNVLFLTGKGDRFVNMYEVIYESP----Y---LLPLAPFMS--PVGHQGLAFLQKLKCDVM  876 (1012)
T ss_pred             -----------cccCCCceEEEecCCCceEEEEEecCCCc----e---eeecccccC--CCcccceeeeccccccee
Confidence                       11123467888887777899999983333    2   356666655  667889999999998763

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=87.22  E-value=21  Score=31.86  Aligned_cols=145  Identities=14%  Similarity=0.090  Sum_probs=78.2

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +..+++.||.  ...-++|+..++.|--  .++........+...    ++     +.+++-|+.+          ..+.
T Consensus        75 ~~~l~aTGGg--DD~AflW~~~~ge~~~--eltgHKDSVt~~~Fs----hd-----gtlLATGdms----------G~v~  131 (399)
T KOG0296|consen   75 NNNLVATGGG--DDLAFLWDISTGEFAG--ELTGHKDSVTCCSFS----HD-----GTLLATGDMS----------GKVL  131 (399)
T ss_pred             CCceEEecCC--CceEEEEEccCCccee--EecCCCCceEEEEEc----cC-----ceEEEecCCC----------ccEE
Confidence            4445555553  4566899999988532  222222222222222    22     6677777665          3566


Q ss_pred             EEECCCC--ceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684          174 MYDSRHD--AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR  251 (373)
Q Consensus       174 ~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~  251 (373)
                      ++...++  .|.....+..     ......|.    .+.+... |.....++.|.+.++.-.++ .+-+......+-..-
T Consensus       132 v~~~stg~~~~~~~~e~~d-----ieWl~WHp----~a~illA-G~~DGsvWmw~ip~~~~~kv-~~Gh~~~ct~G~f~p  200 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVED-----IEWLKWHP----RAHILLA-GSTDGSVWMWQIPSQALCKV-MSGHNSPCTCGEFIP  200 (399)
T ss_pred             EEEcccCceEEEeecccCc-----eEEEEecc----cccEEEe-ecCCCcEEEEECCCcceeeE-ecCCCCCcccccccC
Confidence            7666554  4766533311     12222222    3455555 56678899999888644443 232333333333444


Q ss_pred             CCEEEEEEeecCCceEEEEeec
Q 046684          252 NQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       252 ~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      +|+..+.+ +.+..+.+|+++.
T Consensus       201 dGKr~~tg-y~dgti~~Wn~kt  221 (399)
T KOG0296|consen  201 DGKRILTG-YDDGTIIVWNPKT  221 (399)
T ss_pred             CCceEEEE-ecCceEEEEecCC
Confidence            67776665 4455589999976

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.85  E-value=25  Score=32.18  Aligned_cols=206  Identities=13%  Similarity=0.140  Sum_probs=107.7

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCC-CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLL-NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA  166 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~-~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~  166 (373)
                      .+..+|.+|+...   ...++.+|+.+++  |..-..- ........  +..     +     ++||+ |..+     + 
T Consensus        64 ~~~~dg~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~--~~~-----~-----G~i~~-g~~~-----g-  121 (370)
T COG1520          64 PADGDGTVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPI--LGS-----D-----GKIYV-GSWD-----G-  121 (370)
T ss_pred             cEeeCCeEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCce--EEe-----C-----CeEEE-eccc-----c-
Confidence            3677999999744   3489999999987  7553221 00111111  111     1     77766 3332     1 


Q ss_pred             cccceEEEEECCCC--ceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCC-C
Q 046684          167 TYESMVEMYDSRHD--AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMA-D  241 (373)
Q Consensus       167 ~~~~~~~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p-~  241 (373)
                          .+++||..++  .|+.-...       . .......+..++.+|+..  ....+.++|.++.  .|..- .+.+ .
T Consensus       122 ----~~y~ld~~~G~~~W~~~~~~-------~-~~~~~~~v~~~~~v~~~s--~~g~~~al~~~tG~~~W~~~-~~~~~~  186 (370)
T COG1520         122 ----KLYALDASTGTLVWSRNVGG-------S-PYYASPPVVGDGTVYVGT--DDGHLYALNADTGTLKWTYE-TPAPLS  186 (370)
T ss_pred             ----eEEEEECCCCcEEEEEecCC-------C-eEEecCcEEcCcEEEEec--CCCeEEEEEccCCcEEEEEe-cCCccc
Confidence                7888998654  48765543       0 122334566778888762  4578999998865  57643 2221 1


Q ss_pred             CCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhh-cCCCCCCCceEEEecCCEEEEEEcCC
Q 046684          242 RLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRL-SGGKASWGGTRCAAGNGAICLYREVG  320 (373)
Q Consensus       242 ~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~  320 (373)
                      .+.....+..++.+|+.... . .-.+|.++....+..|+.-...+....... .+..    ....+..++.+|. +...
T Consensus       187 ~~~~~~~~~~~~~vy~~~~~-~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~~~-~~~~  259 (370)
T COG1520         187 LSIYGSPAIASGTVYVGSDG-Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAV----DGGPVYVDGGVYA-GSYG  259 (370)
T ss_pred             cccccCceeecceEEEecCC-C-cceEEEEEccCCcEeeeeeeecccCcccccccccc----cCceEEECCcEEE-EecC
Confidence            12222222556666665432 1 114666654224556876444333321110 0000    1222333444433 3333


Q ss_pred             ccEEEEEccccCCcccEEEec
Q 046684          321 LGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       321 ~~~~~yd~~~~~~~~~W~~~~  341 (373)
                      .++.++|..  +.+..|+.-.
T Consensus       260 g~~~~l~~~--~G~~~W~~~~  278 (370)
T COG1520         260 GKLLCLDAD--TGELIWSFPA  278 (370)
T ss_pred             CeEEEEEcC--CCceEEEEec
Confidence            458888888  7766777543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=86.84  E-value=23  Score=32.42  Aligned_cols=180  Identities=10%  Similarity=0.020  Sum_probs=83.4

Q ss_pred             eeEEEEeCCCCCc-cccCCCCCCCCceeE-Eee-CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEc
Q 046684           63 LCCYVHNPVSDKW-HVLSLDFLPYPVRPV-SSI-GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVME  139 (373)
Q Consensus        63 ~~~~~~d~~~~~w-~~~~~~~~~~~~~~~-~~~-~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~  139 (373)
                      ..+...|..+++- .+++....+  ...+ .+. +..+|+.+.   ...+.++|+.+++-.  ...+.......+++-.+
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~~~--h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v--~~i~~G~~~~~i~~s~D   88 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGGAP--HAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVV--ATIKVGGNPRGIAVSPD   88 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-STTE--EEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEE--EEEE-SSEEEEEEE--T
T ss_pred             CEEEEEECCCCeEEEEEcCCCCc--eeEEEecCCCCEEEEEcC---CCeEEEEECCcccEE--EEEecCCCcceEEEcCC
Confidence            4666788877653 333332222  2222 233 456888765   468999999998842  22333333233333332


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCce-eeecC--CCccccccceeccCCceE-EECCEEEEEE
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW-QIIGS--MPVEFAVRLTVWTPNESV-CTRGMLYWIT  215 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~--~p~~~~~~~~~~~~~~~~-~~~g~ly~~g  215 (373)
                                ++.++++.+.         ...+.++|.++.+= +.++.  ++..  . ...|. .+.+ ...+..|++.
T Consensus        89 ----------G~~~~v~n~~---------~~~v~v~D~~tle~v~~I~~~~~~~~--~-~~~Rv-~aIv~s~~~~~fVv~  145 (369)
T PF02239_consen   89 ----------GKYVYVANYE---------PGTVSVIDAETLEPVKTIPTGGMPVD--G-PESRV-AAIVASPGRPEFVVN  145 (369)
T ss_dssp             ----------TTEEEEEEEE---------TTEEEEEETTT--EEEEEE--EE-TT--T-S---E-EEEEE-SSSSEEEEE
T ss_pred             ----------CCEEEEEecC---------CCceeEeccccccceeeccccccccc--c-cCCCc-eeEEecCCCCEEEEE
Confidence                      4444444443         35788899877542 22211  1100  0 00111 1111 1234456654


Q ss_pred             cCCceEEEEEECCCCcEEecccCCCCCCCce-eEEEECCEEEEEEeecCCceEEEEeec
Q 046684          216 SARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       216 g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      -.....++..|....+-..+ ......+.-+ ....-+++.++++......+.+++.++
T Consensus       146 lkd~~~I~vVdy~d~~~~~~-~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  146 LKDTGEIWVVDYSDPKNLKV-TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             ETTTTEEEEEETTTSSCEEE-EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             EccCCeEEEEEeccccccce-eeecccccccccccCcccceeeecccccceeEEEeecc
Confidence            45567888888765422211 1111222212 233345676666655555577777654

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=86.58  E-value=26  Score=32.13  Aligned_cols=189  Identities=12%  Similarity=0.124  Sum_probs=89.3

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccce-eccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQF-RYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      ++++|+....  .+.+.+.|..|++- .+++...   ..+.. ....+.+       ..+|+.+ .+          ..+
T Consensus         5 ~~l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~---~~h~~-~~~s~Dg-------r~~yv~~-rd----------g~v   60 (369)
T PF02239_consen    5 GNLFYVVERG--SGSVAVIDGATNKVVARIPTGG---APHAG-LKFSPDG-------RYLYVAN-RD----------GTV   60 (369)
T ss_dssp             GGEEEEEEGG--GTEEEEEETTT-SEEEEEE-ST---TEEEE-EE-TT-S-------SEEEEEE-TT----------SEE
T ss_pred             ccEEEEEecC--CCEEEEEECCCCeEEEEEcCCC---CceeE-EEecCCC-------CEEEEEc-CC----------CeE
Confidence            4566665532  57899999999764 3344321   11222 2221111       5688875 22          368


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCce-EEECCEEEEEEcCCceEEEEEECCCCcEE-ecccC-CC----CCCCc
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNES-VCTRGMLYWITSARAYSVIGFDIESNTWR-ELSAP-MA----DRLEF  245 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~-~~~~g~ly~~gg~~~~~i~~yd~~~~~w~-~~~~~-~p----~~~~~  245 (373)
                      .++|..+++  .+...+..       .....+ +.-+|+..+.+....+.+..+|.++.+-. .++.. ++    ..|. 
T Consensus        61 sviD~~~~~--~v~~i~~G-------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv-  130 (369)
T PF02239_consen   61 SVIDLATGK--VVATIKVG-------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV-  130 (369)
T ss_dssp             EEEETTSSS--EEEEEE-S-------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E-
T ss_pred             EEEECCccc--EEEEEecC-------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc-
Confidence            899998877  33333211       111122 23467755555566788999998876543 33111 11    1122 


Q ss_pred             eeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec-CCE-EEEEEcCCcc
Q 046684          246 ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG-NGA-ICLYREVGLG  322 (373)
Q Consensus       246 ~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~-i~~~~~~~~~  322 (373)
                      .+++. ..+..|++.-.+..  +||.++-  ....=..+..+....+.           +..... +++ +++.....+.
T Consensus       131 ~aIv~s~~~~~fVv~lkd~~--~I~vVdy--~d~~~~~~~~i~~g~~~-----------~D~~~dpdgry~~va~~~sn~  195 (369)
T PF02239_consen  131 AAIVASPGRPEFVVNLKDTG--EIWVVDY--SDPKNLKVTTIKVGRFP-----------HDGGFDPDGRYFLVAANGSNK  195 (369)
T ss_dssp             EEEEE-SSSSEEEEEETTTT--EEEEEET--TTSSCEEEEEEE--TTE-----------EEEEE-TTSSEEEEEEGGGTE
T ss_pred             eeEEecCCCCEEEEEEccCC--eEEEEEe--ccccccceeeecccccc-----------cccccCcccceeeecccccce
Confidence            23333 34555666544332  6787764  22221233344444332           223333 333 3343345567


Q ss_pred             EEEEEccccCC
Q 046684          323 MIIWREDEDKR  333 (373)
Q Consensus       323 ~~~yd~~~~~~  333 (373)
                      +.+.|.+  ++
T Consensus       196 i~viD~~--~~  204 (369)
T PF02239_consen  196 IAVIDTK--TG  204 (369)
T ss_dssp             EEEEETT--TT
T ss_pred             eEEEeec--cc
Confidence            8888888  77

...

>PRK13684 Ycf48-like protein; Provisional

Probab=86.56  E-value=24  Score=31.79  Aligned_cols=124  Identities=12%  Similarity=0.141  Sum_probs=63.0

Q ss_pred             ECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEE-C-CCCcEEecccCCCCC-CCceeEEEE
Q 046684          176 DSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFD-I-ESNTWRELSAPMADR-LEFATLVSR  251 (373)
Q Consensus       176 d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd-~-~~~~w~~~~~~~p~~-~~~~~~~~~  251 (373)
                      |....+|+.+....        ...-..++. -+|.++++|..   ....+. . .-.+|+.+..|.... .....++..
T Consensus       200 ~~gg~tW~~~~~~~--------~~~l~~i~~~~~g~~~~vg~~---G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~  268 (334)
T PRK13684        200 EPGQTAWTPHQRNS--------SRRLQSMGFQPDGNLWMLARG---GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR  268 (334)
T ss_pred             CCCCCeEEEeeCCC--------cccceeeeEcCCCCEEEEecC---CEEEEccCCCCCccccccCCccccccceeeEEEc
Confidence            34446798875431        111222233 36788888521   233342 2 335899762222211 111223322


Q ss_pred             -CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684          252 -NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       252 -~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd  327 (373)
                       ++.+++++...    .++.-.+  ...+|+.+..   ++...            ...+...++.+|+.| ..+.|+.|+
T Consensus       269 ~~~~~~~~G~~G----~v~~S~d--~G~tW~~~~~~~~~~~~~------------~~~~~~~~~~~~~~G-~~G~il~~~  329 (334)
T PRK13684        269 TPGEIWAGGGNG----TLLVSKD--GGKTWEKDPVGEEVPSNF------------YKIVFLDPEKGFVLG-QRGVLLRYV  329 (334)
T ss_pred             CCCCEEEEcCCC----eEEEeCC--CCCCCeECCcCCCCCcce------------EEEEEeCCCceEEEC-CCceEEEec
Confidence             66788776432    3444433  5679998743   32111            134444577777755 445788887


Q ss_pred             cc
Q 046684          328 ED  329 (373)
Q Consensus       328 ~~  329 (373)
                      ..
T Consensus       330 ~~  331 (334)
T PRK13684        330 GS  331 (334)
T ss_pred             CC
Confidence            65

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=86.28  E-value=9.2  Score=33.85  Aligned_cols=106  Identities=8%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             eEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684          204 SVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       204 ~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      ++-++.+ |++.......|-.++..+.++-..   +..++.+......+|++.+.|.. +..+.+|+..-    +.--.+
T Consensus       325 vVdfd~k-yIVsASgDRTikvW~~st~efvRt---l~gHkRGIAClQYr~rlvVSGSS-DntIRlwdi~~----G~cLRv  395 (499)
T KOG0281|consen  325 VVDFDDK-YIVSASGDRTIKVWSTSTCEFVRT---LNGHKRGIACLQYRDRLVVSGSS-DNTIRLWDIEC----GACLRV  395 (499)
T ss_pred             eeccccc-eEEEecCCceEEEEeccceeeehh---hhcccccceehhccCeEEEecCC-CceEEEEeccc----cHHHHH
Confidence            3445677 666544556788888888877544   34455666778889998887754 44578998864    221111


Q ss_pred             EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          284 EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      -+--.+.             ..|+-.+++=.+.|++++++-++|+.  +.
T Consensus       396 LeGHEeL-------------vRciRFd~krIVSGaYDGkikvWdl~--aa  430 (499)
T KOG0281|consen  396 LEGHEEL-------------VRCIRFDNKRIVSGAYDGKIKVWDLQ--AA  430 (499)
T ss_pred             HhchHHh-------------hhheeecCceeeeccccceEEEEecc--cc
Confidence            1111111             33445567777778888888888887  54

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=86.04  E-value=24  Score=31.25  Aligned_cols=218  Identities=17%  Similarity=0.162  Sum_probs=90.5

Q ss_pred             CCccccCCCCC-C-CCc-eeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCC-CCCCCCCeEEEEEcCCCCCCCCC
Q 046684           73 DKWHVLSLDFL-P-YPV-RPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLL-NVSRTNPAVGIVMEGPAQHGPFP  148 (373)
Q Consensus        73 ~~w~~~~~~~~-~-~~~-~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~-~~~~~~~~~~~~~~~~~~~~~~~  148 (373)
                      ..|........ + ... ..+...++..++.|.   ...++.-.=.=.+|.+++.. +.+.....+.....         
T Consensus        47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~---~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~---------  114 (302)
T PF14870_consen   47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE---PGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGD---------  114 (302)
T ss_dssp             SS-EE-----S-----EEEEEEEETTEEEEEEE---TTEEEEESSTTSS-EE----TT-SS-EEEEEEEET---------
T ss_pred             ccccccccCCCccceeeEEEEEecCCceEEEcC---CceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCC---------
Confidence            57887743322 2 122 234445667777765   23444444455679998632 22333334444442         


Q ss_pred             ceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCEEEEEEcCCceEEEEEEC
Q 046684          149 NFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       149 ~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~~~~i~~yd~  227 (373)
                       ..+++++...           .++.=.-...+|+.+..-..       ... ..+. .-+|.+..+ +..-.-....|+
T Consensus       115 -~~~~l~~~~G-----------~iy~T~DgG~tW~~~~~~~~-------gs~-~~~~r~~dG~~vav-s~~G~~~~s~~~  173 (302)
T PF14870_consen  115 -GSAELAGDRG-----------AIYRTTDGGKTWQAVVSETS-------GSI-NDITRSSDGRYVAV-SSRGNFYSSWDP  173 (302)
T ss_dssp             -TEEEEEETT-------------EEEESSTTSSEEEEE-S-----------E-EEEEE-TTS-EEEE-ETTSSEEEEE-T
T ss_pred             -CcEEEEcCCC-----------cEEEeCCCCCCeeEcccCCc-------cee-EeEEECCCCcEEEE-ECcccEEEEecC
Confidence             5666666432           23332334467998765321       111 1112 235665545 455566778899


Q ss_pred             CCCcEEecccCCCCCC-CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          228 ESNTWRELSAPMADRL-EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~-~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      -...|...  ..+..+ ...-...-++.|+++.  .+..+..=+...  +.+.|.+- ..|.....        ..-..+
T Consensus       174 G~~~w~~~--~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~--~~~~w~~~-~~~~~~~~--------~~~ld~  238 (302)
T PF14870_consen  174 GQTTWQPH--NRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPD--DGETWSEP-IIPIKTNG--------YGILDL  238 (302)
T ss_dssp             T-SS-EEE--E--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TT--EEEEE----B-TTSS----------S-EEEE
T ss_pred             CCccceEE--ccCccceehhceecCCCCEEEEe--CCcEEEEccCCC--Cccccccc-cCCcccCc--------eeeEEE
Confidence            99999988  333223 2222233477888875  333233333112  45678772 23321110        001333


Q ss_pred             Eec-CCEEEEEEcCCccEEEEEccccCCcccEEEeccc
Q 046684          307 AAG-NGAICLYREVGLGMIIWREDEDKRKWEWVWVGGC  343 (373)
Q Consensus       307 ~~~-~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~  343 (373)
                      +.. ++.+++.++..  .+.+..+. -+  +|++.+..
T Consensus       239 a~~~~~~~wa~gg~G--~l~~S~Dg-Gk--tW~~~~~~  271 (302)
T PF14870_consen  239 AYRPPNEIWAVGGSG--TLLVSTDG-GK--TWQKDRVG  271 (302)
T ss_dssp             EESSSS-EEEEESTT---EEEESST-TS--S-EE-GGG
T ss_pred             EecCCCCEEEEeCCc--cEEEeCCC-Cc--cceECccc
Confidence            333 68888877663  45555441 56  89988654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=85.57  E-value=32  Score=32.25  Aligned_cols=182  Identities=16%  Similarity=0.062  Sum_probs=83.4

Q ss_pred             eEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCC
Q 046684           52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT  130 (373)
Q Consensus        52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~  130 (373)
                      .++.....+....++.+|..+..-..+......... ..-+.+| .|.+.....+..+++++|..+++.+++......  
T Consensus       217 ~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~-~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~--  293 (429)
T PRK01742        217 KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGA-PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGN--  293 (429)
T ss_pred             EEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCc-eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCC--
Confidence            343333333335677788766544333221111111 2233454 444443333345789999988887766432211  


Q ss_pred             CCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE
Q 046684          131 NPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM  210 (373)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~  210 (373)
                      ........++         .+|+......        ....++.++..++.=+.+...         . .. ....-+|+
T Consensus       294 ~~~~~wSpDG---------~~i~f~s~~~--------g~~~I~~~~~~~~~~~~l~~~---------~-~~-~~~SpDG~  345 (429)
T PRK01742        294 NTEPSWSPDG---------QSILFTSDRS--------GSPQVYRMSASGGGASLVGGR---------G-YS-AQISADGK  345 (429)
T ss_pred             cCCEEECCCC---------CEEEEEECCC--------CCceEEEEECCCCCeEEecCC---------C-CC-ccCCCCCC
Confidence            1111111111         3455544222        124566666655432322110         0 11 11222444


Q ss_pred             -EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEe
Q 046684          211 -LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWEL  271 (373)
Q Consensus       211 -ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~  271 (373)
                       +++.+ .  ..+..+|+.++++..+ ... ..... ....-+|+..+.+...+. ..+|.+
T Consensus       346 ~ia~~~-~--~~i~~~Dl~~g~~~~l-t~~-~~~~~-~~~sPdG~~i~~~s~~g~-~~~l~~  400 (429)
T PRK01742        346 TLVMIN-G--DNVVKQDLTSGSTEVL-SST-FLDES-PSISPNGIMIIYSSTQGL-GKVLQL  400 (429)
T ss_pred             EEEEEc-C--CCEEEEECCCCCeEEe-cCC-CCCCC-ceECCCCCEEEEEEcCCC-ceEEEE
Confidence             44442 2  4577799999988766 221 11111 123446766666554333 345554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=85.42  E-value=24  Score=32.21  Aligned_cols=198  Identities=11%  Similarity=0.001  Sum_probs=83.2

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +..+++.+..++...++..|..|++-++|-.-+..... ... +...   +     ..+|.+...           ..+.
T Consensus        47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~-~s~~---~-----~~~~Yv~~~-----------~~l~  105 (386)
T PF14583_consen   47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGF-LSPD---D-----RALYYVKNG-----------RSLR  105 (386)
T ss_dssp             S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-E-E-TT---S-----SEEEEEETT-----------TEEE
T ss_pred             CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceE-EecC---C-----CeEEEEECC-----------CeEE
Confidence            44566655556788999999999999998776532221 222 2111   1     455434211           2467


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEE---c------------------CCceEEEEEECCCCcE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWIT---S------------------ARAYSVIGFDIESNTW  232 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~g---g------------------~~~~~i~~yd~~~~~w  232 (373)
                      ..|.+|.+=+.+-..|..+.     -+...++.-++..++-.   .                  .-...|...|+.+++.
T Consensus       106 ~vdL~T~e~~~vy~~p~~~~-----g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~  180 (386)
T PF14583_consen  106 RVDLDTLEERVVYEVPDDWK-----GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER  180 (386)
T ss_dssp             EEETTT--EEEEEE--TTEE-----EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred             EEECCcCcEEEEEECCcccc-----cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence            77777766555555543211     01111111233333221   0                  1246788899999888


Q ss_pred             EecccCCCCCCCceeEEE-ECCEEEEEEeecCC---ceEEEEeecCCCCCCeEEEE-eechhhhhhhcCCCCCCCceEEE
Q 046684          233 RELSAPMADRLEFATLVS-RNQKLTLIGGTCGG---DACVWELSEGGDDDIWCLIE-KVPIEMGMRLSGGKASWGGTRCA  307 (373)
Q Consensus       233 ~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~---~~~i~~~~~~~~~~~W~~v~-~~p~~~~~~~~~~~~~~~~~~~~  307 (373)
                      +.+ ..-.. -.++-... .+..+.+++....-   .-.||.+++  +.....++. .++.+..           ++...
T Consensus       181 ~~v-~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--dg~~~~~v~~~~~~e~~-----------gHEfw  245 (386)
T PF14583_consen  181 KVV-FEDTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--DGSNVKKVHRRMEGESV-----------GHEFW  245 (386)
T ss_dssp             EEE-EEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--TS---EESS---TTEEE-----------EEEEE
T ss_pred             eEE-EecCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--CCCcceeeecCCCCccc-----------ccccc
Confidence            877 32211 11222222 25566666432211   136899988  444444443 3333222           24444


Q ss_pred             ec-CCEEEEEE----cCCccEEEEEccccCCc
Q 046684          308 AG-NGAICLYR----EVGLGMIIWREDEDKRK  334 (373)
Q Consensus       308 ~~-~~~i~~~~----~~~~~~~~yd~~~~~~~  334 (373)
                      .. |..|+...    +...-+..||++  +.+
T Consensus       246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~--t~~  275 (386)
T PF14583_consen  246 VPDGSTIWYDSYTPGGQDFWIAGYDPD--TGE  275 (386)
T ss_dssp             -TTSS-EEEEEEETTT--EEEEEE-TT--T--
T ss_pred             cCCCCEEEEEeecCCCCceEEEeeCCC--CCC
Confidence            44 44555443    223357788998  773

>smart00284 OLF Olfactomedin-like domains

Probab=85.19  E-value=23  Score=30.36  Aligned_cols=159  Identities=13%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             CCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCC---------C-CeEEEEEcCCCCCCCCCceEEEE
Q 046684           85 YPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT---------N-PAVGIVMEGPAQHGPFPNFRIYV  154 (373)
Q Consensus        85 ~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~kl~~  154 (373)
                      -.+.+.++.||-+|..-..  ...+..||..+++-.....+|....         . ..+-+..|.         .-|.+
T Consensus        74 ~~GtG~VVYngslYY~~~~--s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE---------~GLWv  142 (255)
T smart00284       74 GQGTGVVVYNGSLYFNKFN--SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDE---------NGLWV  142 (255)
T ss_pred             cccccEEEECceEEEEecC--CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcC---------CceEE
Confidence            3444567788888885443  5789999999998754333332110         0 011111111         45666


Q ss_pred             EeccCCCCCCCCcccceEEEEECCC----CceeeecCCCccccccceeccCCceEEECCEEEEEEc---CCceEEEEEEC
Q 046684          155 AGGMSDEPRGGATYESMVEMYDSRH----DAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS---ARAYSVIGFDI  227 (373)
Q Consensus       155 ~gg~~~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg---~~~~~i~~yd~  227 (373)
                      |-...     .......+-..|+.+    ++|..-..-          +....+.++-|.||++..   ....-..+||+
T Consensus       143 IYat~-----~~~g~ivvSkLnp~tL~ve~tW~T~~~k----------~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt  207 (255)
T smart00284      143 IYATE-----QNAGKIVISKLNPATLTIENTWITTYNK----------RSASNAFMICGILYVTRSLGSKGEKVFYAYDT  207 (255)
T ss_pred             EEecc-----CCCCCEEEEeeCcccceEEEEEEcCCCc----------ccccccEEEeeEEEEEccCCCCCcEEEEEEEC
Confidence            64332     222222333344433    467653222          223345677899999952   22455789999


Q ss_pred             CCCcEEecccCCCCCCCceeEEEE---CCEEEEEEeecCCceEEEEee
Q 046684          228 ESNTWRELSAPMADRLEFATLVSR---NQKLTLIGGTCGGDACVWELS  272 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~---~g~l~~~gg~~~~~~~i~~~~  272 (373)
                      .+++=..+..+++...........   +.+||+-.   +..+..|++.
T Consensus       208 ~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd---ng~~l~Y~v~  252 (255)
T smart00284      208 NTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN---NGHLVHYDIA  252 (255)
T ss_pred             CCCccceeeeeeccccccceeceeCCCCCeEEEEe---CCeEEEEEEE
Confidence            987755554455554444444443   56777753   3334555553

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=85.17  E-value=56  Score=34.74  Aligned_cols=221  Identities=10%  Similarity=0.065  Sum_probs=108.1

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCC----------CC--CCCeEEEEEcCCCCCCCCCceEEEEEec
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNV----------SR--TNPAVGIVMEGPAQHGPFPNFRIYVAGG  157 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~kl~~~gg  157 (373)
                      +...+|.+|+....  .+.+.++|+..+.-..+.....          ..  .-..+++-.++         +.||+...
T Consensus       575 vd~~~g~lyVaDs~--n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g---------n~LYVaDt  643 (1057)
T PLN02919        575 IDLLNNRLFISDSN--HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK---------NLLYVADT  643 (1057)
T ss_pred             EECCCCeEEEEECC--CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC---------CEEEEEeC
Confidence            33457889997653  5789999987654433332110          00  11222222111         56787643


Q ss_pred             cCCCCCCCCcccceEEEEECCCCceeeecCCCc-c--cc---cc-ce-eccCCceEEE--CCEEEEEEcCCceEEEEEEC
Q 046684          158 MSDEPRGGATYESMVEMYDSRHDAWQIIGSMPV-E--FA---VR-LT-VWTPNESVCT--RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~--~~---~~-~~-~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~  227 (373)
                      .+          ..+.++|..++.=+.+..... .  +.   .. .. ......+++-  +|.+|+. ....+.|..||+
T Consensus       644 ~n----------~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa-d~~~~~I~v~d~  712 (1057)
T PLN02919        644 EN----------HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA-MAGQHQIWEYNI  712 (1057)
T ss_pred             CC----------ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE-ECCCCeEEEEEC
Confidence            22          357777776665443322100 0  00   00 00 0111223333  5789987 345678999999


Q ss_pred             CCCcEEecccCC---------CC--C-CCceeEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEe-e---chh
Q 046684          228 ESNTWRELSAPM---------AD--R-LEFATLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEK-V---PIE  289 (373)
Q Consensus       228 ~~~~w~~~~~~~---------p~--~-~~~~~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~-~---p~~  289 (373)
                      .++....+...-         +.  . ..-.+++.. +| .||+.... ...+.+|+++.    ..-+.+.. -   +..
T Consensus       713 ~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-n~~Irv~D~~t----g~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        713 SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-SSSIRALDLKT----GGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-CCeEEEEECCC----CcEEEEEecccccCcc
Confidence            887665441110         00  0 011123333 33 58887643 33477787764    33222211 0   000


Q ss_pred             hhhhhcC--C----CCCCCceEEE-ecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684          290 MGMRLSG--G----KASWGGTRCA-AGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       290 ~~~~~~~--~----~~~~~~~~~~-~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      . ..+..  +    .....+..++ ..++.||+.+...+.|.+||++  ++  ....+.+
T Consensus       788 l-~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~--tg--~v~tiaG  842 (1057)
T PLN02919        788 L-FKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA--TK--RVTTLAG  842 (1057)
T ss_pred             c-ccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC--CC--eEEEEec
Confidence            0 00000  0    0011133333 3467899999888899999999  88  6555543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=85.09  E-value=22  Score=30.10  Aligned_cols=184  Identities=16%  Similarity=0.150  Sum_probs=89.8

Q ss_pred             EEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEE
Q 046684           97 LLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD  176 (373)
Q Consensus        97 l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd  176 (373)
                      |++..|+  ...+..|...|+...+.-+.+...-+ .+.+-          ++.+..+.+|.           ..+-+||
T Consensus        12 iLvsA~Y--DhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiT----------pdk~~LAaa~~-----------qhvRlyD   67 (311)
T KOG0315|consen   12 ILVSAGY--DHTIRFWQALTGICSRTIQHPDSQVN-RLEIT----------PDKKDLAAAGN-----------QHVRLYD   67 (311)
T ss_pred             EEEeccC--cceeeeeehhcCeEEEEEecCcccee-eEEEc----------CCcchhhhccC-----------CeeEEEE
Confidence            4444444  45677778888776553222222211 11111          11555555554           3688999


Q ss_pred             CCCCceeeecCCCccccccceeccCCce--EEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCE
Q 046684          177 SRHDAWQIIGSMPVEFAVRLTVWTPNES--VCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQK  254 (373)
Q Consensus       177 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~--~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~  254 (373)
                      ..+++=..+..+       .....+..+  ...+|+--.- |.....+-+.|+.+-+-.+. ...+.+.  -.++..-+.
T Consensus        68 ~~S~np~Pv~t~-------e~h~kNVtaVgF~~dgrWMyT-gseDgt~kIWdlR~~~~qR~-~~~~spV--n~vvlhpnQ  136 (311)
T KOG0315|consen   68 LNSNNPNPVATF-------EGHTKNVTAVGFQCDGRWMYT-GSEDGTVKIWDLRSLSCQRN-YQHNSPV--NTVVLHPNQ  136 (311)
T ss_pred             ccCCCCCceeEE-------eccCCceEEEEEeecCeEEEe-cCCCceEEEEeccCcccchh-ccCCCCc--ceEEecCCc
Confidence            988762222111       011112111  2346665555 34566777888876433333 2222111  123333233


Q ss_pred             EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          255 LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       255 l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      --++.|.....+.||++.+    +.-+.. -+|.....         .....+.-++...+.....+..+++++-
T Consensus       137 teLis~dqsg~irvWDl~~----~~c~~~-liPe~~~~---------i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGE----NSCTHE-LIPEDDTS---------IQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             ceEEeecCCCcEEEEEccC----Cccccc-cCCCCCcc---------eeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence            3333345555689999976    433321 23332211         0233344466666666666788888887

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=84.78  E-value=11  Score=36.78  Aligned_cols=109  Identities=13%  Similarity=0.139  Sum_probs=69.1

Q ss_pred             eEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684          204 SVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       204 ~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      +.++-+.-|+.+|.....+...|..++.-.++ ..- ....-..++..-...|++.|.....+.+|++..    .+  .+
T Consensus       541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi-F~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~----~~--~v  612 (707)
T KOG0263|consen  541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI-FTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN----GS--LV  612 (707)
T ss_pred             EEECCcccccccCCCCceEEEEEcCCCcEEEE-ecC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCC----Cc--ch
Confidence            45667889999888888899999988876555 211 111222333444555777776767789999965    21  11


Q ss_pred             EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          284 EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ..+-    .+ .+.    ....-+..+|.+++.+|..+.+.+||..
T Consensus       613 ~~l~----~H-t~t----i~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  613 KQLK----GH-TGT----IYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             hhhh----cc-cCc----eeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            1111    11 111    0234445688999999998899999997

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.05  E-value=26  Score=29.99  Aligned_cols=111  Identities=12%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             EEEC-CEEEEEEcCCceEEEEEECCCC--cEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeE
Q 046684          205 VCTR-GMLYWITSARAYSVIGFDIESN--TWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWC  281 (373)
Q Consensus       205 ~~~~-g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~  281 (373)
                      ++++ .+-|++-|.....+.+-|+.++  .|+.+ .   ..|......++++. .++|.+.+ .+.+...++  .+.-|.
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-l---g~RiE~sa~vvgdf-VV~GCy~g-~lYfl~~~t--Gs~~w~   88 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-L---GVRIECSAIVVGDF-VVLGCYSG-GLYFLCVKT--GSQIWN   88 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEeehh-h---CceeeeeeEEECCE-EEEEEccC-cEEEEEecc--hhheee
Confidence            4454 3444444667788999999987  48766 1   22333344445655 44454433 223333333  234455


Q ss_pred             EEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEE
Q 046684          282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWV  338 (373)
Q Consensus       282 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~  338 (373)
                      -+..-..+.            ...+...++.||.- ..+...++.|++  +..+.|+
T Consensus        89 f~~~~~vk~------------~a~~d~~~glIycg-shd~~~yalD~~--~~~cVyk  130 (354)
T KOG4649|consen   89 FVILETVKV------------RAQCDFDGGLIYCG-SHDGNFYALDPK--TYGCVYK  130 (354)
T ss_pred             eeehhhhcc------------ceEEcCCCceEEEe-cCCCcEEEeccc--ccceEEe
Confidence            443222111            25555667777774 344578888999  8766777

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=83.81  E-value=27  Score=32.48  Aligned_cols=158  Identities=13%  Similarity=0.019  Sum_probs=81.9

Q ss_pred             CCceEEEEEecCCC-eeEEEEeCCCC-----CccccCCCCCCCCceeEEeeCcEEEEeeCC-CCceEEEEEcCcccc---
Q 046684           49 RPAWFLALPTRNRG-LCCYVHNPVSD-----KWHVLSLDFLPYPVRPVSSIGSFLLLRPIN-STILQLVLCNPFTRQ---  118 (373)
Q Consensus        49 ~~~~l~~~~~~~~~-~~~~~~d~~~~-----~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~-~~~~~~~v~np~t~~---  118 (373)
                      ...++++....+.. +.++..|....     .|..+.... ......+...++.+|+.... .....+...+..+..   
T Consensus       237 d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~  315 (414)
T PF02897_consen  237 DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAE  315 (414)
T ss_dssp             TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGG
T ss_pred             cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccccc
Confidence            34455555555555 78888888764     566553322 22233466668888886654 335678888777654   


Q ss_pred             ee-ccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECC-CCceeeecCCCccccccc
Q 046684          119 FR-YLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR-HDAWQIIGSMPVEFAVRL  196 (373)
Q Consensus       119 w~-~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~~~~~~  196 (373)
                      |. .+.+......-..+.+..           +++++..-.        .....+.+|+.. +..-..++..+.      
T Consensus       316 ~~~~l~~~~~~~~l~~~~~~~-----------~~Lvl~~~~--------~~~~~l~v~~~~~~~~~~~~~~p~~------  370 (414)
T PF02897_consen  316 WWTVLIPEDEDVSLEDVSLFK-----------DYLVLSYRE--------NGSSRLRVYDLDDGKESREIPLPEA------  370 (414)
T ss_dssp             EEEEEE--SSSEEEEEEEEET-----------TEEEEEEEE--------TTEEEEEEEETT-TEEEEEEESSSS------
T ss_pred             ceeEEcCCCCceeEEEEEEEC-----------CEEEEEEEE--------CCccEEEEEECCCCcEEeeecCCcc------
Confidence            55 444332222222222222           566665422        235688999998 333333332211      


Q ss_pred             eeccCCceEE---ECCEEEEEE--cCCceEEEEEECCCCcEEec
Q 046684          197 TVWTPNESVC---TRGMLYWIT--SARAYSVIGFDIESNTWREL  235 (373)
Q Consensus       197 ~~~~~~~~~~---~~g~ly~~g--g~~~~~i~~yd~~~~~w~~~  235 (373)
                         .......   -.+.+++.-  -.....++.||+++++.+.+
T Consensus       371 ---g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  371 ---GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             ---SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             ---eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence               1001111   123444442  23467899999999988765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=83.65  E-value=24  Score=32.03  Aligned_cols=112  Identities=12%  Similarity=0.021  Sum_probs=62.0

Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEEEEC-CEEEEEEee--------cCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRN-QKLTLIGGT--------CGGDACVWELSEGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~-g~l~~~gg~--------~~~~~~i~~~~~~~~~~~W~~v~~~p~~~  290 (373)
                      +.+..+|.++.+-... .+  ......++..-+ ..||+...+        +...+.+|+..      +.+.+.+++.+.
T Consensus        27 ~~v~ViD~~~~~v~g~-i~--~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~------t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGM-TD--GGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ------THLPIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEEEE-EE--ccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECc------cCcEEeEEccCC
Confidence            6788899888665432 22  222222333334 467777652        22338888874      456666666533


Q ss_pred             hhhhcCCCCCCCceEEEecCCEEEEEEcC-CccEEEEEccccCCcccEEEecccccCC
Q 046684          291 GMRLSGGKASWGGTRCAAGNGAICLYREV-GLGMIIWREDEDKRKWEWVWVGGCCLTG  347 (373)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~yd~~~~~~~~~W~~~~~~~~~~  347 (373)
                      -.++..+ .....+.+...|..+|+.+.. ...+-+.|.+  ++    +.+...+.+.
T Consensus        98 ~p~~~~~-~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~--~~----kvv~ei~vp~  148 (352)
T TIGR02658        98 GPRFLVG-TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE--GK----AFVRMMDVPD  148 (352)
T ss_pred             Cchhhcc-CccceEEECCCCCEEEEecCCCCCEEEEEECC--CC----cEEEEEeCCC
Confidence            2221111 011134444556678888755 6789999999  77    4444444433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=83.60  E-value=39  Score=31.72  Aligned_cols=183  Identities=10%  Similarity=0.076  Sum_probs=92.0

Q ss_pred             eeEEEEeCCCCCccccCCCCCC-CCceeEE---eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEE
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLP-YPVRPVS---SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVM  138 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~-~~~~~~~---~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~  138 (373)
                      ..++++++..+...+-.-.+.. ...+..+   .-||.+.....   ...+.+|++-+++..+-.. ..+-.-++++++.
T Consensus       222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS---~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr  297 (626)
T KOG2106|consen  222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDS---GGNILIWSKGTNRISKQVH-AHDGGVFSLCMLR  297 (626)
T ss_pred             ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecC---CceEEEEeCCCceEEeEee-ecCCceEEEEEec
Confidence            5666678877766554322221 1133222   22565555443   5679999998887755333 3334445666665


Q ss_pred             cCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcC
Q 046684          139 EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSA  217 (373)
Q Consensus       139 ~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~  217 (373)
                      +          ++|+- ||.+          ..+..+|..-++=+++ .+|.+       ......+.- .+-+|+  |.
T Consensus       298 ~----------GtllS-GgKD----------Rki~~Wd~~y~k~r~~-elPe~-------~G~iRtv~e~~~di~v--GT  346 (626)
T KOG2106|consen  298 D----------GTLLS-GGKD----------RKIILWDDNYRKLRET-ELPEQ-------FGPIRTVAEGKGDILV--GT  346 (626)
T ss_pred             C----------ccEee-cCcc----------ceEEeccccccccccc-cCchh-------cCCeeEEecCCCcEEE--ee
Confidence            3          67776 7765          3455666322222222 23332       122222222 234554  34


Q ss_pred             CceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684          218 RAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI  288 (373)
Q Consensus       218 ~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~  288 (373)
                      ..+.|+.=.++++ ++.+ .. .....--+++.. ...+++..|.+. .+.+|+  +  ..-.|+++..-|.
T Consensus       347 trN~iL~Gt~~~~-f~~~-v~-gh~delwgla~hps~~q~~T~gqdk-~v~lW~--~--~k~~wt~~~~d~~  410 (626)
T KOG2106|consen  347 TRNFILQGTLENG-FTLT-VQ-GHGDELWGLATHPSKNQLLTCGQDK-HVRLWN--D--HKLEWTKIIEDPA  410 (626)
T ss_pred             ccceEEEeeecCC-ceEE-EE-ecccceeeEEcCCChhheeeccCcc-eEEEcc--C--CceeEEEEecCce
Confidence            5566666555543 2222 11 111122233332 344555555443 368999  3  4578999876654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=83.16  E-value=37  Score=31.04  Aligned_cols=139  Identities=12%  Similarity=0.154  Sum_probs=74.8

Q ss_pred             eeEEEEeCCCCC--ccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccc--eec-cCCCCCCCCCCeEEEE
Q 046684           63 LCCYVHNPVSDK--WHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRY-LPLLNVSRTNPAVGIV  137 (373)
Q Consensus        63 ~~~~~~d~~~~~--w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~-lp~~~~~~~~~~~~~~  137 (373)
                      ..+.++|+.+.+  |............-.+...+|.||+...   ...++++|+.+++  |.. ++. . .+.. ...+.
T Consensus        78 G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~---~g~~y~ld~~~G~~~W~~~~~~-~-~~~~-~~~v~  151 (370)
T COG1520          78 GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW---DGKLYALDASTGTLVWSRNVGG-S-PYYA-SPPVV  151 (370)
T ss_pred             CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc---cceEEEEECCCCcEEEEEecCC-C-eEEe-cCcEE
Confidence            378889998875  8655332001111123334888888776   3489999997765  644 222 1 1111 11111


Q ss_pred             EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEE
Q 046684          138 MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWIT  215 (373)
Q Consensus       138 ~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~g  215 (373)
                      .     +     +.+|+...           ...++..|..+++  |+.-...+.      ........+..++.+|+..
T Consensus       152 ~-----~-----~~v~~~s~-----------~g~~~al~~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~~vy~~~  204 (370)
T COG1520         152 G-----D-----GTVYVGTD-----------DGHLYALNADTGTLKWTYETPAPL------SLSIYGSPAIASGTVYVGS  204 (370)
T ss_pred             c-----C-----cEEEEecC-----------CCeEEEEEccCCcEEEEEecCCcc------ccccccCceeecceEEEec
Confidence            1     1     66666431           2457777777654  874433210      0112222236778888873


Q ss_pred             cCCceEEEEEECCCC--cEEe
Q 046684          216 SARAYSVIGFDIESN--TWRE  234 (373)
Q Consensus       216 g~~~~~i~~yd~~~~--~w~~  234 (373)
                      ......+.++|++++  .|+.
T Consensus       205 ~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         205 DGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             CCCcceEEEEEccCCcEeeee
Confidence            211347999999866  4763

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=82.73  E-value=32  Score=29.96  Aligned_cols=144  Identities=12%  Similarity=0.076  Sum_probs=78.4

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeE--EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAV--GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~--~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ++.|....|   ......||..+++-...  ..    .|+.  ..+.-..+ +     .+.|+-|+.+          ..
T Consensus       156 D~~ilT~SG---D~TCalWDie~g~~~~~--f~----GH~gDV~slsl~p~-~-----~ntFvSg~cD----------~~  210 (343)
T KOG0286|consen  156 DNHILTGSG---DMTCALWDIETGQQTQV--FH----GHTGDVMSLSLSPS-D-----GNTFVSGGCD----------KS  210 (343)
T ss_pred             CCceEecCC---CceEEEEEcccceEEEE--ec----CCcccEEEEecCCC-C-----CCeEEecccc----------cc
Confidence            666666666   57788999999875431  11    1221  12221111 2     7889998876          45


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCC-CceeEEE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL-EFATLVS  250 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~-~~~~~~~  250 (373)
                      ..++|.+.+.=.  +.++.     +....+.-..+-+|.-+.. |......-.||+..++=-.+-...+... .......
T Consensus       211 aklWD~R~~~c~--qtF~g-----hesDINsv~ffP~G~afat-GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS  282 (343)
T KOG0286|consen  211 AKLWDVRSGQCV--QTFEG-----HESDINSVRFFPSGDAFAT-GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS  282 (343)
T ss_pred             eeeeeccCccee--Eeecc-----cccccceEEEccCCCeeee-cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence            677887766422  22211     1112222222335666666 5667778889998875433312221111 1122344


Q ss_pred             ECCEEEEEEeecCCceEEEEe
Q 046684          251 RNQKLTLIGGTCGGDACVWEL  271 (373)
Q Consensus       251 ~~g~l~~~gg~~~~~~~i~~~  271 (373)
                      .-|+|.+.|. .+....+|+.
T Consensus       283 ~SGRlLfagy-~d~~c~vWDt  302 (343)
T KOG0286|consen  283 KSGRLLFAGY-DDFTCNVWDT  302 (343)
T ss_pred             ccccEEEeee-cCCceeEeec
Confidence            5799888874 4445688875

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=82.35  E-value=36  Score=30.37  Aligned_cols=243  Identities=11%  Similarity=0.063  Sum_probs=116.4

Q ss_pred             CcEEEEeeCCCC--ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           94 GSFLLLRPINST--ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        94 ~g~l~~~gg~~~--~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      +..+|.+.....  .-.-+.+|+..++.+.+......-..++-..++..         ++.+....+.         ...
T Consensus        51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~---------g~~vf~AnY~---------~g~  112 (346)
T COG2706          51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED---------GRFVFVANYH---------SGS  112 (346)
T ss_pred             CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC---------CCEEEEEEcc---------Cce
Confidence            346888766522  23456678887887776544433333332223211         3333333332         245


Q ss_pred             EEEEECCCC-c-eeeecCCCccccccc----eeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccC-CCCCCC
Q 046684          172 VEMYDSRHD-A-WQIIGSMPVEFAVRL----TVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAP-MADRLE  244 (373)
Q Consensus       172 ~~~yd~~~~-~-W~~~~~~p~~~~~~~----~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~-~p~~~~  244 (373)
                      +-+|-..++ . |..+...-.....|+    .+..+.....-+|++.+.......+|..|+.+.+..+..... .+..-.
T Consensus       113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G  192 (346)
T COG2706         113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG  192 (346)
T ss_pred             EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence            566655442 2 322211100000001    011222222335655544444567899999987666544111 111111


Q ss_pred             ceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684          245 FATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG  320 (373)
Q Consensus       245 ~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  320 (373)
                      -.++ .--++++..+-..-...+.+|+++.  ...+.+.+..   ||.. +.   +.. ......+...|..||+.+...
T Consensus       193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~--~~g~~~~lQ~i~tlP~d-F~---g~~-~~aaIhis~dGrFLYasNRg~  265 (346)
T COG2706         193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNP--AVGKFEELQTIDTLPED-FT---GTN-WAAAIHISPDGRFLYASNRGH  265 (346)
T ss_pred             cceEEEcCCCcEEEEEeccCCEEEEEEEcC--CCceEEEeeeeccCccc-cC---CCC-ceeEEEECCCCCEEEEecCCC
Confidence            1233 3346665443334444589999987  5677777766   4433 11   110 011222223466888888777


Q ss_pred             ccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccccccee
Q 046684          321 LGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACAC  369 (373)
Q Consensus       321 ~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~  369 (373)
                      +.|.+|.....++  +-..+...+..+..      .+.|.|.|+=+=++
T Consensus       266 dsI~~f~V~~~~g--~L~~~~~~~teg~~------PR~F~i~~~g~~Li  306 (346)
T COG2706         266 DSIAVFSVDPDGG--KLELVGITPTEGQF------PRDFNINPSGRFLI  306 (346)
T ss_pred             CeEEEEEEcCCCC--EEEEEEEeccCCcC------CccceeCCCCCEEE
Confidence            7888886663256  44444444443332      23466666543333

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=82.32  E-value=39  Score=30.71  Aligned_cols=140  Identities=10%  Similarity=0.022  Sum_probs=74.7

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV  249 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~  249 (373)
                      ..+.++|..|+.=-.--..|.        .........||.+.+.+ ....+|-++|+.+++-..........+....+.
T Consensus       154 n~v~iWnv~tgeali~l~hpd--------~i~S~sfn~dGs~l~Tt-ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLDHPD--------MVYSMSFNRDGSLLCTT-CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             ceEEEEeccCCceeeecCCCC--------eEEEEEeccCCceeeee-cccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence            467778887776211111221        11112234567777663 456789999999988665521222233333444


Q ss_pred             EECCEEEEEEeecCC--ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE-ecCCEEEEEEcCCccEEEE
Q 046684          250 SRNQKLTLIGGTCGG--DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-AGNGAICLYREVGLGMIIW  326 (373)
Q Consensus       250 ~~~g~l~~~gg~~~~--~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~y  326 (373)
                      .-+|.|+..|...-.  .+.+|+++...+...-..+..-..-.             +.+. ...+.||+.|-+++.|-.|
T Consensus       225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-------------~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-------------LPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             eccCceeeeccccccccceeccCcccccCcceeEEeccCCceE-------------EeeecCCCCEEEEEecCCcceEEE
Confidence            556665554433222  27789887632222222222211111             1122 2346899999888889999


Q ss_pred             EccccCC
Q 046684          327 REDEDKR  333 (373)
Q Consensus       327 d~~~~~~  333 (373)
                      ...  ..
T Consensus       292 Eit--~d  296 (472)
T KOG0303|consen  292 EIT--NE  296 (472)
T ss_pred             Eec--CC
Confidence            998  55

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=81.81  E-value=43  Score=30.93  Aligned_cols=86  Identities=10%  Similarity=0.024  Sum_probs=49.5

Q ss_pred             ceEEECCEEEEEEcCCceEEEEEECCCCcEEecc-c-----CC--CCC--CCceeEEEECCEEEEEEeecCCceEEEEee
Q 046684          203 ESVCTRGMLYWITSARAYSVIGFDIESNTWRELS-A-----PM--ADR--LEFATLVSRNQKLTLIGGTCGGDACVWELS  272 (373)
Q Consensus       203 ~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~-~-----~~--p~~--~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~  272 (373)
                      +++++|..=|+. |.....|.-.++.+.+---+. .     +.  |..  .--.+++++.+.=.++.|.....+.+|...
T Consensus       332 cv~~In~~Hfvs-GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  332 CVAFINDEHFVS-GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             eEEEecccceee-ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence            456677666666 455666666666554321110 0     11  111  122356666676666666666778999998


Q ss_pred             cCCCCCCeEEEEeechhhh
Q 046684          273 EGGDDDIWCLIEKVPIEMG  291 (373)
Q Consensus       273 ~~~~~~~W~~v~~~p~~~~  291 (373)
                      +  .-..-..+..+|...+
T Consensus       411 ~--g~r~i~~l~~ls~~Gf  427 (479)
T KOG0299|consen  411 D--GLRAINLLYSLSLVGF  427 (479)
T ss_pred             C--CccccceeeecccccE
Confidence            7  3346777777775544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.77  E-value=59  Score=33.07  Aligned_cols=131  Identities=12%  Similarity=0.075  Sum_probs=68.1

Q ss_pred             eEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCC-----CCCeEEEEEcCCCC-------CCCCCceEEEE
Q 046684           89 PVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSR-----TNPAVGIVMEGPAQ-------HGPFPNFRIYV  154 (373)
Q Consensus        89 ~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~-----~~~~~~~~~~~~~~-------~~~~~~~kl~~  154 (373)
                      .-...+|.||+...   ...++.+|+.|++  |+.-+..+...     .+..++....+...       ....++.+||+
T Consensus       189 TPlvvgg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~  265 (764)
T TIGR03074       189 TPLKVGDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL  265 (764)
T ss_pred             CCEEECCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence            34567999999876   5688999999876  76654433211     11122222211100       00012256665


Q ss_pred             EeccCCCCCCCCcccceEEEEECCCCc--eeeec--------CCCccccccceeccCCceEEECCEEEEEEc--------
Q 046684          155 AGGMSDEPRGGATYESMVEMYDSRHDA--WQIIG--------SMPVEFAVRLTVWTPNESVCTRGMLYWITS--------  216 (373)
Q Consensus       155 ~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~--------~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg--------  216 (373)
                      -. .+          ..+...|.+|++  |+--.        .++..  .+.......+.++.+|.+++-+.        
T Consensus       266 ~T-~D----------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~--~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~  332 (764)
T TIGR03074       266 PT-SD----------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTT--PPGYYYPTSPPLVAGTTVVIGGRVADNYSTD  332 (764)
T ss_pred             ec-CC----------CeEEEEECCCCCEEEEecCCCceeeecccCcC--CCcccccccCCEEECCEEEEEeccccccccc
Confidence            32 22          246667776655  54211        11110  00111233455778888887531        


Q ss_pred             CCceEEEEEECCCCc--EEec
Q 046684          217 ARAYSVIGFDIESNT--WREL  235 (373)
Q Consensus       217 ~~~~~i~~yd~~~~~--w~~~  235 (373)
                      .....|.+||.++++  |+.-
T Consensus       333 ~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       333 EPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             CCCcEEEEEECCCCcEeeEEe
Confidence            114679999999874  6643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.32  E-value=36  Score=29.92  Aligned_cols=75  Identities=8%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             EEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCccc
Q 046684          257 LIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWE  336 (373)
Q Consensus       257 ~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~  336 (373)
                      ++.|.++..+.||++..    ++ +.+..+......          .-..+..|+.|..+-..+..+-.||+.  .+  .
T Consensus       371 vVSgSDDrTvKvWdLrN----MR-splATIRtdS~~----------NRvavs~g~~iIAiPhDNRqvRlfDln--G~--R  431 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRN----MR-SPLATIRTDSPA----------NRVAVSKGHPIIAIPHDNRQVRLFDLN--GN--R  431 (481)
T ss_pred             eeecCCCceEEEeeecc----cc-CcceeeecCCcc----------ceeEeecCCceEEeccCCceEEEEecC--CC--c
Confidence            44556666689999975    22 333333221110          234455677888888888899999998  66  5


Q ss_pred             EEEecccccCCCCc
Q 046684          337 WVWVGGCCLTGGKQ  350 (373)
Q Consensus       337 W~~~~~~~~~~~~~  350 (373)
                      --++|.....+++.
T Consensus       432 laRlPrtsRqgHrR  445 (481)
T KOG0300|consen  432 LARLPRTSRQGHRR  445 (481)
T ss_pred             cccCCcccccccce
Confidence            44444444444443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=81.10  E-value=19  Score=31.42  Aligned_cols=100  Identities=10%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe--
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK--  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~--  285 (373)
                      +|...+. |...+.+-.+|+++++-..+ .....+......+.....-+++.|.-+..+..|++..    .  ..+..  
T Consensus        83 dgskVf~-g~~Dk~~k~wDL~S~Q~~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~----~--~pv~t~~  154 (347)
T KOG0647|consen   83 DGSKVFS-GGCDKQAKLWDLASGQVSQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS----S--NPVATLQ  154 (347)
T ss_pred             CCceEEe-eccCCceEEEEccCCCeeee-eecccceeEEEEecCCCcceeEecccccceeecccCC----C--Ceeeeee
Confidence            3544444 35677888999999988888 3332332223333333333777776666689999864    2  23333  


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ||..              ..+.....-+.+++-....|.+|+++
T Consensus       155 LPeR--------------vYa~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  155 LPER--------------VYAADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             ccce--------------eeehhccCceeEEEecCCcEEEEEcC
Confidence            4432              22333334455555555567778776

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=80.85  E-value=17  Score=30.96  Aligned_cols=58  Identities=19%  Similarity=0.242  Sum_probs=33.7

Q ss_pred             eEEECCEEEEEE-cC---Cc-eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEee
Q 046684          204 SVCTRGMLYWIT-SA---RA-YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGT  261 (373)
Q Consensus       204 ~~~~~g~ly~~g-g~---~~-~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~  261 (373)
                      +-+.+|+||+.. |.   .. ..+..=+...+.|+.+..|-..+....-.+..++.||++|..
T Consensus       196 vkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE  258 (367)
T PF12217_consen  196 VKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE  258 (367)
T ss_dssp             EEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred             hhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence            346899999997 21   22 345555666778998844433444444567789999999864

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]

Probab=80.83  E-value=34  Score=29.05  Aligned_cols=155  Identities=14%  Similarity=0.101  Sum_probs=82.4

Q ss_pred             CCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc---EEecccCC-----CCC---CCcee
Q 046684          179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT---WRELSAPM-----ADR---LEFAT  247 (373)
Q Consensus       179 ~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~---w~~~~~~~-----p~~---~~~~~  247 (373)
                      .+.|...-.+|       ....+..-++.+|.+|.-. .....|..||++++.   +..++...     |-.   .....
T Consensus        55 ~~~~~~~~~lp-------~~~~gTg~VVynGs~yynk-~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD  126 (249)
T KOG3545|consen   55 RGRKAEKYRLP-------YSWDGTGHVVYNGSLYYNK-AGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDID  126 (249)
T ss_pred             ccCcceEEeCC-------CCccccceEEEcceEEeec-cCCcceEEEEeecceeeeeeeccccccCCCcccccCCCcccc
Confidence            45566666664       2334555689999999984 456779999999853   34441111     000   11234


Q ss_pred             EEEECCEEEEEEeecCCc--eEEEEeecC--CCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC---
Q 046684          248 LVSRNQKLTLIGGTCGGD--ACVWELSEG--GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG---  320 (373)
Q Consensus       248 ~~~~~g~l~~~gg~~~~~--~~i~~~~~~--~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  320 (373)
                      +++-..-|+++-...+..  +.+=+++..  .....|..-  ++...            ...++..=|.+|++....   
T Consensus       127 ~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~k~~------------~~~aF~iCGvLY~v~S~~~~~  192 (249)
T KOG3545|consen  127 LAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LPKRS------------AGNAFMICGVLYVVHSYNCTH  192 (249)
T ss_pred             ceecccceeEEecccccCCcEEeeccCHHHhheeeeeccc--cCCCC------------cCceEEEeeeeEEEeccccCC
Confidence            555566677775544333  333444431  122344321  22211            244455556788886432   


Q ss_pred             ccE-EEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684          321 LGM-IIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS  364 (373)
Q Consensus       321 ~~~-~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~  364 (373)
                      ..| ..||..  ++  +=+ -..+|.+..-.    ....+.|.|+
T Consensus       193 ~~i~yaydt~--~~--~~~-~~~ipf~N~y~----~~~~idYNP~  228 (249)
T KOG3545|consen  193 TQISYAYDTT--TG--TQE-RIDLPFPNPYS----YATMIDYNPR  228 (249)
T ss_pred             ceEEEEEEcC--CC--cee-cccccccchhh----hhhccCCCcc
Confidence            223 689999  88  543 23344444432    3445666664

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=80.34  E-value=38  Score=29.28  Aligned_cols=130  Identities=10%  Similarity=0.086  Sum_probs=73.6

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--C-CEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--N-QKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~-g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      ++.-.+- |.+.+.|.-+|...+.=-.+.....  +.-...+..  + ...+++.+..+..+.+|+++.      -+...
T Consensus       116 dn~qivS-GSrDkTiklwnt~g~ck~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~  186 (315)
T KOG0279|consen  116 DNRQIVS-GSRDKTIKLWNTLGVCKYTIHEDSH--REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRT  186 (315)
T ss_pred             CCceeec-CCCcceeeeeeecccEEEEEecCCC--cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhh
Confidence            3444444 5667788888887776555522211  322222222  2 255666555555589999975      12222


Q ss_pred             eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS  364 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~  364 (373)
                      ..+..         ........+..+|.++..||..+++..+|+.  .+    +.+.   .....    .....++|.|+
T Consensus       187 ~~~gh---------~~~v~t~~vSpDGslcasGgkdg~~~LwdL~--~~----k~ly---sl~a~----~~v~sl~fspn  244 (315)
T KOG0279|consen  187 TFIGH---------SGYVNTVTVSPDGSLCASGGKDGEAMLWDLN--EG----KNLY---SLEAF----DIVNSLCFSPN  244 (315)
T ss_pred             ccccc---------cccEEEEEECCCCCEEecCCCCceEEEEEcc--CC----ceeE---eccCC----CeEeeEEecCC
Confidence            22221         1122455566699999999999999999999  66    2222   22222    13456778887


Q ss_pred             ccce
Q 046684          365 LACA  368 (373)
Q Consensus       365 l~~~  368 (373)
                      =..+
T Consensus       245 rywL  248 (315)
T KOG0279|consen  245 RYWL  248 (315)
T ss_pred             ceeE
Confidence            4433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	373
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	7e-11
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-07
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	7e-09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-07
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	9e-04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-08
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	6e-05
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	5e-04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	2e-06
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 26/158 (16%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
           NP    +  L  L V R+  A  +V              +Y  GG ++ P G     + +
Sbjct: 45  NPSNGTWLRLADLQVPRSGLAGCVV-----------GGLLYAVGGRNNSPDGNTDSSA-L 92

Query: 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLY----WITSARAYSVIGFDI 227
           + Y+   + W     M V    R  +      V    G +Y            SV  ++ 
Sbjct: 93  DCYNPMTNQWSPCAPMSVP---RNRI-----GVGVIDGHIYAVGGSHGCIHHNSVERYEP 144

Query: 228 ESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD 265
           E + W  + APM  R     +   N+ L  +GG  G +
Sbjct: 145 ERDEWHLV-APMLTRRIGVGVAVLNRLLYAVGGFDGTN 181

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 34/160 (21%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
            P   ++  +  +   R    V  V+             +Y  GG       G    +  
Sbjct: 143 EPERDEWHLVAPMLTRRIGVGVA-VLNR----------LLYAVGG-----FDGTNRLNSA 186

Query: 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT---RGMLYWI----TSARAYSVIGF 225
           E Y    + W++I +M           T             +Y         +  SV  +
Sbjct: 187 ECYYPERNEWRMITAMN----------TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERY 236

Query: 226 DIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD 265
           D+E+ TW  + APM  R     +     ++ ++GG  G  
Sbjct: 237 DVETETWTFV-APMKHRRSALGITVHQGRIYVLGGYDGHT 275

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 45/188 (23%)

Query: 65  CYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPI-------NSTILQLVLC-NPFT 116
            Y   P  D+WH+++    P        +G  +L R +        +  L    C  P  
Sbjct: 141 RY--EPERDEWHLVA----PMLT-RRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER 193

Query: 117 RQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176
            ++R +  +N  R+   V  V+             IY AGG       G    + VE YD
Sbjct: 194 NEWRMITAMNTIRSGAGVC-VLHN----------CIYAAGG-----YDGQDQLNSVERYD 237

Query: 177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLY----WITSARAYSVIGFDIESNT 231
              + W  +  M      R  +      +   +G +Y    +       SV  +D +++T
Sbjct: 238 VETETWTFVAPMKHR---RSAL-----GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289

Query: 232 WRELSAPM 239
           W E+   M
Sbjct: 290 WSEV-TRM 296

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 16/78 (20%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
           +  T  + ++  +   R+   +  V +G          RIYV GG       G T+   V
Sbjct: 237 DVETETWTFVAPMKHRRSALGI-TVHQG----------RIYVLGGYD-----GHTFLDSV 280

Query: 173 EMYDSRHDAWQIIGSMPV 190
           E YD   D W  +  M  
Sbjct: 281 ECYDPDTDTWSEVTRMTS 298

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 28/134 (20%)

Query: 144 HGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPV---EFAVRLTVWT 200
           H P     IY AGG   +        S +E Y+  +  W  +  + V     A       
Sbjct: 19  HAPKVGRLIYTAGGYFRQSL------SYLEAYNPSNGTWLRLADLQVPRSGLAG------ 66

Query: 201 PNESVCTRGMLY--------WITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRN 252
                   G+LY           +  + ++  ++  +N W    APM+       +   +
Sbjct: 67  ----CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC-APMSVPRNRIGVGVID 121

Query: 253 QKLTLIGGTCGGDA 266
             +  +GG+ G   
Sbjct: 122 GHIYAVGGSHGCIH 135

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 51/315 (16%), Positives = 105/315 (33%), Gaps = 58/315 (18%)

Query: 62  GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSI----------GSFLLLRPINSTILQLVL 111
                 ++P+ ++ ++ +L     P    S +          G ++     +  +     
Sbjct: 23  DTAAVAYDPMENECYLTALA-EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFF 81

Query: 112 C-NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES 170
             +  + ++  LP L  +R    +G  ++           +IYV  G   +         
Sbjct: 82  QLDNVSSEWVGLPPLPSARCLFGLG-EVDD----------KIYVVAGKDLQ---TEASLD 127

Query: 171 MVEMYDSRHDAWQIIGSMPVE-FAVRLTVWTPNESVCTRGMLYWI---TSARAY--SVIG 224
            V  YD     W  + ++P++ +   +            GM+Y +   T  +     V  
Sbjct: 128 SVLCYDPVAAKWSEVKNLPIKVYGHNVISH--------NGMIYCLGGKTDDKKCTNRVFI 179

Query: 225 FDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDA--CVWELSEGGDDDIWCL 282
           ++ +   W++L APM        +     K+ + GG         V         + W +
Sbjct: 180 YNPKKGDWKDL-APMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDL--KTNKWEV 236

Query: 283 IEKVPIEMGMRLSGGKASWGGTRCAAG--NGAICLYREVGLGMI--IWREDEDKRKWEWV 338
           + + P E   R S    S  G+  A G         +E     +  IW+ ++DK++W  +
Sbjct: 237 MTEFPQE---RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293

Query: 339 ------WVGGCCLTG 347
                   G  CL  
Sbjct: 294 LKEIRYASGASCLAT 308

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 29/174 (16%), Positives = 46/174 (26%), Gaps = 29/174 (16%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
           +  + ++     L        V                 +YV GG            + +
Sbjct: 123 DRLSFKWGESDPLPYVVYGHTVL-SHMD----------LVYVIGGKGS----DRKCLNKM 167

Query: 173 EMYDSRHDAWQIIGSMPVE-FAVRLTVWTPNESVCTRGMLY----WITSARAYSVIGFDI 227
            +YD +   W+ +  M         TV          G +        +    S   + I
Sbjct: 168 CVYDPKKFEWKELAPMQTARSLFGATVH--------DGRIIVAAGVTDTGLTSSAEVYSI 219

Query: 228 ESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWC 281
             N W              +LVS    L  IGG    +    EL     +DIW 
Sbjct: 220 TDNKWAPF-EAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWR 272

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 36/135 (26%)

Query: 151 RIYVAGGMSDEPRG-GATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-R 208
           +++VAGG+            +    +D     W  +  +P     R         +    
Sbjct: 47  QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP---RCLF-----GLGEAL 98

Query: 209 GMLYWITSARAYSVIG----------------FDIESNTWRELSAPMADRLEFATLVSRN 252
             +Y         V+G                +D  S  W E   P+   +   T++S  
Sbjct: 99  NSIY---------VVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYVVYGHTVLSHM 148

Query: 253 QKLTLIGGTCGGDAC 267
             + +IGG      C
Sbjct: 149 DLVYVIGGKGSDRKC 163

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 57/224 (25%)

Query: 65  CYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPI--------NSTILQLVLC-NPF 115
           CY  + +S KW        P P   V        +  +        +   L  +   +P 
Sbjct: 121 CY--DRLSFKWGESD----PLP-YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK 173

Query: 116 TRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMY 175
             +++ L  +  +R+      V +G          RI VA G            S  E+Y
Sbjct: 174 KFEWKELAPMQTARSLFGAT-VHDG----------RIIVAAG-----VTDTGLTSSAEVY 217

Query: 176 DSRHDAWQIIGSMPVE-FAVRLTVWTPNESVCTRGMLY-------------WITSARAYS 221
               + W    + P E  ++ L            G LY              +       
Sbjct: 218 SITDNKWAPFEAFPQERSSLSLVSL--------VGTLYAIGGFATLETESGELVPTELND 269

Query: 222 VIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD 265
           +  ++ E   W  +          AT +    +L ++  T   +
Sbjct: 270 IWRYNEEEKKWEGV-LREIAYAAGATFL--PVRLNVLRLTKMAE 310

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 28/157 (17%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
           N  + ++ ++  +N  R++  VG V+ G           +Y  GG            S V
Sbjct: 130 NIKSNEWFHVAPMNTRRSSVGVG-VVGG----------LLYAVGGYDVA---SRQCLSTV 175

Query: 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLY----WITSARAYSVIGFDI 227
           E Y++  + W  I  M      R         V     +LY            SV  +D 
Sbjct: 176 ECYNATTNEWTYIAEMSTR---RSGA-----GVGVLNNLLYAVGGHDGPLVRKSVEVYDP 227

Query: 228 ESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG 264
            +N WR++ A M      A + + N  L ++GG  G 
Sbjct: 228 TTNAWRQV-ADMNMCRRNAGVCAVNGLLYVVGGDDGS 263

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 30/157 (19%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
           +    ++  +  L   R    +  +              ++  GG       G+     V
Sbjct: 36  DFKEERWHQVAELPSRRCRAGMVYM-----------AGLVFAVGG-----FNGSLRVRTV 79

Query: 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLY----WITSARAYSVIGFDI 227
           + YD   D W  + +M      R T+           G+LY    +  S    SV  ++I
Sbjct: 80  DSYDPVKDQWTSVANMRDR---RSTL-----GAAVLNGLLYAVGGFDGSTGLSSVEAYNI 131

Query: 228 ESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG 264
           +SN W  + APM  R     +      L  +GG    
Sbjct: 132 KSNEWFHV-APMNTRRSSVGVGVVGGLLYAVGGYDVA 167

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 30/159 (18%)

Query: 103 NSTILQLVLC-NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDE 161
           +   L  V C N  T ++ Y+  ++  R+   VG V+             +Y  GG    
Sbjct: 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNN----------LLYAVGG---- 212

Query: 162 PRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLY----WITS 216
              G      VE+YD   +AW+ +  M +    R         VC   G+LY       S
Sbjct: 213 -HDGPLVRKSVEVYDPTTNAWRQVADMNMC---RRNA-----GVCAVNGLLYVVGGDDGS 263

Query: 217 ARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKL 255
               SV  ++  ++ W  +S+ M+    +A +   +++L
Sbjct: 264 CNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 24/116 (20%)

Query: 152 IYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPV---EFAVRLTVWTPNESVCTR 208
           + V GG + +          VE YD + + W  +  +P       +          V   
Sbjct: 18  MVVVGGQAPKAI------RSVECYDFKEERWHQVAELPSRRCRAGM----------VYMA 61

Query: 209 GMLY----WITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGG 260
           G+++    +  S R  +V  +D   + W  + A M DR         N  L  +GG
Sbjct: 62  GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-ANMRDRRSTLGAAVLNGLLYAVGG 116

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 39/215 (18%), Positives = 69/215 (32%), Gaps = 43/215 (20%)

Query: 64  CCYVHNPVSDKWHVLSLDFLPYPVRP--VSSIGSFLLLRPI---NSTILQLVLC-NPFTR 117
            C   NP    W  +         R        + + +  +       ++ + C N    
Sbjct: 25  SCRYFNPKDYSWTDIRC--PFEKRRDAACVFWDNVVYI--LGGSQLFPIKRMDCYNVVKD 80

Query: 118 QFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDS 177
            +         R + A     EG          +IY +GG       G +   + E YD+
Sbjct: 81  SWYSKLGPPTPRDSLAAC-AAEG----------KIYTSGGSEV----GNSALYLFECYDT 125

Query: 178 RHDAWQIIGSMPVE-FAVRLTVWTPNESVCTRGMLY--------WITSARAYSVIGFDIE 228
           R ++W    SM  +  +  +            G++Y         ++     S   +D  
Sbjct: 126 RTESWHTKPSMLTQRCSHGMVEA--------NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177

Query: 229 SNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG 263
           + TW EL  PM +  +   LV    K+  +GG  G
Sbjct: 178 TETWTEL-CPMIEARKNHGLVFVKDKIFAVGGQNG 211

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 32/166 (19%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
           NP    +  +      R + A               +  +Y+ GG    P         +
Sbjct: 30  NPKDYSWTDIRCPFEKRRDAACVFW-----------DNVVYILGGSQLFP------IKRM 72

Query: 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWI-----TSARAYSVIGFD 226
           + Y+   D+W      P     R ++     + C   G +Y        ++  Y    +D
Sbjct: 73  DCYNVVKDSWYSKLGPPTP---RDSL-----AACAAEGKIYTSGGSEVGNSALYLFECYD 124

Query: 227 IESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELS 272
             + +W      M  +     +V  N  + + GG+ G +     L+
Sbjct: 125 TRTESWHTK-PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN 169

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 38/169 (22%)

Query: 103 NSTILQLVLC-NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDE 161
           +  +L      +P T  +  L  +  +R N  +   ++           +I+  GG    
Sbjct: 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLV-FVKD----------KIFAVGG---- 208

Query: 162 PRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLY----WITS 216
            + G      VE YD + + W+++  MP +    +TV            ++Y    +   
Sbjct: 209 -QNGLGGLDNVEYYDIKLNEWKMVSPMPWK---GVTV-----KCAAVGSIVYVLAGFQGV 259

Query: 217 ARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD 265
            R   ++ ++ E++ W   S   A  +    +         +  TCG +
Sbjct: 260 GRLGHILEYNTETDKWVANSKVRAFPVTSCLIC--------VVDTCGAN 300

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 26/123 (21%)

Query: 151 RIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPV---EFAVRLTVWTPNESVCT 207
           RI + GG         +       ++ +  +W  I        + A           V  
Sbjct: 14  RIALFGG---------SQPQSCRYFNPKDYSWTDIRCPFEKRRDAAC----------VFW 54

Query: 208 RGMLYWI---TSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG 264
             ++Y +          +  +++  ++W           +     +   K+   GG+  G
Sbjct: 55  DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK-LGPPTPRDSLAACAAEGKIYTSGGSEVG 113

Query: 265 DAC 267
           ++ 
Sbjct: 114 NSA 116

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 38/258 (14%), Positives = 71/258 (27%), Gaps = 46/258 (17%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
               +++  L        + A    ++G           +YV GG+     G     + V
Sbjct: 39  QAKDKKWTALAAFPGGPRDQATSAFIDG----------NLYVFGGIGKNSEGLTQVFNDV 88

Query: 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPN----------------------------ES 204
             Y+ + ++W  + S           +  N                             +
Sbjct: 89  HKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTA 148

Query: 205 VCTRGMLYWITSARAY----SVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGG 260
           +      Y+   A  Y     ++ FD  +  W             A +V++  K  LI G
Sbjct: 149 IDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLING 208

Query: 261 TCGGD---ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR 317
                     V+EL   G++  W  +  V    G    G       +   AG       R
Sbjct: 209 EAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAGGFAGISNDSLIFAGGAGFKGSR 267

Query: 318 EVGLGMIIWREDEDKRKW 335
           E       +  +  K+ +
Sbjct: 268 ENYQNGKNYAHEGLKKSY 285

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 41/193 (21%)

Query: 122 LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA 181
           LP   V   +    I            N  +Y+  G       G  +  +     ++   
Sbjct: 3   LPETPVPFKSGTGAID-----------NDTVYIGLG-----SAGTAWYKLD--TQAKDKK 44

Query: 182 WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWI--------TSARAY-SVIGFDIESNTW 232
           W  + + P     + T    +      G LY             + +  V  ++ ++N+W
Sbjct: 45  WTALAAFPGGPRDQATSAFID------GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98

Query: 233 RELSAPMADRLEFATLVSRNQKLTLIGGTCGG--DACVWELSEGGDDDIWCLIEKVPIEM 290
            +L +     +        N K  + GG      +    +L+E G D     I+K    +
Sbjct: 99  VKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD--STAIDK----I 152

Query: 291 GMRLSGGKASWGG 303
                  KA    
Sbjct: 153 NAHYFDKKAEDYF 165

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 46/223 (20%)

Query: 58  TRNRGLCCYVH--NPVSDKWHVLSLDFLPYPVRP--VSSIGSFLLLRPI----NSTILQL 109
              +     V   +P + +W  L    +    R     S+   + +  I      + L  
Sbjct: 24  GSQQSPIDVVEKYDPKTQEWSFLPS--ITRKRRYVASVSLHDRIYV--IGGYDGRSRLSS 79

Query: 110 VLC-NPFTRQF---RYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG 165
           V C +    +      +  +NV R        +             IYV+GG       G
Sbjct: 80  VECLDYTADEDGVWYSVAPMNVRRGLAGAT-TLGD----------MIYVSGG-----FDG 123

Query: 166 ATYESMVEMYDSRHDAWQIIGSMPVE-FAVRLTVWTPNESVCTRGMLY----WITSARAY 220
           +   + +E YD   D W ++G M        L V          G++Y    +       
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--------SGVIYCLGGYDGLNILN 175

Query: 221 SVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG 263
           SV  +D  +  W  +  PMA +   A +   N  + ++GG  G
Sbjct: 176 SVEKYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDG 217

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 39/161 (24%), Positives = 58/161 (36%), Gaps = 33/161 (20%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
           +P T+++ +LP +   R   A   +           + RIYV GG       G +  S V
Sbjct: 37  DPKTQEWSFLPSITRKRRYVASVSL-----------HDRIYVIGGYD-----GRSRLSSV 80

Query: 173 EMYDSRHD---AWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLY----WITSARAYSVIG 224
           E  D   D    W  +  M V    R           T   M+Y    +  S R  S+  
Sbjct: 81  ECLDYTADEDGVWYSVAPMNVR---RGLA-----GATTLGDMIYVSGGFDGSRRHTSMER 132

Query: 225 FDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD 265
           +D   + W  L   M    E A LV  +  +  +GG  G +
Sbjct: 133 YDPNIDQWSML-GDMQTAREGAGLVVASGVIYCLGGYDGLN 172

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
           N  T  +  +  +   R       V+ G          R+Y   G       G +  S +
Sbjct: 228 NIRTDSWTTVTSMTTPRCYVGAT-VLRG----------RLYAIAGYD-----GNSLLSSI 271

Query: 173 EMYDSRHDAWQIIGSMPV 190
           E YD   D+W+++ SM  
Sbjct: 272 ECYDPIIDSWEVVTSMGT 289

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 40/198 (20%), Positives = 65/198 (32%), Gaps = 45/198 (22%)

Query: 65  CYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPI-------NSTILQLVLC-NPFT 116
            Y  +P  D+W +L               G  +    I          IL  V   +P T
Sbjct: 132 RY--DPNIDQWSMLG----DMQT-AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHT 184

Query: 117 RQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176
             +  +  +   R+   V  ++             IYV GG       G  + S VE Y+
Sbjct: 185 GHWTNVTPMATKRSGAGVA-LLND----------HIYVVGG-----FDGTAHLSSVEAYN 228

Query: 177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLY----WITSARAYSVIGFDIESNT 231
            R D+W  + SM      R  V          RG LY    +  ++   S+  +D   ++
Sbjct: 229 IRTDSWTTVTSMTTP---RCYV-----GATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280

Query: 232 WRELSAPMADRLEFATLV 249
           W  +   M  +   A + 
Sbjct: 281 WEVV-TSMGTQRCDAGVC 297

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 2  WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAK 37
          W +L  ++L  IFS L    L +   VC  W+  A 
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 28/223 (12%), Positives = 60/223 (26%), Gaps = 20/223 (8%)

Query: 69  NPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPI-----NSTILQL-----VLCNPFTRQ 118
           +P S  W  L    +   +                      ++ Q      +     +  
Sbjct: 320 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 379

Query: 119 FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE-SMVEMYD- 176
                              M G A        +I   GG  D     AT    ++ + + 
Sbjct: 380 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 439

Query: 177 -SRHDAWQIIGSMPVEFAVRLTVWTPNESV-----CTRGMLYWITSARAYSVIGFDIESN 230
            +  +       +        +V  P+ S        RG+ +  ++      I +  E +
Sbjct: 440 GTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI-YVPEQD 498

Query: 231 TWRELSAPMADRLEFAT-LVSRNQKLTLIGGTCGGDACVWELS 272
           T+ + +     R+  +  L+  + ++   GG   GD       
Sbjct: 499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFD 541

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 2  WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHL-HSVSQHRRPAW 52
           + L +DV   I SFLSP  L +  S   +W+   +   L         P+W
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSW 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 42/135 (31%)

Query: 2   WSNLHLDVLAN-IFSFLSPDSLARAKSVCSHWHTCAKLYHLHSVSQHRR----PAWFLAL 56
             +L    L    +S +                     +HL ++    R       FL  
Sbjct: 461 SDDLIPPYLDQYFYSHIG--------------------HHLKNIEHPERMTLFRMVFLDF 500

Query: 57  -----PTRNRGLCCYVHNPVSDKWHVLSL--DFL----PYPVRPVSSIGSFL------LL 99
                  R+          + +    L     ++    P   R V++I  FL      L+
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 100 RPINSTILQLVLCNP 114
               + +L++ L   
Sbjct: 561 CSKYTDLLRIALMAE 575

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	373
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.97
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.97
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.97
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.97
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.93
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.22
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.18
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.08
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.87
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.3
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.1
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.06
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.97
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.87
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.85
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.77
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.71
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.65
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.61
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.46
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.42
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.42
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.38
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.37
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.35
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.32
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.26
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.24
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.2
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.2
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.17
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.17
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.16
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.13
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.11
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.1
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.1
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.07
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.06
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.99
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.92
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.91
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.89
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.88
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.84
3jro_A	753	Fusion protein of protein transport protein SEC13	96.83
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.78
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.74
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.7
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.67
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.66
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	96.66
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.63
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.61
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.57
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.54
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.43
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.43
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.43
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.42
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.4
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.38
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.33
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.32
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.32
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.32
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.31
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.3
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.3
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.29
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.29
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.23
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.2
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.18
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.17
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.17
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.16
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.15
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.14
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.14
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.12
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	96.1
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.09
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.05
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.05
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.0
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.99
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	95.92
2pm7_B	297	Protein transport protein SEC13, protein transport	95.84
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.82
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.81
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.8
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	95.67
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.66
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.64
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.54
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.5
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.49
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.47
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	95.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.46
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.46
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.45
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	95.44
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.41
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.39
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.33
2pm7_B	297	Protein transport protein SEC13, protein transport	95.31
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.3
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.3
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	95.19
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	95.16
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.15
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.15
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.12
3jro_A	753	Fusion protein of protein transport protein SEC13	95.03
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	94.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	94.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	94.8
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	94.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	94.74
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	94.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	94.71
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.69
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.68
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	94.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.6
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.51
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	94.5
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.48
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.47
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.45
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	94.41
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.38
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.38
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	94.37
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.33
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	94.32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	94.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	94.29
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	94.29
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	94.27
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.16
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.14
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.98
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	93.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	93.88
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	93.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	93.86
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	93.83
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.81
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	93.8
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	93.78
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	93.68
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	93.56
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	93.34
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	93.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	93.27
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.06
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	93.02
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	92.82
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	92.8
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	92.78
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	92.63
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	92.6
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	92.57
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.47
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	92.43
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	92.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	92.4
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	92.37
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	92.29
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	92.26
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	92.24
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	92.23
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	92.2
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	92.17
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	92.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.05
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	92.0
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	91.89
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	91.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	91.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	91.32
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	91.16
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	90.83
3ott_A	758	Two-component system sensor histidine kinase; beta	90.78
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	90.68
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	90.67
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	90.38
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	90.35
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	90.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	90.06
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	90.04
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	89.81
2p4o_A	306	Hypothetical protein; putative lactonase, structur	89.69
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	89.31
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	89.31
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	89.23
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	89.21
2p4o_A	306	Hypothetical protein; putative lactonase, structur	88.87
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	88.75
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	88.42
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	88.23
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	87.52
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	87.44
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	87.43
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.29
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	87.12
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	86.67
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	86.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	86.49
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	86.22
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	86.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	85.99
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	85.5
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	85.47
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	85.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	85.13
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	85.0
3ott_A	758	Two-component system sensor histidine kinase; beta	84.32
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	83.99
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	83.77
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	83.61
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	83.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	82.9
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	82.46
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	82.09
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	82.0
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	81.51
2kwv_A	48	RAD30 homolog B, DNA polymerase IOTA; ubiquitin-bi	81.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	80.2

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=261.77  Aligned_cols=258  Identities=19%  Similarity=0.248  Sum_probs=217.4

Q ss_pred             CCceEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC--CceEEEEEcCcccceeccCCCC
Q 046684           49 RPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS--TILQLVLCNPFTRQFRYLPLLN  126 (373)
Q Consensus        49 ~~~~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~--~~~~~~v~np~t~~w~~lp~~~  126 (373)
                      ....++++++......++.||+.+++|..++.++.+|..++++..++.||++||..  ..+++++|||.+++|+.++++|
T Consensus        10 ~~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           10 KHDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CCCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ccceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            34567888876656788999999999999988888999999999999999999964  3568999999999999999999


Q ss_pred             CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684          127 VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC  206 (373)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~  206 (373)
                      .+|..+++++++           ++||++||.+    ........+++||+.+++|+.++++|       ..+..++++.
T Consensus        90 ~~r~~~~~~~~~-----------~~iyv~GG~~----~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~  147 (306)
T 3ii7_A           90 TPRDSLAACAAE-----------GKIYTSGGSE----VGNSALYLFECYDTRTESWHTKPSML-------TQRCSHGMVE  147 (306)
T ss_dssp             SCCBSCEEEEET-----------TEEEEECCBB----TTBSCCCCEEEEETTTTEEEEECCCS-------SCCBSCEEEE
T ss_pred             ccccceeEEEEC-----------CEEEEECCCC----CCCcEeeeEEEEeCCCCceEeCCCCc-------CCcceeEEEE
Confidence            999999998886           9999999975    13445678999999999999999885       4567788899


Q ss_pred             ECCEEEEEEcCC--------ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc----eEEEEeecC
Q 046684          207 TRGMLYWITSAR--------AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD----ACVWELSEG  274 (373)
Q Consensus       207 ~~g~ly~~gg~~--------~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~----~~i~~~~~~  274 (373)
                      +++++|++||..        ...+++||+++++|+.+ .++|..+..+.++.++++||++||.....    +.+|++   
T Consensus       148 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~---  223 (306)
T 3ii7_A          148 ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL-CPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDI---  223 (306)
T ss_dssp             ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEET---
T ss_pred             ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC-CCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeC---
Confidence            999999998631        57899999999999999 68899999999999999999999976542    555555   


Q ss_pred             CCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC-----CccEEEEEccccCCcccEEEecccccCCC
Q 046684          275 GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV-----GLGMIIWREDEDKRKWEWVWVGGCCLTGG  348 (373)
Q Consensus       275 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~yd~~~~~~~~~W~~~~~~~~~~~  348 (373)
                       ++++|+.+..+|.++.           .+.++..+++||++||.     ...+++||++  ++  +|+.++..|.+..
T Consensus       224 -~~~~W~~~~~~p~~r~-----------~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~--~W~~~~~~~~~r~  286 (306)
T 3ii7_A          224 -KLNEWKMVSPMPWKGV-----------TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE--TD--KWVANSKVRAFPV  286 (306)
T ss_dssp             -TTTEEEECCCCSCCBS-----------CCEEEEETTEEEEEECBCSSSBCCEEEEEETT--TT--EEEEEEEEECCSC
T ss_pred             -CCCcEEECCCCCCCcc-----------ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCC--CC--eEEeCCCcccccc
Confidence             5599999988887654           36777789999999984     3679999999  99  9999987664433

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.7e-34  Score=256.29  Aligned_cols=255  Identities=18%  Similarity=0.223  Sum_probs=213.6

Q ss_pred             CceEEEEEecC--CCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCC----C---CceEEEEEcCccccee
Q 046684           50 PAWFLALPTRN--RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPIN----S---TILQLVLCNPFTRQFR  120 (373)
Q Consensus        50 ~~~l~~~~~~~--~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~----~---~~~~~~v~np~t~~w~  120 (373)
                      ...++++++..  ....++.||+.+++|..++.++.+|..++++..++.||++||.    .   ..+++++||+.+++|+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            45677777642  2367889999999999998888889888899999999999996    2   1357999999999999


Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceecc
Q 046684          121 YLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWT  200 (373)
Q Consensus       121 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~  200 (373)
                      +++++|.+|..+++++++           ++||++||..     .......+++||+.+++|+.++++|       ..+.
T Consensus       104 ~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~-----~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~  160 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGVID-----------GHIYAVGGSH-----GCIHHNSVERYEPERDEWHLVAPML-------TRRI  160 (308)
T ss_dssp             ECCCCSSCCBTCEEEEET-----------TEEEEECCEE-----TTEECCCEEEEETTTTEEEECCCCS-------SCCB
T ss_pred             ECCCCCcCccccEEEEEC-----------CEEEEEcCCC-----CCcccccEEEECCCCCeEeECCCCC-------cccc
Confidence            999999999999988886           9999999987     5566788999999999999999885       4567


Q ss_pred             CCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc----eEEEEee
Q 046684          201 PNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD----ACVWELS  272 (373)
Q Consensus       201 ~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~----~~i~~~~  272 (373)
                      .++++.++++||++||..    ...+++||+.+++|+.+ .++|.++..+.++.++++||++||.....    +.+|++ 
T Consensus       161 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~-  238 (308)
T 1zgk_A          161 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV-  238 (308)
T ss_dssp             SCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET-
T ss_pred             ceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-CCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeC-
Confidence            788889999999998643    56899999999999999 68888998899999999999999976432    455555 


Q ss_pred             cCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC-----CccEEEEEccccCCcccEEEecccccCC
Q 046684          273 EGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV-----GLGMIIWREDEDKRKWEWVWVGGCCLTG  347 (373)
Q Consensus       273 ~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~yd~~~~~~~~~W~~~~~~~~~~  347 (373)
                         ++++|+++..+|.++.           .+.++..+++||++||.     ...+++||++  ++  +|+.++..|.+.
T Consensus       239 ---~~~~W~~~~~~p~~r~-----------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~--~W~~~~~~p~~r  300 (308)
T 1zgk_A          239 ---ETETWTFVAPMKHRRS-----------ALGITVHQGRIYVLGGYDGHTFLDSVECYDPD--TD--TWSEVTRMTSGR  300 (308)
T ss_dssp             ---TTTEEEECCCCSSCCB-----------SCEEEEETTEEEEECCBCSSCBCCEEEEEETT--TT--EEEEEEECSSCC
T ss_pred             ---CCCcEEECCCCCCCcc-----------ceEEEEECCEEEEEcCcCCCcccceEEEEcCC--CC--EEeecCCCCCCc
Confidence               5599999998887654           36777789999999974     3579999999  99  999997765443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=253.20  Aligned_cols=249  Identities=16%  Similarity=0.225  Sum_probs=210.0

Q ss_pred             CceEEEEEecCC--CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC---CceEEEEEcCcccceeccCC
Q 046684           50 PAWFLALPTRNR--GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS---TILQLVLCNPFTRQFRYLPL  124 (373)
Q Consensus        50 ~~~l~~~~~~~~--~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~---~~~~~~v~np~t~~w~~lp~  124 (373)
                      ...++++++.+.  ...++.||+.+++|..++.++.+|..++++..++.||++||..   ..+++++||+.+++|+.+++
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            345777776543  3678889999999999988888888888899999999999963   24679999999999999999


Q ss_pred             CCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCce
Q 046684          125 LNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNES  204 (373)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~  204 (373)
                      +|.+|..+++++++           ++||++||..     ......++++||+.+++|+.++++|       ..+..+++
T Consensus        95 ~p~~r~~~~~~~~~-----------~~iyv~GG~~-----~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~  151 (302)
T 2xn4_A           95 MRDRRSTLGAAVLN-----------GLLYAVGGFD-----GSTGLSSVEAYNIKSNEWFHVAPMN-------TRRSSVGV  151 (302)
T ss_dssp             CSSCCBSCEEEEET-----------TEEEEEEEEC-----SSCEEEEEEEEETTTTEEEEECCCS-------SCCBSCEE
T ss_pred             CCccccceEEEEEC-----------CEEEEEcCCC-----CCccCceEEEEeCCCCeEeecCCCC-------CcccCceE
Confidence            99999999988886           9999999987     5566788999999999999999885       45677888


Q ss_pred             EEECCEEEEEEcCC------ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc----eEEEEeecC
Q 046684          205 VCTRGMLYWITSAR------AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD----ACVWELSEG  274 (373)
Q Consensus       205 ~~~~g~ly~~gg~~------~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~----~~i~~~~~~  274 (373)
                      +.+++++|++||..      ...+++||+++++|+.+ .++|..+..+.+++++++||++||..+..    +.+|++   
T Consensus       152 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~---  227 (302)
T 2xn4_A          152 GVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP---  227 (302)
T ss_dssp             EEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEET---
T ss_pred             EEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-CCCccccccccEEEECCEEEEECCCCCCcccceEEEEeC---
Confidence            99999999998632      56799999999999999 78888998899999999999999976532    455555   


Q ss_pred             CCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEec
Q 046684          275 GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       275 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~  341 (373)
                       ++++|+.+..+|.++.           .+.++..+++||++||..     ..+++||++  ++  +|+.++
T Consensus       228 -~~~~W~~~~~~~~~r~-----------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~--~W~~~~  283 (302)
T 2xn4_A          228 -TTNAWRQVADMNMCRR-----------NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT--TD--KWTVVS  283 (302)
T ss_dssp             -TTTEEEEECCCSSCCB-----------SCEEEEETTEEEEECCBCSSSBCCCEEEEETT--TT--EEEECS
T ss_pred             -CCCCEeeCCCCCCccc-----------cCeEEEECCEEEEECCcCCCcccccEEEEcCC--CC--eEEECC
Confidence             5599999998887654           366777899999999753     469999999  99  999987

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=249.48  Aligned_cols=254  Identities=17%  Similarity=0.233  Sum_probs=212.8

Q ss_pred             CceEEEEEe-cCC---CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC---CceEEEEEcCcccc---e
Q 046684           50 PAWFLALPT-RNR---GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS---TILQLVLCNPFTRQ---F  119 (373)
Q Consensus        50 ~~~l~~~~~-~~~---~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~---~~~~~~v~np~t~~---w  119 (373)
                      ...++++++ ...   ...++.||+.+++|..++.++.+|..++++..++.||++||..   ..+++++||+.+++   |
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            345777776 332   3688899999999999987777888888999999999999963   24579999999999   9


Q ss_pred             eccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceec
Q 046684          120 RYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVW  199 (373)
Q Consensus       120 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~  199 (373)
                      +.++++|.+|..+++++.+           ++||++||..     ......++++||+.+++|+.++++|       ..+
T Consensus        94 ~~~~~~p~~r~~~~~~~~~-----------~~lyv~GG~~-----~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r  150 (301)
T 2vpj_A           94 YSVAPMNVRRGLAGATTLG-----------DMIYVSGGFD-----GSRRHTSMERYDPNIDQWSMLGDMQ-------TAR  150 (301)
T ss_dssp             EEECCCSSCCBSCEEEEET-----------TEEEEECCBC-----SSCBCCEEEEEETTTTEEEEEEECS-------SCC
T ss_pred             EECCCCCCCccceeEEEEC-----------CEEEEEcccC-----CCcccceEEEEcCCCCeEEECCCCC-------CCc
Confidence            9999999999999988886           9999999987     5556789999999999999998884       456


Q ss_pred             cCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc----eEEEEe
Q 046684          200 TPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD----ACVWEL  271 (373)
Q Consensus       200 ~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~----~~i~~~  271 (373)
                      ..++++.+++++|++||..    ...+++||+++++|+.+ .++|.++..+.++.++++||++||.....    +.+|++
T Consensus       151 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          151 EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeC-CCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeC
Confidence            7788889999999998643    57899999999999999 78898998899999999999999976432    455555


Q ss_pred             ecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEecccccC
Q 046684          272 SEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVGGCCLT  346 (373)
Q Consensus       272 ~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~~~~~~  346 (373)
                          ++++|+.+..+|.++.           .+.++..+++||++||..     ..+++||++  ++  +|+.++..|.+
T Consensus       230 ----~~~~W~~~~~~p~~r~-----------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~--~W~~~~~~~~~  290 (301)
T 2vpj_A          230 ----RTDSWTTVTSMTTPRC-----------YVGATVLRGRLYAIAGYDGNSLLSSIECYDPI--ID--SWEVVTSMGTQ  290 (301)
T ss_dssp             ----TTTEEEEECCCSSCCB-----------SCEEEEETTEEEEECCBCSSSBEEEEEEEETT--TT--EEEEEEEEEEE
T ss_pred             ----CCCcEEECCCCCCccc-----------ceeEEEECCEEEEEcCcCCCcccccEEEEcCC--CC--eEEEcCCCCcc
Confidence                5599999988887664           366777899999999754     579999999  99  99999876543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=248.39  Aligned_cols=253  Identities=16%  Similarity=0.209  Sum_probs=205.6

Q ss_pred             eEEEEEecCCCeeEEEEeCCCCCccccCCC-CCCCCceeEEeeCcEEEEeeCC-----C----CceEEEEEcCcccceec
Q 046684           52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLD-FLPYPVRPVSSIGSFLLLRPIN-----S----TILQLVLCNPFTRQFRY  121 (373)
Q Consensus        52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~-~~~~~~~~~~~~~g~l~~~gg~-----~----~~~~~~v~np~t~~w~~  121 (373)
                      .++++++    ..++.||+.+++|...+.+ +.+|..++++..++.||++||.     .    ...++++|||.+++|+.
T Consensus         6 ~l~~~GG----~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            6 LIFMISE----EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEEEET----TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEEEcC----CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            4666666    5788899999999874332 4578888899999999999984     1    12458999999999999


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccC
Q 046684          122 LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTP  201 (373)
Q Consensus       122 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  201 (373)
                      ++++|.+|..+++++++           ++||++||....  .+.....++++||+.+++|+.++++|       .++..
T Consensus        82 ~~~~p~~r~~~~~~~~~-----------~~lyv~GG~~~~--~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~  141 (315)
T 4asc_A           82 MPPLPSPRCLFGLGEAL-----------NSIYVVGGREIK--DGERCLDSVMCYDRLSFKWGESDPLP-------YVVYG  141 (315)
T ss_dssp             CCCBSSCEESCEEEEET-----------TEEEEECCEESS--TTCCBCCCEEEEETTTTEEEECCCCS-------SCCBS
T ss_pred             CCCCCcchhceeEEEEC-----------CEEEEEeCCcCC--CCCcccceEEEECCCCCcEeECCCCC-------Ccccc
Confidence            99999999999988886           999999996410  13456778999999999999999885       45778


Q ss_pred             CceEEECCEEEEEEcC-----CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc--eEEEEeecC
Q 046684          202 NESVCTRGMLYWITSA-----RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD--ACVWELSEG  274 (373)
Q Consensus       202 ~~~~~~~g~ly~~gg~-----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~--~~i~~~~~~  274 (373)
                      ++++.++++||++||.     ..+.+++||+.+++|+.+ .++|.++..+.+++++++||++||.....  -.+|.++. 
T Consensus       142 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~-  219 (315)
T 4asc_A          142 HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL-APMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI-  219 (315)
T ss_dssp             CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET-
T ss_pred             eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC-CCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEEC-
Confidence            8889999999999875     246899999999999999 68899999999999999999999986653  24555544 


Q ss_pred             CCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--------------ccEEEEEccccCCcccEEEe
Q 046684          275 GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--------------LGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       275 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~yd~~~~~~~~~W~~~  340 (373)
                       ++++|+.+..+|.++.           .+.++..+++||++||..              ..+++||++  ++  +|+.+
T Consensus       220 -~~~~W~~~~~~p~~r~-----------~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~--~W~~~  283 (315)
T 4asc_A          220 -TDNKWAPFEAFPQERS-----------SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEE--EK--KWEGV  283 (315)
T ss_dssp             -TTTEEEEECCCSSCCB-----------SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT--TT--EEEEE
T ss_pred             -CCCeEEECCCCCCccc-----------ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCC--CC--hhhhh
Confidence             5699999988887764           367778899999999753              458999999  99  99999


Q ss_pred             cccccC
Q 046684          341 GGCCLT  346 (373)
Q Consensus       341 ~~~~~~  346 (373)
                      ...|..
T Consensus       284 ~~~~r~  289 (315)
T 4asc_A          284 LREIAY  289 (315)
T ss_dssp             ESCSSC
T ss_pred             ccCCcC
Confidence            544433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=8.7e-33  Score=246.46  Aligned_cols=247  Identities=17%  Similarity=0.269  Sum_probs=201.5

Q ss_pred             ceEEEEEecCCCeeEEEEeCCCCCccccCCC-CCCCCceeEEeeCcEEEEeeCCC----C-----ceEEEEEcCccccee
Q 046684           51 AWFLALPTRNRGLCCYVHNPVSDKWHVLSLD-FLPYPVRPVSSIGSFLLLRPINS----T-----ILQLVLCNPFTRQFR  120 (373)
Q Consensus        51 ~~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~-~~~~~~~~~~~~~g~l~~~gg~~----~-----~~~~~v~np~t~~w~  120 (373)
                      ..++++++.    .++.||+.+++|...+.+ +.+|..++++..++.||++||..    .     ...+++|||.+++|+
T Consensus        16 ~~i~~~GG~----~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   91 (318)
T 2woz_A           16 DLILLVNDT----AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV   91 (318)
T ss_dssp             EEEEEECSS----EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred             chhhhcccc----ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence            356776653    478899999999885433 36788888899999999999941    1     224899999999999


Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceecc
Q 046684          121 YLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWT  200 (373)
Q Consensus       121 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~  200 (373)
                      .++++|.+|..+++++++           ++||++||...   .......++++||+.+++|+.++++|       ..+.
T Consensus        92 ~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~~---~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~  150 (318)
T 2woz_A           92 GLPPLPSARCLFGLGEVD-----------DKIYVVAGKDL---QTEASLDSVLCYDPVAAKWSEVKNLP-------IKVY  150 (318)
T ss_dssp             ECSCBSSCBCSCEEEEET-----------TEEEEEEEEBT---TTCCEEEEEEEEETTTTEEEEECCCS-------SCEE
T ss_pred             ECCCCCccccccceEEEC-----------CEEEEEcCccC---CCCcccceEEEEeCCCCCEeECCCCC-------Cccc
Confidence            999999999999988886           99999999751   02345678999999999999999885       3467


Q ss_pred             CCceEEECCEEEEEEcC-----CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc--eEEEEeec
Q 046684          201 PNESVCTRGMLYWITSA-----RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD--ACVWELSE  273 (373)
Q Consensus       201 ~~~~~~~~g~ly~~gg~-----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~--~~i~~~~~  273 (373)
                      .++++.++|+||++||.     ..+.+++||+.+++|+.+ .++|.++..+.+++++++||++||.....  ..+|.++.
T Consensus       151 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~  229 (318)
T 2woz_A          151 GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL-APMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDL  229 (318)
T ss_dssp             SCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEET
T ss_pred             ccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC-CCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEEC
Confidence            78888899999999864     256799999999999999 68888998889999999999999986653  23444444


Q ss_pred             CCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--------------ccEEEEEccccCCcccEEE
Q 046684          274 GGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--------------LGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       274 ~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~yd~~~~~~~~~W~~  339 (373)
                        ++++|+.+..+|.++.           .+.++..+++||++||..              ..+++||++  ++  +|+.
T Consensus       230 --~~~~W~~~~~~p~~r~-----------~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~--~~--~W~~  292 (318)
T 2woz_A          230 --KTNKWEVMTEFPQERS-----------SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD--KK--EWAG  292 (318)
T ss_dssp             --TTCCEEECCCCSSCCB-----------SCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETT--TT--EEEE
T ss_pred             --CCCeEEECCCCCCccc-----------ceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCC--CC--Eehh
Confidence              5699999988887654           367778899999998752              469999999  99  9998


Q ss_pred             e
Q 046684          340 V  340 (373)
Q Consensus       340 ~  340 (373)
                      +
T Consensus       293 ~  293 (318)
T 2woz_A          293 M  293 (318)
T ss_dssp             E
T ss_pred             h
Confidence            8

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.97  E-value=5.7e-30  Score=231.98  Aligned_cols=252  Identities=13%  Similarity=0.108  Sum_probs=193.3

Q ss_pred             CceEEEEEecCCCeeEEEEeCC--CCCccccCCCC-CCCCceeEEeeCcEEEEeeCC-C-------CceEEEEEcCcccc
Q 046684           50 PAWFLALPTRNRGLCCYVHNPV--SDKWHVLSLDF-LPYPVRPVSSIGSFLLLRPIN-S-------TILQLVLCNPFTRQ  118 (373)
Q Consensus        50 ~~~l~~~~~~~~~~~~~~~d~~--~~~w~~~~~~~-~~~~~~~~~~~~g~l~~~gg~-~-------~~~~~~v~np~t~~  118 (373)
                      ...++++++... ..++.||+.  +++|..++.++ .+|..++++..++.||++||. .       ..+++++|||.+++
T Consensus        19 ~~~iyv~GG~~~-~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAG-TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGT-TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCC-CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            445677776544 478899997  48999998777 789999999999999999996 2       13579999999999


Q ss_pred             eeccCCCC-CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC-------------------------------
Q 046684          119 FRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA-------------------------------  166 (373)
Q Consensus       119 w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~-------------------------------  166 (373)
                      |+.+++++ .+|..+++++.+           ++||++||..     ..                               
T Consensus        98 W~~~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (357)
T 2uvk_A           98 WVKLMSHAPMGMAGHVTFVHN-----------GKAYVTGGVN-----QNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA  161 (357)
T ss_dssp             EEECSCCCSSCCSSEEEEEET-----------TEEEEEECCC-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred             EEECCCCCCcccccceEEEEC-----------CEEEEEeCcC-----CCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence            99999888 888888777765           9999999975     22                               


Q ss_pred             ---cccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC-----CceEEEEEEC--CCCcEEecc
Q 046684          167 ---TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA-----RAYSVIGFDI--ESNTWRELS  236 (373)
Q Consensus       167 ---~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~-----~~~~i~~yd~--~~~~w~~~~  236 (373)
                         .....+++||+.+++|+.+.++|.      ..+..+++++++++||++||.     ....++.||+  ++++|+.+ 
T Consensus       162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~------~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~-  234 (357)
T 2uvk_A          162 EDYFFNKFLLSFDPSTQQWSYAGESPW------YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL-  234 (357)
T ss_dssp             GGGCCCCEEEEEETTTTEEEEEEECSS------CCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEEC-
T ss_pred             cccCCcccEEEEeCCCCcEEECCCCCC------CCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEec-
Confidence               134789999999999999988862      334557888999999999863     2567888986  89999999 


Q ss_pred             cCCCCC--CCceeEEEECCEEEEEEeecCC---------------------ceEEEEeecCCCCCCeEEEEeechhhhhh
Q 046684          237 APMADR--LEFATLVSRNQKLTLIGGTCGG---------------------DACVWELSEGGDDDIWCLIEKVPIEMGMR  293 (373)
Q Consensus       237 ~~~p~~--~~~~~~~~~~g~l~~~gg~~~~---------------------~~~i~~~~~~~~~~~W~~v~~~p~~~~~~  293 (373)
                      .++|.+  +..+.+++.+++||++||....                     .+++|+++.    ++|+++..+|.++.. 
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~r~~-  309 (357)
T 2uvk_A          235 APVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN----GKWDKSGELSQGRAY-  309 (357)
T ss_dssp             CCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-------CEEEEECSSCCBS-
T ss_pred             CCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCC----CceeeCCCCCCCccc-
Confidence            566554  4456688999999999996421                     256676654    999999999987653 


Q ss_pred             hcCCCCCCCceEEEecCCEEEEEEcCC------ccEEEEEccccCCcccEEEecccc
Q 046684          294 LSGGKASWGGTRCAAGNGAICLYREVG------LGMIIWREDEDKRKWEWVWVGGCC  344 (373)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~yd~~~~~~~~~W~~~~~~~  344 (373)
                                +.++..+++||++||..      .+++.++++  ++  +|......|
T Consensus       310 ----------~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~--~~--~~~~~~~~~  352 (357)
T 2uvk_A          310 ----------GVSLPWNNSLLIIGGETAGGKAVTDSVLITVK--DN--KVTVQNLEH  352 (357)
T ss_dssp             ----------SEEEEETTEEEEEEEECGGGCEEEEEEEEEC---CC--SCEEEC---
T ss_pred             ----------ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEc--Cc--EeEeeeccc
Confidence                      66777899999999853      468899999  99  998776544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.97  E-value=1.3e-29  Score=224.94  Aligned_cols=247  Identities=18%  Similarity=0.252  Sum_probs=197.1

Q ss_pred             hhHHHhhcccccchhccccccchhhccC-CCCceEEEEEec----C---CCeeEEEEeCCCCCccccCCCCCCCCceeEE
Q 046684           20 DSLARAKSVCSHWHTCAKLYHLHSVSQH-RRPAWFLALPTR----N---RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVS   91 (373)
Q Consensus        20 ~~l~r~r~Vck~W~~li~~~~f~~~~~~-~~~~~l~~~~~~----~---~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~   91 (373)
                      .++..+....++|..+...|.-+..... .....++++++.    .   ....++.||+.+++|.+++.++.+|..++++
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  118 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG  118 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE
Confidence            3455566677889888654432211111 224557777664    2   1257889999999999998888899999999


Q ss_pred             eeCcEEEEeeCCCC---ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684           92 SIGSFLLLRPINST---ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY  168 (373)
Q Consensus        92 ~~~g~l~~~gg~~~---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~  168 (373)
                      ..+|.||++||...   ..++++||+.+++|+.++++|.+|..+++++++           ++||++||..     ....
T Consensus       119 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~-----~~~~  182 (308)
T 1zgk_A          119 VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN-----------RLLYAVGGFD-----GTNR  182 (308)
T ss_dssp             EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET-----------TEEEEECCBC-----SSCB
T ss_pred             EECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEEC-----------CEEEEEeCCC-----CCCc
Confidence            99999999999632   457999999999999999999999999888876           9999999987     5555


Q ss_pred             cceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCC
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLE  244 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~  244 (373)
                      ..++++||+.+++|+.++++|       ..+..++++.++++||++||..    ...+++||+++++|+.+ .++|..+.
T Consensus       183 ~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~  254 (308)
T 1zgk_A          183 LNSAECYYPERNEWRMITAMN-------TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-APMKHRRS  254 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCS-------SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-CCCSSCCB
T ss_pred             CceEEEEeCCCCeEeeCCCCC-------CccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-CCCCCCcc
Confidence            788999999999999999885       4567788889999999998643    57899999999999999 68888898


Q ss_pred             ceeEEEECCEEEEEEeecCCc--eEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          245 FATLVSRNQKLTLIGGTCGGD--ACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       245 ~~~~~~~~g~l~~~gg~~~~~--~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      .+.++.++++||++||.....  .++|.++.  ++++|+.+..||.++..
T Consensus       255 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~r~~  302 (308)
T 1zgk_A          255 ALGITVHQGRIYVLGGYDGHTFLDSVECYDP--DTDTWSEVTRMTSGRSG  302 (308)
T ss_dssp             SCEEEEETTEEEEECCBCSSCBCCEEEEEET--TTTEEEEEEECSSCCBS
T ss_pred             ceEEEEECCEEEEEcCcCCCcccceEEEEcC--CCCEEeecCCCCCCccc
Confidence            889999999999999976532  24444444  55999999999987754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.97  E-value=8.8e-30  Score=226.70  Aligned_cols=255  Identities=13%  Similarity=0.115  Sum_probs=196.5

Q ss_pred             Hhhcccccchhccccccchhh-ccC--CCCceEEEEEec-----CC----CeeEEEEeCCCCCccccCCCCCCCCceeEE
Q 046684           24 RAKSVCSHWHTCAKLYHLHSV-SQH--RRPAWFLALPTR-----NR----GLCCYVHNPVSDKWHVLSLDFLPYPVRPVS   91 (373)
Q Consensus        24 r~r~Vck~W~~li~~~~f~~~-~~~--~~~~~l~~~~~~-----~~----~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~   91 (373)
                      .+....++|.. ...|.-..+ ...  .....++++++.     ..    ...++.||+.+++|..++.++.+|..++++
T Consensus        17 ~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~   95 (315)
T 4asc_A           17 AYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLG   95 (315)
T ss_dssp             EEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEE
T ss_pred             EECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEE
Confidence            34445677864 333221111 111  334456666652     11    145889999999999998888899999999


Q ss_pred             eeCcEEEEeeCC------CCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC
Q 046684           92 SIGSFLLLRPIN------STILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG  165 (373)
Q Consensus        92 ~~~g~l~~~gg~------~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~  165 (373)
                      ..++.||++||.      ...+++++||+.+++|+.++++|.+|..+++++.+           ++||++||..    ..
T Consensus        96 ~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~----~~  160 (315)
T 4asc_A           96 EALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHM-----------DLVYVIGGKG----SD  160 (315)
T ss_dssp             EETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET-----------TEEEEECCBC----TT
T ss_pred             EECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEEC-----------CEEEEEeCCC----CC
Confidence            999999999994      23467999999999999999999999999988876           9999999984    14


Q ss_pred             CcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCC
Q 046684          166 ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMAD  241 (373)
Q Consensus       166 ~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~  241 (373)
                      .....++++||+.+++|+.++++|       .++..++++.++++||++||..    ...+++||+++++|+.+ .++|.
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~  232 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQ-------TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-EAFPQ  232 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCS-------SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-CCCSS
T ss_pred             CcccceEEEEeCCCCeEEECCCCC-------CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC-CCCCC
Confidence            556789999999999999999884       4577788899999999999743    46899999999999999 78899


Q ss_pred             CCCceeEEEECCEEEEEEeecCC-----------ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecC
Q 046684          242 RLEFATLVSRNQKLTLIGGTCGG-----------DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGN  310 (373)
Q Consensus       242 ~~~~~~~~~~~g~l~~~gg~~~~-----------~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~  310 (373)
                      ++..+.++.++++||++||....           ..++|.++.  ++++|+.+  ++.++.           .+.++..+
T Consensus       233 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~--~~~~r~-----------~~~~~~~~  297 (315)
T 4asc_A          233 ERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGV--LREIAY-----------AAGATFLP  297 (315)
T ss_dssp             CCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEE--ESCSSC-----------CSSCEEEE
T ss_pred             cccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhh--ccCCcC-----------ccceEEeC
Confidence            99999999999999999997431           134555555  66999999  444332           35567778


Q ss_pred             CEEEEEE
Q 046684          311 GAICLYR  317 (373)
Q Consensus       311 ~~i~~~~  317 (373)
                      ++||++.
T Consensus       298 ~~l~v~~  304 (315)
T 4asc_A          298 VRLNVLR  304 (315)
T ss_dssp             EEECGGG
T ss_pred             CEEEEEE
Confidence            8888864

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.97  E-value=3.1e-29  Score=227.13  Aligned_cols=236  Identities=14%  Similarity=0.177  Sum_probs=181.8

Q ss_pred             ccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCc--ccceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCceEEE
Q 046684           77 VLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPF--TRQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNFRIY  153 (373)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~--t~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~kl~  153 (373)
                      .++.++.+|..++++..++.||++||.. .+++++||+.  +++|+.++++| .+|..+++++++           ++||
T Consensus         2 ~l~~lP~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~-----------~~ly   69 (357)
T 2uvk_A            2 VLPETPVPFKSGTGAIDNDTVYIGLGSA-GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID-----------GNLY   69 (357)
T ss_dssp             CSCCCSSCCCSCEEEEETTEEEEECGGG-TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEET-----------TEEE
T ss_pred             CCCCCCccccceEEEEECCEEEEEeCcC-CCeEEEEccccCCCCeeECCCCCCCcCccceEEEEC-----------CEEE
Confidence            3556667787787778899999999964 3479999998  49999999999 899999998886           9999


Q ss_pred             EEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC---------------
Q 046684          154 VAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR---------------  218 (373)
Q Consensus       154 ~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---------------  218 (373)
                      ++||.............++++||+.+++|+.+++++      +..+..++++.++++||++||..               
T Consensus        70 v~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  143 (357)
T 2uvk_A           70 VFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA------PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAG  143 (357)
T ss_dssp             EECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC------SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred             EEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC------CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcC
Confidence            999972100112345678999999999999999884      25677777788999999999743               


Q ss_pred             -----------------------ceEEEEEECCCCcEEecccCCCCCCCc-eeEEEECCEEEEEEeecCC-----ceEEE
Q 046684          219 -----------------------AYSVIGFDIESNTWRELSAPMADRLEF-ATLVSRNQKLTLIGGTCGG-----DACVW  269 (373)
Q Consensus       219 -----------------------~~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~~~g~l~~~gg~~~~-----~~~i~  269 (373)
                                             .+.+++||+.+++|+.+ .++|..+.. +.+++.+++||++||....     .+.+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~  222 (357)
T 2uvk_A          144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA-GESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFEL  222 (357)
T ss_dssp             TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEE-EECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEE
T ss_pred             CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEEC-CCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEE
Confidence                                   36899999999999999 677765544 8889999999999997532     25566


Q ss_pred             EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----------------------ccEEEEE
Q 046684          270 ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG----------------------LGMIIWR  327 (373)
Q Consensus       270 ~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~yd  327 (373)
                      +++.  ++++|+.+..++.++..         ..+.++..+++||++||..                      ..+.+||
T Consensus       223 d~d~--~~~~W~~~~~~~~~~~~---------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd  291 (357)
T 2uvk_A          223 DFTG--NNLKWNKLAPVSSPDGV---------AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL  291 (357)
T ss_dssp             ECC-----CEEEECCCSSTTTCC---------BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE
T ss_pred             EecC--CCCcEEecCCCCCCccc---------ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEe
Confidence            6644  56999999888765432         1466788899999999842                      3689999


Q ss_pred             ccccCCcccEEEecccccC
Q 046684          328 EDEDKRKWEWVWVGGCCLT  346 (373)
Q Consensus       328 ~~~~~~~~~W~~~~~~~~~  346 (373)
                      ++  ++  +|+.++..|.+
T Consensus       292 ~~--~~--~W~~~~~~p~~  306 (357)
T 2uvk_A          292 WH--NG--KWDKSGELSQG  306 (357)
T ss_dssp             CC-------CEEEEECSSC
T ss_pred             cC--CC--ceeeCCCCCCC
Confidence            99  99  99999766544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.97  E-value=9e-30  Score=225.25  Aligned_cols=243  Identities=20%  Similarity=0.231  Sum_probs=192.1

Q ss_pred             hHHHhhcccccchhccccccchhhccC-CCCceEEEEEecCC---CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcE
Q 046684           21 SLARAKSVCSHWHTCAKLYHLHSVSQH-RRPAWFLALPTRNR---GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSF   96 (373)
Q Consensus        21 ~l~r~r~Vck~W~~li~~~~f~~~~~~-~~~~~l~~~~~~~~---~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~   96 (373)
                      ++..+....++|..+...|.-+..... .....++++++...   ...++.||+.+++|..++.++.+|..++++..++.
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~  110 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGL  110 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCE
Confidence            334445556788887544432111111 22445777766432   36788999999999999888889999999999999


Q ss_pred             EEEeeCCCC---ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC--cccce
Q 046684           97 LLLRPINST---ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA--TYESM  171 (373)
Q Consensus        97 l~~~gg~~~---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~--~~~~~  171 (373)
                      ||++||...   .+++++||+.+++|+.++++|.+|..+++++++           ++||++||..     ..  ....+
T Consensus       111 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~-----~~~~~~~~~  174 (302)
T 2xn4_A          111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVG-----------GLLYAVGGYD-----VASRQCLST  174 (302)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEET-----------TEEEEECCEE-----TTTTEECCC
T ss_pred             EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEEC-----------CEEEEEeCCC-----CCCCccccE
Confidence            999998632   457999999999999999999999999888876           9999999976     32  34678


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLEFAT  247 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~~~~  247 (373)
                      +++||+.+++|+.++++|       ..+..++++.++++||++||..    ...+++||+++++|+.+ .++|..+..+.
T Consensus       175 ~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~~  246 (302)
T 2xn4_A          175 VECYNATTNEWTYIAEMS-------TRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-ADMNMCRRNAG  246 (302)
T ss_dssp             EEEEETTTTEEEEECCCS-------SCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCE
T ss_pred             EEEEeCCCCcEEECCCCc-------cccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeC-CCCCCccccCe
Confidence            999999999999998885       4567788899999999998643    46899999999999999 68888888888


Q ss_pred             EEEECCEEEEEEeecCCc----eEEEEeecCCCCCCeEEEE-eechhhh
Q 046684          248 LVSRNQKLTLIGGTCGGD----ACVWELSEGGDDDIWCLIE-KVPIEMG  291 (373)
Q Consensus       248 ~~~~~g~l~~~gg~~~~~----~~i~~~~~~~~~~~W~~v~-~~p~~~~  291 (373)
                      ++..+++||++||..+..    +.+|++    ++++|+.+. .+|.++.
T Consensus       247 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~----~~~~W~~~~~~~~~~r~  291 (302)
T 2xn4_A          247 VCAVNGLLYVVGGDDGSCNLASVEYYNP----TTDKWTVVSSCMSTGRS  291 (302)
T ss_dssp             EEEETTEEEEECCBCSSSBCCCEEEEET----TTTEEEECSSCCSSCCB
T ss_pred             EEEECCEEEEECCcCCCcccccEEEEcC----CCCeEEECCcccCcccc
Confidence            999999999999976532    566666    459999986 6777664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.97  E-value=2.9e-29  Score=221.84  Aligned_cols=246  Identities=13%  Similarity=0.184  Sum_probs=197.3

Q ss_pred             hHHHhhcccccchhccccccchhhccC-CCCceEEEEEecCC---CeeEEEEeCCCCC---ccccCCCCCCCCceeEEee
Q 046684           21 SLARAKSVCSHWHTCAKLYHLHSVSQH-RRPAWFLALPTRNR---GLCCYVHNPVSDK---WHVLSLDFLPYPVRPVSSI   93 (373)
Q Consensus        21 ~l~r~r~Vck~W~~li~~~~f~~~~~~-~~~~~l~~~~~~~~---~~~~~~~d~~~~~---w~~~~~~~~~~~~~~~~~~   93 (373)
                      ++.++....++|..+...|.-+..... .....++++++...   ...++.||+.+++   |..++.++.+|..++++..
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~  111 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL  111 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE
Confidence            444555667889887755442111111 22455777766432   3678899999999   9999888889999999999


Q ss_pred             CcEEEEeeCCCC---ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccc
Q 046684           94 GSFLLLRPINST---ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES  170 (373)
Q Consensus        94 ~g~l~~~gg~~~---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~  170 (373)
                      ++.||++||...   .+++++||+.+++|+.++++|.+|..+++++++           ++||++||.+     ......
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~-----~~~~~~  175 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS-----------GVIYCLGGYD-----GLNILN  175 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEET-----------TEEEEECCBC-----SSCBCC
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEEC-----------CEEEEECCCC-----CCcccc
Confidence            999999998643   458999999999999999999999998888876           9999999987     555678


Q ss_pred             eEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCCce
Q 046684          171 MVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLEFA  246 (373)
Q Consensus       171 ~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~~~  246 (373)
                      .+++||+.+++|+.++++|       ..+..++++.++++||++||..    ...+++||+++++|+.+ .++|..+..+
T Consensus       176 ~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~  247 (301)
T 2vpj_A          176 SVEKYDPHTGHWTNVTPMA-------TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-TSMTTPRCYV  247 (301)
T ss_dssp             CEEEEETTTTEEEEECCCS-------SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSC
T ss_pred             eEEEEeCCCCcEEeCCCCC-------cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-CCCCCcccce
Confidence            8999999999999998884       4566788899999999998643    57899999999999999 6888888888


Q ss_pred             eEEEECCEEEEEEeecCCc--eEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          247 TLVSRNQKLTLIGGTCGGD--ACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       247 ~~~~~~g~l~~~gg~~~~~--~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      .++.++++||++||.....  -.+|.++.  ++++|+.+..+|.++..
T Consensus       248 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r~~  293 (301)
T 2vpj_A          248 GATVLRGRLYAIAGYDGNSLLSSIECYDP--IIDSWEVVTSMGTQRCD  293 (301)
T ss_dssp             EEEEETTEEEEECCBCSSSBEEEEEEEET--TTTEEEEEEEEEEEEES
T ss_pred             eEEEECCEEEEEcCcCCCcccccEEEEcC--CCCeEEEcCCCCccccc
Confidence            9999999999999976543  34555554  56999999999987754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.97  E-value=3.4e-29  Score=221.98  Aligned_cols=246  Identities=15%  Similarity=0.134  Sum_probs=195.6

Q ss_pred             hHHHhhcccccchhccccccchhhccC-CCCceEEEEEecC--CCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEE
Q 046684           21 SLARAKSVCSHWHTCAKLYHLHSVSQH-RRPAWFLALPTRN--RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFL   97 (373)
Q Consensus        21 ~l~r~r~Vck~W~~li~~~~f~~~~~~-~~~~~l~~~~~~~--~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l   97 (373)
                      ++.++....++|..+...|.-+..... .....++++++..  ....++.||+.+++|..++.++.+|..++++..++.|
T Consensus        25 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i  104 (306)
T 3ii7_A           25 SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKI  104 (306)
T ss_dssp             SEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEE
T ss_pred             eEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEE
Confidence            344455667789887655432111111 2344577776654  2378889999999999998888899999999999999


Q ss_pred             EEeeCCC----CceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc----c
Q 046684           98 LLRPINS----TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY----E  169 (373)
Q Consensus        98 ~~~gg~~----~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~----~  169 (373)
                      |++||.+    ...++++||+.+++|+.++++|.+|..+++++++           ++||++||..     ....    .
T Consensus       105 yv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~-----~~~~~~~~~  168 (306)
T 3ii7_A          105 YTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEAN-----------GLIYVCGGSL-----GNNVSGRVL  168 (306)
T ss_dssp             EEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET-----------TEEEEECCEE-----SCTTTCEEC
T ss_pred             EEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEEC-----------CEEEEECCCC-----CCCCccccc
Confidence            9999964    2467999999999999999999999999888876           9999999976     3333    7


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCCc
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLEF  245 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~~  245 (373)
                      .++++||+.+++|+.++++|       ..+..+.++.++++||++||..    ...+++||+++++|+.+ .++|..+..
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~  240 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMI-------EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SPMPWKGVT  240 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCS-------SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CCCSCCBSC
T ss_pred             ceEEEeCCCCCeEEECCCcc-------chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CCCCCCccc
Confidence            88999999999999999884       4567888899999999998642    46799999999999999 788999999


Q ss_pred             eeEEEECCEEEEEEeecCCc--eEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          246 ATLVSRNQKLTLIGGTCGGD--ACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       246 ~~~~~~~g~l~~~gg~~~~~--~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      +.+++++++||++||..+..  -.+|.++.  ++++|+.+..+|.++..
T Consensus       241 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~r~~  287 (306)
T 3ii7_A          241 VKCAAVGSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVRAFPVT  287 (306)
T ss_dssp             CEEEEETTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEECCSCT
T ss_pred             eeEEEECCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcccccce
Confidence            99999999999999976442  24555554  56999999999876653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.96  E-value=1.2e-28  Score=219.75  Aligned_cols=231  Identities=15%  Similarity=0.194  Sum_probs=186.3

Q ss_pred             CCceEEEEEecC----C-----CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC-----CceEEEEEcC
Q 046684           49 RPAWFLALPTRN----R-----GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS-----TILQLVLCNP  114 (373)
Q Consensus        49 ~~~~l~~~~~~~----~-----~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~-----~~~~~~v~np  114 (373)
                      ....++++++..    .     ...++.||+.+++|..++.++.+|..++++..++.||++||..     ..+++++||+
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~  134 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDP  134 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeC
Confidence            345577776631    1     1348899999999999988888999999999999999999863     2357999999


Q ss_pred             cccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccc
Q 046684          115 FTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAV  194 (373)
Q Consensus       115 ~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~  194 (373)
                      .+++|+.++++|.+|..+++++.+           ++||++||..    .......++++||+.+++|+.++++|     
T Consensus       135 ~~~~W~~~~~~p~~r~~~~~~~~~-----------~~iyv~GG~~----~~~~~~~~~~~yd~~~~~W~~~~~~p-----  194 (318)
T 2woz_A          135 VAAKWSEVKNLPIKVYGHNVISHN-----------GMIYCLGGKT----DDKKCTNRVFIYNPKKGDWKDLAPMK-----  194 (318)
T ss_dssp             TTTEEEEECCCSSCEESCEEEEET-----------TEEEEECCEE----SSSCBCCCEEEEETTTTEEEEECCCS-----
T ss_pred             CCCCEeECCCCCCcccccEEEEEC-----------CEEEEEcCCC----CCCCccceEEEEcCCCCEEEECCCCC-----
Confidence            999999999999999998888866           9999999975    13445678999999999999999884     


Q ss_pred             cceeccCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC------
Q 046684          195 RLTVWTPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG------  264 (373)
Q Consensus       195 ~~~~~~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~------  264 (373)
                        ..+..++++.++++||++||..    ...+++||+++++|+.+ .++|.++..+.++.++++||++||....      
T Consensus       195 --~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~  271 (318)
T 2woz_A          195 --TPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TEFPQERSSISLVSLAGSLYAIGGFAMIQLESKE  271 (318)
T ss_dssp             --SCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CCCSSCCBSCEEEEETTEEEEECCBCCBC----C
T ss_pred             --CCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CCCCCcccceEEEEECCEEEEECCeeccCCCCce
Confidence              4567778899999999998642    46799999999999999 7888889888999999999999997531      


Q ss_pred             -----ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEE
Q 046684          265 -----DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR  317 (373)
Q Consensus       265 -----~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  317 (373)
                           ..++|.++.  ++++|+++  +|..+..           +.++..+++||++.
T Consensus       272 ~~~~~~~~v~~yd~--~~~~W~~~--~~~~r~~-----------~~~~~~~~~iyi~~  314 (318)
T 2woz_A          272 FAPTEVNDIWKYED--DKKEWAGM--LKEIRYA-----------SGASCLATRLNLFK  314 (318)
T ss_dssp             CBCCBCCCEEEEET--TTTEEEEE--ESCCGGG-----------TTCEEEEEEEEGGG
T ss_pred             eccceeeeEEEEeC--CCCEehhh--ccccccc-----------ccceeeCCEEEEEE
Confidence                 124555554  66999998  6655543           55667788888753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.93  E-value=7.5e-25  Score=214.01  Aligned_cols=217  Identities=9%  Similarity=0.100  Sum_probs=170.7

Q ss_pred             CCCCCCceeEEeeCcEEEEeeCCC--CceEEEEEcCcccceeccC-C-----CCCCCCCCeEEEE--EcCCCCCCCCCce
Q 046684           81 DFLPYPVRPVSSIGSFLLLRPINS--TILQLVLCNPFTRQFRYLP-L-----LNVSRTNPAVGIV--MEGPAQHGPFPNF  150 (373)
Q Consensus        81 ~~~~~~~~~~~~~~g~l~~~gg~~--~~~~~~v~np~t~~w~~lp-~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~  150 (373)
                      ++..+..+ +++.++.||++||..  ..+++++|||.+++|+.++ +     +|.+|..++++++  +           +
T Consensus       385 ~p~rr~g~-~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-----------~  452 (695)
T 2zwa_A          385 PINRKFGD-VDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-----------N  452 (695)
T ss_dssp             TTCCBSCE-EEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-----------T
T ss_pred             CCCCceeE-EEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-----------C
Confidence            33344444 445899999999963  3567999999999999988 5     7888999999888  6           9


Q ss_pred             EEEEEeccCCCCCCCC-cccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCce-EEEEEEC
Q 046684          151 RIYVAGGMSDEPRGGA-TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAY-SVIGFDI  227 (373)
Q Consensus       151 kl~~~gg~~~~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~-~i~~yd~  227 (373)
                      +||++||..     .. ....++++||+.+++|+.++++|       .++..++++.+ +|+||++||.... .+++||+
T Consensus       453 ~lyv~GG~~-----~~~~~~~dv~~yd~~t~~W~~~~~~p-------~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~  520 (695)
T 2zwa_A          453 QLLLIGGRK-----APHQGLSDNWIFDMKTREWSMIKSLS-------HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNV  520 (695)
T ss_dssp             EEEEECCBS-----STTCBCCCCEEEETTTTEEEECCCCS-------BCCBSCEEEECTTSCEEEECCBCSSCSEEEEET
T ss_pred             EEEEEcCCC-----CCCCccccEEEEeCCCCcEEECCCCC-------CCcccceEEEEcCCEEEEECCCCCCCCEEEEEC
Confidence            999999986     33 35678999999999999999885       46777888886 9999999875322 7999999


Q ss_pred             CCCcEEecccC---CCCCCCceeEEEEC---CEEEEEEeecCC------ceEEEEeecCCCCCC------eEEEEeec-h
Q 046684          228 ESNTWRELSAP---MADRLEFATLVSRN---QKLTLIGGTCGG------DACVWELSEGGDDDI------WCLIEKVP-I  288 (373)
Q Consensus       228 ~~~~w~~~~~~---~p~~~~~~~~~~~~---g~l~~~gg~~~~------~~~i~~~~~~~~~~~------W~~v~~~p-~  288 (373)
                      .+++|+.+ .+   +|.++.++..++++   ++||++||....      .+.+|+++.    ++      |+.+..+| .
T Consensus       521 ~t~~W~~~-~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~----~~w~~~~~W~~~~~~p~~  595 (695)
T 2zwa_A          521 TEEIFKDV-TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA----ENATEPITVIKKLQHPLF  595 (695)
T ss_dssp             TTTEEEEC-CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT----TCSSCCEEEEEEEECGGG
T ss_pred             CCCceEEc-cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC----CccccceEEEEcCCCCCC
Confidence            99999999 44   67788888777766   899999997432      255666654    77      99998864 3


Q ss_pred             hhhhhhcCCCCCCCceEEEecC-CEEEEEEcC--------CccEEEEEccccCCcccEEEec
Q 046684          289 EMGMRLSGGKASWGGTRCAAGN-GAICLYREV--------GLGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--------~~~~~~yd~~~~~~~~~W~~~~  341 (373)
                      ++.           .+.++..+ ++||++||.        ...+++||++  ++  +|+.++
T Consensus       596 ~R~-----------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--t~--~W~~~~  642 (695)
T 2zwa_A          596 QRY-----------GSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL--SE--TLTSIP  642 (695)
T ss_dssp             CCB-----------SCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT--TT--EEEECC
T ss_pred             Ccc-----------cceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC--CC--eEEEee
Confidence            332           36666777 999999984        3579999999  99  999653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.93  E-value=1.7e-24  Score=211.57  Aligned_cols=237  Identities=11%  Similarity=0.014  Sum_probs=178.1

Q ss_pred             ceEEEEEecC--CCeeEEEEeCCCCCccccC-C-----CCCCCCceeEEee--CcEEEEeeCCCC----ceEEEEEcCcc
Q 046684           51 AWFLALPTRN--RGLCCYVHNPVSDKWHVLS-L-----DFLPYPVRPVSSI--GSFLLLRPINST----ILQLVLCNPFT  116 (373)
Q Consensus        51 ~~l~~~~~~~--~~~~~~~~d~~~~~w~~~~-~-----~~~~~~~~~~~~~--~g~l~~~gg~~~----~~~~~v~np~t  116 (373)
                      ..++++++.+  ....++.||+.+++|..++ .     ++.+|..++++..  +|.||++||...    .+++++||+.+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            3466676643  3367889999999999987 4     5678888999999  999999999632    46799999999


Q ss_pred             cceeccCCCCCCCCCCeEEEE-EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCcccccc
Q 046684          117 RQFRYLPLLNVSRTNPAVGIV-MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVR  195 (373)
Q Consensus       117 ~~w~~lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~  195 (373)
                      ++|+.++++|.+|..++++++ +           ++||++||..     ...   ++++||+.+++|+.+.....    .
T Consensus       478 ~~W~~~~~~p~~R~~h~~~~~~~-----------~~iyv~GG~~-----~~~---~v~~yd~~t~~W~~~~~~g~----~  534 (695)
T 2zwa_A          478 REWSMIKSLSHTRFRHSACSLPD-----------GNVLILGGVT-----EGP---AMLLYNVTEEIFKDVTPKDE----F  534 (695)
T ss_dssp             TEEEECCCCSBCCBSCEEEECTT-----------SCEEEECCBC-----SSC---SEEEEETTTTEEEECCCSSG----G
T ss_pred             CcEEECCCCCCCcccceEEEEcC-----------CEEEEECCCC-----CCC---CEEEEECCCCceEEccCCCC----C
Confidence            999999999999999998886 4           9999999986     333   89999999999999986311    0


Q ss_pred             ceeccCCceEEEC---CEEEEEEcC------CceEEEEEECCCCc------EEecccCC-CCCCCceeEEEEC-CEEEEE
Q 046684          196 LTVWTPNESVCTR---GMLYWITSA------RAYSVIGFDIESNT------WRELSAPM-ADRLEFATLVSRN-QKLTLI  258 (373)
Q Consensus       196 ~~~~~~~~~~~~~---g~ly~~gg~------~~~~i~~yd~~~~~------w~~~~~~~-p~~~~~~~~~~~~-g~l~~~  258 (373)
                      +..+..+++++++   +++|++||.      ..+.+++||+.+++      |+.+ .++ +.++.++.+++++ ++||++
T Consensus       535 p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~-~~~p~~~R~~~~~~~~~~~~iyv~  613 (695)
T 2zwa_A          535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKK-LQHPLFQRYGSQIKYITPRKLLIV  613 (695)
T ss_dssp             GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEE-EECGGGCCBSCEEEEEETTEEEEE
T ss_pred             CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEc-CCCCCCCcccceEEEeCCCEEEEE
Confidence            3456677767777   899999864      24789999999999      8888 454 4678888888998 999999


Q ss_pred             EeecCC-------ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcC
Q 046684          259 GGTCGG-------DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREV  319 (373)
Q Consensus       259 gg~~~~-------~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~  319 (373)
                      ||....       .+.+|++    ++++|+.+ .+|........+   ....+.++..++ +||++||.
T Consensus       614 GG~~~~~~~~~~~~v~~yd~----~t~~W~~~-~~p~~~~~~~~p---~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          614 GGTSPSGLFDRTNSIISLDP----LSETLTSI-PISRRIWEDHSL---MLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             CCBCSSCCCCTTTSEEEEET----TTTEEEEC-CCCHHHHHHSCC---CCSSCEEECC---CEEEECCE
T ss_pred             CCccCCCCCCCCCeEEEEEC----CCCeEEEe-eccccccCCCCc---cceeeeEEEeCCCEEEEEeCC
Confidence            997432       2566666    45999943 455443111001   112355666554 99999974

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.93  E-value=5.6e-25  Score=214.60  Aligned_cols=284  Identities=9%  Similarity=0.056  Sum_probs=193.2

Q ss_pred             cccccchhccccccchhhccC-CCCceEEEEEecCC---------CeeEEEEeCCCCCccccCCCCCCCCcee---EEee
Q 046684           27 SVCSHWHTCAKLYHLHSVSQH-RRPAWFLALPTRNR---------GLCCYVHNPVSDKWHVLSLDFLPYPVRP---VSSI   93 (373)
Q Consensus        27 ~Vck~W~~li~~~~f~~~~~~-~~~~~l~~~~~~~~---------~~~~~~~d~~~~~w~~~~~~~~~~~~~~---~~~~   93 (373)
                      ....+|..+...|........ +....++++++...         ...++.||+.+++|..++.++.++..++   +...
T Consensus       173 p~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~  252 (656)
T 1k3i_A          173 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG  252 (656)
T ss_dssp             TTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT
T ss_pred             CCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC
Confidence            344678776655541111111 22445666655322         1468889999999999976666665543   3346


Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEE-EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIV-MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      +|.||++||... .++++|||.+++|+++++|+.+|..++++++ +           ++||++||..    .+......+
T Consensus       253 ~g~lyv~GG~~~-~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d-----------g~iyv~GG~~----~~~~~~~~~  316 (656)
T 1k3i_A          253 NGQIVVTGGNDA-KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD-----------GRVFTIGGSW----SGGVFEKNG  316 (656)
T ss_dssp             TSCEEEECSSST-TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT-----------SCEEEECCCC----CSSSCCCCE
T ss_pred             CCCEEEeCCCCC-CceEEecCcCCceeECCCCCccccccceEEecC-----------CeEEEEeCcc----cCCcccccc
Confidence            999999999643 3799999999999999999999999888887 5           8999999953    144456789


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC--------ceEEEEEECCCCcEEecccCCCC---
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR--------AYSVIGFDIESNTWRELSAPMAD---  241 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--------~~~i~~yd~~~~~w~~~~~~~p~---  241 (373)
                      ++||+.+++|+.++..... .. ... ....++..++++|++||..        ...+..||+++++|.......+.   
T Consensus       317 e~yd~~t~~W~~~~~~~~~-p~-~~~-~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~  393 (656)
T 1k3i_A          317 EVYSPSSKTWTSLPNAKVN-PM-LTA-DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG  393 (656)
T ss_dssp             EEEETTTTEEEEETTSCSG-GG-CCC-CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred             eEeCCCCCcceeCCCcccc-cc-ccc-cccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence            9999999999998543210 00 112 2234555789999998532        46789999999998754222221   


Q ss_pred             ---CCCceeEEE---ECCEEEEEEeecCC------c--eEEEEeecCCCCCCeEEEE--eechhhhhhhcCCCCCCCceE
Q 046684          242 ---RLEFATLVS---RNQKLTLIGGTCGG------D--ACVWELSEGGDDDIWCLIE--KVPIEMGMRLSGGKASWGGTR  305 (373)
Q Consensus       242 ---~~~~~~~~~---~~g~l~~~gg~~~~------~--~~i~~~~~~~~~~~W~~v~--~~p~~~~~~~~~~~~~~~~~~  305 (373)
                         .+.....+.   .+++||++||....      .  ..++.++.  ++++|+.+.  .||.++..           +.
T Consensus       394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~mp~~R~~-----------~~  460 (656)
T 1k3i_A          394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSPNTVFASNGLYFARTF-----------HT  460 (656)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCCEEEECTTCCSSCCBS-----------CE
T ss_pred             cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCCeeEEccCCCCCCccc-----------CC
Confidence               122222232   48999999996421      0  13343433  558999987  78876643           44


Q ss_pred             EEe-cCCEEEEEEcCC-----------ccEEEEEccccCCcccEEEecccccC
Q 046684          306 CAA-GNGAICLYREVG-----------LGMIIWREDEDKRKWEWVWVGGCCLT  346 (373)
Q Consensus       306 ~~~-~~~~i~~~~~~~-----------~~~~~yd~~~~~~~~~W~~~~~~~~~  346 (373)
                      ++. .+++||++||..           ..+++||++  ++  +|+.++..|.+
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~--t~--~W~~~~~~~~~  509 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--QD--TFYKQNPNSIV  509 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--GT--EEEECCCCSSC
T ss_pred             eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC--CC--ceeecCCCCCc
Confidence            444 499999999743           468999999  99  99988765543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.88  E-value=4.1e-22  Score=194.36  Aligned_cols=243  Identities=15%  Similarity=0.069  Sum_probs=168.1

Q ss_pred             EEEEeCCCCCccccCCCCCCCCceeEEee--CcEEEEeeCCCC---------ceEEEEEcCcccceeccCCCCCCCCCCe
Q 046684           65 CYVHNPVSDKWHVLSLDFLPYPVRPVSSI--GSFLLLRPINST---------ILQLVLCNPFTRQFRYLPLLNVSRTNPA  133 (373)
Q Consensus        65 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~~--~g~l~~~gg~~~---------~~~~~v~np~t~~w~~lp~~~~~~~~~~  133 (373)
                      +..|||.+++|..+.++  |+..+.++..  +|.||++||...         ...+++|||.|++|+.+++++.++..++
T Consensus       168 ~~~~dp~~~~W~~~~~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~  245 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC  245 (656)
T ss_dssp             CCCCCTTSCEEEEEEEC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred             cccCCCCCCeeeeeccC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence            44578999999987544  3333344544  999999987522         2478999999999999998887776554


Q ss_pred             --EEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCE
Q 046684          134 --VGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGM  210 (373)
Q Consensus       134 --~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~  210 (373)
                        .++..+          ++||++||..     .    ..+++||+.+++|+++++||       ..|..++++.+ +|+
T Consensus       246 ~~~~~~~~----------g~lyv~GG~~-----~----~~v~~yd~~t~~W~~~~~~~-------~~R~~~s~~~~~dg~  299 (656)
T 1k3i_A          246 PGISMDGN----------GQIVVTGGND-----A----KKTSLYDSSSDSWIPGPDMQ-------VARGYQSSATMSDGR  299 (656)
T ss_dssp             CEEEECTT----------SCEEEECSSS-----T----TCEEEEEGGGTEEEECCCCS-------SCCSSCEEEECTTSC
T ss_pred             ccccCCCC----------CCEEEeCCCC-----C----CceEEecCcCCceeECCCCC-------ccccccceEEecCCe
Confidence              332221          8999999976     2    27999999999999999884       45777787888 999


Q ss_pred             EEEEEcC-----CceEEEEEECCCCcEEecc----cCCCCCCCceeEEEECCEEEEEEeecCC--------ceEEEEeec
Q 046684          211 LYWITSA-----RAYSVIGFDIESNTWRELS----APMADRLEFATLVSRNQKLTLIGGTCGG--------DACVWELSE  273 (373)
Q Consensus       211 ly~~gg~-----~~~~i~~yd~~~~~w~~~~----~~~p~~~~~~~~~~~~g~l~~~gg~~~~--------~~~i~~~~~  273 (373)
                      +|++||.     ....+.+||+++++|+.++    .|++..+. ..++..++++|++||.++.        .++.|+++.
T Consensus       300 iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~  378 (656)
T 1k3i_A          300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  378 (656)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCC
Confidence            9999873     2468999999999999873    24444433 2455578999999986542        266777754


Q ss_pred             CCCCCCeEEEEeechh-hhhhhcCCCCCCCceEEE---ecCCEEEEEEcCC--------c---cEEEEEccccCCcccEE
Q 046684          274 GGDDDIWCLIEKVPIE-MGMRLSGGKASWGGTRCA---AGNGAICLYREVG--------L---GMIIWREDEDKRKWEWV  338 (373)
Q Consensus       274 ~~~~~~W~~v~~~p~~-~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~--------~---~~~~yd~~~~~~~~~W~  338 (373)
                          +.|......... +...  .   ......++   ..+++||++||..        .   .+.+||++  ++  +|+
T Consensus       379 ----~~w~~~~~~~~~~~~~~--~---~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~--~~--~W~  445 (656)
T 1k3i_A          379 ----SGDVKSAGKRQSNRGVA--P---DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG--TS--PNT  445 (656)
T ss_dssp             ----TCEEEEEEECEETTEEC--C---CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT--SC--CEE
T ss_pred             ----cceeecCCccccccccC--C---CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC--CC--Cee
Confidence                787654332211 0000  0   00012233   3689999999842        1   68899999  99  999


Q ss_pred             EecccccCCCC
Q 046684          339 WVGGCCLTGGK  349 (373)
Q Consensus       339 ~~~~~~~~~~~  349 (373)
                      .+..-+++..|
T Consensus       446 ~~~~~~mp~~R  456 (656)
T 1k3i_A          446 VFASNGLYFAR  456 (656)
T ss_dssp             EECTTCCSSCC
T ss_pred             EEccCCCCCCc
Confidence            88623344444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.22  E-value=1.1e-08  Score=94.56  Aligned_cols=44  Identities=27%  Similarity=0.405  Sum_probs=39.7

Q ss_pred             CCCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684            1 MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         1 ~~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      +++.||+||+.+||+.|++++|+++..|||+|+.++.++.+.+.
T Consensus        18 ~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~   61 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE   61 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred             hhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhh
Confidence            36789999999999999999999999999999999988766654

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.18  E-value=8.6e-12  Score=78.38  Aligned_cols=42  Identities=31%  Similarity=0.532  Sum_probs=39.4

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS   43 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~   43 (373)
                      |..||+|++.+||++||.++++++++|||+|+.++.++.+.+
T Consensus         9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            789999999999999999999999999999999999988765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.09  E-value=1.3e-08  Score=94.48  Aligned_cols=37  Identities=16%  Similarity=0.453  Sum_probs=35.1

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhcccc
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKL   38 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~   38 (373)
                      ++.||+||+.+||+.||+++|+++..|||+|+.++.+
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            4579999999999999999999999999999999987

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.08  E-value=4.1e-09  Score=97.33  Aligned_cols=42  Identities=29%  Similarity=0.434  Sum_probs=37.3

Q ss_pred             CCcchHH----HHHHHHhcCChhhHHHhhcccccchhccccccchh
Q 046684            2 WSNLHLD----VLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS   43 (373)
Q Consensus         2 ~~~Lp~d----ll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~   43 (373)
                      ++.||+|    |+.+||+.|++++|+++.+|||+|+.++.++.+.+
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~   56 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            3579999    99999999999999999999999999997765544

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.87  E-value=5.7e-10  Score=95.31  Aligned_cols=43  Identities=19%  Similarity=0.310  Sum_probs=41.3

Q ss_pred             CCcchHHHHHHHHhcCChhhHH-Hhhcccccchhccccccchhh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLA-RAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~-r~r~Vck~W~~li~~~~f~~~   44 (373)
                      +..||+|||.+||+|||+++|+ |+++|||+|+.|++++.|.+.
T Consensus        51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~   94 (297)
T 2e31_A           51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLL   94 (297)
T ss_dssp             TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHH
Confidence            5789999999999999999999 999999999999999999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.30  E-value=0.00048  Score=60.63  Aligned_cols=224  Identities=6%  Similarity=-0.070  Sum_probs=124.6

Q ss_pred             CeeEEEEeCCCCCcccc-----CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccce-eccCCCCCCCCCCeEE
Q 046684           62 GLCCYVHNPVSDKWHVL-----SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQF-RYLPLLNVSRTNPAVG  135 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~-----~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~  135 (373)
                      ...+..+|+.+.+....     ....+......++..++.+|+....  ...+.++|+.|++. ..++....   ...++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~--~~~v~viD~~t~~~~~~i~~~~~---p~~i~   90 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN--SHVIFAIDINTFKEVGRITGFTS---PRYIH   90 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG--GTEEEEEETTTCCEEEEEECCSS---EEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC--CCEEEEEECcccEEEEEcCCCCC---CcEEE
Confidence            46788899998876432     1111222234466679999998763  46899999999886 33543222   12333


Q ss_pred             EEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEE
Q 046684          136 IVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWIT  215 (373)
Q Consensus       136 ~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~g  215 (373)
                      +..+          +++|+.....          ..+.++|..+++-...-..+.. .  ........++..++++|+..
T Consensus        91 ~~~~----------g~lyv~~~~~----------~~v~~iD~~t~~~~~~i~~g~~-~--~~~~~p~~i~~~~~~lyv~~  147 (328)
T 3dsm_A           91 FLSD----------EKAYVTQIWD----------YRIFIINPKTYEITGYIECPDM-D--MESGSTEQMVQYGKYVYVNC  147 (328)
T ss_dssp             EEET----------TEEEEEEBSC----------SEEEEEETTTTEEEEEEECTTC-C--TTTCBCCCEEEETTEEEEEE
T ss_pred             EeCC----------CeEEEEECCC----------CeEEEEECCCCeEEEEEEcCCc-c--ccCCCcceEEEECCEEEEEc
Confidence            3221          7898876332          4789999998774322111100 0  00001233455788999984


Q ss_pred             cCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC-------ceEEEEeecCCCCCCeEEEEeech
Q 046684          216 SARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG-------DACVWELSEGGDDDIWCLIEKVPI  288 (373)
Q Consensus       216 g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~-------~~~i~~~~~~~~~~~W~~v~~~p~  288 (373)
                      ......|.++|+++++.... .+....- ......-+|++|+.......       .-.++.++.  ++.+......++.
T Consensus       148 ~~~~~~v~viD~~t~~~~~~-i~~g~~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~--~t~~v~~~~~~~~  223 (328)
T 3dsm_A          148 WSYQNRILKIDTETDKVVDE-LTIGIQP-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA--ETFTVEKQFKFKL  223 (328)
T ss_dssp             CTTCCEEEEEETTTTEEEEE-EECSSCB-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET--TTTEEEEEEECCT
T ss_pred             CCCCCEEEEEECCCCeEEEE-EEcCCCc-cceEEcCCCCEEEEECCCccCCccccCCceEEEEEC--CCCeEEEEEecCC
Confidence            22467899999999876543 2222111 11122346888887643200       124555544  3354333223332


Q ss_pred             hhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEccccCC
Q 046684          289 EMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ...           +..++.  .++.+|+.+.   .++++|++  ++
T Consensus       224 g~~-----------p~~la~~~d~~~lyv~~~---~v~~~d~~--t~  254 (328)
T 3dsm_A          224 GDW-----------PSEVQLNGTRDTLYWINN---DIWRMPVE--AD  254 (328)
T ss_dssp             TCC-----------CEEEEECTTSCEEEEESS---SEEEEETT--CS
T ss_pred             CCC-----------ceeEEEecCCCEEEEEcc---EEEEEECC--CC
Confidence            211           233333  3778888765   69999999  87

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.10  E-value=0.0024  Score=56.14  Aligned_cols=177  Identities=8%  Similarity=-0.020  Sum_probs=102.2

Q ss_pred             ceEEEEEcCcccceecc-C----CCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCC
Q 046684          106 ILQLVLCNPFTRQFRYL-P----LLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHD  180 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~l-p----~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~  180 (373)
                      ...+.++|+.|++...- .    ..+.......+++.+           .++|+.....          ..+.++|..++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-----------~~lyv~~~~~----------~~v~viD~~t~   74 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-----------GIGWIVVNNS----------HVIFAIDINTF   74 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-----------TEEEEEEGGG----------TEEEEEETTTC
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-----------CEEEEEEcCC----------CEEEEEECccc
Confidence            56899999999987542 1    111111112333322           8899986432          57899999987


Q ss_pred             ce-eeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCC----CCceeEEEECCE
Q 046684          181 AW-QIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADR----LEFATLVSRNQK  254 (373)
Q Consensus       181 ~W-~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~----~~~~~~~~~~g~  254 (373)
                      +- ..++...          ....+++ -+|++|+.. .....|.++|+++.+.... .+.+..    ..-.+++..+++
T Consensus        75 ~~~~~i~~~~----------~p~~i~~~~~g~lyv~~-~~~~~v~~iD~~t~~~~~~-i~~g~~~~~~~~p~~i~~~~~~  142 (328)
T 3dsm_A           75 KEVGRITGFT----------SPRYIHFLSDEKAYVTQ-IWDYRIFIINPKTYEITGY-IECPDMDMESGSTEQMVQYGKY  142 (328)
T ss_dssp             CEEEEEECCS----------SEEEEEEEETTEEEEEE-BSCSEEEEEETTTTEEEEE-EECTTCCTTTCBCCCEEEETTE
T ss_pred             EEEEEcCCCC----------CCcEEEEeCCCeEEEEE-CCCCeEEEEECCCCeEEEE-EEcCCccccCCCcceEEEECCE
Confidence            75 3333221          1122344 678999884 2467899999999876532 222220    022345557899


Q ss_pred             EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----------ccEE
Q 046684          255 LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG----------LGMI  324 (373)
Q Consensus       255 l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~  324 (373)
                      ||+........+.+++++.    .+.  +..++.....          ....+..++++|+.....          ..+.
T Consensus       143 lyv~~~~~~~~v~viD~~t----~~~--~~~i~~g~~p----------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~  206 (328)
T 3dsm_A          143 VYVNCWSYQNRILKIDTET----DKV--VDELTIGIQP----------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLY  206 (328)
T ss_dssp             EEEEECTTCCEEEEEETTT----TEE--EEEEECSSCB----------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred             EEEEcCCCCCEEEEEECCC----CeE--EEEEEcCCCc----------cceEEcCCCCEEEEECCCccCCccccCCceEE
Confidence            9998531233456666543    433  3333322111          123334568888876543          6799


Q ss_pred             EEEccccCC
Q 046684          325 IWREDEDKR  333 (373)
Q Consensus       325 ~yd~~~~~~  333 (373)
                      ++|++  ++
T Consensus       207 ~id~~--t~  213 (328)
T 3dsm_A          207 RIDAE--TF  213 (328)
T ss_dssp             EEETT--TT
T ss_pred             EEECC--CC
Confidence            99999  88

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.06  E-value=0.0021  Score=57.46  Aligned_cols=219  Identities=12%  Similarity=0.061  Sum_probs=124.5

Q ss_pred             eeEEEEeCCCC--CccccCCCC-------CCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCC
Q 046684           63 LCCYVHNPVSD--KWHVLSLDF-------LPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTN  131 (373)
Q Consensus        63 ~~~~~~d~~~~--~w~~~~~~~-------~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~  131 (373)
                      ..+.++|..+.  .|..-....       ........+..++.||+...   ...++.+|+.|++  |+.-..  ... .
T Consensus        63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---~g~l~a~d~~tG~~~W~~~~~--~~~-~  136 (376)
T 3q7m_A           63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE---KAQVYALNTSDGTVAWQTKVA--GEA-L  136 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---TSEEEEEETTTCCEEEEEECS--SCC-C
T ss_pred             CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---CCEEEEEECCCCCEEEEEeCC--Cce-E
Confidence            47788998765  465432111       11112335677999999776   4689999999886  543211  111 1


Q ss_pred             CeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECC
Q 046684          132 PAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRG  209 (373)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g  209 (373)
                      ....+.+           +.||+.. .+          ..+..||.++++  |+.-...+.     ...+.....+..++
T Consensus       137 ~~p~~~~-----------~~v~v~~-~~----------g~l~~~d~~tG~~~W~~~~~~~~-----~~~~~~~~~~~~~~  189 (376)
T 3q7m_A          137 SRPVVSD-----------GLVLIHT-SN----------GQLQALNEADGAVKWTVNLDMPS-----LSLRGESAPTTAFG  189 (376)
T ss_dssp             SCCEEET-----------TEEEEEC-TT----------SEEEEEETTTCCEEEEEECCC----------CCCCCCEEETT
T ss_pred             cCCEEEC-----------CEEEEEc-CC----------CeEEEEECCCCcEEEEEeCCCCc-----eeecCCCCcEEECC
Confidence            1112222           6677643 22          368999998876  876544321     11122234466688


Q ss_pred             EEEEEEcCCceEEEEEECCCC--cEEecccCCCCCC--------CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCC
Q 046684          210 MLYWITSARAYSVIGFDIESN--TWRELSAPMADRL--------EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDI  279 (373)
Q Consensus       210 ~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~~--------~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~  279 (373)
                      .+|+-  .....+.++|++++  .|+.- ...+...        .....+..++.+|+.+.  ...+..++.+.  .+..
T Consensus       190 ~v~~g--~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~--~g~l~~~d~~t--G~~~  262 (376)
T 3q7m_A          190 AAVVG--GDNGRVSAVLMEQGQMIWQQR-ISQATGSTEIDRLSDVDTTPVVVNGVVFALAY--NGNLTALDLRS--GQIM  262 (376)
T ss_dssp             EEEEC--CTTTEEEEEETTTCCEEEEEE-CCC-----------CCCCCCEEETTEEEEECT--TSCEEEEETTT--CCEE
T ss_pred             EEEEE--cCCCEEEEEECCCCcEEEEEe-cccCCCCcccccccccCCCcEEECCEEEEEec--CcEEEEEECCC--CcEE
Confidence            88774  34568999999876  46644 2222111        12234456788887642  22355666654  3345


Q ss_pred             eEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEe
Q 046684          280 WCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       280 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      |+.-  .+.              ....+..++.||+... .+.+.++|++  +++..|+.-
T Consensus       263 w~~~--~~~--------------~~~~~~~~~~l~~~~~-~g~l~~~d~~--tG~~~w~~~  304 (376)
T 3q7m_A          263 WKRE--LGS--------------VNDFIVDGNRIYLVDQ-NDRVMALTID--GGVTLWTQS  304 (376)
T ss_dssp             EEEC--CCC--------------EEEEEEETTEEEEEET-TCCEEEEETT--TCCEEEEEC
T ss_pred             eecc--CCC--------------CCCceEECCEEEEEcC-CCeEEEEECC--CCcEEEeec
Confidence            7642  111              1334556888988664 4579999999  887778753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.05  E-value=0.0054  Score=53.85  Aligned_cols=222  Identities=12%  Similarity=0.050  Sum_probs=113.5

Q ss_pred             CeeEEEEeCCCCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCC------CCCe
Q 046684           62 GLCCYVHNPVSDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSR------TNPA  133 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~------~~~~  133 (373)
                      ...+..+|+.+.+.... +....+ ....+...++.+|+.+..  ...+.++|+.+++-.. ++......      ....
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLKP-FGATINNTTQTLWFGNTV--NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR  144 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCC-CSEEEETTTTEEEEEETT--TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE
T ss_pred             CccEEEEcCCCCeEEEEEecCCCc-ceEEECCCCCEEEEEecC--CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc
Confidence            36788899887654332 222111 222233445568877653  4589999999987533 22211100      0011


Q ss_pred             EEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EE
Q 046684          134 VGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-ML  211 (373)
Q Consensus       134 ~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~l  211 (373)
                      ..... +.+       .++|+.+...         ...+.++|..+++-...-...        .......++. +| .+
T Consensus       145 ~~~~s-~dg-------~~l~~~~~~~---------~~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          145 ELVAD-DAT-------NTVYISGIGK---------ESVIWVVDGGNIKLKTAIQNT--------GKMSTGLALDSEGKRL  199 (353)
T ss_dssp             EEEEE-TTT-------TEEEEEEESS---------SCEEEEEETTTTEEEEEECCC--------CTTCCCCEEETTTTEE
T ss_pred             eEEEC-CCC-------CEEEEEecCC---------CceEEEEcCCCCceEEEecCC--------CCccceEEECCCCCEE
Confidence            12222 211       5577765221         246899999876532221110        1111222332 44 46


Q ss_pred             EEEEcCCceEEEEEECCCCcEEecccCCCC--CC-CceeEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          212 YWITSARAYSVIGFDIESNTWRELSAPMAD--RL-EFATLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       212 y~~gg~~~~~i~~yd~~~~~w~~~~~~~p~--~~-~~~~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      |+..  ....+..+|+.+.+-... .+.+.  .. ....++.. +| .||+.. .....+.+|+++.    .+-......
T Consensus       200 ~~~~--~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~----~~~~~~~~~  271 (353)
T 3vgz_A          200 YTTN--ADGELITIDTADNKILSR-KKLLDDGKEHFFINISLDTARQRAFITD-SKAAEVLVVDTRN----GNILAKVAA  271 (353)
T ss_dssp             EEEC--TTSEEEEEETTTTEEEEE-EECCCSSSCCCEEEEEEETTTTEEEEEE-SSSSEEEEEETTT----CCEEEEEEC
T ss_pred             EEEc--CCCeEEEEECCCCeEEEE-EEcCCCCCCcccceEEECCCCCEEEEEe-CCCCEEEEEECCC----CcEEEEEEc
Confidence            6552  357889999998765433 22211  11 11223333 44 465554 3334467777644    433222222


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +.+            ....+...++.+|+.+...+.+.+||.+  +.
T Consensus       272 ~~~------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~--~~  304 (353)
T 3vgz_A          272 PES------------LAVLFNPARNEAYVTHRQAGKVSVIDAK--SY  304 (353)
T ss_dssp             SSC------------CCEEEETTTTEEEEEETTTTEEEEEETT--TT
T ss_pred             CCC------------ceEEECCCCCEEEEEECCCCeEEEEECC--CC
Confidence            211            0244444567799988777889999999  77

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.97  E-value=1.3e-06  Score=73.78  Aligned_cols=43  Identities=30%  Similarity=0.408  Sum_probs=40.6

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      +..||+|++..||+.|++++|+++.+|||+|+.+.+++..++.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~   47 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRY   47 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            4689999999999999999999999999999999999988876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.94  E-value=0.0022  Score=57.42  Aligned_cols=204  Identities=11%  Similarity=0.052  Sum_probs=111.1

Q ss_pred             eEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCC-----CCCCeEEEEEcCCCCCCCCCceEEEEEeccCCC
Q 046684           89 PVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVS-----RTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDE  161 (373)
Q Consensus        89 ~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~-----~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~  161 (373)
                      ..+..++.||+...   ...++.+|+.|++  |+.-......     ..........++         ++||+....   
T Consensus        48 ~p~v~~~~v~~~~~---~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~v~~~~---  112 (376)
T 3q7m_A           48 HPALADNVVYAADR---AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG---------GHVYIGSEK---  112 (376)
T ss_dssp             CCEEETTEEEEECT---TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET---------TEEEEEETT---
T ss_pred             ccEEECCEEEEEcC---CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC---------CEEEEEcCC---
Confidence            35567999999876   4689999999876  5442211100     111111111111         778875422   


Q ss_pred             CCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc--EEeccc
Q 046684          162 PRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT--WRELSA  237 (373)
Q Consensus       162 ~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~--w~~~~~  237 (373)
                              ..+..+|.++++  |+.-..-+          .....+..++.+|+..  ....+.+||+++++  |+.- .
T Consensus       113 --------g~l~a~d~~tG~~~W~~~~~~~----------~~~~p~~~~~~v~v~~--~~g~l~~~d~~tG~~~W~~~-~  171 (376)
T 3q7m_A          113 --------AQVYALNTSDGTVAWQTKVAGE----------ALSRPVVSDGLVLIHT--SNGQLQALNEADGAVKWTVN-L  171 (376)
T ss_dssp             --------SEEEEEETTTCCEEEEEECSSC----------CCSCCEEETTEEEEEC--TTSEEEEEETTTCCEEEEEE-C
T ss_pred             --------CEEEEEECCCCCEEEEEeCCCc----------eEcCCEEECCEEEEEc--CCCeEEEEECCCCcEEEEEe-C
Confidence                    368999998776  76543221          1223366788888763  45689999998775  7755 2


Q ss_pred             CCCCC--CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh--hhhcCCCCCCCceEEEecCCEE
Q 046684          238 PMADR--LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG--MRLSGGKASWGGTRCAAGNGAI  313 (373)
Q Consensus       238 ~~p~~--~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~i  313 (373)
                      +.+..  +.....+..++.+++.  .....+..++.++  .+..|+.-...+....  ..+...     ....+..++.|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~v~~g--~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~v  242 (376)
T 3q7m_A          172 DMPSLSLRGESAPTTAFGAAVVG--GDNGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDV-----DTTPVVVNGVV  242 (376)
T ss_dssp             CC-----CCCCCCEEETTEEEEC--CTTTEEEEEETTT--CCEEEEEECCC-----------CC-----CCCCEEETTEE
T ss_pred             CCCceeecCCCCcEEECCEEEEE--cCCCEEEEEECCC--CcEEEEEecccCCCCccccccccc-----CCCcEEECCEE
Confidence            22211  1123344557776663  2233355566554  4456765433222110  000000     12223457888


Q ss_pred             EEEEcCCccEEEEEccccCCcccEEEe
Q 046684          314 CLYREVGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       314 ~~~~~~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      |+.. ..+.+.++|++  +++..|+.-
T Consensus       243 ~~~~-~~g~l~~~d~~--tG~~~w~~~  266 (376)
T 3q7m_A          243 FALA-YNGNLTALDLR--SGQIMWKRE  266 (376)
T ss_dssp             EEEC-TTSCEEEEETT--TCCEEEEEC
T ss_pred             EEEe-cCcEEEEEECC--CCcEEeecc
Confidence            8854 34579999999  887778753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.88  E-value=0.004  Score=54.83  Aligned_cols=255  Identities=10%  Similarity=-0.026  Sum_probs=122.3

Q ss_pred             eeEEEEeCCCCCccccCC-CCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHVLSL-DFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~-~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..++.+|+.+.+...+.. ...........+-+|.+|+.+.......+.+||..+++.+.+.........+....+. +.
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s-pd   96 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD-EA   96 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE-TT
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC-CC
Confidence            456667887777655421 1122222234455777777664223468999999888776654432222222222232 11


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECC-CCceeeecCCCccccccc--eeccCCceEEE--CCEEEEEEc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR-HDAWQIIGSMPVEFAVRL--TVWTPNESVCT--RGMLYWITS  216 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~~~~~~--~~~~~~~~~~~--~g~ly~~gg  216 (373)
                      +       ..+|+.+..+          ..+.+|+.. +++.+.+...+..-..|.  ........+.+  +|++|+. .
T Consensus        97 g-------~~l~~~~~~~----------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~-~  158 (347)
T 3hfq_A           97 R-------QLVYSANYHK----------GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVI-D  158 (347)
T ss_dssp             T-------TEEEEEETTT----------TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEE-E
T ss_pred             C-------CEEEEEeCCC----------CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEE-e
Confidence            1       4566655222          357777774 334443322210000000  00001111222  5777766 4


Q ss_pred             CCceEEEEEECC-CCcEEeccc-CCCCCCCceeEEE-ECCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          217 ARAYSVIGFDIE-SNTWRELSA-PMADRLEFATLVS-RNQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       217 ~~~~~i~~yd~~-~~~w~~~~~-~~p~~~~~~~~~~-~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      .....+..||+. +++...+.. ..+....-..++. -+|+ ||+.+ .....+.+|+++.  .+.+++.+..+......
T Consensus       159 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~-~~~~~v~v~~~~~--~~g~~~~~~~~~~~~~~  235 (347)
T 3hfq_A          159 LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG-ELSSQIASLKYDT--QTGAFTQLGIVKTIPAD  235 (347)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEEEET--TTTEEEEEEEEESSCTT
T ss_pred             CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe-CCCCEEEEEEecC--CCCceEEeeeeeecCCC
Confidence            445689999988 555554311 1111111112222 3666 55544 3444578999885  45677665543321100


Q ss_pred             hhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccc
Q 046684          293 RLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCC  344 (373)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~  344 (373)
                       +... .......+...|..||+.+...+.+.+||++. .+  +.+.+...+
T Consensus       236 -~~~~-~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-~g--~~~~~~~~~  282 (347)
T 3hfq_A          236 -YTAH-NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-DG--HLTLIQQIS  282 (347)
T ss_dssp             -CCSC-CEEEEEEECTTSCEEEEEEETTTEEEEEEECG-GG--CEEEEEEEE
T ss_pred             -CCCC-CcceeEEECCCCCEEEEEeCCCCEEEEEEECC-CC--cEEEeEEEe
Confidence             0000 00001222223456888877677899999851 33  445444433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.87  E-value=0.0042  Score=52.53  Aligned_cols=203  Identities=10%  Similarity=-0.067  Sum_probs=114.2

Q ss_pred             eeEEeeC-cEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684           88 RPVSSIG-SFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA  166 (373)
Q Consensus        88 ~~~~~~~-g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~  166 (373)
                      +.+...+ |.+|+..|....+.+.++|+.|++-..--+++.......++..+           .++|+..-.+       
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-----------~~lyv~t~~~-------   85 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-----------EKLYQVVWLK-------   85 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-----------TEEEEEETTC-------
T ss_pred             ccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-----------CEEEEEEecC-------
Confidence            3455544 89999887555689999999999865432222222222333332           7899986432       


Q ss_pred             cccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEE-ecccC---CCCC
Q 046684          167 TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWR-ELSAP---MADR  242 (373)
Q Consensus       167 ~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~-~~~~~---~p~~  242 (373)
                         ..+.+||..+.+  .+..+|.+      ...+...+.-++.+|+..  ..+.+..+|+++.+-. .++..   .|..
T Consensus        86 ---~~v~viD~~t~~--v~~~i~~g------~~~g~glt~Dg~~l~vs~--gs~~l~viD~~t~~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           86 ---NIGFIYDRRTLS--NIKNFTHQ------MKDGWGLATDGKILYGSD--GTSILYEIDPHTFKLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             ---SEEEEEETTTTE--EEEEEECC------SSSCCEEEECSSSEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             ---CEEEEEECCCCc--EEEEEECC------CCCeEEEEECCCEEEEEC--CCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence               578999998754  23323210      011222222245677653  4679999999986543 33111   1111


Q ss_pred             CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhh---cCCCCCCCceEEEe--cCCEEEEEE
Q 046684          243 LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRL---SGGKASWGGTRCAA--GNGAICLYR  317 (373)
Q Consensus       243 ~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~---~~~~~~~~~~~~~~--~~~~i~~~~  317 (373)
                      .. ..+...+|+||+-... ..  .|...+.    .+.+.+..++.......   ...........++.  .++.+|+.+
T Consensus       153 ~~-nele~~dg~lyvn~~~-~~--~V~vID~----~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          153 RL-NELEYINGEVWANIWQ-TD--CIARISA----KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             CE-EEEEEETTEEEEEETT-SS--EEEEEET----TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             cc-eeEEEECCEEEEecCC-CC--eEEEEEC----CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            11 1334448999865432 22  5777766    66667777665322100   00000001233333  467999999


Q ss_pred             cCCccEEEEEcc
Q 046684          318 EVGLGMIIWRED  329 (373)
Q Consensus       318 ~~~~~~~~yd~~  329 (373)
                      ...++++..++.
T Consensus       225 k~~~~v~~i~l~  236 (266)
T 2iwa_A          225 KLWPKLFEIKLH  236 (266)
T ss_dssp             TTCSEEEEEEEE
T ss_pred             CCCCeEEEEEEe
Confidence            998899999988

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.85  E-value=0.004  Score=51.71  Aligned_cols=183  Identities=17%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES  229 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~  229 (373)
                      +.+|.-.|..     +   .+.+.++|+++++=.....+|.       .......+..++++|.+. ...+.+.+||+++
T Consensus        31 ~~LyestG~~-----g---~S~v~~vD~~tgkv~~~~~l~~-------~~fgeGi~~~~~~ly~lt-w~~~~v~v~D~~t   94 (243)
T 3mbr_X           31 GHLYESTGET-----G---RSSVRKVDLETGRILQRAEVPP-------PYFGAGIVAWRDRLIQLT-WRNHEGFVYDLAT   94 (243)
T ss_dssp             TEEEEEECCT-----T---SCEEEEEETTTCCEEEEEECCT-------TCCEEEEEEETTEEEEEE-SSSSEEEEEETTT
T ss_pred             CEEEEECCCC-----C---CceEEEEECCCCCEEEEEeCCC-------CcceeEEEEeCCEEEEEE-eeCCEEEEEECCc
Confidence            7799887654     2   4678999999988654444431       112234567789999994 5678999999987


Q ss_pred             CcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec
Q 046684          230 NTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG  309 (373)
Q Consensus       230 ~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~  309 (373)
                      -+-..- .+.+  ..+.+++.-+++||+..|.  .  .++.++.    .+-+.+..++...-..-.     ...-.+...
T Consensus        95 l~~~~t-i~~~--~~Gwglt~dg~~L~vSdgs--~--~l~~iDp----~t~~~~~~I~V~~~g~~~-----~~lNeLe~~  158 (243)
T 3mbr_X           95 LTPRAR-FRYP--GEGWALTSDDSHLYMSDGT--A--VIRKLDP----DTLQQVGSIKVTAGGRPL-----DNLNELEWV  158 (243)
T ss_dssp             TEEEEE-EECS--SCCCEEEECSSCEEEECSS--S--EEEEECT----TTCCEEEEEECEETTEEC-----CCEEEEEEE
T ss_pred             CcEEEE-EeCC--CCceEEeeCCCEEEEECCC--C--eEEEEeC----CCCeEEEEEEEccCCccc-----ccceeeEEe
Confidence            654432 2333  2455666667788887652  2  4666655    444455554432211000     001122334


Q ss_pred             CCEEEEEEcCCccEEEEEccccCCcc-cEEEecccccCCCC--cccccceeEEEeccccc
Q 046684          310 NGAICLYREVGLGMIIWREDEDKRKW-EWVWVGGCCLTGGK--QVQNVPMRGVLLHPSLA  366 (373)
Q Consensus       310 ~~~i~~~~~~~~~~~~yd~~~~~~~~-~W~~~~~~~~~~~~--~~~~~~~~~~~~~p~l~  366 (373)
                      +++||+-...++.|.+-|++  ++++ .|..+.++--....  .-....+.|+.|.|.=+
T Consensus       159 ~G~lyanvw~s~~I~vIDp~--tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~  216 (243)
T 3mbr_X          159 NGELLANVWLTSRIARIDPA--SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD  216 (243)
T ss_dssp             TTEEEEEETTTTEEEEECTT--TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred             CCEEEEEECCCCeEEEEECC--CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence            88999877677889999999  8843 24334333111100  00123578899988543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.78  E-value=0.0028  Score=53.14  Aligned_cols=182  Identities=11%  Similarity=-0.025  Sum_probs=105.6

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES  229 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~  229 (373)
                      +.+|.-.|..     +   .+.+.++|+++++=.....++.       .......+..++++|++. ...+.+.+||+++
T Consensus        53 ~~LyestG~~-----g---~S~v~~vD~~Tgkv~~~~~l~~-------~~FgeGit~~g~~ly~lt-w~~~~v~v~D~~t  116 (262)
T 3nol_A           53 GYFYESTGLN-----G---RSSIRKVDIESGKTLQQIELGK-------RYFGEGISDWKDKIVGLT-WKNGLGFVWNIRN  116 (262)
T ss_dssp             TEEEEEEEET-----T---EEEEEEECTTTCCEEEEEECCT-------TCCEEEEEEETTEEEEEE-SSSSEEEEEETTT
T ss_pred             CEEEEECCCC-----C---CceEEEEECCCCcEEEEEecCC-------ccceeEEEEeCCEEEEEE-eeCCEEEEEECcc
Confidence            7899887654     1   3578999999987544333421       112233566789999994 5678999999987


Q ss_pred             CcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce-EEEe
Q 046684          230 NTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT-RCAA  308 (373)
Q Consensus       230 ~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~-~~~~  308 (373)
                      .+-..- .+.+  ..+.+++.-++.||+..|.   . .++.++.    .+-+.+..++...-.+..      ... .+..
T Consensus       117 ~~~~~t-i~~~--~eG~glt~dg~~L~~SdGs---~-~i~~iDp----~T~~v~~~I~V~~~g~~~------~~lNELe~  179 (262)
T 3nol_A          117 LRQVRS-FNYD--GEGWGLTHNDQYLIMSDGT---P-VLRFLDP----ESLTPVRTITVTAHGEEL------PELNELEW  179 (262)
T ss_dssp             CCEEEE-EECS--SCCCCEEECSSCEEECCSS---S-EEEEECT----TTCSEEEEEECEETTEEC------CCEEEEEE
T ss_pred             CcEEEE-EECC--CCceEEecCCCEEEEECCC---C-eEEEEcC----CCCeEEEEEEeccCCccc------cccceeEE
Confidence            664432 2332  2455666667778887652   2 5666665    444455554442110000      011 1223


Q ss_pred             cCCEEEEEEcCCccEEEEEccccCCcc-cEEEecccccCCC-CcccccceeEEEeccccc
Q 046684          309 GNGAICLYREVGLGMIIWREDEDKRKW-EWVWVGGCCLTGG-KQVQNVPMRGVLLHPSLA  366 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~~~~~~~-~W~~~~~~~~~~~-~~~~~~~~~~~~~~p~l~  366 (373)
                      .++.||+-...++.|.+-|++  ++++ .|..++++.-... ..-....+.|+.|.|.=+
T Consensus       180 ~~G~lyan~w~~~~I~vIDp~--tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          180 VDGEIFANVWQTNKIVRIDPE--TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             ETTEEEEEETTSSEEEEECTT--TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             ECCEEEEEEccCCeEEEEECC--CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence            378999877777889999999  8843 2333332211000 000123578899988533

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.77  E-value=0.002  Score=57.72  Aligned_cols=215  Identities=11%  Similarity=0.030  Sum_probs=108.7

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE-ee-CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS-SI-GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~-~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      ..+..+|..+++....-..  .....+++ +. +..+++.++.  ...+.+||+.+++....-..+.   ... .+...+
T Consensus        12 ~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~--d~~i~v~d~~~~~~~~~~~~~~---~v~-~~~~sp   83 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAGS---SPQ-GVAVSP   83 (391)
T ss_dssp             TEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECSS---SEE-EEEECT
T ss_pred             CEEEEEECCCCeEEEEeec--CCCcceEEECCCCCEEEEECCC--CCeEEEEECCCCeEEEEEECCC---Ccc-ceEECC
Confidence            4677788877654322111  11112222 33 4467676643  4689999999887644322221   111 222211


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCE-EEEEEcCC
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGM-LYWITSAR  218 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~-ly~~gg~~  218 (373)
                      .+       ..+++.+..+          ..+.+||..+++-........         .....++. +|. +|+. +..
T Consensus        84 dg-------~~l~~~~~~~----------~~v~v~d~~~~~~~~~~~~~~---------~~~~~~~s~dg~~l~~~-~~~  136 (391)
T 1l0q_A           84 DG-------KQVYVTNMAS----------STLSVIDTTSNTVAGTVKTGK---------SPLGLALSPDGKKLYVT-NNG  136 (391)
T ss_dssp             TS-------SEEEEEETTT----------TEEEEEETTTTEEEEEEECSS---------SEEEEEECTTSSEEEEE-ETT
T ss_pred             CC-------CEEEEEECCC----------CEEEEEECCCCeEEEEEeCCC---------CcceEEECCCCCEEEEE-eCC
Confidence            11       4566665332          468999998876433322210         11122222 344 6666 455


Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcC
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSG  296 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~  296 (373)
                      ...|..+|+.+++.... ....  .....++.. +|+ |++.+ ..+..+.+|++..    .  +.+..++.....    
T Consensus       137 ~~~v~~~d~~~~~~~~~-~~~~--~~~~~~~~~~dg~~l~~~~-~~~~~v~~~d~~~----~--~~~~~~~~~~~~----  202 (391)
T 1l0q_A          137 DKTVSVINTVTKAVINT-VSVG--RSPKGIAVTPDGTKVYVAN-FDSMSISVIDTVT----N--SVIDTVKVEAAP----  202 (391)
T ss_dssp             TTEEEEEETTTTEEEEE-EECC--SSEEEEEECTTSSEEEEEE-TTTTEEEEEETTT----T--EEEEEEECSSEE----
T ss_pred             CCEEEEEECCCCcEEEE-EecC--CCcceEEECCCCCEEEEEe-CCCCEEEEEECCC----C--eEEEEEecCCCc----
Confidence            67899999998876544 2221  111222222 454 44544 3444578888754    3  333333321110    


Q ss_pred             CCCCCCceEEEecCCEEEEEEc--CCccEEEEEccccCC
Q 046684          297 GKASWGGTRCAAGNGAICLYRE--VGLGMIIWREDEDKR  333 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~yd~~~~~~  333 (373)
                           ....+...+..|++.+.  ..+.+.+||++  ++
T Consensus       203 -----~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~--~~  234 (391)
T 1l0q_A          203 -----SGIAVNPEGTKAYVTNVDKYFNTVSMIDTG--TN  234 (391)
T ss_dssp             -----EEEEECTTSSEEEEEEECSSCCEEEEEETT--TT
T ss_pred             -----cceEECCCCCEEEEEecCcCCCcEEEEECC--CC
Confidence                 01222223456666654  56789999999  77

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.77  E-value=9e-06  Score=72.03  Aligned_cols=43  Identities=30%  Similarity=0.519  Sum_probs=39.4

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      |++||+|++.+||++|+.+++.+++.|||+|+.+..++..++.
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~   51 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence            7899999999999999999999999999999999987765543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.71  E-value=0.0036  Score=56.87  Aligned_cols=220  Identities=8%  Similarity=-0.027  Sum_probs=110.6

Q ss_pred             eEEEEeCCCCCccccCCCCCCCCcee-EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCC---CCCCCCeEEEEEc
Q 046684           64 CCYVHNPVSDKWHVLSLDFLPYPVRP-VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN---VSRTNPAVGIVME  139 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~~~~~~~~~~~-~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~---~~~~~~~~~~~~~  139 (373)
                      .++.+|+.+..+..+..........+ ..+.++.+++.++.  ...+.+||+.+++.....+..   ........... .
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~-~  178 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLE--DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISI-P  178 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTT--SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEE-G
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCC--CCeEEEEECCCCeEeeecCcccccccCCceeEEEE-c
Confidence            55666665554433321111111112 22337888887764  356999999998876543321   11111111112 1


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EEEEEEcC
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITSA  217 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~  217 (373)
                      +        ++++++.++.+          ..+.+||..+++-...-...        .......++. +| .+|+. +.
T Consensus       179 ~--------~~~~~~s~~~d----------~~v~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~-~~  231 (433)
T 3bws_A          179 E--------HNELWVSQMQA----------NAVHVFDLKTLAYKATVDLT--------GKWSKILLYDPIRDLVYCS-NW  231 (433)
T ss_dssp             G--------GTEEEEEEGGG----------TEEEEEETTTCCEEEEEECS--------SSSEEEEEEETTTTEEEEE-ET
T ss_pred             C--------CCEEEEEECCC----------CEEEEEECCCceEEEEEcCC--------CCCeeEEEEcCCCCEEEEE-ec
Confidence            1        16777777543          46899998876532211110        0011122222 33 46665 44


Q ss_pred             CceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeec-------CCceEEEEeecCCCCCCeEEEEeechh
Q 046684          218 RAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTC-------GGDACVWELSEGGDDDIWCLIEKVPIE  289 (373)
Q Consensus       218 ~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~-------~~~~~i~~~~~~~~~~~W~~v~~~p~~  289 (373)
                      ....|..||+.+++.... .+..  ..-..++. -+|+.+++++..       +..+.+|++..    .+  .+..+...
T Consensus       232 ~~~~i~~~d~~~~~~~~~-~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~----~~--~~~~~~~~  302 (433)
T 3bws_A          232 ISEDISVIDRKTKLEIRK-TDKI--GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK----EK--LIDTIGPP  302 (433)
T ss_dssp             TTTEEEEEETTTTEEEEE-CCCC--SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT----TE--EEEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEE-ecCC--CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC----Cc--EEeeccCC
Confidence            567899999988766443 2221  11122222 255444444432       22367888754    32  22222111


Q ss_pred             hhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          290 MGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ...         ....+...++.+|+.+...+.+.+||++  ++
T Consensus       303 ~~~---------~~~~~~~~g~~l~~~~~~~~~v~v~d~~--~~  335 (433)
T 3bws_A          303 GNK---------RHIVSGNTENKIYVSDMCCSKIEVYDLK--EK  335 (433)
T ss_dssp             ECE---------EEEEECSSTTEEEEEETTTTEEEEEETT--TT
T ss_pred             CCc---------ceEEECCCCCEEEEEecCCCEEEEEECC--CC
Confidence            100         0122223355788888888899999999  77

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.66  E-value=0.011  Score=49.68  Aligned_cols=199  Identities=6%  Similarity=-0.173  Sum_probs=106.8

Q ss_pred             eEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684           89 PVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY  168 (373)
Q Consensus        89 ~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~  168 (373)
                      .+...++.+|...|..+.+.+.++|+.|++-..--+++......+++..+           .+||++...+         
T Consensus        47 GL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-----------~~ly~ltw~~---------  106 (262)
T 3nol_A           47 GFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-----------DKIVGLTWKN---------  106 (262)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-----------TEEEEEESSS---------
T ss_pred             eEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-----------CEEEEEEeeC---------
Confidence            45556899999988766779999999999865432333322222344443           8999986443         


Q ss_pred             cceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEE-ecccCC-CCCCCc-
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWR-ELSAPM-ADRLEF-  245 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~-~~~~~~-p~~~~~-  245 (373)
                       ..+.+||.++.+=..--+.+      .   .+...+.-++.+|+..  ....+..+|+++.+-. .+.... +.+... 
T Consensus       107 -~~v~v~D~~t~~~~~ti~~~------~---eG~glt~dg~~L~~Sd--Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l  174 (262)
T 3nol_A          107 -GLGFVWNIRNLRQVRSFNYD------G---EGWGLTHNDQYLIMSD--GTPVLRFLDPESLTPVRTITVTAHGEELPEL  174 (262)
T ss_dssp             -SEEEEEETTTCCEEEEEECS------S---CCCCEEECSSCEEECC--SSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred             -CEEEEEECccCcEEEEEECC------C---CceEEecCCCEEEEEC--CCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence             57999999886632221111      1   2233333345566653  3678999999986543 331111 111111 


Q ss_pred             eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcC--CCCCCCceEEE--ecCCEEEEEEcCCc
Q 046684          246 ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSG--GKASWGGTRCA--AGNGAICLYREVGL  321 (373)
Q Consensus       246 ~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~--~~~~~~~~~~~--~~~~~i~~~~~~~~  321 (373)
                      ..+...+|+||+-. ....  .|...+.  ++.  +.+..++...+.....  .......-.++  ..++.+|+.|..-+
T Consensus       175 NELe~~~G~lyan~-w~~~--~I~vIDp--~tG--~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp  247 (262)
T 3nol_A          175 NELEWVDGEIFANV-WQTN--KIVRIDP--ETG--KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP  247 (262)
T ss_dssp             EEEEEETTEEEEEE-TTSS--EEEEECT--TTC--BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             ceeEEECCEEEEEE-ccCC--eEEEEEC--CCC--cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            12445599999654 2222  4555655  334  3444443322111000  00000122233  34689999887765


Q ss_pred             cEEEE
Q 046684          322 GMIIW  326 (373)
Q Consensus       322 ~~~~y  326 (373)
                      +++.-
T Consensus       248 ~~~ev  252 (262)
T 3nol_A          248 KVFEI  252 (262)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            55443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.65  E-value=0.0053  Score=51.56  Aligned_cols=179  Identities=9%  Similarity=-0.025  Sum_probs=104.9

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES  229 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~  229 (373)
                      ..+|+..|..          ..+.++|+++++=.... ++..       ......+..++++|.+ ....+.+.+||+++
T Consensus        65 ~~Ly~stG~~----------g~v~~iD~~Tgkv~~~~-l~~~-------~FgeGit~~g~~Ly~l-tw~~~~v~V~D~~T  125 (268)
T 3nok_A           65 GHFFESTGHQ----------GTLRQLSLESAQPVWME-RLGN-------IFAEGLASDGERLYQL-TWTEGLLFTWSGMP  125 (268)
T ss_dssp             TEEEEEETTT----------TEEEECCSSCSSCSEEE-ECTT-------CCEEEEEECSSCEEEE-ESSSCEEEEEETTT
T ss_pred             CEEEEEcCCC----------CEEEEEECCCCcEEeEE-CCCC-------cceeEEEEeCCEEEEE-EccCCEEEEEECCc
Confidence            7899988765          23899999988743322 4311       1122346678899999 45688999999988


Q ss_pred             CcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec
Q 046684          230 NTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG  309 (373)
Q Consensus       230 ~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~  309 (373)
                      .+-..- .+.+  ..+.+++.-+++||+..|.  .  .++.++.    .+-+.+..++...-.....     ..-.....
T Consensus       126 l~~~~t-i~~~--~eGwGLt~Dg~~L~vSdGs--~--~l~~iDp----~T~~v~~~I~V~~~g~~v~-----~lNeLe~~  189 (268)
T 3nok_A          126 PQRERT-TRYS--GEGWGLCYWNGKLVRSDGG--T--MLTFHEP----DGFALVGAVQVKLRGQPVE-----LINELECA  189 (268)
T ss_dssp             TEEEEE-EECS--SCCCCEEEETTEEEEECSS--S--EEEEECT----TTCCEEEEEECEETTEECC-----CEEEEEEE
T ss_pred             CcEEEE-EeCC--CceeEEecCCCEEEEECCC--C--EEEEEcC----CCCeEEEEEEeCCCCcccc-----cccccEEe
Confidence            655432 2332  3456677778888888642  2  5666655    4445555554432110000     00112233


Q ss_pred             CCEEEEEEcCCccEEEEEccccCCcc-cEEEecccc--cC--CCCcccccceeEEEecccccc
Q 046684          310 NGAICLYREVGLGMIIWREDEDKRKW-EWVWVGGCC--LT--GGKQVQNVPMRGVLLHPSLAC  367 (373)
Q Consensus       310 ~~~i~~~~~~~~~~~~yd~~~~~~~~-~W~~~~~~~--~~--~~~~~~~~~~~~~~~~p~l~~  367 (373)
                      ++.||+-...++.|.+-|++  ++++ .|..+.++.  ..  ....  ...+.|+.|.|.=+.
T Consensus       190 dG~lyanvw~s~~I~vIDp~--TG~V~~~Idl~~L~~~~~~~~~~~--~~vlNGIA~dp~~~r  248 (268)
T 3nok_A          190 NGVIYANIWHSSDVLEIDPA--TGTVVGVIDASALTRAVAGQVTNP--EAVLNGIAVEPGSGR  248 (268)
T ss_dssp             TTEEEEEETTCSEEEEECTT--TCBEEEEEECHHHHHHHTTTCCCT--TCCEEEEEECTTTCC
T ss_pred             CCEEEEEECCCCeEEEEeCC--CCcEEEEEECCCCcccccccccCc--CCceEEEEEcCCCCE
Confidence            78999877677889999999  8843 243333221  00  1111  235788999886443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.61  E-value=0.0028  Score=56.77  Aligned_cols=215  Identities=9%  Similarity=0.095  Sum_probs=111.4

Q ss_pred             eeEEEEeCCCCCcccc-CCCCCCCCceeEE--eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEc
Q 046684           63 LCCYVHNPVSDKWHVL-SLDFLPYPVRPVS--SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVME  139 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~--~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~  139 (373)
                      ..+..+|..+.+.... ....   ....++  ..+..+++.+..  ...+.+||+.+++....-...  .. . ..+...
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~~--~~~v~v~d~~~~~~~~~~~~~--~~-~-~~~~~s  124 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGS---SPQGVAVSPDGKQVYVTNMA--SSTLSVIDTTSNTVAGTVKTG--KS-P-LGLALS  124 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEECS--SS-E-EEEEEC
T ss_pred             CeEEEEECCCCeEEEEEECCC---CccceEECCCCCEEEEEECC--CCEEEEEECCCCeEEEEEeCC--CC-c-ceEEEC
Confidence            4667788877654332 2111   222222  225557666643  467999999998764432211  11 1 122221


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EEEEEEcC
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITSA  217 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~  217 (373)
                      +.+       ..+|+.++.+          ..+.+||..+++.........         ....+++. +| .+|+. +.
T Consensus       125 ~dg-------~~l~~~~~~~----------~~v~~~d~~~~~~~~~~~~~~---------~~~~~~~~~dg~~l~~~-~~  177 (391)
T 1l0q_A          125 PDG-------KKLYVTNNGD----------KTVSVINTVTKAVINTVSVGR---------SPKGIAVTPDGTKVYVA-NF  177 (391)
T ss_dssp             TTS-------SEEEEEETTT----------TEEEEEETTTTEEEEEEECCS---------SEEEEEECTTSSEEEEE-ET
T ss_pred             CCC-------CEEEEEeCCC----------CEEEEEECCCCcEEEEEecCC---------CcceEEECCCCCEEEEE-eC
Confidence            111       4576766443          478999998876543322210         01111222 34 46555 44


Q ss_pred             CceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEee--cCCceEEEEeecCCCCCCeEEEEeechhhhhhh
Q 046684          218 RAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGT--CGGDACVWELSEGGDDDIWCLIEKVPIEMGMRL  294 (373)
Q Consensus       218 ~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~--~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~  294 (373)
                      ....+..+|+.+++.... .+...  ....++. -+|+.+++++.  ....+.+|+++.    .  +.+..++.....  
T Consensus       178 ~~~~v~~~d~~~~~~~~~-~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~----~--~~~~~~~~~~~~--  246 (391)
T 1l0q_A          178 DSMSISVIDTVTNSVIDT-VKVEA--APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT----N--KITARIPVGPDP--  246 (391)
T ss_dssp             TTTEEEEEETTTTEEEEE-EECSS--EEEEEEECTTSSEEEEEEECSSCCEEEEEETTT----T--EEEEEEECCSSE--
T ss_pred             CCCEEEEEECCCCeEEEE-EecCC--CccceEECCCCCEEEEEecCcCCCcEEEEECCC----C--eEEEEEecCCCc--
Confidence            567899999998865544 22211  1112222 24554444443  334478888754    3  344444332110  


Q ss_pred             cCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          295 SGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                             ....+...+..||+.+...+.+.+||++  ++
T Consensus       247 -------~~~~~s~dg~~l~~s~~~d~~v~v~d~~--~~  276 (391)
T 1l0q_A          247 -------AGIAVTPDGKKVYVALSFXNTVSVIDTA--TN  276 (391)
T ss_dssp             -------EEEEECTTSSEEEEEETTTTEEEEEETT--TT
T ss_pred             -------cEEEEccCCCEEEEEcCCCCEEEEEECC--CC
Confidence                   0122222355788887777889999999  87

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.58  E-value=0.0085  Score=52.21  Aligned_cols=153  Identities=9%  Similarity=0.077  Sum_probs=79.7

Q ss_pred             ceEEEEECCC-Cceeeec--CCCccccccceeccCCceEEE--CCE-EEEEEcCCceEEEEEECC--CCcEEecc--cCC
Q 046684          170 SMVEMYDSRH-DAWQIIG--SMPVEFAVRLTVWTPNESVCT--RGM-LYWITSARAYSVIGFDIE--SNTWRELS--APM  239 (373)
Q Consensus       170 ~~~~~yd~~~-~~W~~~~--~~p~~~~~~~~~~~~~~~~~~--~g~-ly~~gg~~~~~i~~yd~~--~~~w~~~~--~~~  239 (373)
                      ..+.+||..+ ++.....  ....     ... .....+.+  +|. +|+. +.....+..||+.  ++++....  ...
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~pdg~~l~~~-~~~~~~i~~~~~~~~~g~~~~~~~~~~~  223 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTT-----VEG-AGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIECVQTLDMM  223 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEEC-----STT-CCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             CEEEEEEecCCCceeeeccccccc-----CCC-CCcceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCcEEEEeecccc
Confidence            3588999877 6665432  1100     000 01111222  454 6666 3456778899985  34443220  112


Q ss_pred             CCC---CCce-eEEEE-CCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEE
Q 046684          240 ADR---LEFA-TLVSR-NQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAI  313 (373)
Q Consensus       240 p~~---~~~~-~~~~~-~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (373)
                      +..   .... .++.. +|+ ||+. ......+.+|+++.  ++.+++.+..++.....         ....+...+..|
T Consensus       224 ~~~~~~~~~~~~i~~s~dg~~l~v~-~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~---------~~~~~s~dg~~l  291 (343)
T 1ri6_A          224 PENFSDTRWAADIHITPDGRHLYAC-DRTASLITVFSVSE--DGSVLSKEGFQPTETQP---------RGFNVDHSGKYL  291 (343)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECT--TSCCEEEEEEEECSSSC---------CCEEECTTSSEE
T ss_pred             CccccccCCccceEECCCCCEEEEE-ecCCCEEEEEEEcC--CCCceEEeeeecCCCcc---------ceEEECCCCCEE
Confidence            221   1111 23222 454 5444 33445589999975  45678887766543211         123333345667


Q ss_pred             EEEEcCCccEEEE--EccccCCcccEEEeccccc
Q 046684          314 CLYREVGLGMIIW--REDEDKRKWEWVWVGGCCL  345 (373)
Q Consensus       314 ~~~~~~~~~~~~y--d~~~~~~~~~W~~~~~~~~  345 (373)
                      |+.+...+.+.+|  |++  ++  +++.+...+.
T Consensus       292 ~~~~~~~~~v~v~~~d~~--~g--~~~~~~~~~~  321 (343)
T 1ri6_A          292 IAAGQKSHHISVYEIVGE--QG--LLHEKGRYAV  321 (343)
T ss_dssp             EEECTTTCEEEEEEEETT--TT--EEEEEEEEEC
T ss_pred             EEecCCCCeEEEEEEcCC--Cc--eeeEcccccc
Confidence            7776566677787  666  78  7887766554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.58  E-value=0.0017  Score=53.93  Aligned_cols=109  Identities=14%  Similarity=0.017  Sum_probs=82.3

Q ss_pred             ceEEECCEEEEEEcCC-ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeE
Q 046684          203 ESVCTRGMLYWITSAR-AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWC  281 (373)
Q Consensus       203 ~~~~~~g~ly~~gg~~-~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~  281 (373)
                      ...+.++.||.-+|.. ...|..+|+++++-... .+++....+.+++..+++||++....+   .+|.++.    ++-+
T Consensus        25 GL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l~~~~fgeGi~~~~~~ly~ltw~~~---~v~v~D~----~tl~   96 (243)
T 3mbr_X           25 GLFYLRGHLYESTGETGRSSVRKVDLETGRILQR-AEVPPPYFGAGIVAWRDRLIQLTWRNH---EGFVYDL----ATLT   96 (243)
T ss_dssp             EEEEETTEEEEEECCTTSCEEEEEETTTCCEEEE-EECCTTCCEEEEEEETTEEEEEESSSS---EEEEEET----TTTE
T ss_pred             cEEEECCEEEEECCCCCCceEEEEECCCCCEEEE-EeCCCCcceeEEEEeCCEEEEEEeeCC---EEEEEEC----CcCc
Confidence            3456678899887654 57899999999987765 566666666788888999999964332   4566654    6678


Q ss_pred             EEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       282 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+.+++.+..           +..++..++.+|+.++ ++.+..+|++  +.
T Consensus        97 ~~~ti~~~~~-----------Gwglt~dg~~L~vSdg-s~~l~~iDp~--t~  134 (243)
T 3mbr_X           97 PRARFRYPGE-----------GWALTSDDSHLYMSDG-TAVIRKLDPD--TL  134 (243)
T ss_dssp             EEEEEECSSC-----------CCEEEECSSCEEEECS-SSEEEEECTT--TC
T ss_pred             EEEEEeCCCC-----------ceEEeeCCCEEEEECC-CCeEEEEeCC--CC
Confidence            8888876531           5777888889999876 7789999999  86

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.46  E-value=0.019  Score=48.17  Aligned_cols=215  Identities=11%  Similarity=0.018  Sum_probs=107.1

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPA  142 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~  142 (373)
                      ..+..+|+.+.....................+|.+|+...   ...+.++|+.++....++...  ...+. .+..++  
T Consensus        46 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~---~~~i~~~d~~~~~~~~~~~~~--~~~p~-~i~~~~--  117 (270)
T 1rwi_B           46 GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF---NNRVVTLAAGSNNQTVLPFDG--LNYPE-GLAVDT--  117 (270)
T ss_dssp             CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET---TTEEEEECTTCSCCEECCCCS--CSSEE-EEEECT--
T ss_pred             CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC---CCEEEEEeCCCceEeeeecCC--cCCCc-ceEECC--
Confidence            4666788766544333222212222222334677888765   467999999887655443211  11112 222221  


Q ss_pred             CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceE
Q 046684          143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYS  221 (373)
Q Consensus       143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~  221 (373)
                       +     +++|+.....          ..+.+|+..+..........        .......++- +|.+|+.. .....
T Consensus       118 -~-----g~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~--------~~~p~~i~~~~~g~l~v~~-~~~~~  172 (270)
T 1rwi_B          118 -Q-----GAVYVADRGN----------NRVVKLAAGSKTQTVLPFTG--------LNDPDGVAVDNSGNVYVTD-TDNNR  172 (270)
T ss_dssp             -T-----CCEEEEEGGG----------TEEEEECTTCCSCEECCCCS--------CCSCCCEEECTTCCEEEEE-GGGTE
T ss_pred             -C-----CCEEEEECCC----------CEEEEEECCCceeEeecccc--------CCCceeEEEeCCCCEEEEE-CCCCE
Confidence             1     6688865322          35778876655443221110        0111222332 57888874 33568


Q ss_pred             EEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCC
Q 046684          222 VIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKAS  300 (373)
Q Consensus       222 i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~  300 (373)
                      |..||+.++.-... ..... ..-.+++.- +|.||+.... ...+.+|+++.    ..-..   .+....         
T Consensus       173 i~~~~~~~~~~~~~-~~~~~-~~p~~i~~d~~g~l~v~~~~-~~~v~~~~~~~----~~~~~---~~~~~~---------  233 (270)
T 1rwi_B          173 VVKLEAESNNQVVL-PFTDI-TAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGS----TTSTV---LPFTGL---------  233 (270)
T ss_dssp             EEEECTTTCCEEEC-CCSSC-CSEEEEEECTTCCEEEEETT-TSCEEEECTTC----SCCEE---CCCCSC---------
T ss_pred             EEEEecCCCceEee-cccCC-CCceEEEECCCCCEEEEECC-CCcEEEEcCCC----Cccee---eccCCC---------
Confidence            99999987765443 11111 112233333 5688887632 23355665532    22111   111100         


Q ss_pred             CCceEEEe-cCCEEEEEEcCCccEEEEEcc
Q 046684          301 WGGTRCAA-GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       301 ~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ..+..++. .++.||+.+...+.|.+|++.
T Consensus       234 ~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          234 NTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            01234443 356899998888889999988

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.42  E-value=0.027  Score=49.25  Aligned_cols=205  Identities=8%  Similarity=0.020  Sum_probs=99.3

Q ss_pred             eCcEEEEeeCCC----CceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684           93 IGSFLLLRPINS----TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY  168 (373)
Q Consensus        93 ~~g~l~~~gg~~----~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~  168 (373)
                      .++.+|+.....    ....++++|+.+++....-+...  ....+++..++         .++|+.+..+         
T Consensus        51 dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg---------~~l~v~~~~~---------  110 (353)
T 3vgz_A           51 QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--KPFGATINNTT---------QTLWFGNTVN---------  110 (353)
T ss_dssp             TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--CCCSEEEETTT---------TEEEEEETTT---------
T ss_pred             CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--CcceEEECCCC---------CEEEEEecCC---------
Confidence            345777766421    14679999999887543222111  11233332221         4577766432         


Q ss_pred             cceEEEEECCCCceeeecCCCcccccc-ceeccCCceEEE-C-CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVR-LTVWTPNESVCT-R-GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF  245 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~-~~~~~~~~~~~~-~-g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~  245 (373)
                       ..+.+||..+++-...-..+...... .........++. + +.+|+........|..+|+++.+-... .+.......
T Consensus       111 -~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~  188 (353)
T 3vgz_A          111 -SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA-IQNTGKMST  188 (353)
T ss_dssp             -TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE-ECCCCTTCC
T ss_pred             -CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE-ecCCCCccc
Confidence             37899999887632221111000000 000001112332 3 457776534467899999988765443 231111111


Q ss_pred             eeEEEECCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEE
Q 046684          246 ATLVSRNQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMI  324 (373)
Q Consensus       246 ~~~~~~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  324 (373)
                      .....-+|+ ||+...  ...+.+|++..    .  +.+..++......  ..  ......+...++.+|+.+...+.+.
T Consensus       189 ~~~~s~dg~~l~~~~~--~~~i~~~d~~~----~--~~~~~~~~~~~~~--~~--~~~~~~~s~dg~~l~~~~~~~~~v~  256 (353)
T 3vgz_A          189 GLALDSEGKRLYTTNA--DGELITIDTAD----N--KILSRKKLLDDGK--EH--FFINISLDTARQRAFITDSKAAEVL  256 (353)
T ss_dssp             CCEEETTTTEEEEECT--TSEEEEEETTT----T--EEEEEEECCCSSS--CC--CEEEEEEETTTTEEEEEESSSSEEE
T ss_pred             eEEECCCCCEEEEEcC--CCeEEEEECCC----C--eEEEEEEcCCCCC--Cc--ccceEEECCCCCEEEEEeCCCCEEE
Confidence            112223444 555432  33456666543    2  3333332211000  00  0001233334677888877778899


Q ss_pred             EEEccccCC
Q 046684          325 IWREDEDKR  333 (373)
Q Consensus       325 ~yd~~~~~~  333 (373)
                      +||++  ++
T Consensus       257 ~~d~~--~~  263 (353)
T 3vgz_A          257 VVDTR--NG  263 (353)
T ss_dssp             EEETT--TC
T ss_pred             EEECC--CC
Confidence            99999  77

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.42  E-value=0.057  Score=47.58  Aligned_cols=248  Identities=15%  Similarity=0.102  Sum_probs=113.5

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEee-CcEEEEeeCCC-CceEE--EEEcCcccceeccCCCCCCCCCCeEEEEE
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSI-GSFLLLRPINS-TILQL--VLCNPFTRQFRYLPLLNVSRTNPAVGIVM  138 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~-~g~l~~~gg~~-~~~~~--~v~np~t~~w~~lp~~~~~~~~~~~~~~~  138 (373)
                      ..++.+|+.+.+...+.............+- +..||+.+... ....+  +.+|+.+++.+.+...+.....+..... 
T Consensus        29 i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-  107 (361)
T 3scy_A           29 IYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-  107 (361)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-
T ss_pred             EEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-
Confidence            4555568877777665322222222223334 44577766531 12344  5556766777666544322222222222 


Q ss_pred             cCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc-eeeecC-------CCccccccceeccCCceEE-ECC
Q 046684          139 EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA-WQIIGS-------MPVEFAVRLTVWTPNESVC-TRG  209 (373)
Q Consensus       139 ~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~-------~p~~~~~~~~~~~~~~~~~-~~g  209 (373)
                      ++         ..+|+....+          ..+.+|+..++. -..+..       -|.+..  ......+.+++ -+|
T Consensus       108 dg---------~~l~~~~~~~----------~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~spdg  166 (361)
T 3scy_A          108 NG---------KNIVTANYSG----------GSITVFPIGQDGALLPASDVIEFKGSGPDKER--QTMPHLHCVRITPDG  166 (361)
T ss_dssp             CS---------SEEEEEETTT----------TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTT--CSSCCEEEEEECTTS
T ss_pred             CC---------CEEEEEECCC----------CEEEEEEeCCCCcCcccceeEEccCCCCCccc--cCCCcceEEEECCCC
Confidence            21         5566654222          457888876432 211110       000000  00000011222 256


Q ss_pred             E-EEEEEcCCceEEEEEECCCCc-------EEec----ccCCCCCCCceeEEE-ECCE-EEEEEeecCCceEEEEeecCC
Q 046684          210 M-LYWITSARAYSVIGFDIESNT-------WREL----SAPMADRLEFATLVS-RNQK-LTLIGGTCGGDACVWELSEGG  275 (373)
Q Consensus       210 ~-ly~~gg~~~~~i~~yd~~~~~-------w~~~----~~~~p~~~~~~~~~~-~~g~-l~~~gg~~~~~~~i~~~~~~~  275 (373)
                      + +|+. ......+..|+...+.       ....    ....+....-..++. -+|+ ||+.. .....+.+|+++.  
T Consensus       167 ~~l~~~-~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~~~--  242 (361)
T 3scy_A          167 KYLLAD-DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN-EIGGTVIAFRYAD--  242 (361)
T ss_dssp             SEEEEE-ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTTCEEEEEEEET--
T ss_pred             CEEEEE-eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc-CCCCeEEEEEecC--
Confidence            5 6666 3445677778776543       2110    011122111122332 3565 55543 3344588999875  


Q ss_pred             CCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC-CccEEEEEccccCCcccEEEeccccc
Q 046684          276 DDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV-GLGMIIWREDEDKRKWEWVWVGGCCL  345 (373)
Q Consensus       276 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~yd~~~~~~~~~W~~~~~~~~  345 (373)
                        .+.+.+..++......     .......+...+..||+.+.. .+.+.+|+.+.+++  +++.+...+.
T Consensus       243 --g~~~~~~~~~~~~~~~-----~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g--~~~~~~~~~~  304 (361)
T 3scy_A          243 --GMLDEIQTVAADTVNA-----QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG--TLTKVGYQLT  304 (361)
T ss_dssp             --TEEEEEEEEESCSSCC-----CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC--CEEEEEEEEC
T ss_pred             --CceEEeEEEecCCCCC-----CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC--cEEEeeEecC
Confidence              6666665543211100     000012222235567777766 56788888742266  6666554443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.38  E-value=0.0092  Score=50.45  Aligned_cols=151  Identities=11%  Similarity=-0.039  Sum_probs=89.6

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES  229 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~  229 (373)
                      +++|+..|..        ....+.++|..+++=...-.++.       .......+..++.+|+.. ...+.+.+||+++
T Consensus        32 g~Lyvstg~~--------~~s~v~~iD~~tg~v~~~i~l~~-------~~fgeGi~~~g~~lyv~t-~~~~~v~viD~~t   95 (266)
T 2iwa_A           32 DTLFESTGLY--------GRSSVRQVALQTGKVENIHKMDD-------SYFGEGLTLLNEKLYQVV-WLKNIGFIYDRRT   95 (266)
T ss_dssp             TEEEEEECST--------TTCEEEEEETTTCCEEEEEECCT-------TCCEEEEEEETTEEEEEE-TTCSEEEEEETTT
T ss_pred             CeEEEECCCC--------CCCEEEEEECCCCCEEEEEecCC-------CcceEEEEEeCCEEEEEE-ecCCEEEEEECCC
Confidence            6799976532        13679999999987443322321       011123456678999994 5678899999987


Q ss_pred             CcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec
Q 046684          230 NTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG  309 (373)
Q Consensus       230 ~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~  309 (373)
                      .+-... .+.+ ...+.+++.-+++||+..+   .. .++.++.    .+-+.+..++.....+...     ....+...
T Consensus        96 ~~v~~~-i~~g-~~~g~glt~Dg~~l~vs~g---s~-~l~viD~----~t~~v~~~I~Vg~~~~p~~-----~~nele~~  160 (266)
T 2iwa_A           96 LSNIKN-FTHQ-MKDGWGLATDGKILYGSDG---TS-ILYEIDP----HTFKLIKKHNVKYNGHRVI-----RLNELEYI  160 (266)
T ss_dssp             TEEEEE-EECC-SSSCCEEEECSSSEEEECS---SS-EEEEECT----TTCCEEEEEECEETTEECC-----CEEEEEEE
T ss_pred             CcEEEE-EECC-CCCeEEEEECCCEEEEECC---CC-eEEEEEC----CCCcEEEEEEECCCCcccc-----cceeEEEE
Confidence            654322 2333 1234455554667887653   22 5666655    4455555555432110000     01222233


Q ss_pred             CCEEEEEEcCCccEEEEEccccCC
Q 046684          310 NGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       310 ~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ++.||+....++.+.+-|++  ++
T Consensus       161 dg~lyvn~~~~~~V~vID~~--tg  182 (266)
T 2iwa_A          161 NGEVWANIWQTDCIARISAK--DG  182 (266)
T ss_dssp             TTEEEEEETTSSEEEEEETT--TC
T ss_pred             CCEEEEecCCCCeEEEEECC--CC
Confidence            78999887777889999999  77

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.37  E-value=0.05  Score=46.19  Aligned_cols=214  Identities=7%  Similarity=-0.044  Sum_probs=107.0

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEe-eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSS-IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~-~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..+..+|+. .+...+..+........++. .+|.+|+....  ...+.++|+ +++........ .... ...+..++ 
T Consensus        78 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~~-~~~~-~~~i~~~~-  150 (299)
T 2z2n_A           78 NKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELPN-KGSY-PSFITLGS-  150 (299)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECSS-TTCC-EEEEEECT-
T ss_pred             CeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecC--CceEEEECC-CCCEEEecCCC-CCCC-CceEEEcC-
Confidence            456678875 34433332211112223333 36788886542  457899999 66665432211 1111 12222221 


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~  219 (373)
                        +     +++|+....          ...+.+||. +++.+... .+..       ........+  +|.+|+.. ...
T Consensus       151 --~-----g~l~v~~~~----------~~~i~~~~~-~g~~~~~~-~~~~-------~~~~~~i~~~~~g~l~v~~-~~~  203 (299)
T 2z2n_A          151 --D-----NALWFTENQ----------NNAIGRITE-SGDITEFK-IPTP-------ASGPVGITKGNDDALWFVE-IIG  203 (299)
T ss_dssp             --T-----SCEEEEETT----------TTEEEEECT-TCCEEEEE-CSST-------TCCEEEEEECTTSSEEEEE-TTT
T ss_pred             --C-----CCEEEEeCC----------CCEEEEEcC-CCcEEEee-CCCC-------CCcceeEEECCCCCEEEEc-cCC
Confidence              1     678876422          246888998 77766542 1110       011112223  47888773 345


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCc-eeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEF-ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ..+..||+ +++...+.  .+..... ..++. -+|.||+... ....+.+|++ .    .+.... .++....      
T Consensus       204 ~~i~~~~~-~g~~~~~~--~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~-~----g~~~~~-~~~~~~~------  267 (299)
T 2z2n_A          204 NKIGRITT-SGEITEFK--IPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTS-N----NIIEEY-PIQIKSA------  267 (299)
T ss_dssp             TEEEEECT-TCCEEEEE--CSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEET-T----TEEEEE-ECSSSSC------
T ss_pred             ceEEEECC-CCcEEEEE--CCCCCCCceeEEECCCCCEEEecc-CCceEEEECC-C----CceEEE-eCCCCCC------
Confidence            78999999 77776552  2222222 23333 2678887652 2233455554 2    322222 1221110      


Q ss_pred             CCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          298 KASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                          .+..++..++.||+... .+.+..||++  ++
T Consensus       268 ----~~~~i~~~~g~l~v~~~-~~~l~~~~~~--~~  296 (299)
T 2z2n_A          268 ----EPHGICFDGETIWFAME-CDKIGKLTLI--KD  296 (299)
T ss_dssp             ----CEEEEEECSSCEEEEET-TTEEEEEEEC----
T ss_pred             ----ccceEEecCCCEEEEec-CCcEEEEEcC--cc
Confidence                12333337788888764 4679999998  66

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.35  E-value=0.039  Score=46.87  Aligned_cols=215  Identities=10%  Similarity=-0.037  Sum_probs=109.4

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE-eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS-SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..+..+|+. ........+........++ ..+|.+++....  ...+.++|+. ++.+.+.. +.....+ ..+..++ 
T Consensus        36 ~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~-g~~~~~~~-~~~~~~~-~~i~~~~-  108 (299)
T 2z2n_A           36 NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA--ANKIGRITKK-GIIKEYTL-PNPDSAP-YGITEGP-  108 (299)
T ss_dssp             TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT--TTEEEEECTT-SCEEEEEC-SSTTCCE-EEEEECT-
T ss_pred             CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC--CCeEEEECCC-CcEEEEeC-CCcCCCc-eeeEECC-
Confidence            467778888 6665543221122222333 347778887542  3578999986 45544331 1111111 2222221 


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCce
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAY  220 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~  220 (373)
                        +     +++|+.....          ..+.+||. +++...... +..      .......+.- +|.+|+.. ....
T Consensus       109 --~-----g~l~v~~~~~----------~~i~~~d~-~g~~~~~~~-~~~------~~~~~~i~~~~~g~l~v~~-~~~~  162 (299)
T 2z2n_A          109 --N-----GDIWFTEMNG----------NRIGRITD-DGKIREYEL-PNK------GSYPSFITLGSDNALWFTE-NQNN  162 (299)
T ss_dssp             --T-----SCEEEEETTT----------TEEEEECT-TCCEEEEEC-SST------TCCEEEEEECTTSCEEEEE-TTTT
T ss_pred             --C-----CCEEEEecCC----------ceEEEECC-CCCEEEecC-CCC------CCCCceEEEcCCCCEEEEe-CCCC
Confidence              1     6788765322          35788888 665554321 100      0011122222 57888863 3456


Q ss_pred             EEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCC
Q 046684          221 SVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKA  299 (373)
Q Consensus       221 ~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~  299 (373)
                      .+..||+ +++...+..+... ..-..++.. +|.||+... ....+.+|++ .    .+.... .++...         
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~----g~~~~~-~~~~~~---------  224 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPA-SGPVGITKGNDDALWFVEI-IGNKIGRITT-S----GEITEF-KIPTPN---------  224 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTT-CCEEEEEECTTSSEEEEET-TTTEEEEECT-T----CCEEEE-ECSSTT---------
T ss_pred             EEEEEcC-CCcEEEeeCCCCC-CcceeEEECCCCCEEEEcc-CCceEEEECC-C----CcEEEE-ECCCCC---------
Confidence            8999999 7777654222111 111233332 578887653 2233555555 3    444432 222111         


Q ss_pred             CCCceEEEe-cCCEEEEEEcCCccEEEEEcc
Q 046684          300 SWGGTRCAA-GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       300 ~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~  329 (373)
                       ..+..++. .++.||+.....+.+..||++
T Consensus       225 -~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          225 -ARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             -CCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             -CCceeEEECCCCCEEEeccCCceEEEECCC
Confidence             01233433 367888877566689999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.34  E-value=0.029  Score=49.20  Aligned_cols=195  Identities=9%  Similarity=0.046  Sum_probs=97.7

Q ss_pred             eEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeec
Q 046684          107 LQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIG  186 (373)
Q Consensus       107 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~  186 (373)
                      -.++.+|+.+++.+.+....... .+....+.         +++++|+.+...        ....+.+||..+++++.+.
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~-~p~~~a~s---------pdg~l~~~~~~~--------~~~~v~~~~~~~g~~~~~~   79 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQ-NPTYLALS---------AKDCLYSVDKED--------DEGGIAAWQIDGQTAHKLN   79 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECS-CCCCEEEC---------TTCEEEEEEEET--------TEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEcCCCCeEEEeeeeeccC-CcceEEEc---------cCCeEEEEEecC--------CCceEEEEEecCCcEEEee
Confidence            35778889888876643322211 11222222         116688775321        1256899999888877665


Q ss_pred             CCCccccccceeccCCceEEE-CCE-EEEEEcCCceEEEEEECC-CCcEEecccCCCC------C---CCcee-EEE-EC
Q 046684          187 SMPVEFAVRLTVWTPNESVCT-RGM-LYWITSARAYSVIGFDIE-SNTWRELSAPMAD------R---LEFAT-LVS-RN  252 (373)
Q Consensus       187 ~~p~~~~~~~~~~~~~~~~~~-~g~-ly~~gg~~~~~i~~yd~~-~~~w~~~~~~~p~------~---~~~~~-~~~-~~  252 (373)
                      ....      .......+++- +|+ +|+. ......+..||+. +++...+ ...+.      .   ..... ++. -+
T Consensus        80 ~~~~------~~~~p~~~a~spdg~~l~~~-~~~~~~v~v~~~~~~g~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~spd  151 (347)
T 3hfq_A           80 TVVA------PGTPPAYVAVDEARQLVYSA-NYHKGTAEVMKIAADGALTLT-DTVQHSGHGPRPEQDGSHIHYTDLTPD  151 (347)
T ss_dssp             EEEE------ESCCCSEEEEETTTTEEEEE-ETTTTEEEEEEECTTSCEEEE-EEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred             eeec------CCCCCEEEEECCCCCEEEEE-eCCCCEEEEEEeCCCCCeeec-ceeecCCCCCCccccCCCceEEEECCC
Confidence            4311      11112222332 454 6665 3445678888885 3344333 11111      0   01122 222 36


Q ss_pred             CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccC
Q 046684          253 QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDK  332 (373)
Q Consensus       253 g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~  332 (373)
                      |++|+.. .....+.+|+++.   +.+...+.........       ......+...|..+|+.+...+.+.+|+.+.++
T Consensus       152 g~l~v~~-~~~~~v~~~~~~~---~g~~~~~~~~~~~~g~-------~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  220 (347)
T 3hfq_A          152 NRLAVID-LGSDKVYVYNVSD---AGQLSEQSVLTMEAGF-------GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT  220 (347)
T ss_dssp             SCEEEEE-TTTTEEEEEEECT---TSCEEEEEEEECCTTC-------CEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CcEEEEe-CCCCEEEEEEECC---CCcEEEeeeEEcCCCC-------CCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            7755543 3444578999873   2555555433221110       000122222345688887777778888877223


Q ss_pred             CcccEEEe
Q 046684          333 RKWEWVWV  340 (373)
Q Consensus       333 ~~~~W~~~  340 (373)
                      +  +++.+
T Consensus       221 g--~~~~~  226 (347)
T 3hfq_A          221 G--AFTQL  226 (347)
T ss_dssp             T--EEEEE
T ss_pred             C--ceEEe
Confidence            6  55444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.33  E-value=0.059  Score=45.78  Aligned_cols=211  Identities=6%  Similarity=-0.004  Sum_probs=106.9

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE-eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS-SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..+..||+. .+...+..+........++ ..+|.+|+....  ...+.++|+. ++...... +.....+ ..+..++ 
T Consensus        83 ~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~-g~~~~~~~-~~~~~~~-~~i~~d~-  155 (300)
T 2qc5_A           83 NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN--GDRIGKLTAD-GTIYEYDL-PNKGSYP-AFITLGS-  155 (300)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT--TTEEEEECTT-SCEEEEEC-SSTTCCE-EEEEECT-
T ss_pred             CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC--CCeEEEECCC-CCEEEccC-CCCCCCc-eeEEECC-
Confidence            457778887 5554443221112222333 337788887642  3578999998 66554321 1111112 2222221 


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~  219 (373)
                        +     +++|+.....          ..+.+||. +++..... .+..       ......+.+  +|.+|+.. ...
T Consensus       156 --~-----g~l~v~~~~~----------~~i~~~~~-~g~~~~~~-~~~~-------~~~~~~i~~d~~g~l~v~~-~~~  208 (300)
T 2qc5_A          156 --D-----NALWFTENQN----------NSIGRITN-TGKLEEYP-LPTN-------AAAPVGITSGNDGALWFVE-IMG  208 (300)
T ss_dssp             --T-----SSEEEEETTT----------TEEEEECT-TCCEEEEE-CSST-------TCCEEEEEECTTSSEEEEE-TTT
T ss_pred             --C-----CCEEEEecCC----------CeEEEECC-CCcEEEee-CCCC-------CCCcceEEECCCCCEEEEc-cCC
Confidence              1     5688765221          35888988 66665542 2111       011112333  57888873 345


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCc-eeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEF-ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ..|..||+ ++++.....  +..... ..++. -+|.||+.... ...+.++++ .    .+.... .++....      
T Consensus       209 ~~i~~~~~-~g~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~----g~~~~~-~~~~~~~------  272 (300)
T 2qc5_A          209 NKIGRITT-TGEISEYDI--PTPNARPHAITAGKNSEIWFTEWG-ANQIGRITN-D----NTIQEY-QLQTENA------  272 (300)
T ss_dssp             TEEEEECT-TCCEEEEEC--SSTTCCEEEEEECSTTCEEEEETT-TTEEEEECT-T----SCEEEE-ECCSTTC------
T ss_pred             CEEEEEcC-CCcEEEEEC--CCCCCCceEEEECCCCCEEEeccC-CCeEEEECC-C----CcEEEE-ECCccCC------
Confidence            67999999 666665522  221222 23333 26788887532 223444444 1    344332 2331111      


Q ss_pred             CCCCCceEEE-ecCCEEEEEEcCCccEEEEEcc
Q 046684          298 KASWGGTRCA-AGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       298 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                          .+..++ ..++.||+... . .+..||++
T Consensus       273 ----~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          273 ----EPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             ----CCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             ----ccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence                123333 34678888766 5 89999986

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.32  E-value=7e-05  Score=71.72  Aligned_cols=35  Identities=23%  Similarity=0.484  Sum_probs=29.4

Q ss_pred             CCCcchHHHHHHHHhcCC-hhhHHHhhcccccchhc
Q 046684            1 MWSNLHLDVLANIFSFLS-PDSLARAKSVCSHWHTC   35 (373)
Q Consensus         1 ~~~~Lp~dll~~Il~rLP-~~~l~r~r~Vck~W~~l   35 (373)
                      +|+.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            589999999999999999 99999999999999988

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.26  E-value=0.029  Score=50.90  Aligned_cols=225  Identities=12%  Similarity=0.011  Sum_probs=109.4

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeE-EeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPV-SSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~-~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      ..+..+|.....-..+...  ......+ -+.+| .|+..+.......++++|..+++.+.+...+.    ........+
T Consensus       159 ~~i~i~d~~g~~~~~l~~~--~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~----~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRS--PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----HNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEE--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS----CEEEEEECT
T ss_pred             ceEEEEcCCCCCCEEEeCC--CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC----cccCEEEcC
Confidence            6788888765544433211  1111122 23344 44444432234689999999988766543322    112222222


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCE-EEEEEc-C
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGM-LYWITS-A  217 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~gg-~  217 (373)
                      .+       .+|++.+..+        ....++++|..+++.+.+...+.         .....++ -+|+ |++... .
T Consensus       233 dg-------~~la~~~~~~--------g~~~i~~~d~~~~~~~~l~~~~~---------~~~~~~~spdg~~l~~~s~~~  288 (415)
T 2hqs_A          233 DG-------SKLAFALSKT--------GSLNLYVMDLASGQIRQVTDGRS---------NNTEPTWFPDSQNLAFTSDQA  288 (415)
T ss_dssp             TS-------SEEEEEECTT--------SSCEEEEEETTTCCEEECCCCSS---------CEEEEEECTTSSEEEEEECTT
T ss_pred             CC-------CEEEEEEecC--------CCceEEEEECCCCCEEeCcCCCC---------cccceEECCCCCEEEEEECCC
Confidence            11       3455454322        13579999998887665544321         0011122 2455 444432 1


Q ss_pred             CceEEEEEECCCCcEEecccCCCCCCCceeEE-EECCEEEEEEeecCC--ceEEEEeecCCCCCCeEEEEeechhhhhhh
Q 046684          218 RAYSVIGFDIESNTWRELSAPMADRLEFATLV-SRNQKLTLIGGTCGG--DACVWELSEGGDDDIWCLIEKVPIEMGMRL  294 (373)
Q Consensus       218 ~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~-~~~g~l~~~gg~~~~--~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~  294 (373)
                      ....|+.+|+.+++-..+ .. ... ....+. .-+|+..++......  .+.+|+++.    .....+..-.  . .  
T Consensus       289 g~~~i~~~d~~~~~~~~l-~~-~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~----~~~~~l~~~~--~-~--  356 (415)
T 2hqs_A          289 GRPQVYKVNINGGAPQRI-TW-EGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----GGVQVLSSTF--L-D--  356 (415)
T ss_dssp             SSCEEEEEETTSSCCEEC-CC-SSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTT----CCEEECCCSS--S-C--
T ss_pred             CCcEEEEEECCCCCEEEE-ec-CCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCC----CCEEEecCCC--C-c--
Confidence            234799999988775554 11 111 111122 236665555544322  356666644    5443322111  0 0  


Q ss_pred             cCCCCCCCceEEEec-CCEEEEEEcCC--ccEEEEEccccCCcccEEEec
Q 046684          295 SGGKASWGGTRCAAG-NGAICLYREVG--LGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       295 ~~~~~~~~~~~~~~~-~~~i~~~~~~~--~~~~~yd~~~~~~~~~W~~~~  341 (373)
                              ....... +..|++.+...  ..++.+|++  .+  ..+.++
T Consensus       357 --------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~--g~--~~~~l~  394 (415)
T 2hqs_A          357 --------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GR--FKARLP  394 (415)
T ss_dssp             --------EEEEECTTSSEEEEEEEETTEEEEEEEETT--SC--CEEECC
T ss_pred             --------CCeEEcCCCCEEEEEEcCCCccEEEEEECC--CC--cEEEee
Confidence                    1222333 44555544332  269999998  77  655554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.035  Score=48.91  Aligned_cols=142  Identities=13%  Similarity=0.136  Sum_probs=77.0

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEE-C--CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc-
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-R--GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF-  245 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~--g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~-  245 (373)
                      ..+.+||..+++|..+.....      ....-..+++. +  +.+.+.+ .....|..||+.+..-... ......... 
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~-~~~~~~~~~v  150 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAV------HSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKENGTTSP-IIIDAHAIGV  150 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECC------CSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCTTSCCCE-EEEECCTTCE
T ss_pred             CEEEEEEcCCCceeEeeeecC------CCcceEEEEeCCCCCCCEEEEe-cCCCcEEEEecCCCCceee-EEecCCCCce
Confidence            358899999988766654421      00011111222 2  4455553 4567889999887632211 111111111 


Q ss_pred             eeEEEE--------------CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecC-
Q 046684          246 ATLVSR--------------NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGN-  310 (373)
Q Consensus       246 ~~~~~~--------------~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~-  310 (373)
                      ..+...              ++.+++.++. +..+.+|++..  ....+..+..+......         ....+...+ 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~~~~h~~~---------v~~~~~sp~~  218 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNS--DAQTYVLESTLEGHSDW---------VRDVAWSPTV  218 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEET-TSCEEEEEEET--TTTEEEEEEEECCCSSC---------EEEEEECCCC
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeC-CCeEEEEEecC--CCcceeeEEEEecccCc---------EeEEEECCCC
Confidence            122222              3666666654 44589999987  55567776665432110         012222234 


Q ss_pred             --CEEEEEEcCCccEEEEEccccCC
Q 046684          311 --GAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       311 --~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                        +.+++.++..+.+.+||.+  +.
T Consensus       219 ~~~~~l~s~~~dg~i~iwd~~--~~  241 (379)
T 3jrp_A          219 LLRSYLASVSQDRTCIIWTQD--NE  241 (379)
T ss_dssp             SSSEEEEEEETTSCEEEEEES--ST
T ss_pred             CCCCeEEEEeCCCEEEEEeCC--CC
Confidence              6888888888889999999  65

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.20  E-value=0.092  Score=45.43  Aligned_cols=210  Identities=7%  Similarity=0.029  Sum_probs=99.5

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCc--ccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccc
Q 046684           93 IGSFLLLRPINSTILQLVLCNPF--TRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES  170 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~--t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~  170 (373)
                      .+..+++.+..  ...+.+|+..  +++++.+...+.......++ .. +.+       ..+|+.+..+          .
T Consensus        48 dg~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s-~dg-------~~l~~~~~~~----------~  106 (343)
T 1ri6_A           48 DKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAESALPGSLTHIS-TD-HQG-------QFVFVGSYNA----------G  106 (343)
T ss_dssp             TSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEECSSCCSEEE-EC-TTS-------SEEEEEETTT----------T
T ss_pred             CCCEEEEeecC--CCeEEEEEecCCCCceeeccccccCCCCcEEE-Ec-CCC-------CEEEEEecCC----------C
Confidence            34557776653  2566666654  77776554433222222222 21 111       4466655322          3


Q ss_pred             eEEEEECCCCc-eeeecCCCccccccceeccCCceEEE-CC-EEEEEEcCCceEEEEEECCC-CcEEecc---cCCCCCC
Q 046684          171 MVEMYDSRHDA-WQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITSARAYSVIGFDIES-NTWRELS---APMADRL  243 (373)
Q Consensus       171 ~~~~yd~~~~~-W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~~~~~i~~yd~~~-~~w~~~~---~~~p~~~  243 (373)
                      .+.+||...+. .+.+...+.       ......+++. +| .+|+. ......+..||+.+ ++...+.   ...+...
T Consensus       107 ~i~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  178 (343)
T 1ri6_A          107 NVSVTRLEDGLPVGVVDVVEG-------LDGCHSANISPDNRTLWVP-ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA  178 (343)
T ss_dssp             EEEEEEEETTEEEEEEEEECC-------CTTBCCCEECTTSSEEEEE-EGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred             eEEEEECCCCccccccccccC-------CCCceEEEECCCCCEEEEe-cCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence            57788774222 222222210       0011222332 34 46655 33456799999987 6665331   1112111


Q ss_pred             CceeEEE-ECCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEee---chhhhhhhcCCCCCCCceEEEe--cCCEEEEE
Q 046684          244 EFATLVS-RNQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKV---PIEMGMRLSGGKASWGGTRCAA--GNGAICLY  316 (373)
Q Consensus       244 ~~~~~~~-~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~---p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~  316 (373)
                      .-..++. -+|+ ||+.+ .....+.+|+++.  .+..++.+...   +.....       ......+..  .+..||+.
T Consensus       179 ~~~~~~~~pdg~~l~~~~-~~~~~i~~~~~~~--~~g~~~~~~~~~~~~~~~~~-------~~~~~~i~~s~dg~~l~v~  248 (343)
T 1ri6_A          179 GPRHMVFHPNEQYAYCVN-ELNSSVDVWELKD--PHGNIECVQTLDMMPENFSD-------TRWAADIHITPDGRHLYAC  248 (343)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTTTEEEEEESSC--TTSCCEEEEEEECSCTTCCS-------CCCEEEEEECTTSSEEEEE
T ss_pred             CcceEEECCCCCEEEEEe-CCCCEEEEEEecC--CCCcEEEEeeccccCccccc-------cCCccceEECCCCCEEEEE
Confidence            1112222 2555 55544 3444588999965  44566544332   221000       000112222  34578777


Q ss_pred             EcCCccEEEEEccccCCcccEEEeccc
Q 046684          317 REVGLGMIIWREDEDKRKWEWVWVGGC  343 (373)
Q Consensus       317 ~~~~~~~~~yd~~~~~~~~~W~~~~~~  343 (373)
                      +...+.+.+||++.+++  +++.+...
T Consensus       249 ~~~~~~i~v~d~~~~~~--~~~~~~~~  273 (343)
T 1ri6_A          249 DRTASLITVFSVSEDGS--VLSKEGFQ  273 (343)
T ss_dssp             ETTTTEEEEEEECTTSC--CEEEEEEE
T ss_pred             ecCCCEEEEEEEcCCCC--ceEEeeee
Confidence            76677899999873334  45555443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.20  E-value=0.028  Score=47.45  Aligned_cols=230  Identities=11%  Similarity=-0.025  Sum_probs=110.5

Q ss_pred             CCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcc-cceeccCCCCCCCCCCeEEEEEc
Q 046684           61 RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFT-RQFRYLPLLNVSRTNPAVGIVME  139 (373)
Q Consensus        61 ~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t-~~w~~lp~~~~~~~~~~~~~~~~  139 (373)
                      ....++.+|..++....+...... ......+.+|..++.++   ...++++|..+ ++...+...........+.+.  
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s--   93 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPEL-FEAPNWSPDGKYLLLNS---EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS--   93 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSC-CEEEEECTTSSEEEEEE---TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC--
T ss_pred             cceeEEEEeCCCCceeeeccCCcc-eEeeEECCCCCEEEEEc---CCeEEEEeCCCCCCceEeccccccccccceEEC--
Confidence            346777888877765544221111 11112233554444444   46899999999 777665433221111122221  


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCE-EEEEEc-
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGM-LYWITS-  216 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~-ly~~gg-  216 (373)
                      +        +++.++++...      ......++.++..++.-+.+....       .   ....++. +|. +++.+. 
T Consensus        94 p--------dg~~l~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~-------~---~~~~~~spdg~~l~~~~~~  149 (297)
T 2ojh_A           94 P--------DGALYAISDKV------EFGKSAIYLLPSTGGTPRLMTKNL-------P---SYWHGWSPDGKSFTYCGIR  149 (297)
T ss_dssp             T--------TSSEEEEEECT------TTSSCEEEEEETTCCCCEECCSSS-------S---EEEEEECTTSSEEEEEEEE
T ss_pred             C--------CCCEEEEEEeC------CCCcceEEEEECCCCceEEeecCC-------C---ccceEECCCCCEEEEEECC
Confidence            1        14444444321      113467888888777655444321       0   0111221 444 444432 


Q ss_pred             CCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhc
Q 046684          217 ARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLS  295 (373)
Q Consensus       217 ~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~  295 (373)
                      .....++.+|..+++...+ ...+...  ..+.. -+|+.+++.+.....+.+|.++.  .......+........    
T Consensus       150 ~~~~~l~~~~~~~~~~~~~-~~~~~~~--~~~~~s~dg~~l~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~----  220 (297)
T 2ojh_A          150 DQVFDIYSMDIDSGVETRL-THGEGRN--DGPDYSPDGRWIYFNSSRTGQMQIWRVRV--DGSSVERITDSAYGDW----  220 (297)
T ss_dssp             TTEEEEEEEETTTCCEEEC-CCSSSCE--EEEEECTTSSEEEEEECTTSSCEEEEEET--TSSCEEECCCCSEEEE----
T ss_pred             CCceEEEEEECCCCcceEc-ccCCCcc--ccceECCCCCEEEEEecCCCCccEEEECC--CCCCcEEEecCCcccC----
Confidence            2234677777877776665 2222111  12222 25665555444344568999875  3344333322111100    


Q ss_pred             CCCCCCCceEEEecCCEEEEEEcC----------CccEEEEEccccCCcccEEEe
Q 046684          296 GGKASWGGTRCAAGNGAICLYREV----------GLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       296 ~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~yd~~~~~~~~~W~~~  340 (373)
                             .......+..|++....          ...+.+||++  ++  +...+
T Consensus       221 -------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~--~~--~~~~~  264 (297)
T 2ojh_A          221 -------FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD--GG--NVETL  264 (297)
T ss_dssp             -------EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT--SC--SCEEE
T ss_pred             -------CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC--CC--Cceee
Confidence                   12222234455555432          2469999999  77  55444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.17  E-value=0.12  Score=46.24  Aligned_cols=198  Identities=8%  Similarity=0.006  Sum_probs=95.2

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceec-----cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRY-----LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY  168 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~-----lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~  168 (373)
                      ++.+++.++.  ...+.+||..++....     +..+..... ...++...+.+       .++++.|+.+         
T Consensus        93 ~~~~l~s~s~--dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~-------~~~l~s~~~d---------  153 (402)
T 2aq5_A           93 NDNVIASGSE--DCTVMVWEIPDGGLVLPLREPVITLEGHTK-RVGIVAWHPTA-------QNVLLSAGCD---------  153 (402)
T ss_dssp             CTTEEEEEET--TSEEEEEECCTTCCSSCBCSCSEEEECCSS-CEEEEEECSSB-------TTEEEEEETT---------
T ss_pred             CCCEEEEEeC--CCeEEEEEccCCCCccccCCceEEecCCCC-eEEEEEECcCC-------CCEEEEEcCC---------
Confidence            4444444443  4679999998875422     111111111 11122222211       1466666554         


Q ss_pred             cceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEeccc-CCCCCC-Cc
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSA-PMADRL-EF  245 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~-~~p~~~-~~  245 (373)
                       ..+.+||..+++....-...      .....-..+++. +|.+.+.+ ...+.|..||+.+++-... . ...... ..
T Consensus       154 -g~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~  224 (402)
T 2aq5_A          154 -NVILVWDVGTGAAVLTLGPD------VHPDTIYSVDWSRDGALICTS-CRDKRVRVIEPRKGTVVAE-KDRPHEGTRPV  224 (402)
T ss_dssp             -SCEEEEETTTTEEEEEECTT------TCCSCEEEEEECTTSSCEEEE-ETTSEEEEEETTTTEEEEE-EECSSCSSSCC
T ss_pred             -CEEEEEECCCCCccEEEecC------CCCCceEEEEECCCCCEEEEE-ecCCcEEEEeCCCCceeee-eccCCCCCcce
Confidence             35899999887643222100      000001111222 46555553 3467899999988765433 2 111111 11


Q ss_pred             eeEEEECCEEEEEEe--ecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccE
Q 046684          246 ATLVSRNQKLTLIGG--TCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGM  323 (373)
Q Consensus       246 ~~~~~~~g~l~~~gg--~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  323 (373)
                      .....-+|++++++.  ..+..+.+|++..  ....-. ...+....         ..........+..+++.+...+.+
T Consensus       225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~--~~~~~~-~~~~~~~~---------~v~~~~~s~~~~~l~~~g~~dg~i  292 (402)
T 2aq5_A          225 HAVFVSEGKILTTGFSRMSERQVALWDTKH--LEEPLS-LQELDTSS---------GVLLPFFDPDTNIVYLCGKGDSSI  292 (402)
T ss_dssp             EEEECSTTEEEEEEECTTCCEEEEEEETTB--CSSCSE-EEECCCCS---------SCEEEEEETTTTEEEEEETTCSCE
T ss_pred             EEEEcCCCcEEEEeccCCCCceEEEEcCcc--ccCCce-EEeccCCC---------ceeEEEEcCCCCEEEEEEcCCCeE
Confidence            222223677666653  2333488999865  111111 11221110         000122233456677777677789


Q ss_pred             EEEEccccCC
Q 046684          324 IIWREDEDKR  333 (373)
Q Consensus       324 ~~yd~~~~~~  333 (373)
                      .+||.+  ++
T Consensus       293 ~i~d~~--~~  300 (402)
T 2aq5_A          293 RYFEIT--SE  300 (402)
T ss_dssp             EEEEEC--SS
T ss_pred             EEEEec--CC
Confidence            999999  77

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.17  E-value=0.06  Score=45.70  Aligned_cols=213  Identities=10%  Similarity=-0.017  Sum_probs=109.2

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE-eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS-SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..+..||+. .+...+..+.....-..++ ..+|.+|+....  ...+.++|+. ++...+...... ..+. .+..++ 
T Consensus        41 ~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~v~~~d~~-g~~~~~~~~~~~-~~~~-~i~~~~-  113 (300)
T 2qc5_A           41 NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG--ANKIGKLSKK-GGFTEYPLPQPD-SGPY-GITEGL-  113 (300)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT--TTEEEEECTT-SCEEEEECSSTT-CCEE-EEEECS-
T ss_pred             CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC--CCeEEEECCC-CCeEEecCCCCC-CCCc-cceECC-
Confidence            467778887 6555443322111222233 346778886542  4579999998 666543221111 1122 222221 


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~  219 (373)
                        +     +++|+.....          ..+..||.. ++.+... .+..      . ........  +|.+|+.. ...
T Consensus       114 --~-----g~l~v~~~~~----------~~i~~~~~~-g~~~~~~-~~~~------~-~~~~~i~~d~~g~l~v~~-~~~  166 (300)
T 2qc5_A          114 --N-----GDIWFTQLNG----------DRIGKLTAD-GTIYEYD-LPNK------G-SYPAFITLGSDNALWFTE-NQN  166 (300)
T ss_dssp             --T-----TCEEEEETTT----------TEEEEECTT-SCEEEEE-CSST------T-CCEEEEEECTTSSEEEEE-TTT
T ss_pred             --C-----CCEEEEccCC----------CeEEEECCC-CCEEEcc-CCCC------C-CCceeEEECCCCCEEEEe-cCC
Confidence              1     6788765322          357888887 5555332 1110      0 11112223  57888773 345


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCc-eeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEF-ATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ..|..||+ +++...+.  .+..... ..++.- +|.||+.... ...+.++++ .    ...... .++...       
T Consensus       167 ~~i~~~~~-~g~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~----g~~~~~-~~~~~~-------  229 (300)
T 2qc5_A          167 NSIGRITN-TGKLEEYP--LPTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-T----GEISEY-DIPTPN-------  229 (300)
T ss_dssp             TEEEEECT-TCCEEEEE--CSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T----CCEEEE-ECSSTT-------
T ss_pred             CeEEEECC-CCcEEEee--CCCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-C----CcEEEE-ECCCCC-------
Confidence            68999999 66666552  2222222 233332 6788886532 223444444 2    444443 222111       


Q ss_pred             CCCCCceEEEe-cCCEEEEEEcCCccEEEEEcc
Q 046684          298 KASWGGTRCAA-GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       298 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~  329 (373)
                         ..+..++. .++.||+.....+.+..||++
T Consensus       230 ---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          230 ---ARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             ---CCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             ---CCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence               01233443 367899987666789999986

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.16  E-value=0.11  Score=45.64  Aligned_cols=117  Identities=9%  Similarity=0.046  Sum_probs=65.1

Q ss_pred             CCE-EEEEEcCCceEEEEEECCCCcEEecc--cCCCCCCCce-eEEE-ECCEEEEEEeec-CCceEEEEeecCCCCCCeE
Q 046684          208 RGM-LYWITSARAYSVIGFDIESNTWRELS--APMADRLEFA-TLVS-RNQKLTLIGGTC-GGDACVWELSEGGDDDIWC  281 (373)
Q Consensus       208 ~g~-ly~~gg~~~~~i~~yd~~~~~w~~~~--~~~p~~~~~~-~~~~-~~g~l~~~gg~~-~~~~~i~~~~~~~~~~~W~  281 (373)
                      +|+ +|+. ......|..||+.+++...+.  ...+...... .++. -+|+..++.... ...+.+|+++.  .+.+++
T Consensus       221 dg~~l~v~-~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~--~~g~~~  297 (361)
T 3scy_A          221 DGKFAYLI-NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE--TNGTLT  297 (361)
T ss_dssp             TSSEEEEE-ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT--TTCCEE
T ss_pred             CCCEEEEE-cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC--CCCcEE
Confidence            464 6666 445678999999887765441  1112211112 2322 266643344344 45589999975  557788


Q ss_pred             EEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEE--EccccCCcccEEEe
Q 046684          282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIW--REDEDKRKWEWVWV  340 (373)
Q Consensus       282 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~y--d~~~~~~~~~W~~~  340 (373)
                      .+..++.....         ....+...+..||+.+...+.+.+|  |++  ++  +-+.+
T Consensus       298 ~~~~~~~g~~~---------~~~~~spdg~~l~~~~~~~~~v~v~~~d~~--~g--~~~~~  345 (361)
T 3scy_A          298 KVGYQLTGIHP---------RNFIITPNGKYLLVACRDTNVIQIFERDQA--TG--LLTDI  345 (361)
T ss_dssp             EEEEEECSSCC---------CEEEECTTSCEEEEEETTTTEEEEEEECTT--TC--CEEEC
T ss_pred             EeeEecCCCCC---------ceEEECCCCCEEEEEECCCCCEEEEEEECC--CC--cEeec
Confidence            87776642111         1233333455688777566667775  555  77  55444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.13  E-value=0.059  Score=48.40  Aligned_cols=194  Identities=10%  Similarity=0.049  Sum_probs=97.9

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      +...+..++..+.   ...+.+||..+..-.. ..+..... ...++...+   +     ++.++.|+.+          
T Consensus       182 ~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~~~~~-~v~~~~~~~---~-----~~~l~s~~~d----------  238 (401)
T 4aez_A          182 LSWNRHVLSSGSR---SGAIHHHDVRIANHQI-GTLQGHSS-EVCGLAWRS---D-----GLQLASGGND----------  238 (401)
T ss_dssp             EEEETTEEEEEET---TSEEEEEETTSSSCEE-EEEECCSS-CEEEEEECT---T-----SSEEEEEETT----------
T ss_pred             EEECCCEEEEEcC---CCCEEEEecccCccee-eEEcCCCC-CeeEEEEcC---C-----CCEEEEEeCC----------
Confidence            4444554444444   5778899987533211 11111111 111222221   1     5566666554          


Q ss_pred             ceEEEEECCCCceee-ecCCCccccccceeccCCceEEE--CCEEEEEE-cCCceEEEEEECCCCcEEecccCCCCCCCc
Q 046684          170 SMVEMYDSRHDAWQI-IGSMPVEFAVRLTVWTPNESVCT--RGMLYWIT-SARAYSVIGFDIESNTWRELSAPMADRLEF  245 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~g-g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~  245 (373)
                      ..+.+||..++.=.. +...         ...-..+++.  +..+.+.+ |.....+..||..+++-... ....  ..-
T Consensus       239 ~~v~iwd~~~~~~~~~~~~~---------~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~~~--~~v  306 (401)
T 4aez_A          239 NVVQIWDARSSIPKFTKTNH---------NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VDAG--SQV  306 (401)
T ss_dssp             SCEEEEETTCSSEEEEECCC---------SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EECS--SCE
T ss_pred             CeEEEccCCCCCccEEecCC---------cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-EeCC--CcE
Confidence            368899987754221 1111         0111122332  23566665 33578899999987765433 2211  111


Q ss_pred             eeEEE-ECCEEEEE-EeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccE
Q 046684          246 ATLVS-RNQKLTLI-GGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGM  323 (373)
Q Consensus       246 ~~~~~-~~g~l~~~-gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  323 (373)
                      ..+.. -+++.+++ +|..+..+.+|++..    .....+..++.....         ........++..++.++.++.+
T Consensus       307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~----~~~~~~~~~~~h~~~---------v~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSS----SGLTKQVDIPAHDTR---------VLYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             EEEEECSSSSEEEEEECTTTCEEEEEEEET----TEEEEEEEEECCSSC---------CCEEEECTTSSEEEEECTTSEE
T ss_pred             EEEEECCCCCeEEEEeecCCCcEEEEecCC----ccceeEEEecCCCCC---------EEEEEECCCCCEEEEEeCCCcE
Confidence            12222 24444444 355556689999976    556665554321110         0233334466677777777889


Q ss_pred             EEEEccccCC
Q 046684          324 IIWREDEDKR  333 (373)
Q Consensus       324 ~~yd~~~~~~  333 (373)
                      .+||+.  ++
T Consensus       374 ~iw~~~--~~  381 (401)
T 4aez_A          374 KFWRVY--DG  381 (401)
T ss_dssp             EEEECC--C-
T ss_pred             EEEECC--CC
Confidence            999999  76

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.11  E-value=0.014  Score=51.74  Aligned_cols=193  Identities=8%  Similarity=-0.012  Sum_probs=87.8

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeE-EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccc
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAV-GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES  170 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~-~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~  170 (373)
                      +.++.++..+.   ...+.+||..+++-..+...........+ ++...+        +++.++.|+.+          .
T Consensus       103 s~d~~~l~~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--------dg~~l~sgs~d----------g  161 (357)
T 4g56_B          103 VSEKGILVASD---SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS--------DGTQAVSGGKD----------F  161 (357)
T ss_dssp             ETTTEEEEEET---TSCEEEC--------CCCCEEECCCSSCEEEEEECS--------SSSEEEEEETT----------S
T ss_pred             cCCCCEEEEEC---CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC--------CCCEEEEEeCC----------C
Confidence            34666666554   46789999988765443322211111112 222211        15566666554          3


Q ss_pred             eEEEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE
Q 046684          171 MVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL  248 (373)
Q Consensus       171 ~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~  248 (373)
                      .+.+||..+++-...-...       .. .-..+++. ++ .+++.+ .....|..+|+.+.+-... ............
T Consensus       162 ~v~iwd~~~~~~~~~~~~h-------~~-~v~~v~~s~~~~~~~~s~-~~dg~v~~wd~~~~~~~~~-~~~~~~~~~v~~  231 (357)
T 4g56_B          162 SVKVWDLSQKAVLKSYNAH-------SS-EVNCVAACPGKDTIFLSC-GEDGRILLWDTRKPKPATR-IDFCASDTIPTS  231 (357)
T ss_dssp             CEEEEETTTTEEEEEECCC-------SS-CEEEEEECTTCSSCEEEE-ETTSCEEECCTTSSSCBCB-CCCTTCCSCEEE
T ss_pred             eEEEEECCCCcEEEEEcCC-------CC-CEEEEEEccCCCceeeee-ccCCceEEEECCCCceeee-eeeccccccccc
Confidence            5889998876532221110       00 00111221 23 344443 3456788899887654333 222222222222


Q ss_pred             EEE---CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE-ecCCEEEEEEcCCccEE
Q 046684          249 VSR---NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-AGNGAICLYREVGLGMI  324 (373)
Q Consensus       249 ~~~---~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~  324 (373)
                      +..   ++.+++.++ .+..+.+|++..    .+  .+..+.....        .. ...++ ..++.+++.++.++.+.
T Consensus       232 v~~sp~~~~~la~g~-~d~~i~~wd~~~----~~--~~~~~~~~~~--------~v-~~l~~sp~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          232 VTWHPEKDDTFACGD-ETGNVSLVNIKN----PD--SAQTSAVHSQ--------NI-TGLAYSYHSSPFLASISEDCTVA  295 (357)
T ss_dssp             EEECTTSTTEEEEEE-SSSCEEEEESSC----GG--GCEEECCCSS--------CE-EEEEECSSSSCCEEEEETTSCEE
T ss_pred             hhhhhcccceEEEee-cccceeEEECCC----Cc--EeEEEeccce--------eE-EEEEEcCCCCCEEEEEeCCCEEE
Confidence            332   355665554 444579999865    21  1112211000        00 11122 23456777777777899


Q ss_pred             EEEccccCC
Q 046684          325 IWREDEDKR  333 (373)
Q Consensus       325 ~yd~~~~~~  333 (373)
                      +||.+  ++
T Consensus       296 iwd~~--~~  302 (357)
T 4g56_B          296 VLDAD--FS  302 (357)
T ss_dssp             EECTT--SC
T ss_pred             EEECC--CC
Confidence            99999  88

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.10  E-value=0.021  Score=49.55  Aligned_cols=190  Identities=8%  Similarity=0.041  Sum_probs=99.1

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ...+.+|+....  ...+.++|+.+++....-..+  ....  .+...+.+       ..+|+.+...          ..
T Consensus         7 ~~~~~~~v~~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~--~~~~s~dg-------~~l~~~~~~~----------~~   63 (331)
T 3u4y_A            7 TTSNFGIVVEQH--LRRISFFSTDTLEILNQITLG--YDFV--DTAITSDC-------SNVVVTSDFC----------QT   63 (331)
T ss_dssp             CCCCEEEEEEGG--GTEEEEEETTTCCEEEEEECC--CCEE--EEEECSSS-------CEEEEEESTT----------CE
T ss_pred             CCCCEEEEEecC--CCeEEEEeCcccceeeeEEcc--CCcc--eEEEcCCC-------CEEEEEeCCC----------Ce
Confidence            345677776653  468999999998875532222  1112  22221111       4577765432          37


Q ss_pred             EEEEECCCCce-eeecCCCccccccceeccCCc-eEEE-CC-EEEEEEcCCce--EEEEEECCCCcEEecccCCCCCCCc
Q 046684          172 VEMYDSRHDAW-QIIGSMPVEFAVRLTVWTPNE-SVCT-RG-MLYWITSARAY--SVIGFDIESNTWRELSAPMADRLEF  245 (373)
Q Consensus       172 ~~~yd~~~~~W-~~~~~~p~~~~~~~~~~~~~~-~~~~-~g-~ly~~gg~~~~--~i~~yd~~~~~w~~~~~~~p~~~~~  245 (373)
                      +.++|..+++- ......         ...... .++. +| .+| .......  .|..+|+++++.... .+...  ..
T Consensus        64 i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~--~~  130 (331)
T 3u4y_A           64 LVQIETQLEPPKVVAIQE---------GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFIST-IPIPY--DA  130 (331)
T ss_dssp             EEEEECSSSSCEEEEEEE---------CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEE-EECCT--TE
T ss_pred             EEEEECCCCceeEEeccc---------CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEE-EECCC--Cc
Confidence            89999988764 111111         011112 2222 34 456 4322223  899999998876543 22211  11


Q ss_pred             eeEEEE-CCE-EEEEEeecCCc-eEEEEeecCCCCCCeEE-EEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcC
Q 046684          246 ATLVSR-NQK-LTLIGGTCGGD-ACVWELSEGGDDDIWCL-IEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREV  319 (373)
Q Consensus       246 ~~~~~~-~g~-l~~~gg~~~~~-~~i~~~~~~~~~~~W~~-v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~  319 (373)
                      ..++.. +|+ ||+.+. .... +.+|+++.  +...... ...++....           +..+..  .+..+|+.+..
T Consensus       131 ~~~~~spdg~~l~~~~~-~~~~~i~~~~~~~--~g~~~~~~~~~~~~~~~-----------~~~~~~spdg~~l~v~~~~  196 (331)
T 3u4y_A          131 VGIAISPNGNGLILIDR-SSANTVRRFKIDA--DGVLFDTGQEFISGGTR-----------PFNITFTPDGNFAFVANLI  196 (331)
T ss_dssp             EEEEECTTSSCEEEEEE-TTTTEEEEEEECT--TCCEEEEEEEEECSSSS-----------EEEEEECTTSSEEEEEETT
T ss_pred             cceEECCCCCEEEEEec-CCCceEEEEEECC--CCcEeecCCccccCCCC-----------ccceEECCCCCEEEEEeCC
Confidence            233332 554 666654 3344 78999875  2221111 111211110           122222  34568888877


Q ss_pred             CccEEEEEccccCC
Q 046684          320 GLGMIIWREDEDKR  333 (373)
Q Consensus       320 ~~~~~~yd~~~~~~  333 (373)
                      .+.+.+||++  ++
T Consensus       197 ~~~v~v~d~~--~~  208 (331)
T 3u4y_A          197 GNSIGILETQ--NP  208 (331)
T ss_dssp             TTEEEEEECS--ST
T ss_pred             CCeEEEEECC--CC
Confidence            7789999999  77

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.10  E-value=0.099  Score=45.20  Aligned_cols=243  Identities=8%  Similarity=-0.016  Sum_probs=114.8

Q ss_pred             eeEEEEeCCCCCc-c-ccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           63 LCCYVHNPVSDKW-H-VLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w-~-~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      ..++.+|+.+.+. . .+.....+........-+..+++..+......+.+||+.+++....-+.  ... +. .+...+
T Consensus        62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~-~~-~~~~sp  137 (331)
T 3u4y_A           62 QTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYD-AV-GIAISP  137 (331)
T ss_dssp             CEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTT-EE-EEEECT
T ss_pred             CeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--CCC-cc-ceEECC
Confidence            4777889887764 2 2222222332233334455677433321222899999998876443111  111 11 222222


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc-eeee--cCCCccccccceeccCCceEE-ECCE-EEEEE
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA-WQII--GSMPVEFAVRLTVWTPNESVC-TRGM-LYWIT  215 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~-W~~~--~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~g  215 (373)
                      .+       ..+|+.+...         ...+.+|+...+. -...  ..++.       .......++ -+|+ +|+. 
T Consensus       138 dg-------~~l~~~~~~~---------~~~i~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~spdg~~l~v~-  193 (331)
T 3u4y_A          138 NG-------NGLILIDRSS---------ANTVRRFKIDADGVLFDTGQEFISG-------GTRPFNITFTPDGNFAFVA-  193 (331)
T ss_dssp             TS-------SCEEEEEETT---------TTEEEEEEECTTCCEEEEEEEEECS-------SSSEEEEEECTTSSEEEEE-
T ss_pred             CC-------CEEEEEecCC---------CceEEEEEECCCCcEeecCCccccC-------CCCccceEECCCCCEEEEE-
Confidence            11       3477765332         1226666654322 1111  00000       001111122 2465 6766 


Q ss_pred             cCCceEEEEEECCCCcE-EecccCCCCCCCceeEEE-ECCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh-
Q 046684          216 SARAYSVIGFDIESNTW-RELSAPMADRLEFATLVS-RNQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG-  291 (373)
Q Consensus       216 g~~~~~i~~yd~~~~~w-~~~~~~~p~~~~~~~~~~-~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~-  291 (373)
                      +.....+..||+++++. ..+ ...+.......++. -+|+ ||+... ....+.+|+++.    .+.+.+..++.... 
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~----~~~~~~~~~~~~~~~  267 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLL-NAVGTNNLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLS----GTLSFVKSFGHGLLI  267 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEE-EEEECSSCCCCEEECTTSSEEEEECS-SEEEEEEEETTT----TEEEEEEEEECCCCC
T ss_pred             eCCCCeEEEEECCCCccccee-eeccCCCCCceEEECCCCCEEEEEEc-CCCEEEEEECCC----Cceeeeccccccccc
Confidence            44567899999987764 111 11111121122333 3566 555432 223366777654    66655655443210 


Q ss_pred             -hhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccC
Q 046684          292 -MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLT  346 (373)
Q Consensus       292 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~  346 (373)
                       ......   .....+...+..||+.+...+.+.+||++  ++  .=..+...+..
T Consensus       268 ~~~~~~~---~~~~~~spdg~~l~v~~~~~~~v~v~d~~--~~--~~~~~~~~~~~  316 (331)
T 3u4y_A          268 DPRPLFG---ANQMALNKTETKLFISANISRELKVFTIS--GK--VVGYVAGIEAN  316 (331)
T ss_dssp             CCGGGTT---CCCEEECTTSSEEEEEETTTTEEEEEETT--SC--EEEECTTCCCB
T ss_pred             CCCCccc---ccceEECCCCCEEEEecCCCCcEEEEEec--CC--cccceeccccc
Confidence             000000   00134444566788888777789999999  77  54445544433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.089  Score=46.22  Aligned_cols=121  Identities=8%  Similarity=0.077  Sum_probs=61.5

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCc--EEecccCCCCCCCcee-EEEE-C---CEEEEEEeecCCceEEEEeecCCCCCCe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNT--WRELSAPMADRLEFAT-LVSR-N---QKLTLIGGTCGGDACVWELSEGGDDDIW  280 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~~~~-~~~~-~---g~l~~~gg~~~~~~~i~~~~~~~~~~~W  280 (373)
                      ++.+.+.+ .....|..||+.++.  +..+ ..+..+..... +... +   +.+++.++ .+..+.+|++..  ....+
T Consensus       171 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~dg~i~iwd~~~--~~~~~  245 (379)
T 3jrp_A          171 ESRKFVTG-GADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDN--EQGPW  245 (379)
T ss_dssp             TTCEEEEE-ETTSCEEEEEEETTTTEEEEE-EEECCCSSCEEEEEECCCCSSSEEEEEEE-TTSCEEEEEESS--TTSCC
T ss_pred             CCCEEEEE-eCCCeEEEEEecCCCcceeeE-EEEecccCcEeEEEECCCCCCCCeEEEEe-CCCEEEEEeCCC--CCccc
Confidence            35655554 345678888886543  4443 22322222222 2222 3   56666655 444589999986  33333


Q ss_pred             EEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccc
Q 046684          281 CLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCC  344 (373)
Q Consensus       281 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~  344 (373)
                      ....... ....       ..........++..++.++..+.+.+||.+. .+  +|..+....
T Consensus       246 ~~~~~~~-~~~~-------~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~--~~~~~~~~~  298 (379)
T 3jrp_A          246 KKTLLKE-EKFP-------DVLWRASWSLSGNVLALSGGDNKVTLWKENL-EG--KWEPAGEVH  298 (379)
T ss_dssp             EEEESSS-SCCS-------SCEEEEEECSSSCCEEEEESSSSEEEEEEEE-TT--EEEEEEEEC
T ss_pred             eeeeecc-ccCC-------CcEEEEEEcCCCCEEEEecCCCcEEEEeCCC-CC--cccccccee
Confidence            3221111 0000       0001222333556666666677899999872 34  677665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.07  E-value=0.0044  Score=52.05  Aligned_cols=106  Identities=15%  Similarity=0.026  Sum_probs=76.3

Q ss_pred             eEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684          204 SVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       204 ~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      ..+.++.||.-.|.... |.++|+++++-..- . ++....+.+++..+++||++.... .  .+|.++.    ++-+.+
T Consensus        60 L~~~~~~Ly~stG~~g~-v~~iD~~Tgkv~~~-~-l~~~~FgeGit~~g~~Ly~ltw~~-~--~v~V~D~----~Tl~~~  129 (268)
T 3nok_A           60 LVFHQGHFFESTGHQGT-LRQLSLESAQPVWM-E-RLGNIFAEGLASDGERLYQLTWTE-G--LLFTWSG----MPPQRE  129 (268)
T ss_dssp             EEEETTEEEEEETTTTE-EEECCSSCSSCSEE-E-ECTTCCEEEEEECSSCEEEEESSS-C--EEEEEET----TTTEEE
T ss_pred             EEEECCEEEEEcCCCCE-EEEEECCCCcEEeE-E-CCCCcceeEEEEeCCEEEEEEccC-C--EEEEEEC----CcCcEE
Confidence            35567899998765434 99999999876554 3 444444566888899999986433 2  4566654    667888


Q ss_pred             EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          284 EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+++.+.-           +.+++..++.||+.++ ++.+..+|++  +.
T Consensus       130 ~ti~~~~e-----------GwGLt~Dg~~L~vSdG-s~~l~~iDp~--T~  165 (268)
T 3nok_A          130 RTTRYSGE-----------GWGLCYWNGKLVRSDG-GTMLTFHEPD--GF  165 (268)
T ss_dssp             EEEECSSC-----------CCCEEEETTEEEEECS-SSEEEEECTT--TC
T ss_pred             EEEeCCCc-----------eeEEecCCCEEEEECC-CCEEEEEcCC--CC
Confidence            88776421           4677778899999875 7799999999  86

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.06  E-value=0.043  Score=48.27  Aligned_cols=231  Identities=8%  Similarity=-0.012  Sum_probs=106.4

Q ss_pred             eeEEEEeCCCCCccccCC-CCCCCCceeEE-eeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEc
Q 046684           63 LCCYVHNPVSDKWHVLSL-DFLPYPVRPVS-SIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVME  139 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~-~~~~~~~~~~~-~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~  139 (373)
                      ..+..||..+..+..+.. ......-.+++ +.+| +++..+.   ...+.+||..++++.....+...... ..++...
T Consensus        30 ~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~-v~~~~~~  105 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT---DRNAYVWTLKGRTWKPTLVILRINRA-ARCVRWA  105 (372)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET---TSCEEEEEEETTEEEEEEECCCCSSC-EEEEEEC
T ss_pred             CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC---CCeEEEEECCCCeeeeeEEeecCCCc-eeEEEEC
Confidence            466678877775433321 11122222232 2234 4444443   46789999988876543222211111 1122221


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc-eeeecCCCccccccceeccCCceEEE-CCEEEEEEcC
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA-WQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSA  217 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~  217 (373)
                      +   +     ++.++.|+.+          ..+.+||..++. |.........    + ...-...++. ++...+.+ .
T Consensus       106 ~---~-----~~~l~~~~~d----------~~v~i~d~~~~~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~l~~~-~  161 (372)
T 1k8k_C          106 P---N-----EKKFAVGSGS----------RVISICYFEQENDWWVCKHIKKP----I-RSTVLSLDWHPNSVLLAAG-S  161 (372)
T ss_dssp             T---T-----SSEEEEEETT----------SSEEEEEEETTTTEEEEEEECTT----C-CSCEEEEEECTTSSEEEEE-E
T ss_pred             C---C-----CCEEEEEeCC----------CEEEEEEecCCCcceeeeeeecc----c-CCCeeEEEEcCCCCEEEEE-c
Confidence            1   1     4455555443          346777766543 3322221100    0 0001111222 45555553 3


Q ss_pred             CceEEEEEECCCCc----------------EEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCC
Q 046684          218 RAYSVIGFDIESNT----------------WRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDI  279 (373)
Q Consensus       218 ~~~~i~~yd~~~~~----------------w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~  279 (373)
                      ....+..||+....                -..+ ..+.........+..  ++.+++.++ .+..+.+|++..    .+
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~----~~  235 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM-FESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADK----KM  235 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE-EECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGG----TT
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhhe-EecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCC----Cc
Confidence            46678889964211                0111 111111111222222  555555554 445589999975    32


Q ss_pred             eEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccC--CcccEEEeccc
Q 046684          280 WCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDK--RKWEWVWVGGC  343 (373)
Q Consensus       280 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~--~~~~W~~~~~~  343 (373)
                        .+..+......         ........++.+++.+ ..+.+.+||..  +  +  +|..+...
T Consensus       236 --~~~~~~~~~~~---------v~~~~~~~~~~~l~~~-~d~~i~i~~~~--~~~~--~~~~~~~~  285 (372)
T 1k8k_C          236 --AVATLASETLP---------LLAVTFITESSLVAAG-HDCFPVLFTYD--SAAG--KLSFGGRL  285 (372)
T ss_dssp             --EEEEEECSSCC---------EEEEEEEETTEEEEEE-TTSSCEEEEEE--TTTT--EEEECCCC
T ss_pred             --eeEEEccCCCC---------eEEEEEecCCCEEEEE-eCCeEEEEEcc--CcCc--eEEEeecc
Confidence              33333211100         0122233466666655 66789999999  8  8  88776544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.04  E-value=0.016  Score=52.59  Aligned_cols=191  Identities=12%  Similarity=0.034  Sum_probs=95.2

Q ss_pred             EEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEE
Q 046684           97 LLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD  176 (373)
Q Consensus        97 l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd  176 (373)
                      +|+.+..+....++.+|+.++++..+..++.......+++  .+   +     .++++.++.+          ..+.+||
T Consensus        91 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--s~---~-----~~~~~~~~~~----------~~i~~~d  150 (433)
T 3bws_A           91 YRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRF--ID---N-----TRLAIPLLED----------EGMDVLD  150 (433)
T ss_dssp             EEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEE--SS---S-----SEEEEEBTTS----------SSEEEEE
T ss_pred             eeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEE--eC---C-----CeEEEEeCCC----------CeEEEEE
Confidence            3444433333478889997765555443332222222222  11   1     7788876543          3589999


Q ss_pred             CCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CC
Q 046684          177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQ  253 (373)
Q Consensus       177 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g  253 (373)
                      ..+++-......+..    .........+.+  +|.+++.+ .....+..||+++.+.... ..... .....++.. ++
T Consensus       151 ~~~g~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~-~~d~~v~~~d~~~~~~~~~-~~~~~-~~~~~~~~~~~~  223 (433)
T 3bws_A          151 INSGQTVRLSPPEKY----KKKLGFVETISIPEHNELWVSQ-MQANAVHVFDLKTLAYKAT-VDLTG-KWSKILLYDPIR  223 (433)
T ss_dssp             TTTCCEEEECCCHHH----HTTCCEEEEEEEGGGTEEEEEE-GGGTEEEEEETTTCCEEEE-EECSS-SSEEEEEEETTT
T ss_pred             CCCCeEeeecCcccc----cccCCceeEEEEcCCCEEEEEE-CCCCEEEEEECCCceEEEE-EcCCC-CCeeEEEEcCCC
Confidence            988876543332100    000001111223  57777775 4567899999988655433 12111 111222322 44


Q ss_pred             EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEc-------CCccEE
Q 046684          254 KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYRE-------VGLGMI  324 (373)
Q Consensus       254 ~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~-------~~~~~~  324 (373)
                      +..++.+..+..+.+|+++.    .+  .+..++....           ...+..  .++.|++.+.       ..+.+.
T Consensus       224 ~~l~~~~~~~~~i~~~d~~~----~~--~~~~~~~~~~-----------~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          224 DLVYCSNWISEDISVIDRKT----KL--EIRKTDKIGL-----------PRGLLLSKDGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTT----TE--EEEECCCCSE-----------EEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred             CEEEEEecCCCcEEEEECCC----Cc--EEEEecCCCC-----------ceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence            44433333444578888754    32  3333332111           122222  3446666543       245788


Q ss_pred             EEEccccCC
Q 046684          325 IWREDEDKR  333 (373)
Q Consensus       325 ~yd~~~~~~  333 (373)
                      +||++  ++
T Consensus       287 ~~d~~--~~  293 (433)
T 3bws_A          287 IYSMD--KE  293 (433)
T ss_dssp             EEETT--TT
T ss_pred             EEECC--CC
Confidence            99998  77

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.99  E-value=0.058  Score=45.76  Aligned_cols=177  Identities=8%  Similarity=0.073  Sum_probs=89.2

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPA  142 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~  142 (373)
                      ..+..||+.......+...............+|.+|+....  ...+.+||+..+....+.... ....+...... +  
T Consensus       100 ~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~-~~~~p~~i~~~-~--  173 (286)
T 1q7f_A          100 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK--VMRVIIFDQNGNVLHKFGCSK-HLEFPNGVVVN-D--  173 (286)
T ss_dssp             CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT--TTEEEEECTTSCEEEEEECTT-TCSSEEEEEEC-S--
T ss_pred             CEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECC--CCEEEEEcCCCCEEEEeCCCC-ccCCcEEEEEC-C--
Confidence            45667875444333332221111122223346778887643  467999998765444432111 11112222222 1  


Q ss_pred             CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCce
Q 046684          143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAY  220 (373)
Q Consensus       143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~  220 (373)
                            ++++|+.....          ..+.+||...+.-..+....       . ......+.+  +|.+|+.. ...+
T Consensus       174 ------~g~l~v~~~~~----------~~i~~~~~~g~~~~~~~~~g-------~-~~~p~~i~~d~~G~l~v~~-~~~~  228 (286)
T 1q7f_A          174 ------KQEIFISDNRA----------HCVKVFNYEGQYLRQIGGEG-------I-TNYPIGVGINSNGEILIAD-NHNN  228 (286)
T ss_dssp             ------SSEEEEEEGGG----------TEEEEEETTCCEEEEESCTT-------T-SCSEEEEEECTTCCEEEEE-CSSS
T ss_pred             ------CCCEEEEECCC----------CEEEEEcCCCCEEEEEccCC-------c-cCCCcEEEECCCCCEEEEe-CCCC
Confidence                  16788865332          46899998655433332210       0 011122333  57888885 3343


Q ss_pred             -EEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeec
Q 046684          221 -SVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       221 -~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                       .|..||+..+.-..+....+.. .-..++. -+|+||+..  .+..+.+|++..
T Consensus       229 ~~i~~~~~~g~~~~~~~~~~~~~-~~~~i~~~~~g~l~vs~--~~~~v~v~~~~~  280 (286)
T 1q7f_A          229 FNLTIFTQDGQLISALESKVKHA-QCFDVALMDDGSVVLAS--KDYRLYIYRYVQ  280 (286)
T ss_dssp             CEEEEECTTSCEEEEEEESSCCS-CEEEEEEETTTEEEEEE--TTTEEEEEECSC
T ss_pred             EEEEEECCCCCEEEEEcccCCCC-cceeEEECCCCcEEEEC--CCCeEEEEEccc
Confidence             8999998766555442221111 1123333 378888874  344588998754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.97  E-value=0.081  Score=45.44  Aligned_cols=190  Identities=13%  Similarity=0.062  Sum_probs=93.0

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|..++.++.  ...+.+||..+++-...  +..... ...++...+        +++.++.|+.+          ..+.
T Consensus        76 ~~~~l~s~~~--d~~i~vwd~~~~~~~~~--~~~~~~-~v~~~~~~~--------~~~~l~s~~~d----------~~i~  132 (312)
T 4ery_A           76 DSNLLVSASD--DKTLKIWDVSSGKCLKT--LKGHSN-YVFCCNFNP--------QSNLIVSGSFD----------ESVR  132 (312)
T ss_dssp             TSSEEEEEET--TSEEEEEETTTCCEEEE--EECCSS-CEEEEEECS--------SSSEEEEEETT----------SCEE
T ss_pred             CCCEEEEECC--CCEEEEEECCCCcEEEE--EcCCCC-CEEEEEEcC--------CCCEEEEEeCC----------CcEE
Confidence            4444444432  46789999988764321  111111 111122211        14456666554          3588


Q ss_pred             EEECCCCceee-ecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE
Q 046684          174 MYDSRHDAWQI-IGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS  250 (373)
Q Consensus       174 ~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~  250 (373)
                      +||.++++-.. +....          .....+.+  +|.+.+.+ .....+..||+.+++-... ...........+..
T Consensus       133 iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~  200 (312)
T 4ery_A          133 IWDVKTGKCLKTLPAHS----------DPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKT-LIDDDNPPVSFVKF  200 (312)
T ss_dssp             EEETTTCCEEEEECCCS----------SCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEE-ECCSSCCCEEEEEE
T ss_pred             EEECCCCEEEEEecCCC----------CcEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeE-EeccCCCceEEEEE
Confidence            99988765221 11110          01111222  45555554 4466789999987764332 11111111111222


Q ss_pred             -ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          251 -RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       251 -~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                       -+++.++.++ .+..+.+|++..    .  +.+..+......      ...........++.+++.++..+.+.+||.+
T Consensus       201 ~~~~~~l~~~~-~d~~i~iwd~~~----~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          201 SPNGKYILAAT-LDNTLKLWDYSK----G--KCLKTYTGHKNE------KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             CTTSSEEEEEE-TTTEEEEEETTT----T--EEEEEECSSCCS------SSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred             CCCCCEEEEEc-CCCeEEEEECCC----C--cEEEEEEecCCc------eEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence             2555555544 445589999864    3  233332211100      0000123333567777788888889999999


Q ss_pred             ccCC
Q 046684          330 EDKR  333 (373)
Q Consensus       330 ~~~~  333 (373)
                        ++
T Consensus       268 --~~  269 (312)
T 4ery_A          268 --TK  269 (312)
T ss_dssp             --TC
T ss_pred             --Cc
Confidence              77

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.92  E-value=0.094  Score=45.20  Aligned_cols=177  Identities=9%  Similarity=0.003  Sum_probs=88.0

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      ...+.+||..+++......+........ .+...+   +     ++.++.++.+          ..+.+||..+++-...
T Consensus       118 d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~---~-----~~~l~~~~~d----------g~v~~~d~~~~~~~~~  178 (337)
T 1gxr_A          118 ASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISP---D-----SKVCFSCCSD----------GNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSSSCEE-EEEECT---T-----SSEEEEEETT----------SCEEEEETTTTEEEEE
T ss_pred             CCcEEEEECCCCCcceeeecccCCCceE-EEEECC---C-----CCEEEEEeCC----------CcEEEEeCCCCceeee
Confidence            4679999998877443322222211111 122211   1     4455556543          3588999887653322


Q ss_pred             cCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeec
Q 046684          186 GSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTC  262 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~  262 (373)
                      -...         ......+.+  ++...+.+ .....+..||+.+.+-... ...+.  ....+.. -+++++++++ .
T Consensus       179 ~~~~---------~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~-~~~~~--~v~~~~~s~~~~~l~~~~-~  244 (337)
T 1gxr_A          179 FQGH---------TDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGRQLQQ-HDFTS--QIFSLGYCPTGEWLAVGM-E  244 (337)
T ss_dssp             ECCC---------SSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEE-EECSS--CEEEEEECTTSSEEEEEE-T
T ss_pred             eecc---------cCceEEEEECCCCCEEEEE-ecCCcEEEEECCCCceEee-ecCCC--ceEEEEECCCCCEEEEEc-C
Confidence            1110         001111222  45555553 3567899999987764433 22211  1122222 2566666654 3


Q ss_pred             CCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          263 GGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       263 ~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +..+.+|++..    ..=..+.......            .......++..++.++..+.+.+||.+  ++
T Consensus       245 ~~~i~~~~~~~----~~~~~~~~~~~~v------------~~~~~~~~~~~l~~~~~dg~i~~~~~~--~~  297 (337)
T 1gxr_A          245 SSNVEVLHVNK----PDKYQLHLHESCV------------LSLKFAYCGKWFVSTGKDNLLNAWRTP--YG  297 (337)
T ss_dssp             TSCEEEEETTS----SCEEEECCCSSCE------------EEEEECTTSSEEEEEETTSEEEEEETT--TC
T ss_pred             CCcEEEEECCC----CCeEEEcCCccce------------eEEEECCCCCEEEEecCCCcEEEEECC--CC
Confidence            44578999865    2211111100000            122233356667777777889999999  77

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.91  E-value=0.15  Score=43.64  Aligned_cols=189  Identities=8%  Similarity=0.005  Sum_probs=97.5

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      ++.+|+.+..  ...+++||+.+++...+.. +.   ... ++..++   +     +++++..  .          ..+.
T Consensus        24 ~~~l~~~d~~--~~~i~~~d~~~~~~~~~~~-~~---~~~-~i~~~~---d-----G~l~v~~--~----------~~l~   76 (297)
T 3g4e_A           24 SNSLLFVDIP--AKKVCRWDSFTKQVQRVTM-DA---PVS-SVALRQ---S-----GGYVATI--G----------TKFC   76 (297)
T ss_dssp             TTEEEEEETT--TTEEEEEETTTCCEEEEEC-SS---CEE-EEEEBT---T-----SSEEEEE--T----------TEEE
T ss_pred             CCEEEEEECC--CCEEEEEECCCCcEEEEeC-CC---ceE-EEEECC---C-----CCEEEEE--C----------CeEE
Confidence            5667776643  4679999999887544321 11   111 222221   1     5566543  1          3689


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEc----------CCceEEEEEECCCCcEEecccCCCC
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITS----------ARAYSVIGFDIESNTWRELSAPMAD  241 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg----------~~~~~i~~yd~~~~~w~~~~~~~p~  241 (373)
                      +||..+++.+.+...+..     ........+.+  +|.+|+...          .....++.+|+.. +...+..... 
T Consensus        77 ~~d~~~g~~~~~~~~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~-  149 (297)
T 3g4e_A           77 ALNWKEQSAVVLATVDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD-  149 (297)
T ss_dssp             EEETTTTEEEEEEECCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES-
T ss_pred             EEECCCCcEEEEEecCCC-----CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccc-
Confidence            999999988776543211     00011111222  588777531          1235788888763 3333311111 


Q ss_pred             CCCceeEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEE---EEeechhhhhhhcCCCCCCCceEE-EecCCEEEE
Q 046684          242 RLEFATLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCL---IEKVPIEMGMRLSGGKASWGGTRC-AAGNGAICL  315 (373)
Q Consensus       242 ~~~~~~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~---v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~i~~  315 (373)
                        ...+++.. +| .||+.... ...+.+|+++.  .+.....   +..++.....          +-.+ +..++.||+
T Consensus       150 --~pngi~~spdg~~lyv~~~~-~~~i~~~~~d~--~~G~~~~~~~~~~~~~~~~~----------p~g~~~d~~G~lwv  214 (297)
T 3g4e_A          150 --ISNGLDWSLDHKIFYYIDSL-SYSVDAFDYDL--QTGQISNRRSVYKLEKEEQI----------PDGMCIDAEGKLWV  214 (297)
T ss_dssp             --BEEEEEECTTSCEEEEEEGG-GTEEEEEEECT--TTCCEEEEEEEEECCGGGCE----------EEEEEEBTTSCEEE
T ss_pred             --cccceEEcCCCCEEEEecCC-CCcEEEEeccC--CCCcccCcEEEEECCCCCCC----------CCeeEECCCCCEEE
Confidence              11233333 45 47776543 23356666643  2344332   2222221100          2333 334678999


Q ss_pred             EEcCCccEEEEEccccCC
Q 046684          316 YREVGLGMIIWREDEDKR  333 (373)
Q Consensus       316 ~~~~~~~~~~yd~~~~~~  333 (373)
                      .....+.|.+||++  ++
T Consensus       215 a~~~~~~v~~~d~~--tG  230 (297)
T 3g4e_A          215 ACYNGGRVIRLDPV--TG  230 (297)
T ss_dssp             EEETTTEEEEECTT--TC
T ss_pred             EEcCCCEEEEEcCC--Cc
Confidence            87666679999998  87

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.89  E-value=0.39  Score=47.33  Aligned_cols=189  Identities=7%  Similarity=0.008  Sum_probs=101.2

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCccc----ceeccCCCCCCCCCC-eEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTR----QFRYLPLLNVSRTNP-AVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT  167 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~----~w~~lp~~~~~~~~~-~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~  167 (373)
                      .++.||+....  ...|+.+++...    ....+-.  .....+ ++++-...         ++||+.-..         
T Consensus       434 ~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~--~~l~~P~GLAvD~~~---------~~LY~tD~~---------  491 (791)
T 3m0c_C          434 ASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIH---------SNIYWTDSV---------  491 (791)
T ss_dssp             TTTEEEEEETT--TTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTT---------TEEEEEETT---------
T ss_pred             cCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEe--cCCCCcceeeeeecC---------CcEEEEecC---------
Confidence            47889988764  456777777642    2222111  111112 33332111         689987532         


Q ss_pred             ccceEEEEECCCCceeeecCCCccccccceeccCCceEE--ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc
Q 046684          168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC--TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF  245 (373)
Q Consensus       168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~  245 (373)
                       ...|++++.....-+.+.....     .   ....+++  .+|.|||.-......|.++++....-..+ ..-... .-
T Consensus       492 -~~~I~v~~ldG~~~~~l~~~~l-----~---~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l-v~~~l~-~P  560 (791)
T 3m0c_C          492 -LGTVSVADTKGVKRKTLFRENG-----S---KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-VTENIQ-WP  560 (791)
T ss_dssp             -TTEEEEEETTSSSEEEEEECTT-----C---CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-ECSSCS-CE
T ss_pred             -CCeEEEEeCCCCeEEEEEeCCC-----C---CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE-EeCCCC-Cc
Confidence             2478899987665444432100     0   1112233  25899999533347899999987655544 221111 11


Q ss_pred             eeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccE
Q 046684          246 ATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGM  323 (373)
Q Consensus       246 ~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  323 (373)
                      .++++-  +++||++.... ..|.+.+++   .......+.. . ..+         ..++++...++.||+.+.....|
T Consensus       561 ~GLavD~~~~~LYwaD~~~-~~I~~~d~d---G~~~~~v~~~-~-~~l---------~~P~glav~~~~lYwtD~~~~~I  625 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKL-HSISSIDVN---GGNRKTILED-E-KRL---------AHPFSLAVFEDKVFWTDIINEAI  625 (791)
T ss_dssp             EEEEEETTTTEEEEEETTT-TEEEEEETT---SCSCEEEEEC-T-TTT---------SSEEEEEEETTEEEEEETTTTEE
T ss_pred             eEEEEecCCCeEEEEeCCC-CcEEEEecC---CCceEEEecC-C-Ccc---------CCCCEEEEeCCEEEEEECCCCEE
Confidence            234443  78999986422 234444443   2233333321 1 111         12567777899999999888889


Q ss_pred             EEEEcc
Q 046684          324 IIWRED  329 (373)
Q Consensus       324 ~~yd~~  329 (373)
                      +..|..
T Consensus       626 ~~~dk~  631 (791)
T 3m0c_C          626 FSANRL  631 (791)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999976

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.88  E-value=0.066  Score=45.54  Aligned_cols=190  Identities=7%  Similarity=-0.045  Sum_probs=96.2

Q ss_pred             cEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           95 SFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        95 g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      |.+++.+..  ...+.++|+.|++  |+.-..  .....+.+.+..          ++++++.+ .           ..+
T Consensus         5 ~~~lv~~~~--~~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~p----------dG~ilvs~-~-----------~~V   58 (276)
T 3no2_A            5 QHLLVGGSG--WNKIAIINKDTKEIVWEYPLE--KGWECNSVAATK----------AGEILFSY-S-----------KGA   58 (276)
T ss_dssp             CEEEEECTT--CSEEEEEETTTTEEEEEEECC--TTCCCCEEEECT----------TSCEEEEC-B-----------SEE
T ss_pred             CcEEEeeCC--CCEEEEEECCCCeEEEEeCCC--ccCCCcCeEECC----------CCCEEEeC-C-----------CCE
Confidence            334444432  5788999998887  443211  111122333221          16677732 1           358


Q ss_pred             EEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc-EEecccCCC--C--CCCc
Q 046684          173 EMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT-WRELSAPMA--D--RLEF  245 (373)
Q Consensus       173 ~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~-w~~~~~~~p--~--~~~~  245 (373)
                      ..||+ +++  |+.-.....       . ........+|.+++........++++|++.+. |+.- ....  .  ....
T Consensus        59 ~~~d~-~G~~~W~~~~~~~~-------~-~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~-~~~~~~~~~~~~~  128 (276)
T 3no2_A           59 KMITR-DGRELWNIAAPAGC-------E-MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTE-FETGIERPHAQFR  128 (276)
T ss_dssp             EEECT-TSCEEEEEECCTTC-------E-EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEE-ECCSCSSGGGSCS
T ss_pred             EEECC-CCCEEEEEcCCCCc-------c-ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEe-ccCCCCccccccc
Confidence            89998 554  765542110       0 01112334677777643336788999986553 3321 1111  1  1111


Q ss_pred             eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEE
Q 046684          246 ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMII  325 (373)
Q Consensus       246 ~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  325 (373)
                      ......+|.+++... ....+.+|+.+   .+..|+.-.  +...            .......++.+++.+.....+..
T Consensus       129 ~v~~~~~G~~lv~~~-~~~~v~~~d~~---G~~~w~~~~--~~~~------------~~~~~~~~g~~~v~~~~~~~v~~  190 (276)
T 3no2_A          129 QINKNKKGNYLVPLF-ATSEVREIAPN---GQLLNSVKL--SGTP------------FSSAFLDNGDCLVACGDAHCFVQ  190 (276)
T ss_dssp             CCEECTTSCEEEEET-TTTEEEEECTT---SCEEEEEEC--SSCC------------CEEEECTTSCEEEECBTTSEEEE
T ss_pred             CceECCCCCEEEEec-CCCEEEEECCC---CCEEEEEEC--CCCc------------cceeEcCCCCEEEEeCCCCeEEE
Confidence            112334666665543 22334444442   233455432  1100            12333446777787766667999


Q ss_pred             EEccccCCcccEEEe
Q 046684          326 WREDEDKRKWEWVWV  340 (373)
Q Consensus       326 yd~~~~~~~~~W~~~  340 (373)
                      +|++  +++..|+.-
T Consensus       191 ~d~~--tG~~~w~~~  203 (276)
T 3no2_A          191 LNLE--SNRIVRRVN  203 (276)
T ss_dssp             ECTT--TCCEEEEEE
T ss_pred             EeCc--CCcEEEEec
Confidence            9999  897788854

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.86  E-value=0.055  Score=47.67  Aligned_cols=191  Identities=6%  Similarity=-0.020  Sum_probs=90.6

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCC-CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNV-SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      .++.+...+.   ...+.+||..+++-........ .....-.++...+        +++.++.|+.+          ..
T Consensus        92 ~d~~l~~~s~---dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--------dg~~l~sgs~d----------~~  150 (344)
T 4gqb_B           92 GERGILVASD---SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--------SGTQAVSGSKD----------IC  150 (344)
T ss_dssp             TTTEEEEEET---TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--------TSSEEEEEETT----------SC
T ss_pred             CCCeEEEEEC---CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC--------CCCEEEEEeCC----------Ce
Confidence            3565554443   5679999998876433221111 1111111222211        15566666554          35


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEE-ECC-EEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRG-MLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TL  248 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g-~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~  248 (373)
                      +.++|..+++=.  ..+..     +.. .-..+++ .++ .+++.+ ...+.|..+|+.+.+-... .......... .+
T Consensus       151 i~iwd~~~~~~~--~~~~~-----h~~-~V~~~~~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~  220 (344)
T 4gqb_B          151 IKVWDLAQQVVL--SSYRA-----HAA-QVTCVAASPHKDSVFLSC-SEDNRILLWDTRCPKPASQ-IGCSAPGYLPTSL  220 (344)
T ss_dssp             EEEEETTTTEEE--EEECC-----CSS-CEEEEEECSSCTTEEEEE-ETTSCEEEEETTSSSCEEE-CC----CCCEEEE
T ss_pred             EEEEECCCCcEE--EEEcC-----cCC-ceEEEEecCCCCCceeee-ccccccccccccccceeee-eecceeeccceee
Confidence            889998876522  11100     000 0011122 133 344443 3456788999987654332 1211111111 22


Q ss_pred             EEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE-e-cCCEEEEEEcCCccEE
Q 046684          249 VSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-A-GNGAICLYREVGLGMI  324 (373)
Q Consensus       249 ~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~  324 (373)
                      ...  ++.+++.++ .+..+.+|++..    .  +.+..+..-.         .. ...+. . .+..+++.++.++.+.
T Consensus       221 ~~~p~~~~~l~sg~-~dg~v~~wd~~~----~--~~~~~~~~h~---------~~-v~~v~fsp~g~~~lasgs~D~~i~  283 (344)
T 4gqb_B          221 AWHPQQSEVFVFGD-ENGTVSLVDTKS----T--SCVLSSAVHS---------QC-VTGLVFSPHSVPFLASLSEDCSLA  283 (344)
T ss_dssp             EECSSCTTEEEEEE-TTSEEEEEESCC--------CCEEEECCS---------SC-EEEEEECSSSSCCEEEEETTSCEE
T ss_pred             eecCCCCcceEEec-cCCcEEEEECCC----C--cEEEEEcCCC---------CC-EEEEEEccCCCeEEEEEeCCCeEE
Confidence            222  455666554 444589999865    2  2222221100         00 12222 2 3446777777777899


Q ss_pred             EEEccccCC
Q 046684          325 IWREDEDKR  333 (373)
Q Consensus       325 ~yd~~~~~~  333 (373)
                      +||.+  ++
T Consensus       284 vwd~~--~~  290 (344)
T 4gqb_B          284 VLDSS--LS  290 (344)
T ss_dssp             EECTT--CC
T ss_pred             EEECC--CC
Confidence            99999  87

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.85  E-value=0.24  Score=44.34  Aligned_cols=216  Identities=7%  Similarity=-0.005  Sum_probs=114.5

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE--eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS--SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~--~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      ..+..+++.......+.. ... ....++  ..++.||+....  ...++.+++..+..+.+...... ....+++-...
T Consensus        96 ~~I~~i~~~~~~~~~~~~-~~~-~~~gl~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~  170 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLN-NLE-NAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVH  170 (386)
T ss_dssp             SCEEEECTTSCCCEEEEC-SCS-CEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCEEEEECSSCS-CCCCEEEETTT
T ss_pred             ccceeeccCCCcEEEEec-CCC-ccEEEEEecCCCeEEEEeCC--CCcEEEEecCCCCcEEEEeCCCC-CccEEEEEeCC
Confidence            356667776655443311 111 122333  347889987753  46799999987765443221111 11223332111


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCC
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSAR  218 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~  218 (373)
                               ++||+.-...          ..+++++.....-+.+....        ......+++-  +|.|||.....
T Consensus       171 ---------g~lY~~d~~~----------~~I~~~~~dg~~~~~l~~~~--------l~~P~giavdp~~g~ly~td~~~  223 (386)
T 3v65_B          171 ---------DKLYWTDSGT----------SRIEVANLDGAHRKVLLWQS--------LEKPRAIALHPMEGTIYWTDWGN  223 (386)
T ss_dssp             ---------TEEEEEETTT----------TEEEECBTTSCSCEEEECSS--------CSCEEEEEEETTTTEEEEEECSS
T ss_pred             ---------CeEEEEcCCC----------CeEEEEeCCCCceEEeecCC--------CCCCcEEEEEcCCCeEEEeccCC
Confidence                     7788875322          36788877654433322110        0011222333  58999985333


Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcC
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSG  296 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~  296 (373)
                      ...|.++|+....-..+ ...... .-.+++.  .+++||++.... .  .|+..+.  +...=..+....  .      
T Consensus       224 ~~~I~r~~~dG~~~~~~-~~~~~~-~PnGlavd~~~~~lY~aD~~~-~--~I~~~d~--dG~~~~~~~~~~--~------  288 (386)
T 3v65_B          224 TPRIEASSMDGSGRRII-ADTHLF-WPNGLTIDYAGRRMYWVDAKH-H--VIERANL--DGSHRKAVISQG--L------  288 (386)
T ss_dssp             SCEEEEEETTSCSCEEE-ECSSCS-CEEEEEEEGGGTEEEEEETTT-T--EEEEECT--TSCSCEEEECSS--C------
T ss_pred             CCEEEEEeCCCCCcEEE-EECCCC-CeeeEEEeCCCCEEEEEECCC-C--EEEEEeC--CCCeeEEEEECC--C------
Confidence            47899999986544443 221111 1224444  378999986432 2  4554443  212112221111  1      


Q ss_pred             CCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          297 GKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                          ..+..++..++.||+.+.....|..+|..
T Consensus       289 ----~~P~giav~~~~ly~td~~~~~V~~~~~~  317 (386)
T 3v65_B          289 ----PHPFAITVFEDSLYWTDWHTKSINSANKF  317 (386)
T ss_dssp             ----SSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ----CCceEEEEECCEEEEeeCCCCeEEEEECC
Confidence                11566666889999999888889999965

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.84  E-value=0.14  Score=44.50  Aligned_cols=56  Identities=9%  Similarity=-0.218  Sum_probs=32.1

Q ss_pred             eeEEEEeCCCCCccc-cCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCccccee
Q 046684           63 LCCYVHNPVSDKWHV-LSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFR  120 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~  120 (373)
                      ..+..+|..+.+... ++............+.+| .+|+.+..  ...+.++|+.+++..
T Consensus        21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B           21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--YGDIYGIDLDTCKNT   78 (349)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT--TTEEEEEETTTTEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC--CCcEEEEeCCCCcEE
Confidence            577789988775433 222221012222233344 67776642  467999999988754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.079  Score=52.15  Aligned_cols=188  Identities=12%  Similarity=0.083  Sum_probs=96.9

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      ...+.+||..++++..+..+....... .++.......      ++.++.|+.+          ..+.+||..++.|..+
T Consensus        30 dg~I~vwd~~~~~~~~~~~l~~h~~~V-~~l~~s~~~~------~~~l~s~s~D----------g~I~vwd~~~~~~~~~   92 (753)
T 3jro_A           30 DKTIKIFEVEGETHKLIDTLTGHEGPV-WRVDWAHPKF------GTILASCSYD----------GKVLIWKEENGRWSQI   92 (753)
T ss_dssp             TTEEEEEEEETTEEEEEEEECCCSSCE-EEEEECCTTS------CSEEEEEETT----------SCEEEEEEETTEEEEE
T ss_pred             CCcEEEEecCCCCCccceeccCCcCce-EEEEecCCCC------CCEEEEEeCC----------CeEEEEECCCCccccc
Confidence            456788887755555443333222211 1222212111      3355555544          3588999988887665


Q ss_pred             cCCCccccccceeccCCceEEE--C--CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eEEEE---------
Q 046684          186 GSMPVEFAVRLTVWTPNESVCT--R--GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVSR---------  251 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~~~~~~--~--g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~~---------  251 (373)
                      .....       .......+.+  +  |.+.+.| ...+.|..||+.++.-... .......... .+...         
T Consensus        93 ~~~~~-------h~~~V~~v~~sp~~~~~~l~sg-s~dg~I~vwdl~~~~~~~~-~~~~~~~~~v~~l~~~p~~~~~~~~  163 (753)
T 3jro_A           93 AVHAV-------HSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGE  163 (753)
T ss_dssp             EEECC-------CSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCSSSCCCC-EEEECCSSCEEEEEECCCC------
T ss_pred             ccccC-------CCCCeEEEEECCCCCCCEEEEE-eCCCcEEEEEeecCCCcce-eEeecCCCceEEEEecCcccccccc
Confidence            54321       0111111222  2  5555554 4567899999887632211 1111111111 12211         


Q ss_pred             -----CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecC---CEEEEEEcCCccE
Q 046684          252 -----NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGN---GAICLYREVGLGM  323 (373)
Q Consensus       252 -----~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~  323 (373)
                           ++.+++.++. +..+.+|++..  ....+..+..+......         ........+   +.+++.++..+.+
T Consensus       164 ~~~~~d~~~l~sgs~-dg~I~iwd~~~--~~~~~~~~~~~~~h~~~---------V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          164 HNGTKESRKFVTGGA-DNLVKIWKYNS--DAQTYVLESTLEGHSDW---------VRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             ---CGGGCCEEEEET-TSCEEEEEEET--TTTEEEEEEEECCCSSC---------EEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             cccCCCCCEEEEEEC-CCeEEEEeccC--CcccceeeeeecCCCCc---------EEEEEeccCCCCCCEEEEEecCCEE
Confidence                 3555665554 44589999987  55566666555421110         012222234   6888888888889


Q ss_pred             EEEEccccCC
Q 046684          324 IIWREDEDKR  333 (373)
Q Consensus       324 ~~yd~~~~~~  333 (373)
                      .+||+.  ++
T Consensus       232 ~iwd~~--~~  239 (753)
T 3jro_A          232 IIWTQD--NE  239 (753)
T ss_dssp             EEEEES--SS
T ss_pred             EEecCC--CC
Confidence            999999  65

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.083  Score=47.25  Aligned_cols=104  Identities=8%  Similarity=-0.003  Sum_probs=54.3

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      ++.+.+.+ .....+..||..+.+.... ... ....-..+... ++  +++.+..+..+.+|++..    .  +.+..+
T Consensus       258 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~-~~~-~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~----~--~~~~~~  326 (425)
T 1r5m_A          258 TNKLLLSA-SDDGTLRIWHGGNGNSQNC-FYG-HSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ----N--TLLALS  326 (425)
T ss_dssp             TTTEEEEE-ETTSCEEEECSSSBSCSEE-ECC-CSSCEEEEEEETTT--EEEEEETTSEEEEEETTT----T--EEEEEE
T ss_pred             CCCEEEEE-cCCCEEEEEECCCCccceE-ecC-CCccEEEEEECCCC--EEEEEeCCCcEEEEECCC----C--cEeEec
Confidence            45544443 3466788999887643322 111 11112233333 45  344444455688998854    2  333333


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ......         ........++.+++.++..+.+.+||.+  +.
T Consensus       327 ~~~~~~---------i~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~  362 (425)
T 1r5m_A          327 IVDGVP---------IFAGRISQDGQKYAVAFMDGQVNVYDLK--KL  362 (425)
T ss_dssp             ECTTCC---------EEEEEECTTSSEEEEEETTSCEEEEECH--HH
T ss_pred             ccCCcc---------EEEEEEcCCCCEEEEEECCCeEEEEECC--CC
Confidence            221100         0122233356677777777789999999  66

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.74  E-value=0.055  Score=48.58  Aligned_cols=192  Identities=9%  Similarity=0.008  Sum_probs=96.7

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      +...++.++..+.   ...+.+||..+++...+-......  ...++...+   +     ++.++.|+.+          
T Consensus        99 ~~~s~~~l~~~~~---d~~v~lw~~~~~~~~~~~~~~~~~--~v~~v~~s~---~-----~~~l~~~~~d----------  155 (401)
T 4aez_A           99 LDWSNLNVVAVAL---ERNVYVWNADSGSVSALAETDEST--YVASVKWSH---D-----GSFLSVGLGN----------  155 (401)
T ss_dssp             EEECTTSEEEEEE---TTEEEEEETTTCCEEEEEECCTTC--CEEEEEECT---T-----SSEEEEEETT----------
T ss_pred             EeecCCCEEEEEC---CCeEEEeeCCCCcEeEeeecCCCC--CEEEEEECC---C-----CCEEEEECCC----------
Confidence            4444455555554   578999999998866543332111  112222222   1     5566666543          


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eE
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TL  248 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~  248 (373)
                      ..+.+||..+++-...-..       +  ......+..++.+.+.+ .....+..+|+....-...  ......... .+
T Consensus       156 g~i~iwd~~~~~~~~~~~~-------~--~~~v~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~--~~~~~~~~v~~~  223 (401)
T 4aez_A          156 GLVDIYDVESQTKLRTMAG-------H--QARVGCLSWNRHVLSSG-SRSGAIHHHDVRIANHQIG--TLQGHSSEVCGL  223 (401)
T ss_dssp             SCEEEEETTTCCEEEEECC-------C--SSCEEEEEEETTEEEEE-ETTSEEEEEETTSSSCEEE--EEECCSSCEEEE
T ss_pred             CeEEEEECcCCeEEEEecC-------C--CCceEEEEECCCEEEEE-cCCCCEEEEecccCcceee--EEcCCCCCeeEE
Confidence            3688999887653222111       0  01112233466655554 4567899999984332111  111111222 22


Q ss_pred             EEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc--CCccEEE
Q 046684          249 VSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE--VGLGMII  325 (373)
Q Consensus       249 ~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~  325 (373)
                      ... ++.+++.++. +..+.+|++..    ..  .+..+....        ...........++.+++.++  ..+.+.+
T Consensus       224 ~~~~~~~~l~s~~~-d~~v~iwd~~~----~~--~~~~~~~~~--------~~v~~~~~~p~~~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          224 AWRSDGLQLASGGN-DNVVQIWDARS----SI--PKFTKTNHN--------AAVKAVAWCPWQSNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             EECTTSSEEEEEET-TSCEEEEETTC----SS--EEEEECCCS--------SCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred             EEcCCCCEEEEEeC-CCeEEEccCCC----CC--ccEEecCCc--------ceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence            222 5666666554 34579999864    22  222221110        00112233333567777765  5678999


Q ss_pred             EEccccCC
Q 046684          326 WREDEDKR  333 (373)
Q Consensus       326 yd~~~~~~  333 (373)
                      ||..  ++
T Consensus       289 ~d~~--~~  294 (401)
T 4aez_A          289 WNAA--TG  294 (401)
T ss_dssp             EETT--TC
T ss_pred             EECC--CC
Confidence            9998  76

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.74  E-value=0.035  Score=48.84  Aligned_cols=200  Identities=11%  Similarity=0.025  Sum_probs=94.8

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|.+++.++.  ...+.+||..++++..+..+............. +.        ++.++.|+.+          ..+.
T Consensus        19 ~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~--------~~~l~~~~~d----------g~i~   77 (372)
T 1k8k_C           19 DRTQIAICPN--NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PD--------SNRIVTCGTD----------RNAY   77 (372)
T ss_dssp             TSSEEEEECS--SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE-TT--------TTEEEEEETT----------SCEE
T ss_pred             CCCEEEEEeC--CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEe-CC--------CCEEEEEcCC----------CeEE
Confidence            4444444432  567899999888765544443222222222222 11        4455555543          3588


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCc-EEecccC-CCCCCCceeEEE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNT-WRELSAP-MADRLEFATLVS  250 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~-w~~~~~~-~p~~~~~~~~~~  250 (373)
                      +||..++++........      .......+.+. ++...+.++ ....+..||+.+++ |...... .+....-..+..
T Consensus        78 vwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           78 VWTLKGRTWKPTLVILR------INRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             EEEEETTEEEEEEECCC------CSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             EEECCCCeeeeeEEeec------CCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence            89988887655433210      00001111221 455555543 34567777776654 3222111 111111122222


Q ss_pred             E-CCEEEEEEeecCCceEEEEeecCC-----CC-------CCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEE
Q 046684          251 R-NQKLTLIGGTCGGDACVWELSEGG-----DD-------DIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR  317 (373)
Q Consensus       251 ~-~g~l~~~gg~~~~~~~i~~~~~~~-----~~-------~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  317 (373)
                      . ++.+++.++ .+..+.+|++....     ..       ..-..+..+....         ......+...++..++.+
T Consensus       151 ~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~  220 (372)
T 1k8k_C          151 HPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---------GWVHGVCFSANGSRVAWV  220 (372)
T ss_dssp             CTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---------SCEEEEEECSSSSEEEEE
T ss_pred             cCCCCEEEEEc-CCCCEEEEEcccccccccccccccccccchhhheEecCCCC---------CeEEEEEECCCCCEEEEE
Confidence            2 566666554 34457999964200     00       1122333332110         000122222355566667


Q ss_pred             cCCccEEEEEccccCC
Q 046684          318 EVGLGMIIWREDEDKR  333 (373)
Q Consensus       318 ~~~~~~~~yd~~~~~~  333 (373)
                      +..+.+.+||.+  +.
T Consensus       221 ~~d~~i~i~d~~--~~  234 (372)
T 1k8k_C          221 SHDSTVCLADAD--KK  234 (372)
T ss_dssp             ETTTEEEEEEGG--GT
T ss_pred             eCCCEEEEEECC--CC
Confidence            777789999998  76

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.70  E-value=0.23  Score=41.94  Aligned_cols=219  Identities=11%  Similarity=0.072  Sum_probs=107.3

Q ss_pred             eeEEEEeCCCCCccccCCCC----CCCCceeEEe--eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEE
Q 046684           63 LCCYVHNPVSDKWHVLSLDF----LPYPVRPVSS--IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGI  136 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~----~~~~~~~~~~--~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~  136 (373)
                      ..+..||+.......+....    .......++.  .+|.+|+.+.. ....+.+||+..+....+....  ...+. .+
T Consensus        51 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-~~~~i~~~d~~g~~~~~~~~~~--~~~~~-~i  126 (286)
T 1q7f_A           51 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-PTHQIQIYNQYGQFVRKFGATI--LQHPR-GV  126 (286)
T ss_dssp             TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-GGCEEEEECTTSCEEEEECTTT--CSCEE-EE
T ss_pred             CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-CCCEEEEECCCCcEEEEecCcc--CCCce-EE
Confidence            45677887754333332111    0011223443  57888887631 1367899996544433332211  11111 22


Q ss_pred             EEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEE
Q 046684          137 VMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWI  214 (373)
Q Consensus       137 ~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~  214 (373)
                      ..++   +     +++|+.....          ..+.+||...+.-+.+....        .......+.+  +|.+|+.
T Consensus       127 ~~~~---~-----g~l~v~~~~~----------~~i~~~~~~g~~~~~~~~~~--------~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          127 TVDN---K-----GRIIVVECKV----------MRVIIFDQNGNVLHKFGCSK--------HLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             EECT---T-----SCEEEEETTT----------TEEEEECTTSCEEEEEECTT--------TCSSEEEEEECSSSEEEEE
T ss_pred             EEeC---C-----CCEEEEECCC----------CEEEEEcCCCCEEEEeCCCC--------ccCCcEEEEECCCCCEEEE
Confidence            2221   1     6688865322          46888987654433332110        0011112333  4888887


Q ss_pred             EcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhh
Q 046684          215 TSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMR  293 (373)
Q Consensus       215 gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~  293 (373)
                      . .....|..||+..+....+. .......-.+++. -+|.||+.....+..+.+|+.+.    ..-..+.. ....   
T Consensus       181 ~-~~~~~i~~~~~~g~~~~~~~-~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g----~~~~~~~~-~~~~---  250 (286)
T 1q7f_A          181 D-NRAHCVKVFNYEGQYLRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----QLISALES-KVKH---  250 (286)
T ss_dssp             E-GGGTEEEEEETTCCEEEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----CEEEEEEE-SSCC---
T ss_pred             E-CCCCEEEEEcCCCCEEEEEc-cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC----CEEEEEcc-cCCC---
Confidence            4 34678999998766555551 1111111123333 36788888754332567776432    22122211 1100   


Q ss_pred             hcCCCCCCCceEE-EecCCEEEEEEcCCccEEEEEcc
Q 046684          294 LSGGKASWGGTRC-AAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       294 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                             ..+..+ +..++.+|+.+ ..+.+.+|+..
T Consensus       251 -------~~~~~i~~~~~g~l~vs~-~~~~v~v~~~~  279 (286)
T 1q7f_A          251 -------AQCFDVALMDDGSVVLAS-KDYRLYIYRYV  279 (286)
T ss_dssp             -------SCEEEEEEETTTEEEEEE-TTTEEEEEECS
T ss_pred             -------CcceeEEECCCCcEEEEC-CCCeEEEEEcc
Confidence                   002233 33477899885 45678889886

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.68  E-value=0.16  Score=44.98  Aligned_cols=184  Identities=7%  Similarity=-0.068  Sum_probs=92.5

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      ...+.+||..+++....-............... +.       +.++++.++.+          ..+.+||..++..+.+
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-~~-------~~~~l~s~~~d----------~~i~iwd~~~~~~~~~  156 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN-QF-------NTNQLFVSSIR----------GATTLRDFSGSVIQVF  156 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE-TT-------EEEEEEEEETT----------TEEEEEETTSCEEEEE
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCceeEEEeC-CC-------CCCEEEEEeCC----------CEEEEEECCCCceEEE
Confidence            457889999887765433221111111122221 10       15666666554          4688999987666555


Q ss_pred             cCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee-EEEE-CCE-EEEEEee
Q 046684          186 GSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT-LVSR-NQK-LTLIGGT  261 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~-~~~~-~g~-l~~~gg~  261 (373)
                      .....      .......+++. ++.+.+. +.....|..||+..+....+ .   ....... +... ++. +++.++ 
T Consensus       157 ~~~~~------~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~l~s~~-  224 (383)
T 3ei3_B          157 AKTDS------WDYWYCCVDVSVSRQMLAT-GDSTGRLLLLGLDGHEIFKE-K---LHKAKVTHAEFNPRCDWLMATSS-  224 (383)
T ss_dssp             ECCCC------SSCCEEEEEEETTTTEEEE-EETTSEEEEEETTSCEEEEE-E---CSSSCEEEEEECSSCTTEEEEEE-
T ss_pred             eccCC------CCCCeEEEEECCCCCEEEE-ECCCCCEEEEECCCCEEEEe-c---cCCCcEEEEEECCCCCCEEEEEe-
Confidence            43210      00001112222 4555555 34567899999965544444 1   1112222 2222 444 555554 


Q ss_pred             cCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCCccEEEEEccccCC
Q 046684          262 CGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       262 ~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+..+.+|++..  ....-..+..+.....          ........ ++..++.++..+.+.+||++  +.
T Consensus       225 ~d~~i~iwd~~~--~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~~l~~~~~d~~i~iwd~~--~~  283 (383)
T 3ei3_B          225 VDATVKLWDLRN--IKDKNSYIAEMPHEKP----------VNAAYFNPTDSTKLLTTDQRNEIRVYSSY--DW  283 (383)
T ss_dssp             TTSEEEEEEGGG--CCSTTCEEEEEECSSC----------EEEEEECTTTSCEEEEEESSSEEEEEETT--BT
T ss_pred             CCCEEEEEeCCC--CCcccceEEEecCCCc----------eEEEEEcCCCCCEEEEEcCCCcEEEEECC--CC
Confidence            444589999976  2222223333321110          01222223 56677777777889999998  65

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.67  E-value=0.28  Score=42.59  Aligned_cols=232  Identities=9%  Similarity=-0.018  Sum_probs=113.7

Q ss_pred             eEEEEeCCCCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCccc--ceeccCCCC------CCCCCCeE
Q 046684           64 CCYVHNPVSDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTR--QFRYLPLLN------VSRTNPAV  134 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~--~w~~lp~~~------~~~~~~~~  134 (373)
                      .+..+|+.+.+.... ...............+|.+|+.+..  ...+.++|+..+  .-..+....      .....+..
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~--~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA--LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT--TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC--CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence            577788876654332 1111112222233347778887753  467999998765  223332111      11112222


Q ss_pred             EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCcc-ccccceeccCCceEEE-C-CEE
Q 046684          135 GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVE-FAVRLTVWTPNESVCT-R-GML  211 (373)
Q Consensus       135 ~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-~~~~~~~~~~~~~~~~-~-g~l  211 (373)
                      .++. +.       ++++|+..+..         ...+.+||.....-+.+...... ...+........+++- + |.+
T Consensus       148 ia~~-~~-------~g~lyv~d~~~---------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l  210 (329)
T 3fvz_A          148 VAVE-PS-------TGAVFVSDGYC---------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL  210 (329)
T ss_dssp             EEEC-TT-------TCCEEEEECSS---------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE
T ss_pred             EEEe-CC-------CCeEEEEeCCC---------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE
Confidence            2222 10       17799887422         24688898644333322211000 0000011112223332 3 899


Q ss_pred             EEEEcCCceEEEEEECCCCcEEecccCCC-CCCCceeEEEECCEEEEEEeec------CCceEEEEeecCCCCCCeEEEE
Q 046684          212 YWITSARAYSVIGFDIESNTWRELSAPMA-DRLEFATLVSRNQKLTLIGGTC------GGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       212 y~~gg~~~~~i~~yd~~~~~w~~~~~~~p-~~~~~~~~~~~~g~l~~~gg~~------~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      |+.. .....|..||+++++.... ...+ ....-..++...|.++...|..      ...+.+|++..    .+...  
T Consensus       211 ~v~d-~~~~~I~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~----g~~~~--  282 (329)
T 3fvz_A          211 CVAD-RENGRIQCFKTDTKEFVRE-IKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS----GEIID--  282 (329)
T ss_dssp             EEEE-TTTTEEEEEETTTCCEEEE-ECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT----CCEEE--
T ss_pred             EEEE-CCCCEEEEEECCCCcEEEE-EeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC----CeEEE--
Confidence            9884 4567899999997666543 2222 1112223333346666655431      11266777654    43332  


Q ss_pred             eechhhhhhhcCCCCCCCceEEEe-cCCEEEEEEcCCccEEEEEcc
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAA-GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .+.....       ....+..++. .++.||+.+...+.|.+|+++
T Consensus       283 ~~~~~~~-------~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          283 VFKPVRK-------HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EECCSSS-------CCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEcCCCC-------ccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            2221000       0011344444 366999999888899999997

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.66  E-value=0.048  Score=51.42  Aligned_cols=193  Identities=6%  Similarity=0.036  Sum_probs=97.3

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ..+|.+|+.+..  ...+.++|..|++....  ++.... .....+ .+.+       ..+|+.+ .+          ..
T Consensus       146 ~p~~~~~vs~~~--d~~V~v~D~~t~~~~~~--i~~g~~-~~~v~~-spdg-------~~l~v~~-~d----------~~  201 (543)
T 1nir_A          146 DLPNLFSVTLRD--AGQIALVDGDSKKIVKV--IDTGYA-VHISRM-SASG-------RYLLVIG-RD----------AR  201 (543)
T ss_dssp             CGGGEEEEEEGG--GTEEEEEETTTCCEEEE--EECSTT-EEEEEE-CTTS-------CEEEEEE-TT----------SE
T ss_pred             CCCCEEEEEEcC--CCeEEEEECCCceEEEE--EecCcc-cceEEE-CCCC-------CEEEEEC-CC----------Ce
Confidence            447888887654  46789999999875431  111111 122212 2211       4566654 21          46


Q ss_pred             EEEEEC--CCCceeeecCCCccccccceeccCCceEEE-----CCEEEEEEcCCceEEEEEECCCCcEEecccCCC----
Q 046684          172 VEMYDS--RHDAWQIIGSMPVEFAVRLTVWTPNESVCT-----RGMLYWITSARAYSVIGFDIESNTWRELSAPMA----  240 (373)
Q Consensus       172 ~~~yd~--~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-----~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p----  240 (373)
                      +.+||.  .+.+  .+..++..       .....+++-     +|+..+++......+..+|..+.+-... .+..    
T Consensus       202 V~v~D~~~~t~~--~~~~i~~g-------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~-i~~~g~~~  271 (543)
T 1nir_A          202 IDMIDLWAKEPT--KVAEIKIG-------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI-VSTRGMTV  271 (543)
T ss_dssp             EEEEETTSSSCE--EEEEEECC-------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE-EECCEECS
T ss_pred             EEEEECcCCCCc--EEEEEecC-------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee-ecccCccc
Confidence            899999  5543  22222111       111122332     5554334344467788999887754333 2221    


Q ss_pred             -------CCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCE
Q 046684          241 -------DRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGA  312 (373)
Q Consensus       241 -------~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  312 (373)
                             ..+. ..++. .++..+++.......+.+|++.+    .+-..+..++.....         ....+...+..
T Consensus       272 ~~~~~~~~~~v-~~i~~s~~~~~~~vs~~~~g~i~vvd~~~----~~~l~~~~i~~~~~~---------~~~~~spdg~~  337 (543)
T 1nir_A          272 DTQTYHPEPRV-AAIIASHEHPEFIVNVKETGKVLLVNYKD----IDNLTVTSIGAAPFL---------HDGGWDSSHRY  337 (543)
T ss_dssp             SSCCEESCCCE-EEEEECSSSSEEEEEETTTTEEEEEECTT----SSSCEEEEEECCSSC---------CCEEECTTSCE
T ss_pred             CccccccCCce-EEEEECCCCCEEEEEECCCCeEEEEEecC----CCcceeEEeccCcCc---------cCceECCCCCE
Confidence                   1111 12222 23444555544444567777754    222223334322211         12333334556


Q ss_pred             EEEEEcCCccEEEEEccccCCc
Q 046684          313 ICLYREVGLGMIIWREDEDKRK  334 (373)
Q Consensus       313 i~~~~~~~~~~~~yd~~~~~~~  334 (373)
                      +|+.+..++.+.++|.+  +++
T Consensus       338 l~va~~~~~~v~v~D~~--tg~  357 (543)
T 1nir_A          338 FMTAANNSNKVAVIDSK--DRR  357 (543)
T ss_dssp             EEEEEGGGTEEEEEETT--TTE
T ss_pred             EEEEecCCCeEEEEECC--CCe
Confidence            77777667789999999  883

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.24  Score=43.06  Aligned_cols=119  Identities=13%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CC--EEEEEEeecCCceEEEEeecC--CCCCCeEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQ--KLTLIGGTCGGDACVWELSEG--GDDDIWCL  282 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g--~l~~~gg~~~~~~~i~~~~~~--~~~~~W~~  282 (373)
                      ++.+.+.+ .....|..+|..++.|..+ ..+..+......+.. .+  ..+++.+..+..+.+|++...  .....|..
T Consensus       164 ~~~~l~s~-s~D~~i~iW~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          164 SEALLASS-SYDDTVRIWKDYDDDWECV-AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             SSSEEEEE-ETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEE-cCCCeEEEEECCCCCeeEE-EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence            45555443 4456788888887777655 333332222222222 21  234444445556899998651  01234666


Q ss_pred             EEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEec
Q 046684          283 IEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       283 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~  341 (373)
                      +..++.....         ....+....+.+++.++..+.+.+||..  ++  +|+.+.
T Consensus       242 ~~~~~~~h~~---------~v~~v~~s~~~~l~s~~~dg~v~iw~~~--~~--~~~~~~  287 (330)
T 2hes_X          242 EAILPDVHKR---------QVYNVAWGFNGLIASVGADGVLAVYEEV--DG--EWKVFA  287 (330)
T ss_dssp             EEECCSCCSS---------CEEEEEECTTSCEEEEETTSCEEEEEEE--TT--EEEEEE
T ss_pred             eeeccccccc---------ceEEEEEcCCCEEEEEeCCCEEEEEEcC--CC--ceEEEe
Confidence            5554421100         0123333344466667777789999999  88  886543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.63  E-value=0.23  Score=42.68  Aligned_cols=191  Identities=9%  Similarity=0.020  Sum_probs=93.8

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceec-cCCCCC-CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccc
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNV-SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES  170 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~-~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~  170 (373)
                      .+|.+++.++   ...+.+||..+++... +..+.. ........+...+        +++.++.|+.+          .
T Consensus        61 ~~~~~l~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d----------~  119 (337)
T 1gxr_A           61 NPTRHVYTGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--------DGCTLIVGGEA----------S  119 (337)
T ss_dssp             SSSSEEEEEC---BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--------TSSEEEEEESS----------S
T ss_pred             cCCcEEEEcC---CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--------CCCEEEEEcCC----------C
Confidence            3555555555   4788999988765322 221111 1111122222222        14455556543          4


Q ss_pred             eEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eE
Q 046684          171 MVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TL  248 (373)
Q Consensus       171 ~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~  248 (373)
                      .+.+||..+++......+..      ........++. ++...+.+ .....+..||+.+++.... ...  ..... .+
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~-~~~--~~~~i~~~  189 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTS------SAPACYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVRQ-FQG--HTDGASCI  189 (337)
T ss_dssp             EEEEEECCCC--EEEEEEEC------SSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEE-ECC--CSSCEEEE
T ss_pred             cEEEEECCCCCcceeeeccc------CCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceeee-eec--ccCceEEE
Confidence            68999998877543332210      00000111222 45555553 3456799999988765433 221  11122 22


Q ss_pred             EEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684          249 VSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       249 ~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd  327 (373)
                      ... ++..++.++ .+..+.+|++..    .  +.+.........          .......++..++++...+.+.+||
T Consensus       190 ~~~~~~~~l~~~~-~dg~i~~~d~~~----~--~~~~~~~~~~~v----------~~~~~s~~~~~l~~~~~~~~i~~~~  252 (337)
T 1gxr_A          190 DISNDGTKLWTGG-LDNTVRSWDLRE----G--RQLQQHDFTSQI----------FSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             EECTTSSEEEEEE-TTSEEEEEETTT----T--EEEEEEECSSCE----------EEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EECCCCCEEEEEe-cCCcEEEEECCC----C--ceEeeecCCCce----------EEEEECCCCCEEEEEcCCCcEEEEE
Confidence            222 566666554 344578998864    3  233332211100          1222334566666777777899999


Q ss_pred             ccccCC
Q 046684          328 EDEDKR  333 (373)
Q Consensus       328 ~~~~~~  333 (373)
                      .+  ++
T Consensus       253 ~~--~~  256 (337)
T 1gxr_A          253 VN--KP  256 (337)
T ss_dssp             TT--SS
T ss_pred             CC--CC
Confidence            98  76

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.61  E-value=0.047  Score=49.66  Aligned_cols=185  Identities=11%  Similarity=0.089  Sum_probs=93.8

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|..++.|+.  ...+.+||..+++-...  +.....  .+..+..    +     +++++.|+.+          ..+.
T Consensus       142 d~~~l~~g~~--dg~i~iwd~~~~~~~~~--~~~h~~--~v~~l~~----~-----~~~l~sg~~d----------g~i~  196 (435)
T 1p22_A          142 DDQKIVSGLR--DNTIKIWDKNTLECKRI--LTGHTG--SVLCLQY----D-----ERVIITGSSD----------STVR  196 (435)
T ss_dssp             CSSEEEEEES--SSCEEEEESSSCCEEEE--ECCCSS--CEEEEEC----C-----SSEEEEEETT----------SCEE
T ss_pred             CCCEEEEEeC--CCeEEEEeCCCCeEEEE--EcCCCC--cEEEEEE----C-----CCEEEEEcCC----------CeEE
Confidence            4444444432  56799999988764332  111111  1222221    1     5566666654          4689


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECC
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQ  253 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g  253 (373)
                      +||..+++-...-...         ......+..++...+.+ ...+.|..||+.+.+-................+..++
T Consensus       197 vwd~~~~~~~~~~~~h---------~~~v~~l~~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  266 (435)
T 1p22_A          197 VWDVNTGEMLNTLIHH---------CEAVLHLRFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD  266 (435)
T ss_dssp             EEESSSCCEEEEECCC---------CSCEEEEECCTTEEEEE-ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             EEECCCCcEEEEEcCC---------CCcEEEEEEcCCEEEEe-eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC
Confidence            9998877532211110         01111223344444443 4567889999987643211011122222233344466


Q ss_pred             EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          254 KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       254 ~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ..++.++. +..+.+|++..    .  +.+..+.....           ...+...++..++.++..+.+.+||.+  ++
T Consensus       267 ~~l~s~~~-dg~i~vwd~~~----~--~~~~~~~~~~~-----------~v~~~~~~~~~l~~g~~dg~i~iwd~~--~~  326 (435)
T 1p22_A          267 KYIVSASG-DRTIKVWNTST----C--EFVRTLNGHKR-----------GIACLQYRDRLVVSGSSDNTIRLWDIE--CG  326 (435)
T ss_dssp             TEEEEEET-TSEEEEEETTT----C--CEEEEEECCSS-----------CEEEEEEETTEEEEEETTSCEEEEETT--TC
T ss_pred             CEEEEEeC-CCeEEEEECCc----C--cEEEEEcCCCC-----------cEEEEEeCCCEEEEEeCCCeEEEEECC--CC
Confidence            66666543 44578999865    2  23333321110           233334455666777777789999998  76

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.57  E-value=0.32  Score=42.09  Aligned_cols=216  Identities=7%  Similarity=-0.017  Sum_probs=112.6

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEe--eCcEEEEeeCCCCceEEEEEcCcc----cceec-cC-CCCCCCCCCeE
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSS--IGSFLLLRPINSTILQLVLCNPFT----RQFRY-LP-LLNVSRTNPAV  134 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~--~~g~l~~~gg~~~~~~~~v~np~t----~~w~~-lp-~~~~~~~~~~~  134 (373)
                      ..+...|..+.....+- +...+ ...++.  .++.||+....  ...+.++++.+    ..... ++ .+..   ...+
T Consensus        10 ~~I~~i~~~~~~~~~~~-~~~~~-p~g~~~d~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~---p~gl   82 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLI-PNLRN-VVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQA---PDGL   82 (316)
T ss_dssp             SSEEEEETTSCCCEEEE-CSCSS-EEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSC---CCEE
T ss_pred             CeEEEEECCCcceEehh-cCCCc-eEEEEEEeCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEeCCCCC---cCEE
Confidence            34666787776554431 11111 223333  37889998763  46889999876    22222 21 1111   1233


Q ss_pred             EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEE
Q 046684          135 GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLY  212 (373)
Q Consensus       135 ~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly  212 (373)
                      ++-...         ++||+.-..          ...+++++.....-+.+.....     .   ....+++-  +|.||
T Consensus        83 avd~~~---------~~ly~~d~~----------~~~I~~~~~~g~~~~~~~~~~~-----~---~P~~iavdp~~g~ly  135 (316)
T 1ijq_A           83 AVDWIH---------SNIYWTDSV----------LGTVSVADTKGVKRKTLFRENG-----S---KPRAIVVDPVHGFMY  135 (316)
T ss_dssp             EEETTT---------TEEEEEETT----------TTEEEEEETTSSSEEEEEECTT-----C---CEEEEEEETTTTEEE
T ss_pred             EEeecC---------CeEEEEECC----------CCEEEEEeCCCCceEEEEECCC-----C---CcceEEeCCCCCEEE
Confidence            332111         778887432          2468888886544332221100     0   11223442  68999


Q ss_pred             EEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684          213 WITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       213 ~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~  290 (373)
                      |........|..+++....-+.+ ..... ..-.+++.-  +++||+..... ..+..++++.    ..=+.+.......
T Consensus       136 ~~d~~~~~~I~~~~~dG~~~~~~-~~~~~-~~P~gla~d~~~~~lY~~D~~~-~~I~~~d~dg----~~~~~~~~~~~~~  208 (316)
T 1ijq_A          136 WTDWGTPAKIKKGGLNGVDIYSL-VTENI-QWPNGITLDLLSGRLYWVDSKL-HSISSIDVNG----GNRKTILEDEKRL  208 (316)
T ss_dssp             EEECSSSCEEEEEETTSCCEEEE-ECSSC-SCEEEEEEETTTTEEEEEETTT-TEEEEEETTS----CSCEEEEECTTTT
T ss_pred             EEccCCCCeEEEEcCCCCCeEEE-EECCC-CCceEEEEeccCCEEEEEECCC-CeEEEEecCC----CceEEEeecCCcc
Confidence            98533347899999976554444 22111 112244443  68999986432 2345555532    2222332221111


Q ss_pred             hhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          291 GMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                                ..+..++..++.||+.......|..+|+.
T Consensus       209 ----------~~P~giav~~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          209 ----------AHPFSLAVFEDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             ----------SSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ----------CCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence                      11566666789999999888889999986

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.54  E-value=0.38  Score=42.55  Aligned_cols=113  Identities=12%  Similarity=-0.005  Sum_probs=56.2

Q ss_pred             EEEEcCCceEEEEEECCCCcEEecccCC-CCC---CCceeEEEE--CCEEEEEEeecC--CceEEEEeecCCCCCCeEEE
Q 046684          212 YWITSARAYSVIGFDIESNTWRELSAPM-ADR---LEFATLVSR--NQKLTLIGGTCG--GDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       212 y~~gg~~~~~i~~yd~~~~~w~~~~~~~-p~~---~~~~~~~~~--~g~l~~~gg~~~--~~~~i~~~~~~~~~~~W~~v  283 (373)
                      +++.+.....+..||+.+.+-... ... ...   ......+..  ++.++++++.++  ..+.+|++..    .  +.+
T Consensus       199 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~----~--~~~  271 (397)
T 1sq9_A          199 LIATGFNNGTVQISELSTLRPLYN-FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF----G--ERI  271 (397)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEE-EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT----C--CEE
T ss_pred             eEEEEeCCCcEEEEECCCCceeEE-EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC----C--ccc
Confidence            444456678899999987754333 121 001   122222222  566666665542  3478998864    2  333


Q ss_pred             Eeechhhhh--hhcCC--CCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          284 EKVPIEMGM--RLSGG--KASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       284 ~~~p~~~~~--~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ..+......  .....  ........+...++..++.++..+.+.+||.+  +.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~  323 (397)
T 1sq9_A          272 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK--TK  323 (397)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT--TT
T ss_pred             ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC--CC
Confidence            333321000  00000  00000122222356677777777889999999  76

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.53  E-value=0.19  Score=45.67  Aligned_cols=185  Identities=9%  Similarity=0.033  Sum_probs=93.3

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      +...+++++..+.   ...+.+||..+++-...  +.............           +.+++.|+.+          
T Consensus       125 ~~~~g~~l~sg~~---dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~-----------~~~l~s~~~d----------  178 (445)
T 2ovr_B          125 LQFCGNRIVSGSD---DNTLKVWSAVTGKCLRT--LVGHTGGVWSSQMR-----------DNIIISGSTD----------  178 (445)
T ss_dssp             EEEETTEEEEEET---TSCEEEEETTTCCEEEE--CCCCSSCEEEEEEE-----------TTEEEEEETT----------
T ss_pred             EEEcCCEEEEEEC---CCcEEEEECCCCcEEEE--EcCCCCCEEEEEec-----------CCEEEEEeCC----------
Confidence            4445665555554   57899999988764321  11111111222222           3355556554          


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV  249 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~  249 (373)
                      ..+.+||..+++-...-..       +  ......+..++...+.+ .....+..||+.+++-... ..  ........+
T Consensus       179 g~i~vwd~~~~~~~~~~~~-------h--~~~v~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~-~~--~~~~~v~~~  245 (445)
T 2ovr_B          179 RTLKVWNAETGECIHTLYG-------H--TSTVRCMHLHEKRVVSG-SRDATLRVWDIETGQCLHV-LM--GHVAAVRCV  245 (445)
T ss_dssp             SCEEEEETTTTEEEEEECC-------C--SSCEEEEEEETTEEEEE-ETTSEEEEEESSSCCEEEE-EE--CCSSCEEEE
T ss_pred             CeEEEEECCcCcEEEEECC-------C--CCcEEEEEecCCEEEEE-eCCCEEEEEECCCCcEEEE-Ec--CCcccEEEE
Confidence            3688999887653221111       0  01111233344444443 4567899999987754332 11  122223334


Q ss_pred             EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          250 SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       250 ~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ..++..++.++. +..+.+|++..    .  +.+..+.....           ...+...++..++.++..+.+.+||++
T Consensus       246 ~~~~~~l~~~~~-dg~i~iwd~~~----~--~~~~~~~~~~~-----------~v~~~~~~~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          246 QYDGRRVVSGAY-DFMVKVWDPET----E--TCLHTLQGHTN-----------RVYSLQFDGIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             EECSSCEEEEET-TSCEEEEEGGG----T--EEEEEECCCSS-----------CEEEEEECSSEEEEEETTSCEEEEETT
T ss_pred             EECCCEEEEEcC-CCEEEEEECCC----C--cEeEEecCCCC-----------ceEEEEECCCEEEEEeCCCeEEEEECC
Confidence            447777666654 34578998865    2  33333331110           122222245555556566667777777


Q ss_pred             ccCC
Q 046684          330 EDKR  333 (373)
Q Consensus       330 ~~~~  333 (373)
                        ++
T Consensus       308 --~~  309 (445)
T 2ovr_B          308 --TG  309 (445)
T ss_dssp             --TC
T ss_pred             --CC
Confidence              65

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.43  E-value=0.41  Score=46.41  Aligned_cols=116  Identities=13%  Similarity=0.145  Sum_probs=70.9

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCC--------CCCCeEEEEEcCCCCCCCCCceEEEEEeccC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVS--------RTNPAVGIVMEGPAQHGPFPNFRIYVAGGMS  159 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~  159 (373)
                      -...+|.||+...   ...++.+|+.|++  |+.-+..+..        ......++.+           ++||+.... 
T Consensus        73 P~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------~~v~v~~~d-  137 (677)
T 1kb0_A           73 PVVVDGIMYVSAS---WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK-----------GKVYVGAWD-  137 (677)
T ss_dssp             CEEETTEEEEECG---GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET-----------TEEEEECTT-
T ss_pred             CEEECCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEEC-----------CEEEEEcCC-
Confidence            3457999999876   4678999999876  7653332210        1112233332           778775322 


Q ss_pred             CCCCCCCcccceEEEEECCCCc--eeeecC-CCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCCc-
Q 046684          160 DEPRGGATYESMVEMYDSRHDA--WQIIGS-MPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESNT-  231 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~~-  231 (373)
                                ..+..+|.++++  |+.-.. -+.     .........++.++.+|+....    ....|.+||.++++ 
T Consensus       138 ----------g~l~alD~~tG~~~W~~~~~~~~~-----~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~  202 (677)
T 1kb0_A          138 ----------GRLIALDAATGKEVWHQNTFEGQK-----GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGER  202 (677)
T ss_dssp             ----------SEEEEEETTTCCEEEEEETTTTCC-----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             ----------CEEEEEECCCCCEEeeecCCcCcC-----cCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcE
Confidence                      368999998876  876543 110     0111223446778999886422    25789999998874 


Q ss_pred             -EEec
Q 046684          232 -WREL  235 (373)
Q Consensus       232 -w~~~  235 (373)
                       |+.-
T Consensus       203 ~W~~~  207 (677)
T 1kb0_A          203 KWRWF  207 (677)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence             7654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.43  E-value=0.12  Score=43.10  Aligned_cols=188  Identities=9%  Similarity=0.010  Sum_probs=93.4

Q ss_pred             eeCcEEEE-eeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccc
Q 046684           92 SIGSFLLL-RPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES  170 (373)
Q Consensus        92 ~~~g~l~~-~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~  170 (373)
                      ..+|.+|+ ....  ...+.++|+.+.....++.... .....+++ . +   +     +++|+... .          .
T Consensus        32 ~~~g~l~v~~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~-~-~---~-----g~l~v~~~-~----------~   87 (270)
T 1rwi_B           32 DSAGNVYVTSEGM--YGRVVKLATGSTGTTVLPFNGL-YQPQGLAV-D-G---A-----GTVYVTDF-N----------N   87 (270)
T ss_dssp             CTTCCEEEEECSS--SCEEEEECC-----EECCCCSC-CSCCCEEE-C-T---T-----CCEEEEET-T----------T
T ss_pred             CCCCCEEEEccCC--CCcEEEecCCCcccceEeeCCc-CCcceeEE-C-C---C-----CCEEEEcC-C----------C
Confidence            34677888 5332  4678999998876554432211 11122222 2 1   1     56888653 2          3


Q ss_pred             eEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684          171 MVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV  249 (373)
Q Consensus       171 ~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~  249 (373)
                      .+.+||..++.-+......        .......++- +|.+|+.. .....|..||..+...... .. .....-..++
T Consensus        88 ~i~~~d~~~~~~~~~~~~~--------~~~p~~i~~~~~g~l~v~~-~~~~~i~~~~~~~~~~~~~-~~-~~~~~p~~i~  156 (270)
T 1rwi_B           88 RVVTLAAGSNNQTVLPFDG--------LNYPEGLAVDTQGAVYVAD-RGNNRVVKLAAGSKTQTVL-PF-TGLNDPDGVA  156 (270)
T ss_dssp             EEEEECTTCSCCEECCCCS--------CSSEEEEEECTTCCEEEEE-GGGTEEEEECTTCCSCEEC-CC-CSCCSCCCEE
T ss_pred             EEEEEeCCCceEeeeecCC--------cCCCcceEECCCCCEEEEE-CCCCEEEEEECCCceeEee-cc-ccCCCceeEE
Confidence            6888998776544332110        0011122222 57888874 3356788898766554333 11 1111112344


Q ss_pred             EE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCCccEEEEE
Q 046684          250 SR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVGLGMIIWR  327 (373)
Q Consensus       250 ~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~yd  327 (373)
                      .. +|+||+..... ..+.+|+++.    ..-..  ......          ..+..++.. ++.||+.....+.+..||
T Consensus       157 ~~~~g~l~v~~~~~-~~i~~~~~~~----~~~~~--~~~~~~----------~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          157 VDNSGNVYVTDTDN-NRVVKLEAES----NNQVV--LPFTDI----------TAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             ECTTCCEEEEEGGG-TEEEEECTTT----CCEEE--CCCSSC----------CSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             EeCCCCEEEEECCC-CEEEEEecCC----CceEe--ecccCC----------CCceEEEECCCCCEEEEECCCCcEEEEc
Confidence            33 67888876432 2345555432    22111  111000          013344443 568999887777899999


Q ss_pred             ccccCC
Q 046684          328 EDEDKR  333 (373)
Q Consensus       328 ~~~~~~  333 (373)
                      ++  .+
T Consensus       220 ~~--~~  223 (270)
T 1rwi_B          220 AG--ST  223 (270)
T ss_dssp             TT--CS
T ss_pred             CC--CC
Confidence            98  66

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.43  E-value=0.3  Score=42.25  Aligned_cols=212  Identities=8%  Similarity=0.045  Sum_probs=101.3

Q ss_pred             eeEEEEeCCCCCccc-cCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHV-LSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..+..+|..+.+-.. +.......... ..+.+|..++.++.  ...+.+||..+++-...  +... .....++...+ 
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~-~~spdg~~l~~g~~--dg~v~i~~~~~~~~~~~--~~~~-~~~v~~~~~sp-  174 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTL-AFSPDSQYLATGTH--VGKVNIFGVESGKKEYS--LDTR-GKFILSIAYSP-  174 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCE-EECTTSSEEEEECT--TSEEEEEETTTCSEEEE--EECS-SSCEEEEEECT-
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEE-EECCCCCEEEEEcC--CCcEEEEEcCCCceeEE--ecCC-CceEEEEEECC-
Confidence            455567776553321 11111111111 22334444444443  46788888877653221  1111 11112222211 


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceee-ecCCCccccccceeccCCceEEE-CCEEEEEEcCCc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI-IGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~  219 (373)
                             +++.++.|+.+          ..+.+||.++++-.. +...         ...-..+++. +|.+.+. +...
T Consensus       175 -------dg~~lasg~~d----------g~i~iwd~~~~~~~~~~~~h---------~~~v~~l~~spd~~~l~s-~s~d  227 (321)
T 3ow8_A          175 -------DGKYLASGAID----------GIINIFDIATGKLLHTLEGH---------AMPIRSLTFSPDSQLLVT-ASDD  227 (321)
T ss_dssp             -------TSSEEEEEETT----------SCEEEEETTTTEEEEEECCC---------SSCCCEEEECTTSCEEEE-ECTT
T ss_pred             -------CCCEEEEEcCC----------CeEEEEECCCCcEEEEEccc---------CCceeEEEEcCCCCEEEE-EcCC
Confidence                   15666666554          358899988765321 1111         0011122222 4555555 4456


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCce-eEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFA-TLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ..|..||+.+.+....   +....... .++.. +|..++.++ .+..+.+|++..      .+.+..+..-...     
T Consensus       228 g~i~iwd~~~~~~~~~---~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~------~~~~~~~~~h~~~-----  292 (321)
T 3ow8_A          228 GYIKIYDVQHANLAGT---LSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGT------RTCVHTFFDHQDQ-----  292 (321)
T ss_dssp             SCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT------TEEEEEECCCSSC-----
T ss_pred             CeEEEEECCCcceeEE---EcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCC------CEEEEEEcCCCCc-----
Confidence            7799999987655432   11111112 22222 566655554 444589999854      3444444221100     


Q ss_pred             CCCCCceEEE-ecCCEEEEEEcCCccEEEEEc
Q 046684          298 KASWGGTRCA-AGNGAICLYREVGLGMIIWRE  328 (373)
Q Consensus       298 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~yd~  328 (373)
                           ...+. ..++..++.++..+.+.+||.
T Consensus       293 -----v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          293 -----VWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             -----EEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             -----EEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence                 12222 235566667777778988885

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.21  Score=44.55  Aligned_cols=145  Identities=8%  Similarity=-0.070  Sum_probs=70.1

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ..++.+++.+.   ...+.+||..+++-...  +............. +.        ++.++.++.+          ..
T Consensus       215 ~~~~~~~~~~~---~g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~-~~--------~~~l~~~~~d----------~~  270 (425)
T 1r5m_A          215 VDDDKFVIPGP---KGAIFVYQITEKTPTGK--LIGHHGPISVLEFN-DT--------NKLLLSASDD----------GT  270 (425)
T ss_dssp             EETTEEEEECG---GGCEEEEETTCSSCSEE--ECCCSSCEEEEEEE-TT--------TTEEEEEETT----------SC
T ss_pred             cCCCEEEEEcC---CCeEEEEEcCCCceeee--eccCCCceEEEEEC-CC--------CCEEEEEcCC----------CE
Confidence            44666555444   56799999988653221  11111111112222 11        4455555543          35


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS  250 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~  250 (373)
                      +.+||..+++-...-..        .......+++. ++ .++. +.....+..||+.+.+-... ...... .-..+..
T Consensus       271 i~i~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~-~l~~-~~~d~~i~i~d~~~~~~~~~-~~~~~~-~i~~~~~  338 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYG--------HSQSIVSASWVGDD-KVIS-CSMDGSVRLWSLKQNTLLAL-SIVDGV-PIFAGRI  338 (425)
T ss_dssp             EEEECSSSBSCSEEECC--------CSSCEEEEEEETTT-EEEE-EETTSEEEEEETTTTEEEEE-EECTTC-CEEEEEE
T ss_pred             EEEEECCCCccceEecC--------CCccEEEEEECCCC-EEEE-EeCCCcEEEEECCCCcEeEe-cccCCc-cEEEEEE
Confidence            88898876542211110        00011122333 45 3333 34567899999987764333 121111 1112222


Q ss_pred             -ECCEEEEEEeecCCceEEEEeec
Q 046684          251 -RNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       251 -~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                       -++.++++++ .+..+.+|++..
T Consensus       339 s~~~~~l~~~~-~dg~i~i~~~~~  361 (425)
T 1r5m_A          339 SQDGQKYAVAF-MDGQVNVYDLKK  361 (425)
T ss_dssp             CTTSSEEEEEE-TTSCEEEEECHH
T ss_pred             cCCCCEEEEEE-CCCeEEEEECCC
Confidence             2566666654 344589999875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.40  E-value=0.32  Score=42.08  Aligned_cols=144  Identities=9%  Similarity=0.026  Sum_probs=76.1

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceee-ecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI-IGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~  227 (373)
                      ..+++.|+.+          ..+.++|..+++-.. +..-+         ......++ -+|...+. +.....+..||.
T Consensus        92 ~~~l~s~s~D----------~~i~lWd~~~~~~~~~~~~~~---------~~~~~~~~spdg~~l~~-g~~dg~v~i~~~  151 (321)
T 3ow8_A           92 LPIAASSSLD----------AHIRLWDLENGKQIKSIDAGP---------VDAWTLAFSPDSQYLAT-GTHVGKVNIFGV  151 (321)
T ss_dssp             SSEEEEEETT----------SEEEEEETTTTEEEEEEECCT---------TCCCCEEECTTSSEEEE-ECTTSEEEEEET
T ss_pred             CCEEEEEeCC----------CcEEEEECCCCCEEEEEeCCC---------ccEEEEEECCCCCEEEE-EcCCCcEEEEEc
Confidence            4456666554          468899988765322 11111         01111222 24555555 455678889998


Q ss_pred             CCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          228 ESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      ++++-... ..... .....++. -+|++++.++ .+..+.+|++..    .  +.+..+....         ......+
T Consensus       152 ~~~~~~~~-~~~~~-~~v~~~~~spdg~~lasg~-~dg~i~iwd~~~----~--~~~~~~~~h~---------~~v~~l~  213 (321)
T 3ow8_A          152 ESGKKEYS-LDTRG-KFILSIAYSPDGKYLASGA-IDGIINIFDIAT----G--KLLHTLEGHA---------MPIRSLT  213 (321)
T ss_dssp             TTCSEEEE-EECSS-SCEEEEEECTTSSEEEEEE-TTSCEEEEETTT----T--EEEEEECCCS---------SCCCEEE
T ss_pred             CCCceeEE-ecCCC-ceEEEEEECCCCCEEEEEc-CCCeEEEEECCC----C--cEEEEEcccC---------CceeEEE
Confidence            87654322 11111 11112222 2566666654 344579999864    3  3344433211         0002333


Q ss_pred             EecCCEEEEEEcCCccEEEEEccccCC
Q 046684          307 AAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       307 ~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ...++.+++.++..+.+.+||.+  +.
T Consensus       214 ~spd~~~l~s~s~dg~i~iwd~~--~~  238 (321)
T 3ow8_A          214 FSPDSQLLVTASDDGYIKIYDVQ--HA  238 (321)
T ss_dssp             ECTTSCEEEEECTTSCEEEEETT--TC
T ss_pred             EcCCCCEEEEEcCCCeEEEEECC--Cc
Confidence            44467777888888889999999  76

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.39  E-value=0.099  Score=49.52  Aligned_cols=195  Identities=8%  Similarity=0.004  Sum_probs=100.8

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      .++++|+....  .+.+.++|+.|++-.. ++   .....+.+. + .+.+       ..+|+.+ .+          ..
T Consensus       165 ~~~~~~V~~~~--~~~V~viD~~t~~v~~~i~---~g~~p~~v~-~-SpDG-------r~lyv~~-~d----------g~  219 (567)
T 1qks_A          165 LENLFSVTLRD--AGQIALIDGSTYEIKTVLD---TGYAVHISR-L-SASG-------RYLFVIG-RD----------GK  219 (567)
T ss_dssp             GGGEEEEEETT--TTEEEEEETTTCCEEEEEE---CSSCEEEEE-E-CTTS-------CEEEEEE-TT----------SE
T ss_pred             CCceEEEEeCC--CCeEEEEECCCCeEEEEEe---CCCCccceE-E-CCCC-------CEEEEEc-CC----------Ce
Confidence            36778887654  5789999999987543 32   221112222 2 2211       4577654 22          36


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEE-----CC-EEEEEEcCCceEEEEEECCCCcEEecccCCC-----
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-----RG-MLYWITSARAYSVIGFDIESNTWRELSAPMA-----  240 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-----~g-~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p-----  240 (373)
                      +.+||..+.+-+.+..++.+    .   ....+++-     +| .+|+. ....+.+.++|..+.+-... .+..     
T Consensus       220 V~viD~~~~t~~~v~~i~~G----~---~P~~ia~s~~~~pDGk~l~v~-n~~~~~v~ViD~~t~~~~~~-i~~~~~~~~  290 (567)
T 1qks_A          220 VNMIDLWMKEPTTVAEIKIG----S---EARSIETSKMEGWEDKYAIAG-AYWPPQYVIMDGETLEPKKI-QSTRGMTYD  290 (567)
T ss_dssp             EEEEETTSSSCCEEEEEECC----S---EEEEEEECCSTTCTTTEEEEE-EEETTEEEEEETTTCCEEEE-EECCEECTT
T ss_pred             EEEEECCCCCCcEeEEEecC----C---CCceeEEccccCCCCCEEEEE-EccCCeEEEEECCCCcEEEE-Eeccccccc
Confidence            99999852222333333211    1   11223443     56 45555 45567888999877654332 1211     


Q ss_pred             ------CCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEE
Q 046684          241 ------DRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAI  313 (373)
Q Consensus       241 ------~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i  313 (373)
                            ..+. ..++. .++..+++.-....  .+|..+.  .......+..++...+.+         ...+...+..+
T Consensus       291 ~~~~~p~~rv-a~i~~s~~~~~~vv~~~~~g--~v~~vd~--~~~~~~~v~~i~~~~~~~---------d~~~~pdgr~~  356 (567)
T 1qks_A          291 EQEYHPEPRV-AAILASHYRPEFIVNVKETG--KILLVDY--TDLNNLKTTEISAERFLH---------DGGLDGSHRYF  356 (567)
T ss_dssp             TCCEESCCCE-EEEEECSSSSEEEEEETTTT--EEEEEET--TCSSEEEEEEEECCSSEE---------EEEECTTSCEE
T ss_pred             cccccCCCce-EEEEEcCCCCEEEEEecCCC--eEEEEec--CCCccceeeeeecccccc---------CceECCCCCEE
Confidence                  1111 12222 23455555443333  4444443  335555666665443321         12333345667


Q ss_pred             EEEEcCCccEEEEEccccCCcccE
Q 046684          314 CLYREVGLGMIIWREDEDKRKWEW  337 (373)
Q Consensus       314 ~~~~~~~~~~~~yd~~~~~~~~~W  337 (373)
                      |+....++.+.++|.+  +++...
T Consensus       357 ~va~~~sn~V~ViD~~--t~kl~~  378 (567)
T 1qks_A          357 ITAANARNKLVVIDTK--EGKLVA  378 (567)
T ss_dssp             EEEEGGGTEEEEEETT--TTEEEE
T ss_pred             EEEeCCCCeEEEEECC--CCcEEE
Confidence            7777777889999999  884433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.38  E-value=0.42  Score=46.43  Aligned_cols=116  Identities=13%  Similarity=0.173  Sum_probs=70.8

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCC--------CCCCeEEEEEcCCCCCCCCCceEEEEEeccC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVS--------RTNPAVGIVMEGPAQHGPFPNFRIYVAGGMS  159 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~  159 (373)
                      -...+|.||+...   ...++.+|..|++  |+.-+..+..        ....+.++.+           ++||+.. .+
T Consensus        66 P~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~v~v~~-~d  130 (689)
T 1yiq_A           66 PIVVDGVMYTTGP---FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK-----------GKVYVGV-LD  130 (689)
T ss_dssp             CEEETTEEEEECG---GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET-----------TEEEEEC-TT
T ss_pred             CEEECCEEEEEcC---CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC-----------CEEEEEc-cC
Confidence            3467999999876   4679999999886  7653322210        0111223332           7777753 22


Q ss_pred             CCCCCCCcccceEEEEECCCCc--eeeecC-CCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCCc-
Q 046684          160 DEPRGGATYESMVEMYDSRHDA--WQIIGS-MPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESNT-  231 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~~-  231 (373)
                                ..+..+|.++++  |+.-.. -+.     .......+.++.+|.+|+-.+.    ....+.+||.++++ 
T Consensus       131 ----------g~l~AlDa~TG~~~W~~~~~~~~~-----~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          131 ----------GRLEAIDAKTGQRAWSVDTRADHK-----RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             ----------SEEEEEETTTCCEEEEEECCSCTT-----SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             ----------CEEEEEECCCCCEeeeecCcCCCC-----CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence                      368999998876  876543 110     1112223446789999885321    25789999999875 


Q ss_pred             -EEec
Q 046684          232 -WREL  235 (373)
Q Consensus       232 -w~~~  235 (373)
                       |+.-
T Consensus       196 ~W~~~  200 (689)
T 1yiq_A          196 AWRFY  200 (689)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence             7754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.33  E-value=0.1  Score=45.70  Aligned_cols=193  Identities=10%  Similarity=0.082  Sum_probs=93.2

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|.+++.++.  ...+.+||..++++.....+.........++...+        +++.++.|+.+          ..+.
T Consensus        27 ~g~~las~~~--D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--------~g~~l~s~s~D----------~~v~   86 (345)
T 3fm0_A           27 AGTLLASCGG--DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--------CGNYLASASFD----------ATTC   86 (345)
T ss_dssp             TSSCEEEEET--TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--------TSSEEEEEETT----------SCEE
T ss_pred             CCCEEEEEcC--CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--------CCCEEEEEECC----------CcEE
Confidence            4444444432  45688888887776432221111111111222221        15566666554          3577


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCC-cEEecccCCCCCCCcee-EEE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESN-TWRELSAPMADRLEFAT-LVS  250 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~-~w~~~~~~~p~~~~~~~-~~~  250 (373)
                      +||..++.++.+..+..      ....-..+++. +|.+.+.+ .....|..+|+.++ ....+ ..+........ ++.
T Consensus        87 iw~~~~~~~~~~~~~~~------h~~~v~~v~~sp~~~~l~s~-s~D~~v~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEG------HENEVKSVAWAPSGNLLATC-SRDKSVWVWEVDEEDEYECV-SVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EEEECCC-EEEEEEECC------CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECTTSCEEEE-EEECCCCSCEEEEEE
T ss_pred             EEEccCCCeEEEEEccC------CCCCceEEEEeCCCCEEEEE-ECCCeEEEEECCCCCCeEEE-EEecCcCCCeEEEEE
Confidence            88877776654433310      00000111222 45555554 34567888888764 33333 12222222222 222


Q ss_pred             -ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEc
Q 046684          251 -RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRE  328 (373)
Q Consensus       251 -~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~  328 (373)
                       -++.+++.++ .+..+.+|+...    ..|..+..+..-...         .....+..++..++.++.++.+.+||.
T Consensus       159 ~p~~~~l~s~s-~d~~i~~w~~~~----~~~~~~~~~~~h~~~---------v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          159 HPSQELLASAS-YDDTVKLYREEE----DDWVCCATLEGHEST---------VWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CSSSSCEEEEE-TTSCEEEEEEET----TEEEEEEEECCCSSC---------EEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEEe-CCCcEEEEEecC----CCEEEEEEecCCCCc---------eEEEEECCCCCEEEEEeCCCeEEEecc
Confidence             2566555554 444579999976    777766555421100         012222335666677777777888875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.32  E-value=0.35  Score=47.64  Aligned_cols=219  Identities=7%  Similarity=-0.027  Sum_probs=102.7

Q ss_pred             eeEEEEeCCCCCccc-cCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCCCCCeEEEEEcC
Q 046684           63 LCCYVHNPVSDKWHV-LSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~  140 (373)
                      ..+..||..+..... +.....+-... .-+.+|..++.++.  ...+.+||..+++... +....   .. -..+...+
T Consensus        35 g~v~iwd~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~---~~-v~~~~~s~  107 (814)
T 3mkq_A           35 GRVEIWNYETQVEVRSIQVTETPVRAG-KFIARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHP---DY-IRSIAVHP  107 (814)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEE-EEEGGGTEEEEEET--TSEEEEEETTTCCEEEEEECCS---SC-EEEEEECS
T ss_pred             CEEEEEECCCCceEEEEecCCCcEEEE-EEeCCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCC---CC-EEEEEEeC
Confidence            456678876654322 22111111111 22334443443432  5789999998887543 22111   11 11122211


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCC
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSAR  218 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~  218 (373)
                              +++.++.|+.+          ..+.+||..++ |.....+.      .....-..+++.  ++...+.+ ..
T Consensus       108 --------~~~~l~~~~~d----------g~i~vw~~~~~-~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~-~~  161 (814)
T 3mkq_A          108 --------TKPYVLSGSDD----------LTVKLWNWENN-WALEQTFE------GHEHFVMCVAFNPKDPSTFASG-CL  161 (814)
T ss_dssp             --------SSSEEEEEETT----------SEEEEEEGGGT-SEEEEEEE------CCSSCEEEEEEETTEEEEEEEE-ET
T ss_pred             --------CCCEEEEEcCC----------CEEEEEECCCC-ceEEEEEc------CCCCcEEEEEEEcCCCCEEEEE-eC
Confidence                    14445555443          46888998765 22221110      000011122333  35555553 45


Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCCceeEEEE---CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhc
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLEFATLVSR---NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLS  295 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~---~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~  295 (373)
                      ...|..||+.+.+-... ...........+...   ++.++++++ .+..+.+|++..    .  ..+..+......   
T Consensus       162 dg~v~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~----~--~~~~~~~~~~~~---  230 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFT-LTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQT----K--SCVATLEGHMSN---  230 (814)
T ss_dssp             TSEEEEEETTCSSCSEE-EECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTT----T--EEEEEEECCSSC---
T ss_pred             CCeEEEEECCCCcceeE-EecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCC----C--cEEEEEcCCCCC---
Confidence            67899999876543222 111111111222222   566666654 344578998854    2  333333211100   


Q ss_pred             CCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          296 GGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       296 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                            ....+...++.+++.++..+.+.+||+.  +.
T Consensus       231 ------v~~~~~~~~~~~l~~~~~dg~v~vwd~~--~~  260 (814)
T 3mkq_A          231 ------VSFAVFHPTLPIIISGSEDGTLKIWNSS--TY  260 (814)
T ss_dssp             ------EEEEEECSSSSEEEEEETTSCEEEEETT--TC
T ss_pred             ------EEEEEEcCCCCEEEEEeCCCeEEEEECC--CC
Confidence                  0122333455677777777789999999  76

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.32  E-value=0.45  Score=41.39  Aligned_cols=106  Identities=13%  Similarity=0.083  Sum_probs=57.1

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      ++.+.+.| .....|..+|+.+++-... ..  .+.... .++. -++.+++.++ .+..+.+|++..    .  ..+..
T Consensus       195 ~~~~l~sg-~~d~~v~~wd~~~~~~~~~-~~--~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~----~--~~~~~  263 (340)
T 1got_B          195 DTRLFVSG-ACDASAKLWDVREGMCRQT-FT--GHESDINAICFFPNGNAFATGS-DDATCRLFDLRA----D--QELMT  263 (340)
T ss_dssp             TSSEEEEE-ETTSCEEEEETTTCSEEEE-EC--CCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT----T--EEEEE
T ss_pred             CCCEEEEE-eCCCcEEEEECCCCeeEEE-Ec--CCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCC----C--cEEEE
Confidence            45555554 4567788999987654322 11  111112 2222 2566666655 444579999865    2  22322


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .......   ...    .......++.+++.++..+.+.+||..  +.
T Consensus       264 ~~~~~~~---~~v----~~~~~s~~g~~l~~g~~d~~i~vwd~~--~~  302 (340)
T 1got_B          264 YSHDNII---CGI----TSVSFSKSGRLLLAGYDDFNCNVWDAL--KA  302 (340)
T ss_dssp             ECCTTCC---SCE----EEEEECTTSSEEEEEETTSEEEEEETT--TC
T ss_pred             EccCCcc---cce----EEEEECCCCCEEEEECCCCeEEEEEcc--cC
Confidence            2211100   000    122333467788888888889999998  66

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.32  E-value=0.51  Score=41.52  Aligned_cols=216  Identities=7%  Similarity=-0.021  Sum_probs=115.7

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE--eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS--SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~--~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      ..+..+++.......+.. ...+ ...++  ..++.||+....  ...++.+++.....+.+..... ....++++-...
T Consensus        53 ~~I~~i~~~g~~~~~~~~-~~~~-~~~l~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~-~~p~glavd~~~  127 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLN-NLEN-AIALDFHHRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGL-ESPGGLAVDWVH  127 (349)
T ss_dssp             SCEEEECTTSCCEEEEEC-SCSC-EEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTT
T ss_pred             cceEEEeCCCCeeEEeec-CCCc-eEEEEEeccccEEEEEecc--CCceEEEecCCCCceEEEeCCC-CCccEEEEecCC
Confidence            346667776655443311 1111 22333  357889987753  4678999998776544321111 111233332111


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCC
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSAR  218 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~  218 (373)
                               ++||+.-..          ...+++++.....-+.+....        .......++-  +|.|||.....
T Consensus       128 ---------g~ly~~d~~----------~~~I~~~~~dG~~~~~l~~~~--------l~~P~~iavdp~~g~ly~td~~~  180 (349)
T 3v64_C          128 ---------DKLYWTDSG----------TSRIEVANLDGAHRKVLLWQS--------LEKPRAIALHPMEGTIYWTDWGN  180 (349)
T ss_dssp             ---------TEEEEEETT----------TTEEEEEETTSCSCEEEECTT--------CSCEEEEEEETTTTEEEEEECSS
T ss_pred             ---------CeEEEEcCC----------CCeEEEEcCCCCceEEEEeCC--------CCCcceEEEecCcCeEEEeccCC
Confidence                     778887532          246888888665433332110        0011223443  68999995333


Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcC
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSG  296 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~  296 (373)
                      ...|.++|+....-+.+ ...... .-.+++.-  +++||++.... ..+..++++.    ..=..+....  .      
T Consensus       181 ~~~I~r~~~dG~~~~~~-~~~~~~-~PnGla~d~~~~~lY~aD~~~-~~I~~~~~dG----~~~~~~~~~~--~------  245 (349)
T 3v64_C          181 TPRIEASSMDGSGRRII-ADTHLF-WPNGLTIDYAGRRMYWVDAKH-HVIERANLDG----SHRKAVISQG--L------  245 (349)
T ss_dssp             SCEEEEEETTSCSCEES-CCSSCS-CEEEEEEETTTTEEEEEETTT-TEEEEEETTS----CSCEEEECSS--C------
T ss_pred             CCEEEEEeCCCCCcEEE-EECCCC-CcceEEEeCCCCEEEEEECCC-CEEEEEeCCC----CceEEEEeCC--C------
Confidence            48899999986554444 221111 12244443  78999986432 2344444432    2112222111  1      


Q ss_pred             CCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          297 GKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                          ..+..++..++.||+.+.....|..+|..
T Consensus       246 ----~~P~giav~~~~ly~td~~~~~V~~~~~~  274 (349)
T 3v64_C          246 ----PHPFAITVFEDSLYWTDWHTKSINSANKF  274 (349)
T ss_dssp             ----SSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ----CCceEEEEECCEEEEecCCCCeEEEEEcc
Confidence                11566666889999999888889999965

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.42  Score=40.51  Aligned_cols=106  Identities=9%  Similarity=0.064  Sum_probs=55.1

Q ss_pred             ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      -++. ++. +.....+..||+.+.+-... ..... ..-..+... +++  ++.+..+..+.+|++..    .+-.....
T Consensus       194 ~~~~-~~~-~~~dg~i~i~d~~~~~~~~~-~~~~~-~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~----~~~~~~~~  263 (313)
T 3odt_A          194 DDGH-FIS-CSNDGLIKLVDMHTGDVLRT-YEGHE-SFVYCIKLLPNGD--IVSCGEDRTVRIWSKEN----GSLKQVIT  263 (313)
T ss_dssp             ETTE-EEE-EETTSEEEEEETTTCCEEEE-EECCS-SCEEEEEECTTSC--EEEEETTSEEEEECTTT----CCEEEEEE
T ss_pred             CCCe-EEE-ccCCCeEEEEECCchhhhhh-hhcCC-ceEEEEEEecCCC--EEEEecCCEEEEEECCC----CceeEEEe
Confidence            3566 334 34567899999987654332 11111 111223332 443  33344455589999865    43332222


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEE
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWV  338 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~  338 (373)
                      .+....           .......++. ++.++..+.+.+||++  ++  ++.
T Consensus       264 ~~~~~i-----------~~~~~~~~~~-~~~~~~dg~i~iw~~~--~~--~~~  300 (313)
T 3odt_A          264 LPAISI-----------WSVDCMSNGD-IIVGSSDNLVRIFSQE--KS--RWA  300 (313)
T ss_dssp             CSSSCE-----------EEEEECTTSC-EEEEETTSCEEEEESC--GG--GCC
T ss_pred             ccCceE-----------EEEEEccCCC-EEEEeCCCcEEEEeCC--CC--cee
Confidence            221110           1222333555 4557777889999999  87  543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.30  E-value=0.34  Score=41.74  Aligned_cols=113  Identities=12%  Similarity=0.113  Sum_probs=54.4

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP  287 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p  287 (373)
                      +|.+.+.+ .....|..||+.+.+-... ..  .......+....+..+++++. +..+.+|+++.    .  ..+..+.
T Consensus       226 ~~~~l~s~-s~Dg~i~iwd~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~~~~~-d~~i~iwd~~~----~--~~~~~~~  294 (340)
T 4aow_A          226 DGSLCASG-GKDGQAMLWDLNEGKHLYT-LD--GGDIINALCFSPNRYWLCAAT-GPSIKIWDLEG----K--IIVDELK  294 (340)
T ss_dssp             TSSEEEEE-ETTCEEEEEETTTTEEEEE-EE--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT----T--EEEEEEC
T ss_pred             CCCEEEEE-eCCCeEEEEEeccCceeee-ec--CCceEEeeecCCCCceeeccC-CCEEEEEECCC----C--eEEEecc
Confidence            45555554 4467788899887653322 11  111112233333444444443 34578998854    2  2333332


Q ss_pred             hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ..................+...++..++.++.++.|.+||++  ++
T Consensus       295 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~--tG  338 (340)
T 4aow_A          295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT--IG  338 (340)
T ss_dssp             CC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE--C-
T ss_pred             ccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--Cc
Confidence            211111000000000122233466677778888889999999  76

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.30  E-value=0.59  Score=42.02  Aligned_cols=218  Identities=8%  Similarity=-0.022  Sum_probs=113.0

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE--eeCcEEEEeeCCCCceEEEEEcCcccc----eeccCCCCCCCCCCeEEE
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS--SIGSFLLLRPINSTILQLVLCNPFTRQ----FRYLPLLNVSRTNPAVGI  136 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~--~~~g~l~~~gg~~~~~~~~v~np~t~~----w~~lp~~~~~~~~~~~~~  136 (373)
                      ..+...|........+-..  ......++  ..++.||+....  ...++.+++....    ...+..  .....+...+
T Consensus        92 ~~I~~i~l~~~~~~~~~~~--~~~~~~l~~d~~~~~lywsD~~--~~~I~~~~~~g~~~~~~~~~~~~--~~~~~p~gla  165 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLA  165 (400)
T ss_dssp             TEEEEECTTSCSCEEEECS--CSCEEEEEEETTTTEEEEEETT--TTEEEEEEC------CCCEEEEC--SSCSCEEEEE
T ss_pred             ceeEEEccCCcceeEeccc--cCcceEEeeeeccCceEEEecC--CCeEEEEEcccCCCCCcceEEEe--CCCCCcccEE
Confidence            4666677776665544211  11222333  347899998753  4678888886522    111111  1111222222


Q ss_pred             EEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEE
Q 046684          137 VMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWI  214 (373)
Q Consensus       137 ~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~  214 (373)
                      ++ ..  .     ++||+.-...          ..+++++.....-+.+.....     .   .....++-  +|.|||.
T Consensus       166 vD-~~--~-----~~lY~~d~~~----------~~I~~~~~~g~~~~~l~~~~~-----~---~P~~iavdp~~g~ly~t  219 (400)
T 3p5b_L          166 VD-WI--H-----SNIYWTDSVL----------GTVSVADTKGVKRKTLFRENG-----S---KPRAIVVDPVHGFMYWT  219 (400)
T ss_dssp             EE-TT--T-----TEEEEEETTT----------TEEEEECTTTCSEEEEEECSS-----C---CEEEEEEETTTTEEEEE
T ss_pred             EE-ec--C-----CceEEEECCC----------CeEEEEeCCCCceEEEEeCCC-----C---CcceEEEecccCeEEEE
Confidence            32 11  1     7788875322          468888887665444322100     0   11122332  5899998


Q ss_pred             EcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          215 TSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       215 gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      .......|..+++....-..+ ..... ..-.+++.-  +++||++.... ..+...+++.   ......+ ..+...  
T Consensus       220 d~~~~~~I~~~~~dG~~~~~~-~~~~l-~~P~glavd~~~~~lY~aD~~~-~~I~~~d~dG---~~~~~~~-~~~~~l--  290 (400)
T 3p5b_L          220 DWGTPAKIKKGGLNGVDIYSL-VTENI-QWPNGITLDLLSGRLYWVDSKL-HSISSIDVNG---GNRKTIL-EDEKRL--  290 (400)
T ss_dssp             ECSSSCCEEEEETTSCSCEEE-ECSSC-SCEEEEEEETTTTEEEEEETTT-TEEEEEETTS---CCCEEEE-ECSSTT--
T ss_pred             eCCCCCEEEEEeCCCCccEEE-EECCC-CceEEEEEEeCCCEEEEEECCC-CEEEEEeCCC---CccEEEE-eCCCCC--
Confidence            533346899999876544333 11111 111244443  68999986422 2244444432   2233332 211111  


Q ss_pred             hhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          293 RLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                              ..+.+++..++.||+.+.....|..+|..
T Consensus       291 --------~~P~gl~v~~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          291 --------AHPFSLAVFEDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             --------SSEEEEEEETTEEEEEESSSCSEEEEESS
T ss_pred             --------CCCEEEEEeCCEEEEecCCCCeEEEEEcC
Confidence                    11567777899999999877889999965

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.29  E-value=0.61  Score=42.37  Aligned_cols=102  Identities=8%  Similarity=-0.000  Sum_probs=57.2

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP  287 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p  287 (373)
                      ++...+.| ...+.|..||+.+++-...   +..+......+..++..++.++ .+..+.+|++..    ..  ......
T Consensus       321 ~~~~l~sg-~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~l~s~s-~dg~v~vwd~~~----~~--~~~~~~  389 (464)
T 3v7d_B          321 ERKRCISA-SMDTTIRIWDLENGELMYT---LQGHTALVGLLRLSDKFLVSAA-ADGSIRGWDAND----YS--RKFSYH  389 (464)
T ss_dssp             TTTEEEEE-ETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECSSEEEEEE-TTSEEEEEETTT----CC--EEEEEE
T ss_pred             CCCEEEEE-eCCCcEEEEECCCCcEEEE---EeCCCCcEEEEEEcCCEEEEEe-CCCcEEEEECCC----Cc--eeeeec
Confidence            34444443 4567799999987754322   1222233344455666655554 344589999875    22  222221


Q ss_pred             hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ....          ....+...++.+++.++ .+.+.+||.+  ++
T Consensus       390 ~~~~----------~~~~~~~~~~~~l~~~~-dg~i~iwd~~--~g  422 (464)
T 3v7d_B          390 HTNL----------SAITTFYVSDNILVSGS-ENQFNIYNLR--SG  422 (464)
T ss_dssp             CTTC----------CCEEEEEECSSEEEEEE-TTEEEEEETT--TC
T ss_pred             CCCC----------ccEEEEEeCCCEEEEec-CCeEEEEECC--CC
Confidence            1110          12444555666666665 5689999999  88

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.29  E-value=0.0012  Score=63.18  Aligned_cols=34  Identities=21%  Similarity=0.511  Sum_probs=31.7

Q ss_pred             CcchHHHHHHHHhcC-ChhhHHHhhcccccchhcc
Q 046684            3 SNLHLDVLANIFSFL-SPDSLARAKSVCSHWHTCA   36 (373)
Q Consensus         3 ~~Lp~dll~~Il~rL-P~~~l~r~r~Vck~W~~li   36 (373)
                      +.||+|++.+||++| |.+++.++..|||+|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            479999999999999 8999999999999998874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.29  E-value=0.21  Score=45.13  Aligned_cols=176  Identities=11%  Similarity=-0.015  Sum_probs=88.2

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE-eeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS-SIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      ..++.+|..+.+...+...  ......++ +.+| .|++.+..+....++++|..+++...+.....    ........+
T Consensus       203 ~~i~~~d~~tg~~~~l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~----~~~~~~~sp  276 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS----NNTEPTWFP  276 (415)
T ss_dssp             CEEEEEETTTCCEEEEECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS----CEEEEEECT
T ss_pred             cEEEEEECCCCcEEEeecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC----cccceEECC
Confidence            5778888887766544322  11122222 3344 45545544445679999999988766544321    111122211


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCC-
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSAR-  218 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~-  218 (373)
                      .+       ..|+..+..+        ....++++|..++.-+.+.....         .....++ -+|+..+++... 
T Consensus       277 dg-------~~l~~~s~~~--------g~~~i~~~d~~~~~~~~l~~~~~---------~~~~~~~spdG~~l~~~~~~~  332 (415)
T 2hqs_A          277 DS-------QNLAFTSDQA--------GRPQVYKVNINGGAPQRITWEGS---------QNQDADVSSDGKFMVMVSSNG  332 (415)
T ss_dssp             TS-------SEEEEEECTT--------SSCEEEEEETTSSCCEECCCSSS---------EEEEEEECTTSSEEEEEEECS
T ss_pred             CC-------CEEEEEECCC--------CCcEEEEEECCCCCEEEEecCCC---------cccCeEECCCCCEEEEEECcC
Confidence            11       3354444221        13478899998876444332210         0111122 245533333222 


Q ss_pred             -ceEEEEEECCCCcEEecccCCCCCCCceeEE-EECCEEEEEEeecCCceEEEEee
Q 046684          219 -AYSVIGFDIESNTWRELSAPMADRLEFATLV-SRNQKLTLIGGTCGGDACVWELS  272 (373)
Q Consensus       219 -~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~-~~~g~l~~~gg~~~~~~~i~~~~  272 (373)
                       ...|..+|+++++...+ ....   ....+. .-+|+.+++++..+....+|..+
T Consensus       333 g~~~i~~~d~~~~~~~~l-~~~~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d  384 (415)
T 2hqs_A          333 GQQHIAKQDLATGGVQVL-SSTF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVS  384 (415)
T ss_dssp             SCEEEEEEETTTCCEEEC-CCSS---SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEEECCCCCEEEe-cCCC---CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence             46899999999888766 2221   112222 23677666655554433444443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.23  E-value=0.33  Score=42.29  Aligned_cols=103  Identities=15%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      ++.+. . +.....|..+|+.+++-... ..  .+.... .+... ++.+++.++ .+..+.+|++..    ..  .+..
T Consensus       154 ~~~l~-s-~s~d~~i~~wd~~~~~~~~~-~~--~h~~~v~~~~~~~~~~~l~sg~-~d~~v~~wd~~~----~~--~~~~  221 (340)
T 1got_B          154 DNQIV-T-SSGDTTCALWDIETGQQTTT-FT--GHTGDVMSLSLAPDTRLFVSGA-CDASAKLWDVRE----GM--CRQT  221 (340)
T ss_dssp             TTEEE-E-EETTSCEEEEETTTTEEEEE-EC--CCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT----CS--EEEE
T ss_pred             CCcEE-E-EECCCcEEEEECCCCcEEEE-Ec--CCCCceEEEEECCCCCEEEEEe-CCCcEEEEECCC----Ce--eEEE
Confidence            45533 3 23456788999988765433 11  111111 22222 566666654 444579999865    32  2222


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +..-.         ......++..++..++.++..+.+.+||++  ++
T Consensus       222 ~~~h~---------~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~--~~  258 (340)
T 1got_B          222 FTGHE---------SDINAICFFPNGNAFATGSDDATCRLFDLR--AD  258 (340)
T ss_dssp             ECCCS---------SCEEEEEECTTSSEEEEEETTSCEEEEETT--TT
T ss_pred             EcCCc---------CCEEEEEEcCCCCEEEEEcCCCcEEEEECC--CC
Confidence            22100         000122333466777788888889999998  76

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.20  E-value=1.1  Score=44.17  Aligned_cols=227  Identities=10%  Similarity=-0.044  Sum_probs=115.3

Q ss_pred             eEEEEeCCCCCccccCCC-CCCCCc-eeEEe-eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684           64 CCYVHNPVSDKWHVLSLD-FLPYPV-RPVSS-IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~~~-~~~~~~-~~~~~-~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      .+..||+.++.+.....+ ..+... .++.. .+|.|++...   ..-++++|+.+++++.++..... .....++..+.
T Consensus       384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~---~~Gl~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~  459 (781)
T 3v9f_A          384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTY---LGNISYYNTRLKKFQIIELEKNE-LLDVRVFYEDK  459 (781)
T ss_dssp             CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEET---TEEEEEECSSSCEEEECCSTTTC-CCCEEEEEECT
T ss_pred             cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEec---cCCEEEEcCCCCcEEEeccCCCC-CCeEEEEEECC
Confidence            355577665554443211 112111 22222 2677777543   35689999999998876532111 11222333321


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCC
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSAR  218 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~  218 (373)
                         +     ++|++...            ..+.+||+.+++|+.....+..    ............  +|.+++..  .
T Consensus       460 ---~-----g~lwigt~------------~Gl~~~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~d~~g~lWigt--~  513 (781)
T 3v9f_A          460 ---N-----KKIWIGTH------------AGVFVIDLASKKVIHHYDTSNS----QLLENFVRSIAQDSEGRFWIGT--F  513 (781)
T ss_dssp             ---T-----SEEEEEET------------TEEEEEESSSSSCCEEECTTTS----SCSCSCEEEEEECTTCCEEEEE--S
T ss_pred             ---C-----CCEEEEEC------------CceEEEeCCCCeEEecccCccc----ccccceeEEEEEcCCCCEEEEE--c
Confidence               1     67777432            3589999999988776543210    000011111222  46666542  2


Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCCc-eeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcC
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLEF-ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSG  296 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~  296 (373)
                      ...+..||+.++++..+.......... ..+.. .+|.|++...   ..+ ++.++.  ++++++.... ....    ..
T Consensus       514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~---~Gl-v~~~d~--~~~~~~~~~~-~~gl----~~  582 (781)
T 3v9f_A          514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG---EGL-VCFPSA--RNFDYQVFQR-KEGL----PN  582 (781)
T ss_dssp             SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET---TEE-EEESCT--TTCCCEEECG-GGTC----SC
T ss_pred             CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC---CCc-eEEECC--CCCcEEEccc-cCCC----CC
Confidence            356899999999998773211111111 22332 3677777653   222 244443  4466655432 1110    00


Q ss_pred             CCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEe
Q 046684          297 GKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      .   .....+...+|.|++...  ..+..||++  ++  +++..
T Consensus       583 ~---~i~~i~~d~~g~lW~~t~--~Gl~~~~~~--~~--~~~~~  617 (781)
T 3v9f_A          583 T---HIRAISEDKNGNIWASTN--TGISCYITS--KK--CFYTY  617 (781)
T ss_dssp             C---CCCEEEECSSSCEEEECS--SCEEEEETT--TT--EEEEE
T ss_pred             c---eEEEEEECCCCCEEEEcC--CceEEEECC--CC--ceEEe
Confidence            0   001233334688888653  369999999  88  76654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.18  E-value=0.46  Score=39.71  Aligned_cols=189  Identities=10%  Similarity=-0.040  Sum_probs=101.0

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      .++.||+....  ...+.++|+.++.-..+-.  .....+...++. ..  .     +++|+....          ...+
T Consensus        46 ~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~--~~~~~p~~ia~d-~~--~-----~~lyv~d~~----------~~~I  103 (267)
T 1npe_A           46 VDKVVYWTDIS--EPSIGRASLHGGEPTTIIR--QDLGSPEGIALD-HL--G-----RTIFWTDSQ----------LDRI  103 (267)
T ss_dssp             TTTEEEEEETT--TTEEEEEESSSCCCEEEEC--TTCCCEEEEEEE-TT--T-----TEEEEEETT----------TTEE
T ss_pred             CCCEEEEEECC--CCEEEEEecCCCCcEEEEE--CCCCCccEEEEE-ec--C-----CeEEEEECC----------CCEE
Confidence            37889987753  4689999998765433211  111122222332 11  1     678887532          2468


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCC-ceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSAR-AYSVIGFDIESNTWRELSAPMADRLEFATLV  249 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~-~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~  249 (373)
                      .+++.....-+.+....        ......+++-  +|.+||..... ...|..+++....-+.+ ..... ..-.+++
T Consensus       104 ~~~~~~g~~~~~~~~~~--------~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~-~~~~~-~~P~gia  173 (267)
T 1npe_A          104 EVAKMDGTQRRVLFDTG--------LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-AQDNL-GLPNGLT  173 (267)
T ss_dssp             EEEETTSCSCEEEECSS--------CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-ECTTC-SCEEEEE
T ss_pred             EEEEcCCCCEEEEEECC--------CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE-EECCC-CCCcEEE
Confidence            88888654333322110        0011223333  58999985322 46889999876544433 11111 1122344


Q ss_pred             EE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684          250 SR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       250 ~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd  327 (373)
                      .-  ++.||+..... ..+.+++++.    ..  ....++.  .         ..+..++..++.||+.....+.+.++|
T Consensus       174 ~d~~~~~lyv~d~~~-~~I~~~~~~g----~~--~~~~~~~--~---------~~P~gi~~d~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          174 FDAFSSQLCWVDAGT-HRAECLNPAQ----PG--RRKVLEG--L---------QYPFAVTSYGKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             EETTTTEEEEEETTT-TEEEEEETTE----EE--EEEEEEC--C---------CSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EcCCCCEEEEEECCC-CEEEEEecCC----Cc--eEEEecC--C---------CCceEEEEeCCEEEEEECCCCeEEEEe
Confidence            43  56888886432 2344444432    21  1111111  0         114556667899999988778899999


Q ss_pred             ccccCC
Q 046684          328 EDEDKR  333 (373)
Q Consensus       328 ~~~~~~  333 (373)
                      ++  ++
T Consensus       236 ~~--~g  239 (267)
T 1npe_A          236 LA--IS  239 (267)
T ss_dssp             TT--TT
T ss_pred             CC--CC
Confidence            99  76

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.17  E-value=0.65  Score=41.41  Aligned_cols=105  Identities=10%  Similarity=-0.046  Sum_probs=56.3

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      +|.+.+.+ .....+..||+.+.+-... ...........+... ++. +++.++ .+..+.+|++..  ....-..+..
T Consensus       258 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~--~~~~~~~~~~  332 (420)
T 3vl1_A          258 YGKYVIAG-HVSGVITVHNVFSKEQTIQ-LPSKFTCSCNSLTVDGNNANYIYAGY-ENGMLAQWDLRS--PECPVGEFLI  332 (420)
T ss_dssp             TTEEEEEE-ETTSCEEEEETTTCCEEEE-ECCTTSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTC--TTSCSEEEEE
T ss_pred             CCCEEEEE-cCCCeEEEEECCCCceeEE-cccccCCCceeEEEeCCCCCEEEEEe-CCCeEEEEEcCC--CcCchhhhhc
Confidence            46555554 4566799999987754332 121111111222222 444 555554 445589999875  2221222221


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      -....            ...+...++.+++.++..+.+.+||+.
T Consensus       333 ~~~~~------------v~~~~~~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          333 NEGTP------------INNVYFAAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             STTSC------------EEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred             cCCCC------------ceEEEeCCCCEEEEecCCccEEEEecc
Confidence            11110            133344467788888888889999987

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.17  E-value=0.13  Score=45.13  Aligned_cols=157  Identities=10%  Similarity=0.132  Sum_probs=82.9

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      +++++.|+.+          ..+.+||..++.|.....+..+    +. ..-..+++. +|.+.+.+ .....+..+|..
T Consensus        28 g~~las~~~D----------~~i~iw~~~~~~~~~~~~~~~~----h~-~~v~~~~~sp~g~~l~s~-s~D~~v~iw~~~   91 (345)
T 3fm0_A           28 GTLLASCGGD----------RRIRIWGTEGDSWICKSVLSEG----HQ-RTVRKVAWSPCGNYLASA-SFDATTCIWKKN   91 (345)
T ss_dssp             SSCEEEEETT----------SCEEEEEEETTEEEEEEEECSS----CS-SCEEEEEECTTSSEEEEE-ETTSCEEEEEEC
T ss_pred             CCEEEEEcCC----------CeEEEEEcCCCcceeeeeeccc----cC-CcEEEEEECCCCCEEEEE-ECCCcEEEEEcc
Confidence            5566666654          3588888888877533221100    00 000111221 45555553 345667788888


Q ss_pred             CCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          229 SNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      ++.+..+ ..+..+......+..  +|.+++.++. +..+.+|+++.   ...+..+..+..-...         ....+
T Consensus        92 ~~~~~~~-~~~~~h~~~v~~v~~sp~~~~l~s~s~-D~~v~iwd~~~---~~~~~~~~~~~~h~~~---------v~~~~  157 (345)
T 3fm0_A           92 QDDFECV-TTLEGHENEVKSVAWAPSGNLLATCSR-DKSVWVWEVDE---EDEYECVSVLNSHTQD---------VKHVV  157 (345)
T ss_dssp             CC-EEEE-EEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEEECT---TSCEEEEEEECCCCSC---------EEEEE
T ss_pred             CCCeEEE-EEccCCCCCceEEEEeCCCCEEEEEEC-CCeEEEEECCC---CCCeEEEEEecCcCCC---------eEEEE
Confidence            7776554 233332222222222  5666665554 44579999975   2345544443321100         01222


Q ss_pred             EecCCEEEEEEcCCccEEEEEccccCCcccEEEe
Q 046684          307 AAGNGAICLYREVGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       307 ~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      ...++.+++.++..+.+.+||.+  ++  +|..+
T Consensus       158 ~~p~~~~l~s~s~d~~i~~w~~~--~~--~~~~~  187 (345)
T 3fm0_A          158 WHPSQELLASASYDDTVKLYREE--ED--DWVCC  187 (345)
T ss_dssp             ECSSSSCEEEEETTSCEEEEEEE--TT--EEEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEEec--CC--CEEEE
Confidence            23356677777777789999999  88  77543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.16  E-value=0.086  Score=51.34  Aligned_cols=218  Identities=6%  Similarity=-0.058  Sum_probs=106.7

Q ss_pred             eEEEEeCCCCCccccC-CCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcc----cceec-cC-CCCCCCCCCeEEE
Q 046684           64 CCYVHNPVSDKWHVLS-LDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFT----RQFRY-LP-LLNVSRTNPAVGI  136 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~-~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t----~~w~~-lp-~~~~~~~~~~~~~  136 (373)
                      .+..++........+- ....+ ....+...++.||+....  ...++++++.+    ..-.. +. .+..+   .++++
T Consensus       387 ~I~~id~~~~~~~~~~~~~~~p-~gla~d~~~~~Ly~sD~~--~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glav  460 (699)
T 1n7d_A          387 EVRKMTLDRSEYTSLIPNLRNV-VALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAV  460 (699)
T ss_dssp             C-CEECTTSCCEECCSCCCTTC-CCCEEETTTTEEEECCTT--TTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEEC
T ss_pred             ceEEEeCCCCcceeeeccCcce-EEEccccccCeEEEEecC--CCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEE
Confidence            4445666555444331 11111 112233347889987653  45688888875    11111 11 11111   12222


Q ss_pred             EEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE--ECCEEEEE
Q 046684          137 VMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC--TRGMLYWI  214 (373)
Q Consensus       137 ~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~g~ly~~  214 (373)
                      -...         ++||+.-..          ...+.+++.....-+.+....        ......+++  .+|.|||.
T Consensus       461 D~~~---------g~LY~tD~~----------~~~I~v~d~dg~~~~~l~~~~--------~~~P~giavDp~~g~ly~t  513 (699)
T 1n7d_A          461 DWIH---------SNIYWTDSV----------LGTVSVADTKGVKRKTLFREQ--------GSKPRAIVVDPVHGFMYWT  513 (699)
T ss_dssp             CCSS---------SBCEECCTT----------TSCEEEEBSSSCCEEEECCCS--------SCCCCCEECCSSSSCCEEC
T ss_pred             EeeC---------CcEEEEecc----------CCeEEEEecCCCceEEEEeCC--------CCCcceEEEccCCCcEEEc
Confidence            1011         667775321          245788888765544332211        001122233  26889988


Q ss_pred             EcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          215 TSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       215 gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      .......|.++++....-+.+ ...... .-.+++.-  +++||++... ...+.+++++.    ..-..+......   
T Consensus       514 d~~~~~~I~~~~~dG~~~~~l-~~~~l~-~PnGlavd~~~~~LY~aD~~-~~~I~~~d~dG----~~~~~~~~~~~~---  583 (699)
T 1n7d_A          514 DWGTPAKIKKGGLNGVDIYSL-VTENIQ-WPNGITLDLLSGRLYWVDSK-LHSISSIDVNG----GNRKTILEDEKR---  583 (699)
T ss_dssp             CCSSSCCEEBCCSSSCCCCEE-SCSSCS-SCCCEEECTTTCCEEEEETT-TTEEEEECSSS----SCCEEECCCSSS---
T ss_pred             ccCCCCeEEEEeCCCCCeeEE-EeCCCC-CccEEEEeccCCEEEEEecC-CCeEEEEccCC----CceEEEEecCCc---
Confidence            422236788888875443333 111111 11234443  6889998643 22344444432    222222221110   


Q ss_pred             hhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          293 RLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                             ...+..++..++.||+.....+.|..+|+.  ++
T Consensus       584 -------~~~P~glavd~~~lywtd~~~~~V~~~d~~--~G  615 (699)
T 1n7d_A          584 -------LAHPFSLAVFEDKVFWTDIINEAIFSANRL--TG  615 (699)
T ss_dssp             -------CSSCCCCEEETTEEEEECSTTTCEEEEETT--TE
T ss_pred             -------CCCceEeEEECCEEEEEeCCCCeEEEEEcc--CC
Confidence                   011456666788999999777889999998  66

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.15  E-value=0.77  Score=44.39  Aligned_cols=116  Identities=13%  Similarity=0.188  Sum_probs=70.8

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCC--------CCCCeEEEEEcCCCCCCCCCceEEEEEeccC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVS--------RTNPAVGIVMEGPAQHGPFPNFRIYVAGGMS  159 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~  159 (373)
                      -...+|.||+...   ...++.+|+.|++  |+.-+..+..        ....+.++.+           ++||+.. .+
T Consensus        62 P~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~v~~-~d  126 (668)
T 1kv9_A           62 PLFHDGVIYTSMS---WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG-----------DKVYVGT-LD  126 (668)
T ss_dssp             CEEETTEEEEEEG---GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB-----------TEEEEEC-TT
T ss_pred             CEEECCEEEEECC---CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC-----------CEEEEEc-CC
Confidence            3467999999876   4679999998876  7653322211        0112233333           7777743 22


Q ss_pred             CCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCCc--
Q 046684          160 DEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESNT--  231 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~~--  231 (373)
                                ..+..+|.++++  |+.-..-+.     .........++.+|.+|+-.+.    ....+.+||+++++  
T Consensus       127 ----------g~l~alD~~tG~~~W~~~~~~~~-----~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          127 ----------GRLIALDAKTGKAIWSQQTTDPA-----KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             ----------SEEEEEETTTCCEEEEEECSCTT-----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             ----------CEEEEEECCCCCEeeeeccCCCC-----CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence                      368999998876  886543211     1112223446778999876322    24789999998774  


Q ss_pred             EEec
Q 046684          232 WREL  235 (373)
Q Consensus       232 w~~~  235 (373)
                      |+.-
T Consensus       192 W~~~  195 (668)
T 1kv9_A          192 WRFY  195 (668)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.14  E-value=0.48  Score=39.56  Aligned_cols=152  Identities=11%  Similarity=-0.049  Sum_probs=73.5

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      .+..|..........++++|+.+++...+......   ...... .+        +++.+++++ +          ..+.
T Consensus         9 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---v~~~~~-sp--------dg~~l~~~~-~----------~~i~   65 (297)
T 2ojh_A            9 HTRLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPEL---FEAPNW-SP--------DGKYLLLNS-E----------GLLY   65 (297)
T ss_dssp             ---------CCCCEEEEEEETTTTEEEEEEEESSC---CEEEEE-CT--------TSSEEEEEE-T----------TEEE
T ss_pred             eeeEeecCCCCcceeEEEEeCCCCceeeeccCCcc---eEeeEE-CC--------CCCEEEEEc-C----------CeEE
Confidence            34455544434467899999999887655432211   111122 11        144455443 2          3689


Q ss_pred             EEECCC-CceeeecCCCccccccceeccCCceEE-ECCEEEEEEcC---CceEEEEEECCCCcEEecccCCCCCCCceeE
Q 046684          174 MYDSRH-DAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSA---RAYSVIGFDIESNTWRELSAPMADRLEFATL  248 (373)
Q Consensus       174 ~yd~~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~---~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~  248 (373)
                      ++|..+ +....+...+       ........++ -+|+..+++..   ....|+.+|..+++...+ .....   ...+
T Consensus        66 ~~d~~~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~---~~~~  134 (297)
T 2ojh_A           66 RLSLAGDPSPEKVDTGF-------ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM-TKNLP---SYWH  134 (297)
T ss_dssp             EEESSSCCSCEECCCTT-------CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC-CSSSS---EEEE
T ss_pred             EEeCCCCCCceEecccc-------ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe-ecCCC---ccce
Confidence            999988 7766554331       0011112222 24554444332   357899999887776555 22211   1222


Q ss_pred             EE-ECCEEEEEEeecCCceEEEEeecCCCCCCeE
Q 046684          249 VS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWC  281 (373)
Q Consensus       249 ~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~  281 (373)
                      .. -+|+.+++.+.....+.+|.++.  .+....
T Consensus       135 ~~spdg~~l~~~~~~~~~~~l~~~~~--~~~~~~  166 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQVFDIYSMDI--DSGVET  166 (297)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEET--TTCCEE
T ss_pred             EECCCCCEEEEEECCCCceEEEEEEC--CCCcce
Confidence            22 25554443333334478999876  444443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.14  E-value=0.68  Score=41.30  Aligned_cols=104  Identities=12%  Similarity=0.075  Sum_probs=53.6

Q ss_pred             ceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCE-EEEEEcCCceEEEEEE
Q 046684          149 NFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGM-LYWITSARAYSVIGFD  226 (373)
Q Consensus       149 ~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~-ly~~gg~~~~~i~~yd  226 (373)
                      +++.++.|+.+          ..+.+||..++.-.......      +. .....+++. +|. +.+. +.....|..||
T Consensus       258 ~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~------~~-~~v~~~~~~~~~~~~l~~-g~~dg~i~vwd  319 (420)
T 3vl1_A          258 YGKYVIAGHVS----------GVITVHNVFSKEQTIQLPSK------FT-CSCNSLTVDGNNANYIYA-GYENGMLAQWD  319 (420)
T ss_dssp             TTEEEEEEETT----------SCEEEEETTTCCEEEEECCT------TS-SCEEEEEECSSCTTEEEE-EETTSEEEEEE
T ss_pred             CCCEEEEEcCC----------CeEEEEECCCCceeEEcccc------cC-CCceeEEEeCCCCCEEEE-EeCCCeEEEEE
Confidence            36677777554          35899998876522111110      00 001111222 344 4444 34567899999


Q ss_pred             CCCCcE--EecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          227 IESNTW--RELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       227 ~~~~~w--~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      +.+.+-  ..+  .......-..+...++++++.++ .+..+.+|++..
T Consensus       320 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~s~~-~d~~v~iw~~~~  365 (420)
T 3vl1_A          320 LRSPECPVGEF--LINEGTPINNVYFAAGALFVSSG-FDTSIKLDIISD  365 (420)
T ss_dssp             TTCTTSCSEEE--EESTTSCEEEEEEETTEEEEEET-TTEEEEEEEECC
T ss_pred             cCCCcCchhhh--hccCCCCceEEEeCCCCEEEEec-CCccEEEEeccC
Confidence            987542  222  11111222234445777666654 334589999875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.12  E-value=1  Score=43.17  Aligned_cols=198  Identities=14%  Similarity=-0.074  Sum_probs=102.7

Q ss_pred             eeEEEEeCCC------CCccccC-CCCCCCCceeEEeeCc-EEEEeeCCC-----CceEEEEEcCc-cc---ceeccCCC
Q 046684           63 LCCYVHNPVS------DKWHVLS-LDFLPYPVRPVSSIGS-FLLLRPINS-----TILQLVLCNPF-TR---QFRYLPLL  125 (373)
Q Consensus        63 ~~~~~~d~~~------~~w~~~~-~~~~~~~~~~~~~~~g-~l~~~gg~~-----~~~~~~v~np~-t~---~w~~lp~~  125 (373)
                      ..++.+|..+      .....+. .... ......-+-+| .|++.....     ....++++|.. ++   +.+.+..-
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            5778888877      4444443 2111 11111234455 454444221     23689999998 56   44443221


Q ss_pred             CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE
Q 046684          126 NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV  205 (373)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~  205 (373)
                      .  ... .......        +|+++|+.+..+     +   ...++++|..+++++.+.........|.........+
T Consensus       240 ~--~~~-~~~~~~s--------pdg~l~~~~~~~-----~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~  300 (662)
T 3azo_A          240 P--EEA-IAQAEWA--------PDGSLIVATDRT-----G---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFA  300 (662)
T ss_dssp             T--TBC-EEEEEEC--------TTSCEEEEECTT-----S---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEE
T ss_pred             C--Cce-EcceEEC--------CCCeEEEEECCC-----C---CeEEEEEECCCCceeecccccccccCccccccCceEe
Confidence            1  111 1111111        126677666432     1   3478999998888887765432111110001112334


Q ss_pred             EE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684          206 CT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       206 ~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      +. +|.+++.+......++.+|+.+++.+.+.  .+... ...+ ..-++.++++.........+|..+.  ++.+.+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~--~~g~~~~l  375 (662)
T 3azo_A          301 PLANGLIAVVHGKGAAVLGILDPESGELVDAA--GPWTE-WAATLTVSGTRAVGVAASPRTAYEVVELDT--VTGRARTI  375 (662)
T ss_dssp             ECTTSCEEEEEBSSSCEEEEEETTTTEEEECC--SSCCE-EEEEEEEETTEEEEEEEETTEEEEEEEEET--TTCCEEEE
T ss_pred             EeCCCEEEEEEEcCccEEEEEECCCCcEEEec--CCCCe-EEEEEecCCCEEEEEEcCCCCCCEEEEEEC--CCCceEEe
Confidence            43 67777775444557888899888877662  22111 1122 3346677777665554467888775  55677766


Q ss_pred             Ee
Q 046684          284 EK  285 (373)
Q Consensus       284 ~~  285 (373)
                      ..
T Consensus       376 ~~  377 (662)
T 3azo_A          376 GA  377 (662)
T ss_dssp             ES
T ss_pred             ec
Confidence            54

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=96.10  E-value=0.59  Score=40.21  Aligned_cols=111  Identities=12%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             cCCceEEEEEECCC-CcEEecccCCCCCCCceeEEEE--CC----EEEEEEeecCCceEEEEeecCCCCCCeEE--EEee
Q 046684          216 SARAYSVIGFDIES-NTWRELSAPMADRLEFATLVSR--NQ----KLTLIGGTCGGDACVWELSEGGDDDIWCL--IEKV  286 (373)
Q Consensus       216 g~~~~~i~~yd~~~-~~w~~~~~~~p~~~~~~~~~~~--~g----~l~~~gg~~~~~~~i~~~~~~~~~~~W~~--v~~~  286 (373)
                      +.....|..+|..+ ++|..+ ..+..+......+..  ++    .+++.+ ..+..+.+|+++.. ....|..  +...
T Consensus       185 gs~D~~v~lWd~~~~~~~~~~-~~l~~h~~~V~~v~~sp~~~~~~~~las~-s~D~~v~iw~~~~~-~~~~~~~~~~~~~  261 (316)
T 3bg1_A          185 GGCDNLIKLWKEEEDGQWKEE-QKLEAHSDWVRDVAWAPSIGLPTSTIASC-SQDGRVFIWTCDDA-SSNTWSPKLLHKF  261 (316)
T ss_dssp             CBTTSBCCEEEECTTSCEEEE-ECCBCCSSCEEEEECCCCSSCSCCEEEEE-ETTCEEEEEECSST-TCCCCBCCEEEEC
T ss_pred             ecCCCeEEEEEeCCCCcccee-eecccCCCceEEEEecCCCCCCCceEEEE-cCCCeEEEEEccCc-cccchhhhhhhcC
Confidence            44556677888764 456655 344333322222222  22    444444 44556899998651 1233421  2111


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccc
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCC  344 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~  344 (373)
                      ....            .......++.+++.++.++.+.+|+... .+  .|..+....
T Consensus       262 ~~~v------------~~v~~sp~g~~las~~~D~~v~lw~~~~-~g--~~~~~~~~~  304 (316)
T 3bg1_A          262 NDVV------------WHVSWSITANILAVSGGDNKVTLWKESV-DG--QWVCISDVN  304 (316)
T ss_dssp             SSCE------------EEEEECTTTCCEEEEESSSCEEEEEECT-TS--CEEEEEECC
T ss_pred             CCcE------------EEEEEcCCCCEEEEEcCCCeEEEEEECC-CC--cEEEeeecc
Confidence            1111            1222234566777777777899999752 46  788775543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.09  E-value=0.44  Score=41.09  Aligned_cols=106  Identities=8%  Similarity=-0.059  Sum_probs=51.7

Q ss_pred             CCceEEEEEECCC-Cc--EEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCC------CCCeEEEEe
Q 046684          217 ARAYSVIGFDIES-NT--WRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGD------DDIWCLIEK  285 (373)
Q Consensus       217 ~~~~~i~~yd~~~-~~--w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~------~~~W~~v~~  285 (373)
                      .....+..||+.+ ..  ....  ..+....-..+...  ++.++++++ .+..+.+|+++.  .      ..... +..
T Consensus       167 ~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~--~~~~~~~~~~~~-~~~  240 (342)
T 1yfq_A          167 MNNSQVQWFRLPLCEDDNGTIE--ESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDD--QGDDYNSSKRFA-FRC  240 (342)
T ss_dssp             ESTTEEEEEESSCCTTCCCEEE--ECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCT--TCCSTTCTTCEE-EEC
T ss_pred             eCCCeEEEEECCccccccceee--ecCCCCceeEEEECCCCCCEEEEEe-cCCcEEEEEEcC--CCccccccccee-eec
Confidence            4567899999987 33  2222  11111112233333  466666655 445589999976  3      11222 111


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .......   ..........+...++.+++.++..+.+.+||.+  ++
T Consensus       241 ~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~  283 (342)
T 1yfq_A          241 HRLNLKD---TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ--TR  283 (342)
T ss_dssp             CCCCTTC---CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT--TT
T ss_pred             ccccccc---cccceeEEEEEEcCCCCEEEEecCCceEEEEcCc--cH
Confidence            1100000   0000000122223356666777777789999999  77

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.09  E-value=0.57  Score=40.39  Aligned_cols=200  Identities=13%  Similarity=0.061  Sum_probs=101.2

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ..+|.+|+.+..  ...++++|+.+++.+.+.....  ... ..+..++        ++++|+.....      ......
T Consensus        53 ~~~g~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~~--~~~-~~i~~~~--------dg~l~v~~~~~------~~~~~~  113 (333)
T 2dg1_A           53 DRQGQLFLLDVF--EGNIFKINPETKEIKRPFVSHK--ANP-AAIKIHK--------DGRLFVCYLGD------FKSTGG  113 (333)
T ss_dssp             CTTSCEEEEETT--TCEEEEECTTTCCEEEEEECSS--SSE-EEEEECT--------TSCEEEEECTT------SSSCCE
T ss_pred             CCCCCEEEEECC--CCEEEEEeCCCCcEEEEeeCCC--CCc-ceEEECC--------CCcEEEEeCCC------CCCCce
Confidence            346778876643  4579999999988766431111  111 2222221        16677765221      111246


Q ss_pred             EEEEECCCCceeee-cCCCccccccceeccCCceEEE--CCEEEEEEcC-----CceEEEEEECCCCcEEecccCCCCCC
Q 046684          172 VEMYDSRHDAWQII-GSMPVEFAVRLTVWTPNESVCT--RGMLYWITSA-----RAYSVIGFDIESNTWRELSAPMADRL  243 (373)
Q Consensus       172 ~~~yd~~~~~W~~~-~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~-----~~~~i~~yd~~~~~w~~~~~~~p~~~  243 (373)
                      +.+||..++.-+.+ .....       . .....+.+  +|.+|+....     ....++.+|+++++...+ ... . .
T Consensus       114 i~~~d~~~~~~~~~~~~~~~-------~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~-~  182 (333)
T 2dg1_A          114 IFAATENGDNLQDIIEDLST-------A-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQN-I-S  182 (333)
T ss_dssp             EEEECTTSCSCEEEECSSSS-------C-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEE-E-S
T ss_pred             EEEEeCCCCEEEEEEccCcc-------C-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecC-C-C
Confidence            89999988775532 21110       0 01111222  5788876421     146899999988777655 111 0 1


Q ss_pred             CceeEEE-ECCE-EEEEEeecCCceEEEEeecCCCCCCeEEEE-eechhhhhhhcCCCCCCCce-EEEecCCEEEEEEcC
Q 046684          244 EFATLVS-RNQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIE-KVPIEMGMRLSGGKASWGGT-RCAAGNGAICLYREV  319 (373)
Q Consensus       244 ~~~~~~~-~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~-~~p~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~  319 (373)
                      ....++. -+|+ ||+... ....+.+|+++.  +......+. ...... .   +.   ..+. .++..++.||+....
T Consensus       183 ~~~~i~~~~dg~~l~v~~~-~~~~i~~~d~~~--~g~~~~~~~~~~~~~~-~---~~---~~~~~i~~d~~G~l~v~~~~  252 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTET-TANRLHRIALED--DGVTIQPFGATIPYYF-T---GH---EGPDSCCIDSDDNLYVAMYG  252 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEG-GGTEEEEEEECT--TSSSEEEEEEEEEEEC-C---SS---SEEEEEEEBTTCCEEEEEET
T ss_pred             cccceEECCCCCEEEEEeC-CCCeEEEEEecC--CCcCcccccceEEEec-C---CC---CCCCceEECCCCCEEEEEcC
Confidence            1122332 2454 776643 233467777753  223333221 111000 0   00   0012 333346788887766


Q ss_pred             CccEEEEEccccCC
Q 046684          320 GLGMIIWREDEDKR  333 (373)
Q Consensus       320 ~~~~~~yd~~~~~~  333 (373)
                      .+.+.+||++  .+
T Consensus       253 ~~~v~~~d~~--g~  264 (333)
T 2dg1_A          253 QGRVLVFNKR--GY  264 (333)
T ss_dssp             TTEEEEECTT--SC
T ss_pred             CCEEEEECCC--CC
Confidence            6679999997  65

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.06  E-value=0.015  Score=51.94  Aligned_cols=186  Identities=9%  Similarity=-0.005  Sum_probs=81.7

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT  167 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~  167 (373)
                      .+..++.||+.+.   ...++.+|+.|++  |+.-.  ....  ....+.+           +++|+.+..+        
T Consensus         5 P~v~~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~--~~~~--s~p~~~~-----------g~~~v~~s~d--------   58 (369)
T 2hz6_A            5 VTLPETLLFVSTL---DGSLHAVSKRTGSIKWTLKE--DPVL--QVPTHVE-----------EPAFLPDPND--------   58 (369)
T ss_dssp             ---CTTEEEEEET---TSEEEEEETTTCCEEEEEEC--CCSC--CCC----------------CCEEECTTT--------
T ss_pred             CeeeCCEEEEEcC---CCEEEEEECCCCCEEEEecC--CCce--ecceEcC-----------CCEEEEeCCC--------
Confidence            3456888988776   4689999999886  54322  1111  1111222           6677765433        


Q ss_pred             ccceEEEEECCCC--ceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECCCCc--EEecccCCCCC
Q 046684          168 YESMVEMYDSRHD--AWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIESNT--WRELSAPMADR  242 (373)
Q Consensus       168 ~~~~~~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~~~~--w~~~~~~~p~~  242 (373)
                        ..++.+|.+++  .|+.-...+.       .. ....+. .++.+|+-  .....+.++|+++++  |+.- ...  .
T Consensus        59 --g~l~a~d~~tG~~~w~~~~~~~~-------~~-~~sp~~~~~~~v~~g--~~dg~v~a~D~~tG~~~w~~~-~~~--~  123 (369)
T 2hz6_A           59 --GSLYTLGSKNNEGLTKLPFTIPE-------LV-QASPCRSSDGILYMG--KKQDIWYVIDLLTGEKQQTLS-SAF--A  123 (369)
T ss_dssp             --CCEEEC-----CCSEECSCCHHH-------HH-TTCSCC-----CCCC--EEEEEEEEECCC----------------
T ss_pred             --CEEEEEECCCCceeeeeeccCcc-------cc-ccCceEecCCEEEEE--eCCCEEEEEECCCCcEEEEec-CCC--c
Confidence              35888888665  4654322211       01 111122 46666653  235679999998764  5533 111  0


Q ss_pred             CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe---cCCEEEEEEcC
Q 046684          243 LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA---GNGAICLYREV  319 (373)
Q Consensus       243 ~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~  319 (373)
                         ...+-.++.||+... + ..+..|+.+.  .+..|+.-..-.    .          ...+..   .++.+|+ +..
T Consensus       124 ---~~~~p~~~~v~~~~~-d-g~v~a~d~~t--G~~~W~~~~~~~----~----------~~~~~~~~~~~~~v~~-~~~  181 (369)
T 2hz6_A          124 ---DSLSPSTSLLYLGRT-E-YTITMYDTKT--RELRWNATYFDY----A----------ASLPEDDVDYKMSHFV-SNG  181 (369)
T ss_dssp             ------------EEEEEE-E-EEEECCCSSS--SSCCCEEEEEEE----C----------CBCCCCCTTCCCCEEE-EET
T ss_pred             ---ccccccCCEEEEEec-C-CEEEEEECCC--CCEEEeEecccc----c----------CccccCCccccceEEE-ECC
Confidence               011113455555432 2 2255666655  445687642210    0          011111   2356665 444


Q ss_pred             CccEEEEEccccCCcccEEEe
Q 046684          320 GLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       320 ~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      .+.+.++|.+  +++..|+.-
T Consensus       182 dg~v~a~d~~--tG~~~W~~~  200 (369)
T 2hz6_A          182 DGLVVTVDSE--SGDVLWIQN  200 (369)
T ss_dssp             SCEEEEECTT--TCCEEEEEE
T ss_pred             CCEEEEEECC--CCcEEEEec
Confidence            5679999998  887678754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.05  E-value=0.99  Score=42.71  Aligned_cols=117  Identities=13%  Similarity=0.148  Sum_probs=69.1

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcC-cccc--eeccCCCCCC--------CCCCeEEEEEcCCCCCCCCCceEEEEEecc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNP-FTRQ--FRYLPLLNVS--------RTNPAVGIVMEGPAQHGPFPNFRIYVAGGM  158 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np-~t~~--w~~lp~~~~~--------~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~  158 (373)
                      -...+|.||+....  ...++.+|+ .|++  |+.-......        ....+.++.+           ++||+....
T Consensus        58 P~v~~g~vyv~~~~--~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~v~~~d  124 (571)
T 2ad6_A           58 PLVIGDMMYVHSAF--PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGA-----------GQIVKKQAN  124 (571)
T ss_dssp             CEEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEET-----------TEEEEECTT
T ss_pred             cEEECCEEEEEeCC--CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEEC-----------CEEEEEeCC
Confidence            34579999997752  256899999 8876  7653322110        0111233332           788875422


Q ss_pred             CCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCC--
Q 046684          159 SDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESN--  230 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~--  230 (373)
                                 ..+..+|.++++  |+.-..-+.     .......+.++.+|.+|+....    ....+.+||++++  
T Consensus       125 -----------g~l~alD~~tG~~~W~~~~~~~~-----~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  188 (571)
T 2ad6_A          125 -----------GHLLALDAKTGKINWEVEVCDPK-----VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             -----------SEEEEEETTTCCEEEEEECCCGG-----GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             -----------CEEEEEECCCCCEEEEecCCCCC-----ccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence                       368999998875  875432210     0011223446679999876421    1578999999876  


Q ss_pred             cEEec
Q 046684          231 TWREL  235 (373)
Q Consensus       231 ~w~~~  235 (373)
                      .|+.-
T Consensus       189 ~W~~~  193 (571)
T 2ad6_A          189 KWRAF  193 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            47654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.05  E-value=0.83  Score=43.47  Aligned_cols=121  Identities=10%  Similarity=0.054  Sum_probs=67.8

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcC-cccc--eeccCCCCCC--------CCCCeEEE--EEcCCCCCCCCCceEEEEEe
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNP-FTRQ--FRYLPLLNVS--------RTNPAVGI--VMEGPAQHGPFPNFRIYVAG  156 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np-~t~~--w~~lp~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~kl~~~g  156 (373)
                      -...+|.||+....  ...++.+|. .|++  |+.-+.....        ......++  .+ + ...     .+||+..
T Consensus        58 P~v~~g~vyv~~~~--~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~-g-~~~-----~rV~v~t  128 (599)
T 1w6s_A           58 PLVVDGKMYIHTSF--PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD-G-KTP-----ALILKTQ  128 (599)
T ss_dssp             CEEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC-S-SSC-----CEEEEEC
T ss_pred             cEEECCEEEEEeCC--CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecC-C-cce-----eEEEEEc
Confidence            44569999997752  256899999 8876  7653332210        01112222  12 0 000     2377643


Q ss_pred             ccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCC
Q 046684          157 GMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESN  230 (373)
Q Consensus       157 g~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~  230 (373)
                      . +          ..+..+|.++++  |+.-..-+.     .......+.++.+|.+|+-.+.    ....|.+||.+++
T Consensus       129 ~-d----------g~l~AlDa~TG~~~W~~~~~~~~-----~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG  192 (599)
T 1w6s_A          129 L-D----------GNVAALNAETGETVWKVENSDIK-----VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTG  192 (599)
T ss_dssp             T-T----------SEEEEEETTTCCEEEEEECCCGG-----GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTC
T ss_pred             C-C----------CEEEEEECCCCCEEEeecCCCCC-----ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCC
Confidence            2 1          368899988876  875432210     0011223446689998875321    2578999999976


Q ss_pred             c--EEec
Q 046684          231 T--WREL  235 (373)
Q Consensus       231 ~--w~~~  235 (373)
                      +  |+.-
T Consensus       193 ~~~W~~~  199 (599)
T 1w6s_A          193 EQVWRAY  199 (599)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEc
Confidence            4  7654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.00  E-value=0.32  Score=46.77  Aligned_cols=145  Identities=7%  Similarity=-0.037  Sum_probs=76.9

Q ss_pred             cceEEEEECC-CCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCC-ceEEEEEECCCCcEEecccCCCCCCC-
Q 046684          169 ESMVEMYDSR-HDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSAR-AYSVIGFDIESNTWRELSAPMADRLE-  244 (373)
Q Consensus       169 ~~~~~~yd~~-~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~-~~~i~~yd~~~~~w~~~~~~~p~~~~-  244 (373)
                      ...++++|.. ++++.....+...    . .......++ -+|++|+.+... ...|+.+|++++++..+ .+...... 
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~~----~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~  289 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLGG----P-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL-CRREEEFAG  289 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEEE----T-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES-SCCSSBSSC
T ss_pred             CcEEEEEEECCCCcccccEEeCCC----C-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec-ccccccccC
Confidence            3579999998 5633332222100    0 001111222 268888775322 23799999988888877 44322110 


Q ss_pred             ------ceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE-EecCCEEEEE
Q 046684          245 ------FATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC-AAGNGAICLY  316 (373)
Q Consensus       245 ------~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~  316 (373)
                            ...++.. ++++++....  ....+|.++.  ++...+.   +......          ...+ ...++.+++.
T Consensus       290 p~w~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~d~--~~~~~~~---l~~~~~~----------~~~~~s~~~~~~~~~  352 (662)
T 3azo_A          290 PLWTPGMRWFAPLANGLIAVVHGK--GAAVLGILDP--ESGELVD---AAGPWTE----------WAATLTVSGTRAVGV  352 (662)
T ss_dssp             CCCSTTCCSEEECTTSCEEEEEBS--SSCEEEEEET--TTTEEEE---CCSSCCE----------EEEEEEEETTEEEEE
T ss_pred             ccccccCceEeEeCCCEEEEEEEc--CccEEEEEEC--CCCcEEE---ecCCCCe----------EEEEEecCCCEEEEE
Confidence                  1233333 6777777654  4468998775  4444333   3221100          1222 3456777666


Q ss_pred             EcCC---ccEEEEEccccCCcccEEEe
Q 046684          317 REVG---LGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       317 ~~~~---~~~~~yd~~~~~~~~~W~~~  340 (373)
                      ....   ..++.+|++  ++  +.+.+
T Consensus       353 ~~~~~~~~~i~~~d~~--~g--~~~~l  375 (662)
T 3azo_A          353 AASPRTAYEVVELDTV--TG--RARTI  375 (662)
T ss_dssp             EEETTEEEEEEEEETT--TC--CEEEE
T ss_pred             EcCCCCCCEEEEEECC--CC--ceEEe
Confidence            5332   368888988  87  66655

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.99  E-value=1.1  Score=44.09  Aligned_cols=228  Identities=11%  Similarity=0.067  Sum_probs=114.8

Q ss_pred             eEEEEeCCCCCccccCCCCCC---CCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCC-CCCCCCCCeEEEEEc
Q 046684           64 CCYVHNPVSDKWHVLSLDFLP---YPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPL-LNVSRTNPAVGIVME  139 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~~~~~~---~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~-~~~~~~~~~~~~~~~  139 (373)
                      .+..||+.+++...+......   .-.......+|.|++...    ..+++||+.++++..++. .+.... ........
T Consensus       108 Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~----~gl~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~  182 (795)
T 4a2l_A          108 GLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTP----EGLIMFDIKESKFIDDSFSTAMHKT-IASTLYRQ  182 (795)
T ss_dssp             CEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEET----TEEEEEETTTTEEECSSSCHHHHTC-CEEEEEEE
T ss_pred             chheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEEC----CceEEEECCCCEEEeccCCCCCCcc-eEEEEECC
Confidence            455677777666544221110   011123345788887654    468999999988876543 111110 11222221


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCC
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSAR  218 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~  218 (373)
                      .         +++++.. ..          ..+..||..+++++.....+.       ......... -+|.+++..  .
T Consensus       183 ~---------g~lwigt-~~----------~Gl~~~~~~~~~~~~~~~~~~-------~~~i~~i~~d~~g~lwigt--~  233 (795)
T 4a2l_A          183 G---------DQIYIGT-ST----------DGLYTYSITQKTFEKVIPILG-------TKQIQAILQQSPTRIWVAT--E  233 (795)
T ss_dssp             T---------TEEEEEE-SS----------SCEEEEETTTCCEEECC-----------CCCEEEEEEEETTEEEEEE--B
T ss_pred             C---------CCEEEEE-CC----------CCEEEEeCCCCeEEEecCCCC-------CCeeEEEEEcCCCCEEEEE--C
Confidence            1         6787732 21          247899999988876643210       000111121 356666542  2


Q ss_pred             ceEEEEEECCCCcEEecccCC--CCCC--C-ceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          219 AYSVIGFDIESNTWRELSAPM--ADRL--E-FATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~--p~~~--~-~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      ...+..||+.++++.......  +...  . -..+..- +|.|++.. . . .+.+|+.+.    ..+......+.... 
T Consensus       234 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-~-Gl~~~~~~~----~~~~~~~~~~~~~~-  305 (795)
T 4a2l_A          234 GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-F-N-DLNIYHEGT----DSFASYSSNPVENG-  305 (795)
T ss_dssp             SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-S-S-CEEEEETTT----TEEEEECCCTTSTT-
T ss_pred             CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-C-C-hhheEcCCC----CeEEEEecCCCCCC-
Confidence            346999999999888762221  1111  1 1223332 66777654 2 2 456666543    77766543321110 


Q ss_pred             hhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEec
Q 046684          293 RLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~  341 (373)
                      .+...   .....+...++.|++ |...+.+..||+.  ++  .++...
T Consensus       306 ~l~~~---~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~--~~--~~~~~~  346 (795)
T 4a2l_A          306 SLSQR---SVRSIFMDSQGGMWL-GTYFGGLNYYHPI--RN--RFKNIR  346 (795)
T ss_dssp             SCSSS---CEEEEEECTTSCEEE-EESSSCEEEECGG--GG--SSEEEC
T ss_pred             CCCCC---cEEEEEEeCCcCEEE-EECCCCeEEeCCC--cc--cceEEc
Confidence            00000   001222334677777 4344578999988  77  666554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.44  Score=41.51  Aligned_cols=205  Identities=11%  Similarity=0.039  Sum_probs=97.4

Q ss_pred             eeEEeeCcEEEEeeCCCCceEEEEEcCccccee-ccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684           88 RPVSSIGSFLLLRPINSTILQLVLCNPFTRQFR-YLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA  166 (373)
Q Consensus        88 ~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~  166 (373)
                      ...++.++.+.+...   ...+.+||..+++.. .... ..  ......+...+.. +     ++.++.|+.+       
T Consensus        88 ~~s~s~D~~i~~w~~---~~~~~~~~~~~~~~~~~~~~-~~--~~~v~~~~~~~~~-~-----~~~l~s~s~d-------  148 (343)
T 3lrv_A           88 IISRGPCNRLLLLYP---GNQITILDSKTNKVLREIEV-DS--ANEIIYMYGHNEV-N-----TEYFIWADNR-------  148 (343)
T ss_dssp             EEEECSTTEEEEEET---TTEEEEEETTTCCEEEEEEC-CC--SSCEEEEECCC---------CCEEEEEETT-------
T ss_pred             eEEecCCCeEEEEEc---cCceEEeecCCcceeEEeec-CC--CCCEEEEEcCCCC-C-----CCEEEEEeCC-------
Confidence            344555677776655   356677787776622 2111 11  1111222211100 1     5566666654       


Q ss_pred             cccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEE--ecccCCCCCC
Q 046684          167 TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWR--ELSAPMADRL  243 (373)
Q Consensus       167 ~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~--~~~~~~p~~~  243 (373)
                         ..+.+||.++++-.......       .......+++. +|.+.+. |.....|..||+.+++-.  .+  ... +.
T Consensus       149 ---g~i~~wd~~~~~~~~~~~~~-------~~~~i~~~~~~pdg~~las-g~~dg~i~iwd~~~~~~~~~~~--~~~-h~  214 (343)
T 3lrv_A          149 ---GTIGFQSYEDDSQYIVHSAK-------SDVEYSSGVLHKDSLLLAL-YSPDGILDVYNLSSPDQASSRF--PVD-EE  214 (343)
T ss_dssp             ---CCEEEEESSSSCEEEEECCC-------SSCCCCEEEECTTSCEEEE-ECTTSCEEEEESSCTTSCCEEC--CCC-TT
T ss_pred             ---CcEEEEECCCCcEEEEEecC-------CCCceEEEEECCCCCEEEE-EcCCCEEEEEECCCCCCCccEE--ecc-CC
Confidence               46889999877653322211       01011222332 4666666 456778999999887543  22  111 11


Q ss_pred             CceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC-C
Q 046684          244 EFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV-G  320 (373)
Q Consensus       244 ~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  320 (373)
                      .....+..  +|..++.++ ++ .+.+|++..  ..... .+..+.......       .....+...++..++.++. .
T Consensus       215 ~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~--~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          215 AKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRK--DVGTL-AYPTYTIPEFKT-------GTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             SCEEEEEECTTSSEEEEEE-SS-BEEEEETTS--STTCB-SSCCCBC------------CCEEEEECTTSSEEEEEETTT
T ss_pred             CCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCC--CCcce-eecccccccccc-------cceEEEECCCCCEEEEecCCC
Confidence            22222222  566666655 44 789999975  11111 011110000000       0001333335555555444 6


Q ss_pred             ccEEEEEccccCCcccEEE
Q 046684          321 LGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       321 ~~~~~yd~~~~~~~~~W~~  339 (373)
                      +.+.+|+.+...+  .|..
T Consensus       283 ~~i~v~~~~~~~~--~~~~  299 (343)
T 3lrv_A          283 NSLTIYKFDKKTK--NWTK  299 (343)
T ss_dssp             TEEEEEEECTTTC--SEEE
T ss_pred             CcEEEEEEccccc--ceEe
Confidence            6788888862255  7886

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.96  E-value=0.038  Score=48.93  Aligned_cols=236  Identities=10%  Similarity=-0.035  Sum_probs=95.6

Q ss_pred             eEEEEeCCCCCccccCCCC-CCCCceeEE-eeCcEEEEeeCCCCceEEEEEcCcccc-eeccCCCCCCCCCCeEEEEEcC
Q 046684           64 CCYVHNPVSDKWHVLSLDF-LPYPVRPVS-SIGSFLLLRPINSTILQLVLCNPFTRQ-FRYLPLLNVSRTNPAVGIVMEG  140 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~~~~-~~~~~~~~~-~~~g~l~~~gg~~~~~~~~v~np~t~~-w~~lp~~~~~~~~~~~~~~~~~  140 (373)
                      .+..||..++.|..+.... ....-.+++ +.+|..++.++.  ...+.+||..+++ +..+..+.....  .+..+...
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--d~~v~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~  109 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ--DRNAYVYEKRPDGTWKQTLVLLRLNR--AATFVRWS  109 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET--TSSEEEC------CCCCEEECCCCSS--CEEEEECC
T ss_pred             EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEecccCC--ceEEEEEC
Confidence            4455777766554442222 122222233 234444444432  4679999999887 443322222111  12222211


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc-eeeecCCCccccccceeccCCceEEE-CCEEEEEEcCC
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA-WQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSAR  218 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~  218 (373)
                             ++++.++.|+.+          ..+.+||..+++ |.....+..+     ....-..+++. ++.+.+.+ ..
T Consensus       110 -------~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~~~-~~  166 (377)
T 3dwl_C          110 -------PNEDKFAVGSGA----------RVISVCYFEQENDWWVSKHLKRP-----LRSTILSLDWHPNNVLLAAG-CA  166 (377)
T ss_dssp             -------TTSSCCEEEESS----------SCEEECCC-----CCCCEEECSS-----CCSCEEEEEECTTSSEEEEE-ES
T ss_pred             -------CCCCEEEEEecC----------CeEEEEEECCcccceeeeEeecc-----cCCCeEEEEEcCCCCEEEEE-eC
Confidence                   114455556543          357888887654 4333222100     00011111222 45555554 34


Q ss_pred             ceEEEEEECCCCcEEecc---------------cCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeE
Q 046684          219 AYSVIGFDIESNTWRELS---------------APMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWC  281 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~---------------~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~  281 (373)
                      ...+..||+.+.+....+               ..+ ........+..  +|++++.++ .+..+.+|++..  ......
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~~~--~~~~~~  242 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPSA--PEQPPR  242 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEECS--TTSCEE
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe-CCCcEEEEECCC--CCCcce
Confidence            567888888643321110               111 11111222222  566555554 444588999976  222222


Q ss_pred             EEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccc
Q 046684          282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCC  344 (373)
Q Consensus       282 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~  344 (373)
                      .+..+.....         .........++.+++.+. .+.+.+|+..  ..  .|+....+.
T Consensus       243 ~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~-~~~~~~~~~~--~~--~~~~~~~~~  291 (377)
T 3dwl_C          243 ALITVKLSQL---------PLRSLLWANESAIVAAGY-NYSPILLQGN--ES--GWAHTRDLD  291 (377)
T ss_dssp             ECCCEECSSS---------CEEEEEEEETTEEEEEES-SSSEEEECCC--C-----CCSBCCC
T ss_pred             eeEeecCCCC---------ceEEEEEcCCCCEEEEEc-CCcEEEEEeC--CC--ceEEEeeec
Confidence            2222221110         001223334666666554 4567799888  77  776555443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.95  E-value=0.2  Score=45.17  Aligned_cols=146  Identities=12%  Similarity=0.061  Sum_probs=74.7

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      +.+++|-+..    .+.+++||..|++...+-.+......... +...+        +++.++.|+.+          ..
T Consensus       114 S~~n~lAvgl----d~tV~lWd~~tg~~~~~~~~~~~~~~V~s-v~fsp--------dg~~lasgs~D----------g~  170 (420)
T 4gga_A          114 SSGNVLAVAL----DNSVYLWSASSGDILQLLQMEQPGEYISS-VAWIK--------EGNYLAVGTSS----------AE  170 (420)
T ss_dssp             CTTSEEEEEE----TTEEEEEETTTCCEEEEEECCSTTCCEEE-EEECT--------TSSEEEEEETT----------SC
T ss_pred             CCCCEEEEEe----CCEEEEEECCCCCEEEEEEecCCCCcEEE-EEECC--------CCCEEEEEECC----------Ce
Confidence            3466554433    36899999999987654333222221122 22211        15667777654          46


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCC-CceeEEE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL-EFATLVS  250 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~-~~~~~~~  250 (373)
                      +.+||..+++-......       +  .........++.+.+.| .....+..+|.........  .+.... ....+..
T Consensus       171 v~iWd~~~~~~~~~~~~-------h--~~~v~~~s~~~~~l~sg-s~d~~i~~~d~~~~~~~~~--~~~~h~~~~~~~~~  238 (420)
T 4gga_A          171 VQLWDVQQQKRLRNMTS-------H--SARVGSLSWNSYILSSG-SRSGHIHHHDVRVAEHHVA--TLSGHSQEVCGLRW  238 (420)
T ss_dssp             EEEEETTTTEEEEEECC-------C--SSCEEEEEEETTEEEEE-ETTSEEEEEETTSSSCEEE--EEECCSSCEEEEEE
T ss_pred             EEEEEcCCCcEEEEEeC-------C--CCceEEEeeCCCEEEEE-eCCCceeEeeecccceeeE--Eecccccceeeeee
Confidence            89999887653211111       0  01112244566665554 4566788888776543322  111111 1112222


Q ss_pred             -ECCEEEEEEeecCCceEEEEeec
Q 046684          251 -RNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       251 -~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                       .+|...+.++ .+..+.+|+...
T Consensus       239 ~~~g~~l~s~~-~D~~v~i~~~~~  261 (420)
T 4gga_A          239 APDGRHLASGG-NDNLVNVWPSAP  261 (420)
T ss_dssp             CTTSSEEEEEE-TTSCEEEEESSC
T ss_pred             cCCCCeeeeee-ccccceEEeecc
Confidence             2555555554 344578998875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.94  E-value=0.49  Score=41.56  Aligned_cols=105  Identities=10%  Similarity=0.032  Sum_probs=56.6

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      |.+.+.| .....+..+|+.+++.... ..  .+......+..  ++.+++.++. +..+.+|++..    .  ..+..+
T Consensus       210 g~~l~sg-s~Dg~v~~wd~~~~~~~~~-~~--~h~~~v~~v~~~p~~~~l~s~s~-D~~v~lwd~~~----~--~~~~~~  278 (354)
T 2pbi_B          210 GNTFVSG-GCDKKAMVWDMRSGQCVQA-FE--THESDVNSVRYYPSGDAFASGSD-DATCRLYDLRA----D--REVAIY  278 (354)
T ss_dssp             CCEEEEE-ETTSCEEEEETTTCCEEEE-EC--CCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT----T--EEEEEE
T ss_pred             CCEEEEE-eCCCeEEEEECCCCcEEEE-ec--CCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEECCC----C--cEEEEE
Confidence            4455553 4567799999988765433 11  11122222222  5666666554 44579999865    3  222222


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ......       .......+..++.+++.++..+.+.+||..  ++
T Consensus       279 ~~~~~~-------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~--~~  316 (354)
T 2pbi_B          279 SKESII-------FGASSVDFSLSGRLLFAGYNDYTINVWDVL--KG  316 (354)
T ss_dssp             CCTTCC-------SCEEEEEECTTSSEEEEEETTSCEEEEETT--TC
T ss_pred             cCCCcc-------cceeEEEEeCCCCEEEEEECCCcEEEEECC--CC
Confidence            211100       000122333467777778777889999998  66

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=95.92  E-value=0.6  Score=43.89  Aligned_cols=245  Identities=9%  Similarity=-0.001  Sum_probs=113.2

Q ss_pred             eeEEEEeCCCCCccc-cCCCCCCCCceeE-Eee-CcEEEEeeCCCCceEEEEEcC--cccceeccCCCCCCCCCCeEEEE
Q 046684           63 LCCYVHNPVSDKWHV-LSLDFLPYPVRPV-SSI-GSFLLLRPINSTILQLVLCNP--FTRQFRYLPLLNVSRTNPAVGIV  137 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~-~~~-~g~l~~~gg~~~~~~~~v~np--~t~~w~~lp~~~~~~~~~~~~~~  137 (373)
                      ..+.++|..+.+... ++...   ..+.+ .+- +..+|+.+.   ...+.+||+  .|.+...  .++.......++ +
T Consensus       159 ~~V~v~D~~t~~~~~~i~~g~---~~~~v~~spdg~~l~v~~~---d~~V~v~D~~~~t~~~~~--~i~~g~~p~~va-~  229 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDTGY---AVHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVA--EIKIGIEARSVE-S  229 (543)
T ss_dssp             TEEEEEETTTCCEEEEEECST---TEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEE--EEECCSEEEEEE-E
T ss_pred             CeEEEEECCCceEEEEEecCc---ccceEEECCCCCEEEEECC---CCeEEEEECcCCCCcEEE--EEecCCCcceEE-e
Confidence            466678988765432 22111   12333 333 456777665   378999999  6655322  222211111222 2


Q ss_pred             EcCC-CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCC-ccccc-cceeccCCceEEE---CCEE
Q 046684          138 MEGP-AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMP-VEFAV-RLTVWTPNESVCT---RGML  211 (373)
Q Consensus       138 ~~~~-~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~~~~-~~~~~~~~~~~~~---~g~l  211 (373)
                       .+. +.+    +..+|+....          ...+.++|..+.+=...-..+ ..... ..........+..   ++.+
T Consensus       230 -sp~~~~d----g~~l~v~~~~----------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          230 -SKFKGYE----DRYTIAGAYW----------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             -CCSTTCT----TTEEEEEEEE----------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             -CCCcCCC----CCEEEEEEcc----------CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence             210 001    0456654422          246788898776532211110 00000 0000001111222   3444


Q ss_pred             EEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684          212 YWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       212 y~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~  290 (373)
                      |+. ......|..+|..+.+-..+ ...+....-..+ ..-+|+.+++.......+.+|++++    .  +.+..++...
T Consensus       295 ~vs-~~~~g~i~vvd~~~~~~l~~-~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t----g--~l~~~i~~g~  366 (543)
T 1nir_A          295 IVN-VKETGKVLLVNYKDIDNLTV-TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD----R--RLSALVDVGK  366 (543)
T ss_dssp             EEE-ETTTTEEEEEECTTSSSCEE-EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT----T--EEEEEEECSS
T ss_pred             EEE-ECCCCeEEEEEecCCCccee-EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC----C--eEEEeeccCC
Confidence            444 45677899999886532111 011111111122 2336665555544455588888865    4  3444444221


Q ss_pred             hhhhcCCCCCCCceEEEe-cCCEEEEEEc-CCccEEEEEccccCC---cccEEEecccccCC
Q 046684          291 GMRLSGGKASWGGTRCAA-GNGAICLYRE-VGLGMIIWREDEDKR---KWEWVWVGGCCLTG  347 (373)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-~~~~~~~yd~~~~~~---~~~W~~~~~~~~~~  347 (373)
                      ..+  ++    +...++. .++.+|+.+. ..+.|.++|.+  +.   +-.|+.+..++..+
T Consensus       367 ~ph--~g----~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~--~~~~~~~~~~~v~~l~~~g  420 (543)
T 1nir_A          367 TPH--PG----RGANFVHPKYGPVWSTSHLGDGSISLIGTD--PKNHPQYAWKKVAELQGQG  420 (543)
T ss_dssp             SBC--CT----TCEEEEETTTEEEEEEEBSSSSEEEEEECC--TTTCTTTBTSEEEEEECSC
T ss_pred             CCC--CC----CCcccCCCCCccEEEeccCCCceEEEEEeC--CCCCchhcCeEEEEEEcCC
Confidence            111  00    1233333 3578888775 45679999998  52   00277776665443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.84  E-value=0.73  Score=39.14  Aligned_cols=115  Identities=10%  Similarity=0.108  Sum_probs=58.0

Q ss_pred             EEEEEEcCCceEEEEEECCCCc--EEecccCCCCCCCceeEEEE--C---CEEEEEEeecCCceEEEEeecCCCCCCeEE
Q 046684          210 MLYWITSARAYSVIGFDIESNT--WRELSAPMADRLEFATLVSR--N---QKLTLIGGTCGGDACVWELSEGGDDDIWCL  282 (373)
Q Consensus       210 ~ly~~gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~~~~~~~~--~---g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~  282 (373)
                      .+.+.+ .....|..+|..+++  +... ..+..+......+..  +   +.+++. +..+..+.+|+++.  ....|..
T Consensus       171 ~~l~sg-s~D~~v~lwd~~~~~~~~~~~-~~l~~H~~~V~~v~~sp~~~~~~~las-~s~D~~v~iWd~~~--~~~~~~~  245 (297)
T 2pm7_B          171 RKFVTG-GADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYMAS-VSQDRTCIIWTQDN--EQGPWKK  245 (297)
T ss_dssp             CEEEEE-ETTSCEEEEEEETTTTEEEEE-EEECCCSSCEEEEEECCCCSSSEEEEE-EETTSCEEEEEESS--TTSCCEE
T ss_pred             ceEEEE-cCCCcEEEEEEcCCCceEEEE-EEecCCCCceEEEEECCCCCCceEEEE-EECCCcEEEEEeCC--CCCccce
Confidence            444443 345567777776543  5443 233333222222332  2   244444 44555589999976  4445654


Q ss_pred             EEeechhhhhhhcCCCCCCCceEE-EecCCEEEEEEcCCccEEEEEccccCCcccEEEec
Q 046684          283 IEKVPIEMGMRLSGGKASWGGTRC-AAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       283 v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~  341 (373)
                      ... .....    ..   . ...+ ...++.+++.++..+.+.+|+... .+  .|..+.
T Consensus       246 ~~~-~~~~~----~~---~-v~~~~~s~~g~~las~~~D~~v~lw~~~~-~g--~w~~~~  293 (297)
T 2pm7_B          246 TLL-KEEKF----PD---V-LWRASWSLSGNVLALSGGDNKVTLWKENL-EG--KWEPAG  293 (297)
T ss_dssp             EES-SSSCC----SS---C-EEEEEECSSSCCEEEEETTSCEEEEEECT-TS--CEEEC-
T ss_pred             eee-ecccC----CC---c-EEEEEECCCCCEEEEEcCCCcEEEEEECC-CC--cEEecc
Confidence            321 10000    00   0 1222 233566777777777899998762 45  687654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.57  Score=40.68  Aligned_cols=106  Identities=10%  Similarity=0.021  Sum_probs=53.2

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC-------------ceEEEEeecC
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG-------------DACVWELSEG  274 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~-------------~~~i~~~~~~  274 (373)
                      ++...+.+ .....|..||..+.+.... ...+.. .......-++...++++..+.             .+.+|+... 
T Consensus       229 ~~~~l~~~-~~d~~i~v~d~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-  304 (369)
T 3zwl_B          229 DLTYFITS-SRDTNSFLVDVSTLQVLKK-YETDCP-LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-  304 (369)
T ss_dssp             TSSEEEEE-ETTSEEEEEETTTCCEEEE-EECSSC-EEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-
T ss_pred             CCCEEEEe-cCCceEEEEECCCCceeee-ecCCCC-ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-
Confidence            45555553 4467899999988765443 221111 111112224555555443332             256776643 


Q ss_pred             CCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          275 GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       275 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                         .  +.+..+......         ........++.+++.++..+.+.+||++  ++
T Consensus       305 ---~--~~~~~~~~~~~~---------v~~~~~s~~~~~l~s~~~dg~v~iw~~~--~~  347 (369)
T 3zwl_B          305 ---E--EEIGRVQGHFGP---------LNTVAISPQGTSYASGGEDGFIRLHHFE--KS  347 (369)
T ss_dssp             ---C--CEEEEEECCSSC---------EEEEEECTTSSEEEEEETTSEEEEEEEC--HH
T ss_pred             ---C--cchhheecccCc---------EEEEEECCCCCEEEEEcCCCeEEEEECc--cc
Confidence               2  233332211000         0122233366777778777889999998  66

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.81  E-value=0.028  Score=49.76  Aligned_cols=197  Identities=11%  Similarity=0.021  Sum_probs=88.4

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|.+++.++.  ...+.+||..++.|..+..+............ .+.        ++.++.|+.+          ..+.
T Consensus        22 ~g~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~-s~~--------~~~l~s~s~d----------~~v~   80 (377)
T 3dwl_C           22 QRTEFVTTTA--TNQVELYEQDGNGWKHARTFSDHDKIVTCVDW-APK--------SNRIVTCSQD----------RNAY   80 (377)
T ss_dssp             SSSEEECCCS--SSCBCEEEEETTEEEECCCBCCCSSCEEEEEE-CTT--------TCCEEEEETT----------SSEE
T ss_pred             CCCEEEEecC--CCEEEEEEccCCceEEEEEEecCCceEEEEEE-eCC--------CCEEEEEeCC----------CeEE
Confidence            4444455543  46788999998877666555433222222222 111        4455556543          3588


Q ss_pred             EEECCCCc-eeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCc-EEecccCCCC-CCCce-e
Q 046684          174 MYDSRHDA-WQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNT-WRELSAPMAD-RLEFA-T  247 (373)
Q Consensus       174 ~yd~~~~~-W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~-w~~~~~~~p~-~~~~~-~  247 (373)
                      +||..++. |.....+..       .......+.+  ++...+.+ .....|..||+.+++ |..+ ..+.. ..... .
T Consensus        81 vwd~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~-~~~~~~h~~~v~~  151 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLR-------LNRAATFVRWSPNEDKFAVG-SGARVISVCYFEQENDWWVS-KHLKRPLRSTILS  151 (377)
T ss_dssp             EC------CCCCEEECCC-------CSSCEEEEECCTTSSCCEEE-ESSSCEEECCC-----CCCC-EEECSSCCSCEEE
T ss_pred             EEEcCCCCceeeeeEecc-------cCCceEEEEECCCCCEEEEE-ecCCeEEEEEECCcccceee-eEeecccCCCeEE
Confidence            88888776 554433210       0011111111  45544443 345678888888765 3222 12222 22222 2


Q ss_pred             EEEE-CCEEEEEEeecCCceEEEEeecCC-----CCCC-------eEEEEeechhhhhhhcCCCCCCCceEEEecCCEEE
Q 046684          248 LVSR-NQKLTLIGGTCGGDACVWELSEGG-----DDDI-------WCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAIC  314 (373)
Q Consensus       248 ~~~~-~g~l~~~gg~~~~~~~i~~~~~~~-----~~~~-------W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~  314 (373)
                      +... ++++++.++.+ ..+.+|++....     ....       -+.+..+..          .......+...++..+
T Consensus       152 ~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~sp~~~~l  220 (377)
T 3dwl_C          152 LDWHPNNVLLAAGCAD-RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS----------GGWVHAVGFSPSGNAL  220 (377)
T ss_dssp             EEECTTSSEEEEEESS-SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC----------SSSEEEEEECTTSSCE
T ss_pred             EEEcCCCCEEEEEeCC-CEEEEEEEEecccCCCccccccccccchhhhhhcccC----------CceEEEEEECCCCCEE
Confidence            2222 56666665543 457999985310     0011       122222200          0000122233366667


Q ss_pred             EEEcCCccEEEEEccccCC
Q 046684          315 LYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       315 ~~~~~~~~~~~yd~~~~~~  333 (373)
                      +.++..+.+.+||.+  ++
T Consensus       221 ~~~~~d~~i~iwd~~--~~  237 (377)
T 3dwl_C          221 AYAGHDSSVTIAYPS--AP  237 (377)
T ss_dssp             EEEETTTEEC-CEEC--ST
T ss_pred             EEEeCCCcEEEEECC--CC
Confidence            777777789999998  76

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.80  E-value=0.14  Score=46.54  Aligned_cols=193  Identities=9%  Similarity=0.018  Sum_probs=91.3

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      ++.+++.|+.  ...+.+||..+++...+-... ....-.++++  .+..       .+.++.|+.+          ..+
T Consensus       131 ~~~~lasGs~--dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f--~p~~-------~~~l~s~s~D----------~~v  189 (435)
T 4e54_B          131 HPSTVAVGSK--GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKF--NPLN-------TNQFYASSME----------GTT  189 (435)
T ss_dssp             CTTCEEEEET--TSCEEEECSSCCSCCEEECCCSSSCCCCEEEE--CSSC-------TTEEEEECSS----------SCE
T ss_pred             CCCEEEEEeC--CCEEEEEECCCCCceeEEEccCCCCCEEEEEE--eCCC-------CCEEEEEeCC----------CEE
Confidence            4434444432  467999999887654322221 1111122222  1111       3345555544          357


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR  251 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~  251 (373)
                      .+||.+++.-+......      ..........+. +|.+.+.| .....|..+|+..+.-..+    ..+......+..
T Consensus       190 ~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g-~~dg~i~~wd~~~~~~~~~----~~h~~~v~~v~~  258 (435)
T 4e54_B          190 RLQDFKGNILRVFASSD------TINIWFCSLDVSASSRMVVTG-DNVGNVILLNMDGKELWNL----RMHKKKVTHVAL  258 (435)
T ss_dssp             EEEETTSCEEEEEECCS------SCSCCCCCEEEETTTTEEEEE-CSSSBEEEEESSSCBCCCS----BCCSSCEEEEEE
T ss_pred             EEeeccCCceeEEeccC------CCCccEEEEEECCCCCEEEEE-eCCCcEeeeccCcceeEEE----ecccceEEeeee
Confidence            88998877655443321      001111222232 45666554 4567789999876543222    222222222332


Q ss_pred             --CCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEc
Q 046684          252 --NQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRE  328 (373)
Q Consensus       252 --~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~  328 (373)
                        ++. +++.++ .+..+.+|++..  ....=.........          ......++..++..++.++.++.+.+||.
T Consensus       259 ~p~~~~~~~s~s-~d~~v~iwd~~~--~~~~~~~~~~~~h~----------~~v~~~~~spdg~~l~s~~~D~~i~iwd~  325 (435)
T 4e54_B          259 NPCCDWFLATAS-VDQTVKIWDLRQ--VRGKASFLYSLPHR----------HPVNAACFSPDGARLLTTDQKSEIRVYSA  325 (435)
T ss_dssp             CTTCSSEEEEEE-TTSBCCEEETTT--CCSSSCCSBCCBCS----------SCEEECCBCTTSSEEEEEESSSCEEEEES
T ss_pred             cCCCceEEEEec-CcceeeEEeccc--ccccceEEEeeecc----------ccccceeECCCCCeeEEEcCCCEEEEEEC
Confidence              344 444444 444578999865  11100000000000          00001112235666677777778999999


Q ss_pred             cccCC
Q 046684          329 DEDKR  333 (373)
Q Consensus       329 ~~~~~  333 (373)
                      .  +.
T Consensus       326 ~--~~  328 (435)
T 4e54_B          326 S--QW  328 (435)
T ss_dssp             S--SS
T ss_pred             C--CC
Confidence            8  65

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=95.67  E-value=0.24  Score=42.43  Aligned_cols=105  Identities=13%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee-EEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT-LVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~-~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      ++.+.+.+ .....+..||+.+++-... ..  ....... +.. -++.+++.++. +..+.+|++..    .+  .+..
T Consensus       118 ~~~~l~s~-~~d~~i~iwd~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~----~~--~~~~  186 (312)
T 4ery_A          118 QSNLIVSG-SFDESVRIWDVKTGKCLKT-LP--AHSDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTAS----GQ--CLKT  186 (312)
T ss_dssp             SSSEEEEE-ETTSCEEEEETTTCCEEEE-EC--CCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT----CC--EEEE
T ss_pred             CCCEEEEE-eCCCcEEEEECCCCEEEEE-ec--CCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCC----Cc--eeeE
Confidence            34444443 4456789999987654322 11  1111122 222 25666666554 44579999864    32  2222


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +......        .........++..++.++..+.+.+||.+  +.
T Consensus       187 ~~~~~~~--------~~~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~  224 (312)
T 4ery_A          187 LIDDDNP--------PVSFVKFSPNGKYILAATLDNTLKLWDYS--KG  224 (312)
T ss_dssp             ECCSSCC--------CEEEEEECTTSSEEEEEETTTEEEEEETT--TT
T ss_pred             EeccCCC--------ceEEEEECCCCCEEEEEcCCCeEEEEECC--CC
Confidence            2111000        00122333456666667777789999998  76

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.66  E-value=0.028  Score=49.74  Aligned_cols=188  Identities=7%  Similarity=-0.072  Sum_probs=89.5

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      .+|..++.++.  ...+.+||..+++....  +...... ..++...+.+       ..+++.++.+          ..+
T Consensus       149 pdg~~l~sgs~--dg~v~iwd~~~~~~~~~--~~~h~~~-v~~v~~s~~~-------~~~~~s~~~d----------g~v  206 (357)
T 4g56_B          149 SDGTQAVSGGK--DFSVKVWDLSQKAVLKS--YNAHSSE-VNCVAACPGK-------DTIFLSCGED----------GRI  206 (357)
T ss_dssp             SSSSEEEEEET--TSCEEEEETTTTEEEEE--ECCCSSC-EEEEEECTTC-------SSCEEEEETT----------SCE
T ss_pred             CCCCEEEEEeC--CCeEEEEECCCCcEEEE--EcCCCCC-EEEEEEccCC-------CceeeeeccC----------Cce
Confidence            35544444443  46789999988764331  1111111 1112111111       2355555543          357


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eEE
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TLV  249 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~  249 (373)
                      .+||.++++-.......      ........+++.  ++.+.+.| .....|..||+.+.+-...   +....... .++
T Consensus       207 ~~wd~~~~~~~~~~~~~------~~~~~v~~v~~sp~~~~~la~g-~~d~~i~~wd~~~~~~~~~---~~~~~~~v~~l~  276 (357)
T 4g56_B          207 LLWDTRKPKPATRIDFC------ASDTIPTSVTWHPEKDDTFACG-DETGNVSLVNIKNPDSAQT---SAVHSQNITGLA  276 (357)
T ss_dssp             EECCTTSSSCBCBCCCT------TCCSCEEEEEECTTSTTEEEEE-ESSSCEEEEESSCGGGCEE---ECCCSSCEEEEE
T ss_pred             EEEECCCCceeeeeeec------cccccccchhhhhcccceEEEe-ecccceeEEECCCCcEeEE---EeccceeEEEEE
Confidence            88888776532221110      000001112222  34555553 4456788999887542211   11111222 222


Q ss_pred             E-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEE
Q 046684          250 S-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIW  326 (373)
Q Consensus       250 ~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~y  326 (373)
                      . .++.-+++.+..+..+.+|+++.    .  +.+..+....          . ...++.  .++.+++.++.++.|.+|
T Consensus       277 ~sp~~~~~lasgs~D~~i~iwd~~~----~--~~~~~~~H~~----------~-V~~vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          277 YSYHSSPFLASISEDCTVAVLDADF----S--EVFRDLSHRD----------F-VTGVAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTS----C--EEEEECCCSS----------C-EEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EcCCCCCEEEEEeCCCEEEEEECCC----C--cEeEECCCCC----------C-EEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence            2 24543444444445589998854    3  3333322110          0 122222  367778888888889999


Q ss_pred             Ecc
Q 046684          327 RED  329 (373)
Q Consensus       327 d~~  329 (373)
                      |+.
T Consensus       340 ~~~  342 (357)
T 4g56_B          340 HLP  342 (357)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            987

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.64  E-value=0.063  Score=47.28  Aligned_cols=189  Identities=7%  Similarity=-0.043  Sum_probs=88.7

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|..++.++.  ...+.+||..+++-...  +...... -.++...+.+       ..+++.|+.+          ..+.
T Consensus       138 dg~~l~sgs~--d~~i~iwd~~~~~~~~~--~~~h~~~-V~~~~~~~~~-------~~~l~s~s~D----------~~v~  195 (344)
T 4gqb_B          138 SGTQAVSGSK--DICIKVWDLAQQVVLSS--YRAHAAQ-VTCVAASPHK-------DSVFLSCSED----------NRIL  195 (344)
T ss_dssp             TSSEEEEEET--TSCEEEEETTTTEEEEE--ECCCSSC-EEEEEECSSC-------TTEEEEEETT----------SCEE
T ss_pred             CCCEEEEEeC--CCeEEEEECCCCcEEEE--EcCcCCc-eEEEEecCCC-------CCceeeeccc----------cccc
Confidence            5544444443  45789999988764321  1111111 1112221111       3466666554          3588


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR  251 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~  251 (373)
                      +||.++++-...-...      ........+++.  ++.+.+.| .....|..||+.+.+-  + ..+..+......+..
T Consensus       196 iwd~~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~~l~sg-~~dg~v~~wd~~~~~~--~-~~~~~h~~~v~~v~f  265 (344)
T 4gqb_B          196 LWDTRCPKPASQIGCS------APGYLPTSLAWHPQQSEVFVFG-DENGTVSLVDTKSTSC--V-LSSAVHSQCVTGLVF  265 (344)
T ss_dssp             EEETTSSSCEEECC----------CCCEEEEEECSSCTTEEEEE-ETTSEEEEEESCC--C--C-EEEECCSSCEEEEEE
T ss_pred             cccccccceeeeeecc------eeeccceeeeecCCCCcceEEe-ccCCcEEEEECCCCcE--E-EEEcCCCCCEEEEEE
Confidence            9999876532221111      000011112222  34555554 4567788999986542  1 112222222222222


Q ss_pred             --CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEE
Q 046684          252 --NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       252 --~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd  327 (373)
                        +|.-+++.+..+..+.+|++..    .  +.+ .+..    +     ... ...+..  .+..+++.++.++.|.+++
T Consensus       266 sp~g~~~lasgs~D~~i~vwd~~~----~--~~~-~~~~----H-----~~~-V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          266 SPHSVPFLASLSEDCSLAVLDSSL----S--ELF-RSQA----H-----RDF-VRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTC----C--EEE-EECC----C-----SSC-EEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             ccCCCeEEEEEeCCCeEEEEECCC----C--cEE-EEcC----C-----CCC-EEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence              4533444444555589998754    3  222 2110    0     000 122222  3556777788888899999


Q ss_pred             ccccCC
Q 046684          328 EDEDKR  333 (373)
Q Consensus       328 ~~~~~~  333 (373)
                      ..  +.
T Consensus       329 v~--~~  332 (344)
T 4gqb_B          329 VP--TE  332 (344)
T ss_dssp             CC--C-
T ss_pred             CC--CC
Confidence            98  55

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.61  E-value=1.3  Score=40.22  Aligned_cols=112  Identities=8%  Similarity=0.052  Sum_probs=60.1

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCC------------------------CCCCceeEEEE-CCEEEEEEeec
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMA------------------------DRLEFATLVSR-NQKLTLIGGTC  262 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p------------------------~~~~~~~~~~~-~g~l~~~gg~~  262 (373)
                      +|.+.+.++ ....|..||+.+++.... ....                        .......+... +++.+++++..
T Consensus       251 d~~~l~s~~-~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          251 KDYLLLSAG-GDDKIFAWDWKTGKNLST-FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             STTEEEEEE-SSSEEEEEETTTCCEEEE-EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCEEEEEe-CCCeEEEEECCCCcEeee-ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence            666666643 567899999988764332 1110                        00111122222 45555555535


Q ss_pred             CCceEEEEe-ecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC-------Cc--cEEEEEccccC
Q 046684          263 GGDACVWEL-SEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV-------GL--GMIIWREDEDK  332 (373)
Q Consensus       263 ~~~~~i~~~-~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~--~~~~yd~~~~~  332 (373)
                      ...+.+|++ +.  ....+..+..+.... .          ...+....+.+++..+.       ..  .++.++.+  +
T Consensus       329 d~~i~iw~~~~~--~~~~l~~~~~~~~~~-~----------v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~--~  393 (450)
T 2vdu_B          329 TKCIIILEMSEK--QKGDLALKQIITFPY-N----------VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN--E  393 (450)
T ss_dssp             CSEEEEEEECSS--STTCEEEEEEEECSS-C----------EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT--T
T ss_pred             CCeEEEEEeccC--CCCceeeccEeccCC-c----------eEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC--C
Confidence            556899999 33  345677776665431 1          24444455667766533       22  45555666  8


Q ss_pred             CcccEE
Q 046684          333 RKWEWV  338 (373)
Q Consensus       333 ~~~~W~  338 (373)
                      +  +|+
T Consensus       394 ~--~~~  397 (450)
T 2vdu_B          394 N--SFV  397 (450)
T ss_dssp             T--EEE
T ss_pred             C--eEE
Confidence            8  554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.54  E-value=1.4  Score=43.57  Aligned_cols=216  Identities=11%  Similarity=0.115  Sum_probs=110.0

Q ss_pred             eEEEEeCCCCCccccCC--CCCCCCc-eeEE-eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCC--CCC-CCCeEEE
Q 046684           64 CCYVHNPVSDKWHVLSL--DFLPYPV-RPVS-SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN--VSR-TNPAVGI  136 (373)
Q Consensus        64 ~~~~~d~~~~~w~~~~~--~~~~~~~-~~~~-~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~--~~~-~~~~~~~  136 (373)
                      .+..||+.++++..+..  +.++... .++. -.+|.|++...    .-+++||+.+++++.+....  ... .....++
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  503 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL----SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTL  503 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES----SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEE
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec----CceeEEeCCCCeEEEccccccccccCCceEEEE
Confidence            46668887776655432  1122111 1222 22577777653    35899999999998765331  111 1122233


Q ss_pred             EEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEE
Q 046684          137 VMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWI  214 (373)
Q Consensus       137 ~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~  214 (373)
                      ..+.   +     +++++... .           .+.+||..++++ .....+.. .  ............  +|.+++.
T Consensus       504 ~~d~---~-----g~lWigt~-~-----------Gl~~~~~~~~~~-~~~~~~~~-~--~l~~~~i~~i~~d~~g~lWig  559 (795)
T 4a2l_A          504 FRDS---H-----KRLWIGGE-E-----------GLSVFKQEGLDI-QKASILPV-S--NVTKLFTNCIYEASNGIIWVG  559 (795)
T ss_dssp             EECT---T-----CCEEEEES-S-----------CEEEEEEETTEE-EECCCSCS-C--GGGGSCEEEEEECTTSCEEEE
T ss_pred             EECC---C-----CCEEEEeC-C-----------ceEEEeCCCCeE-EEecCCCC-C--CCCCCeeEEEEECCCCCEEEE
Confidence            3321   1     66777542 2           478899888887 43321000 0  000111112333  4676655


Q ss_pred             EcCCceEEEEEECCCCcEEecccC--CCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe---ech
Q 046684          215 TSARAYSVIGFDIESNTWRELSAP--MADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK---VPI  288 (373)
Q Consensus       215 gg~~~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~---~p~  288 (373)
                      + .  ..+..||+.++++......  +|... ...++. -+|.|++.+.   ..+..|+++.    .++.....   ++.
T Consensus       560 T-~--~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~---~Gl~~~~~~~----~~~~~~~~~dGl~~  628 (795)
T 4a2l_A          560 T-R--EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN---RGISCFNPET----EKFRNFTESDGLQS  628 (795)
T ss_dssp             E-S--SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET---TEEEEEETTT----TEEEEECGGGTCSC
T ss_pred             e-C--CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC---CceEEEcCCC----CcEEEcCCcCCCcc
Confidence            3 2  2799999999998876221  12211 122333 2678887762   3355666644    66554332   111


Q ss_pred             hhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          289 EMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ..+.         ....+...+|.||+-+..  .+..||++
T Consensus       629 ~~f~---------~~~~~~~~~G~l~~g~~~--Gl~~~~p~  658 (795)
T 4a2l_A          629 NQFN---------TASYCRTSVGQMYFGGIN--GITTFRPE  658 (795)
T ss_dssp             SCEE---------EEEEEECTTSCEEEEETT--EEEEECGG
T ss_pred             ccCc---------cCceeECCCCeEEEecCC--ceEEEcHH
Confidence            1110         012334457788885433  68888887

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.50  E-value=0.87  Score=40.44  Aligned_cols=150  Identities=10%  Similarity=0.051  Sum_probs=72.8

Q ss_pred             EEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EEEEEEcCCce---EEEEE
Q 046684          151 RIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITSARAY---SVIGF  225 (373)
Q Consensus       151 kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~~~~---~i~~y  225 (373)
                      ++++.++.+          ..+.+||..+++-...-..+...  .........+++. +| .+++.++ ...   .|..|
T Consensus       179 ~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~-~d~~~~~i~~~  245 (416)
T 2pm9_A          179 HVFASAGSS----------NFASIWDLKAKKEVIHLSYTSPN--SGIKQQLSVVEWHPKNSTRVATAT-GSDNDPSILIW  245 (416)
T ss_dssp             TEEEEESSS----------SCEEEEETTTTEEEEEECCCCCS--SCCCCCEEEEEECSSCTTEEEEEE-CCSSSCCCCEE
T ss_pred             cEEEEEcCC----------CCEEEEECCCCCcceEEeccccc--cccCCceEEEEECCCCCCEEEEEE-CCCCCceEEEE
Confidence            456666544          35899999886643322221000  0000011112222 23 4555543 233   78899


Q ss_pred             ECCCCcEEecccCCC-CCCCce-eEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCC
Q 046684          226 DIESNTWRELSAPMA-DRLEFA-TLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASW  301 (373)
Q Consensus       226 d~~~~~w~~~~~~~p-~~~~~~-~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~  301 (373)
                      |+.+..-. + ..+. ...... .+...  ++.+++.++. +..+.+|+++.    .  +.+..+.....        ..
T Consensus       246 d~~~~~~~-~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~wd~~~----~--~~~~~~~~~~~--------~v  308 (416)
T 2pm9_A          246 DLRNANTP-L-QTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTVLLWNPES----A--EQLSQFPARGN--------WC  308 (416)
T ss_dssp             ETTSTTSC-S-BCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEEEEECSSS----C--CEEEEEECSSS--------CC
T ss_pred             eCCCCCCC-c-EEeecCccCceeEEEeCCCCCCeEEEEeC-CCCEEEeeCCC----C--ccceeecCCCC--------ce
Confidence            99875311 1 1122 122222 22222  5666666654 44578998865    2  33333332110        01


Q ss_pred             CceEEEecCC-EEEEEEcCCccEEEEEccccCC
Q 046684          302 GGTRCAAGNG-AICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       302 ~~~~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                       .......++ .+++.++..+.+.+||+.  +.
T Consensus       309 -~~~~~s~~~~~~l~s~~~d~~i~iw~~~--~~  338 (416)
T 2pm9_A          309 -FKTKFAPEAPDLFACASFDNKIEVQTLQ--NL  338 (416)
T ss_dssp             -CCEEECTTCTTEEEECCSSSEEEEEESC--CC
T ss_pred             -EEEEECCCCCCEEEEEecCCcEEEEEcc--CC
Confidence             122233344 788888888889999998  55

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.49  E-value=0.33  Score=43.62  Aligned_cols=63  Identities=13%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccC
Q 046684          253 QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDK  332 (373)
Q Consensus       253 g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~  332 (373)
                      |.+++.+ ..+..+.+|++..    .  ..+..+..-.         ......++..++..++.++.++.+.+||.+  +
T Consensus       308 g~~l~sg-s~D~~i~iwd~~~----~--~~~~~~~~h~---------~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~--~  369 (410)
T 1vyh_C          308 GPFLLSG-SRDKTIKMWDVST----G--MCLMTLVGHD---------NWVRGVLFHSGGKFILSCADDKTLRVWDYK--N  369 (410)
T ss_dssp             CCEEEEE-ETTSEEEEEETTT----T--EEEEEEECCS---------SCEEEEEECSSSSCEEEEETTTEEEEECCT--T
T ss_pred             CCEEEEE-eCCCeEEEEECCC----C--ceEEEEECCC---------CcEEEEEEcCCCCEEEEEeCCCeEEEEECC--C
Confidence            4444444 4455589999864    2  2333332100         000122233356666777777789999998  6


Q ss_pred             C
Q 046684          333 R  333 (373)
Q Consensus       333 ~  333 (373)
                      +
T Consensus       370 ~  370 (410)
T 1vyh_C          370 K  370 (410)
T ss_dssp             S
T ss_pred             C
Confidence            6

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.47  E-value=1.1  Score=38.79  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=35.6

Q ss_pred             CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          253 QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       253 g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      +.+++.++ .+..+.+|++..  ....-..+..+......   .    .....+...++..++.++.++.+.+||+.
T Consensus       299 ~~~l~~~~-~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~---~----~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          299 QKMLALGN-QVGKLYVWDLEV--EDPHKAKCTTLTHHKCG---A----AIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSEEEEEC-TTSCEEEEECCS--SSGGGCEEEEECCTTCC---S----CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CcEEEEEe-cCCcEEEEECCC--CCCccccceEEcccccC---C----ceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            67666664 344589999976  22222233333321100   0    00122333466777777777889999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=95.46  E-value=1.2  Score=39.11  Aligned_cols=260  Identities=8%  Similarity=-0.035  Sum_probs=117.7

Q ss_pred             CceEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCC
Q 046684           50 PAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVS  128 (373)
Q Consensus        50 ~~~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~  128 (373)
                      ...++.....+....++.+|..+.....+............-+.+| .|++...   ...++++|+.+++-+.+-..+..
T Consensus        47 g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~---~~~l~~~d~~~g~~~~~~~~~~~  123 (388)
T 3pe7_A           47 GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD---GRNLMRVDLATLEENVVYQVPAE  123 (388)
T ss_dssp             SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET---TTEEEEEETTTCCEEEEEECCTT
T ss_pred             CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC---CCeEEEEECCCCcceeeeechhh
Confidence            3345554443444678889998877666643222211112234444 5555554   35899999999886655433322


Q ss_pred             CCCCeEEEEEcCCCCCCCCCceEEEEEeccCCC--CCC---------CCcccceEEEEECCCCceeeecCCCccccccce
Q 046684          129 RTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDE--PRG---------GATYESMVEMYDSRHDAWQIIGSMPVEFAVRLT  197 (373)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~--~~~---------~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~  197 (373)
                      ... .......+.+       ..++.+......  ...         .......++++|..+++-+.+...+.       
T Consensus       124 ~~~-~~~~~~~~dg-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-------  188 (388)
T 3pe7_A          124 WVG-YGTWVANSDC-------TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ-------  188 (388)
T ss_dssp             EEE-EEEEEECTTS-------SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS-------
T ss_pred             ccc-ccceeECCCC-------CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc-------
Confidence            110 1111111111       223222110000  000         01223678999998887555432210       


Q ss_pred             eccCCceEE-E-CCE-EEEEEcC----CceEEEEEECCCCcEEecccCCCCCCCceeE-EEECCE-EEEEEeecCC-ceE
Q 046684          198 VWTPNESVC-T-RGM-LYWITSA----RAYSVIGFDIESNTWRELSAPMADRLEFATL-VSRNQK-LTLIGGTCGG-DAC  267 (373)
Q Consensus       198 ~~~~~~~~~-~-~g~-ly~~gg~----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~-~~~~g~-l~~~gg~~~~-~~~  267 (373)
                       .. ....+ - +|+ |.+....    ....|+.+|+++.+...+ ............ ..-+|+ |+.+....+. ...
T Consensus       189 -~~-~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  265 (388)
T 3pe7_A          189 -WL-GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV-KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF  265 (388)
T ss_dssp             -CE-EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES-CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred             -cc-cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe-eeCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence             01 11122 2 444 3333211    145799999988776666 222211111111 222565 5555443333 223


Q ss_pred             EEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEE--------cCCccEEEEEccccCCcccEEE
Q 046684          268 VWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR--------EVGLGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       268 i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~yd~~~~~~~~~W~~  339 (373)
                      +|.++.  ++.+-+.+...+........     .........|..|++..        .....++++|++  ++  +-+.
T Consensus       266 l~~~d~--~~g~~~~l~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~--~~--~~~~  334 (388)
T 3pe7_A          266 IYSADP--ETLENRQLTSMPACSHLMSN-----YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK--NG--TQHR  334 (388)
T ss_dssp             EEEECT--TTCCEEEEEEECCEEEEEEC-----TTSSEEEEEECCC------------CCCCEEEEEETT--TT--EEEE
T ss_pred             EEEEec--CCCceEEEEcCCCceeeeec-----CCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc--CC--ceEE
Confidence            444443  34666666555531000000     00123444555555432        334579999998  87  5555


Q ss_pred             ec
Q 046684          340 VG  341 (373)
Q Consensus       340 ~~  341 (373)
                      +.
T Consensus       335 l~  336 (388)
T 3pe7_A          335 VA  336 (388)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.46  E-value=0.31  Score=42.17  Aligned_cols=146  Identities=5%  Similarity=-0.017  Sum_probs=78.6

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCC---ceEEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSAR---AYSVIGF  225 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~---~~~i~~y  225 (373)
                      +++|+.+...          ..+.+||..+++.+.+...+.        ......+. -+|.+|+.....   ...|..|
T Consensus        56 g~l~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~--------~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           56 GQLFLLDVFE----------GNIFKINPETKEIKRPFVSHK--------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             SCEEEEETTT----------CEEEEECTTTCCEEEEEECSS--------SSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             CCEEEEECCC----------CEEEEEeCCCCcEEEEeeCCC--------CCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            6688876432          468999998888765432110        01111222 257888774221   2589999


Q ss_pred             ECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeec---CCceEEEEeecCCCCCCeEEEEe-echhhhhhhcCCCCC
Q 046684          226 DIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTC---GGDACVWELSEGGDDDIWCLIEK-VPIEMGMRLSGGKAS  300 (373)
Q Consensus       226 d~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~---~~~~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~~~~~  300 (373)
                      |+++++...+-........-..++. -+|++|+.....   .....+|.++.  ++.+...+.. ...            
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~------------  183 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP--DFRTVTPIIQNISV------------  183 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT--TSCCEEEEEEEESS------------
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeC--CCCEEEEeecCCCc------------
Confidence            9998876633111111111122222 367888865421   11246888765  4455554422 111            


Q ss_pred             CCceEE-Ee-cCCEEEEEEcCCccEEEEEcc
Q 046684          301 WGGTRC-AA-GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       301 ~~~~~~-~~-~~~~i~~~~~~~~~~~~yd~~  329 (373)
                        +..+ .. .++.||+.......+.+||++
T Consensus       184 --~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          184 --ANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             --EEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             --ccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence              1222 22 344688877666679999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.46  E-value=0.87  Score=40.15  Aligned_cols=22  Identities=5%  Similarity=0.096  Sum_probs=16.8

Q ss_pred             CCEEEEEEcCC---ccEEEEEccccCC
Q 046684          310 NGAICLYREVG---LGMIIWREDEDKR  333 (373)
Q Consensus       310 ~~~i~~~~~~~---~~~~~yd~~~~~~  333 (373)
                      ++.+++.++..   +.+.+||++  +.
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~--~~  268 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETE--FG  268 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETT--TC
T ss_pred             CCCEEEEEecCCCCceEEEEECC--CC
Confidence            56666666666   789999998  76

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.45  E-value=0.21  Score=43.12  Aligned_cols=195  Identities=12%  Similarity=0.077  Sum_probs=92.3

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|..++.++.  ...+.+||..+++...+..+........ ++.......      +++++.|+.+          ..+.
T Consensus        24 ~g~~lasgs~--D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~------~~~l~s~s~D----------~~v~   84 (316)
T 3bg1_A           24 YGTRLATCSS--DRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMY------GNILASCSYD----------RKVI   84 (316)
T ss_dssp             GGCEEEEEET--TTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGG------SSCEEEEETT----------SCEE
T ss_pred             CCCEEEEEeC--CCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCC------CCEEEEEECC----------CEEE
Confidence            4444444443  4678888887765332222221111111 111111000      3455555544          4588


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE-C--CEEEEEEcCCceEEEEEECCCC-cEEecccCCCCCCCceeEE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-R--GMLYWITSARAYSVIGFDIESN-TWRELSAPMADRLEFATLV  249 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~--g~ly~~gg~~~~~i~~yd~~~~-~w~~~~~~~p~~~~~~~~~  249 (373)
                      +||.+++.|.....+..      ....-..+++. +  |.+.+. +.....+..+|..++ .|... .....+......+
T Consensus        85 iWd~~~~~~~~~~~~~~------h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~-~~~~~h~~~v~~~  156 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAG------HDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVK-KINNAHTIGCNAV  156 (316)
T ss_dssp             EECCSSSCCCEEEEECC------CSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEEC-CBTTSSSSCBCCC
T ss_pred             EEECCCCcceEEEEccC------CCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCccee-eeeccccCCcceE
Confidence            99998887765433210      00111122222 2  444444 445667888888765 56543 2221111111001


Q ss_pred             EE-------------------CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec-
Q 046684          250 SR-------------------NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG-  309 (373)
Q Consensus       250 ~~-------------------~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-  309 (373)
                      ..                   .+++++.+ ..+..+.+|+++.   ...|..+..+..-..         . ...+... 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lWd~~~---~~~~~~~~~l~~h~~---------~-V~~v~~sp  222 (316)
T 3bg1_A          157 SWAPAVVPGSLIDHPSGQKPNYIKRFASG-GCDNLIKLWKEEE---DGQWKEEQKLEAHSD---------W-VRDVAWAP  222 (316)
T ss_dssp             EECCCCCC------CCSCCCCCCCBEECC-BTTSBCCEEEECT---TSCEEEEECCBCCSS---------C-EEEEECCC
T ss_pred             EEccccCCccccccccccCccccceEEEe-cCCCeEEEEEeCC---CCccceeeecccCCC---------c-eEEEEecC
Confidence            10                   02334443 4445579999963   356877665432110         0 1222221 


Q ss_pred             C----CEEEEEEcCCccEEEEEcc
Q 046684          310 N----GAICLYREVGLGMIIWRED  329 (373)
Q Consensus       310 ~----~~i~~~~~~~~~~~~yd~~  329 (373)
                      +    +.+++.++.++.+.+||.+
T Consensus       223 ~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          223 SIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             CSSCSCCEEEEEETTCEEEEEECS
T ss_pred             CCCCCCceEEEEcCCCeEEEEEcc
Confidence            2    2567777777789999987

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=95.44  E-value=2.1  Score=41.58  Aligned_cols=139  Identities=12%  Similarity=0.053  Sum_probs=71.3

Q ss_pred             cceEEEEECCC------C--ceeeecCCCccccccceeccCCceEEECCEEEEEEcC--CceEEEEEECCCC---cEEec
Q 046684          169 ESMVEMYDSRH------D--AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA--RAYSVIGFDIESN---TWREL  235 (373)
Q Consensus       169 ~~~~~~yd~~~------~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~--~~~~i~~yd~~~~---~w~~~  235 (373)
                      ...++++|..+      +  .++.+..-..       ... .....-++.+|+.+..  ....|+.+|+.+.   .|+.+
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-------~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l  329 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLIDNFE-------GEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL  329 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSS-------SCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred             ccEEEEEECcccccccCCccceEEeeCCCC-------cEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec
Confidence            46789999876      4  5776654311       011 1112235678887532  2457999999875   58877


Q ss_pred             ccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCE
Q 046684          236 SAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGA  312 (373)
Q Consensus       236 ~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~  312 (373)
                       .+......-..+... ++.|++....++. ..+|..+.  .+.+  .+..++.+...          ...+..  .++.
T Consensus       330 -~~~~~~~~~~~~~~~~~~~lv~~~~~~g~-~~l~~~~~--~~g~--~~~~l~~~~~~----------v~~~~~s~d~~~  393 (710)
T 2xdw_A          330 -VPEHEKDVLEWVACVRSNFLVLCYLHDVK-NTLQLHDL--ATGA--LLKIFPLEVGS----------VVGYSGQKKDTE  393 (710)
T ss_dssp             -ECCCSSCEEEEEEEETTTEEEEEEEETTE-EEEEEEET--TTCC--EEEEECCCSSE----------EEEEECCTTCSE
T ss_pred             -cCCCCCCeEEEEEEEcCCEEEEEEEECCE-EEEEEEEC--CCCC--EEEecCCCCce----------EEEEecCCCCCE
Confidence             343221112234445 6777777654443 34554442  1233  22333322100          112222  3446


Q ss_pred             EEEEEc---CCccEEEEEccccCC
Q 046684          313 ICLYRE---VGLGMIIWREDEDKR  333 (373)
Q Consensus       313 i~~~~~---~~~~~~~yd~~~~~~  333 (373)
                      +++...   ....++.||++  ++
T Consensus       394 l~~~~ss~~~P~~i~~~d~~--tg  415 (710)
T 2xdw_A          394 IFYQFTSFLSPGIIYHCDLT--KE  415 (710)
T ss_dssp             EEEEEECSSCCCEEEEEETT--SS
T ss_pred             EEEEEeCCCCCCEEEEEECC--CC
Confidence            665432   22469999998  87

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.41  E-value=1.2  Score=38.65  Aligned_cols=153  Identities=7%  Similarity=-0.009  Sum_probs=77.6

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|..++.++.  ...+.+||..+++-..+-.........+++ .. +        ++++++.|+.+          ..+.
T Consensus       138 ~~~~l~s~s~--dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~-~~-p--------dg~~lasg~~d----------g~i~  195 (343)
T 3lrv_A          138 NTEYFIWADN--RGTIGFQSYEDDSQYIVHSAKSDVEYSSGV-LH-K--------DSLLLALYSPD----------GILD  195 (343)
T ss_dssp             -CCEEEEEET--TCCEEEEESSSSCEEEEECCCSSCCCCEEE-EC-T--------TSCEEEEECTT----------SCEE
T ss_pred             CCCEEEEEeC--CCcEEEEECCCCcEEEEEecCCCCceEEEE-EC-C--------CCCEEEEEcCC----------CEEE
Confidence            3444444432  467899999888764332222111111222 21 1        16777777654          4689


Q ss_pred             EEECCCCcee--eecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEE-ecccCCCCCC---Cc
Q 046684          174 MYDSRHDAWQ--IIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWR-ELSAPMADRL---EF  245 (373)
Q Consensus       174 ~yd~~~~~W~--~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~-~~~~~~p~~~---~~  245 (373)
                      +||.++++-.  .+.. .      +.  .....+.+  +|...+.++ . ..|..+|+.+.+-. .+ .+.....   ..
T Consensus       196 iwd~~~~~~~~~~~~~-~------h~--~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~  263 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPV-D------EE--AKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAY-PTYTIPEFKTGT  263 (343)
T ss_dssp             EEESSCTTSCCEECCC-C------TT--SCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSS-CCCBC-----CC
T ss_pred             EEECCCCCCCccEEec-c------CC--CCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceee-cccccccccccc
Confidence            9999876532  1111 0      00  11111222  455555544 2 38999999876421 12 1111111   11


Q ss_pred             eeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEE
Q 046684          246 ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCL  282 (373)
Q Consensus       246 ~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~  282 (373)
                      ..++. .+|+.+++++..+..+.+|+++.  ..+.|+.
T Consensus       264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~~--~~~~~~~  299 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAYSNESNSLTIYKFDK--KTKNWTK  299 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECT--TTCSEEE
T ss_pred             eEEEECCCCCEEEEecCCCCcEEEEEEcc--cccceEe
Confidence            11222 25666666544355689999987  6678987

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.39  E-value=1.1  Score=38.15  Aligned_cols=104  Identities=8%  Similarity=0.005  Sum_probs=53.2

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE----CCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR----NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~----~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      +.+.+.| .....|..+|+.+.+-... ..... ......+..    ++.+++. +..+..+.+|++..    .  +.+.
T Consensus       153 ~~~l~sg-s~D~~v~iwd~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~l~s-~s~D~~i~iWd~~~----~--~~~~  222 (304)
T 2ynn_A          153 PSTFASG-CLDRTVKVWSLGQSTPNFT-LTTGQ-ERGVNYVDYYPLPDKPYMIT-ASDDLTIKIWDYQT----K--SCVA  222 (304)
T ss_dssp             TTEEEEE-ETTSEEEEEETTCSSCSEE-EECCC-TTCEEEEEECCSTTCCEEEE-EETTSEEEEEETTT----T--EEEE
T ss_pred             CCEEEEE-eCCCeEEEEECCCCCccce-eccCC-cCcEEEEEEEEcCCCCEEEE-EcCCCeEEEEeCCC----C--ccce
Confidence            4455553 4567788999865432111 01111 111122222    3444444 44555689999864    2  3344


Q ss_pred             eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+..-..         .....+...++.+++.++..+.+.+||.+  +.
T Consensus       223 ~~~~h~~---------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~--~~  260 (304)
T 2ynn_A          223 TLEGHMS---------NVSFAVFHPTLPIIISGSEDGTLKIWNSS--TY  260 (304)
T ss_dssp             EEECCSS---------CEEEEEECSSSSEEEEEETTSCEEEEETT--TC
T ss_pred             eeCCCCC---------CEEEEEECCCCCEEEEEcCCCeEEEEECC--CC
Confidence            4321110         00122333456677778888889999999  76

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.33  E-value=0.9  Score=44.66  Aligned_cols=178  Identities=9%  Similarity=0.008  Sum_probs=87.2

Q ss_pred             ceEEEEEcCcccceec-cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceee
Q 046684          106 ILQLVLCNPFTRQFRY-LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI  184 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~  184 (373)
                      ...+.+||..+++... +....   ..........         +++.++.|+.+          ..+.+||..+++...
T Consensus        34 ~g~v~iwd~~~~~~~~~~~~~~---~~v~~~~~s~---------~~~~l~~~~~d----------g~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           34 SGRVEIWNYETQVEVRSIQVTE---TPVRAGKFIA---------RKNWIIVGSDD----------FRIRVFNYNTGEKVV   91 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEECCS---SCEEEEEEEG---------GGTEEEEEETT----------SEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCceEEEEecCC---CcEEEEEEeC---------CCCEEEEEeCC----------CeEEEEECCCCcEEE
Confidence            4578888888765433 22111   1112222221         15556666543          468999988776432


Q ss_pred             ecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCC-cEEecccCCCCCCCceeEEEE--CCEEEEEEe
Q 046684          185 IGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESN-TWRELSAPMADRLEFATLVSR--NQKLTLIGG  260 (373)
Q Consensus       185 ~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~-~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg  260 (373)
                      .-...        ...-..+++. +|...+. +.....+..||+.++ ..... .. .....-..+...  ++.+++.++
T Consensus        92 ~~~~~--------~~~v~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~-~~-~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           92 DFEAH--------PDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQT-FE-GHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             EEECC--------SSCEEEEEECSSSSEEEE-EETTSEEEEEEGGGTSEEEEE-EE-CCSSCEEEEEEETTEEEEEEEEE
T ss_pred             EEecC--------CCCEEEEEEeCCCCEEEE-EcCCCEEEEEECCCCceEEEE-Ec-CCCCcEEEEEEEcCCCCEEEEEe
Confidence            21110        0001111222 4544444 345678999998876 33222 11 111111223333  345555554


Q ss_pred             ecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec--CCEEEEEEcCCccEEEEEccccCC
Q 046684          261 TCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG--NGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       261 ~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                       .+..+.+|++..  ...............            .......  ++..++.++..+.+.+||.+  ++
T Consensus       161 -~dg~v~vwd~~~--~~~~~~~~~~~~~~v------------~~~~~~~~~~~~~l~~~~~dg~i~~~d~~--~~  218 (814)
T 3mkq_A          161 -LDRTVKVWSLGQ--STPNFTLTTGQERGV------------NYVDYYPLPDKPYMITASDDLTIKIWDYQ--TK  218 (814)
T ss_dssp             -TTSEEEEEETTC--SSCSEEEECCCTTCC------------CEEEECCSTTCCEEEEECTTSEEEEEETT--TT
T ss_pred             -CCCeEEEEECCC--CcceeEEecCCCCCE------------EEEEEEECCCCCEEEEEeCCCEEEEEECC--CC
Confidence             445588999865  223332221111111            1223333  56677777777889999998  77

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.31  E-value=1.2  Score=37.87  Aligned_cols=147  Identities=14%  Similarity=0.159  Sum_probs=74.5

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--C--CEEEEEEcCCceEEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--R--GMLYWITSARAYSVIGF  225 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~--g~ly~~gg~~~~~i~~y  225 (373)
                      +++++.|+.+          ..+.+||..++.|..+..+..      . ......+.+  +  |.+.+.+ .....|..+
T Consensus        67 g~~l~s~s~D----------~~v~iWd~~~~~~~~~~~~~~------h-~~~v~~v~~~p~~~g~~l~s~-s~d~~v~~w  128 (297)
T 2pm7_B           67 GTILASCSYD----------GKVMIWKEENGRWSQIAVHAV------H-SASVNSVQWAPHEYGPMLLVA-SSDGKVSVV  128 (297)
T ss_dssp             CSEEEEEETT----------TEEEEEEBSSSCBCCCEEECC------C-SSCEEEEEECCGGGCSEEEEE-ETTSEEEEE
T ss_pred             CCEEEEEcCC----------CEEEEEEcCCCceEEEEEeec------C-CCceeEEEeCcCCCCcEEEEE-ECCCcEEEE
Confidence            3456666554          468899998887765432210      0 011111222  1  4444443 456778888


Q ss_pred             ECCCCc-EEecccCCCCCCCceeEEEE---------------CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechh
Q 046684          226 DIESNT-WRELSAPMADRLEFATLVSR---------------NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIE  289 (373)
Q Consensus       226 d~~~~~-w~~~~~~~p~~~~~~~~~~~---------------~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~  289 (373)
                      |+.++. +...  ....+......+..               ++++++.++ .+..+.+|+++.  ....|..+..+..-
T Consensus       129 d~~~~~~~~~~--~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~--~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          129 EFKENGTTSPI--IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNS--DAQTYVLESTLEGH  203 (297)
T ss_dssp             EBCSSSCBCCE--EEECCSSCEEEEEECCCC------------CCEEEEEE-TTSCEEEEEEET--TTTEEEEEEEECCC
T ss_pred             EecCCCceeee--eeecccCccceEeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcC--CCceEEEEEEecCC
Confidence            887652 2111  11111111111111               134555554 444589999986  44557666555421


Q ss_pred             hhhhhcCCCCCCCceEEEec-C---CEEEEEEcCCccEEEEEcc
Q 046684          290 MGMRLSGGKASWGGTRCAAG-N---GAICLYREVGLGMIIWRED  329 (373)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~-~---~~i~~~~~~~~~~~~yd~~  329 (373)
                      ...          ...+... +   +.+++.++.++.+.+||.+
T Consensus       204 ~~~----------V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          204 SDW----------VRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             SSC----------EEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             CCc----------eEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence            100          1222222 2   4777788888889999998

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.30  E-value=0.42  Score=40.87  Aligned_cols=100  Identities=7%  Similarity=0.115  Sum_probs=50.3

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +.+.+. +.....|..+|+.+.+-...   +..+......+.  -++.+++.++ .+..+.+|++..      .+.+..+
T Consensus       198 ~~~l~s-~s~D~~i~iWd~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s-~Dg~i~iWd~~~------~~~~~~~  266 (304)
T 2ynn_A          198 KPYMIT-ASDDLTIKIWDYQTKSCVAT---LEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSST------YKVEKTL  266 (304)
T ss_dssp             CCEEEE-EETTSEEEEEETTTTEEEEE---EECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTT------CCEEEEE
T ss_pred             CCEEEE-EcCCCeEEEEeCCCCcccee---eCCCCCCEEEEEECCCCCEEEEEc-CCCeEEEEECCC------Cceeeec
Confidence            334444 44567899999987653322   122222222222  2455555544 445589999854      3444444


Q ss_pred             chhhhhhhcCCCCCCCceEEE--ecCCEEEEEEcCCccEEEEEcc
Q 046684          287 PIEMGMRLSGGKASWGGTRCA--AGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ......          ...+.  ..++..++..+..+.+.+++..
T Consensus       267 ~~~~~~----------~~~~~~~~~~~~~~~asg~~~g~~~~~~~  301 (304)
T 2ynn_A          267 NVGLER----------SWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (304)
T ss_dssp             CCSSSS----------EEEEEECTTCGGGCEEEEETTEEEEEECC
T ss_pred             cCCCcc----------EEEEEECCCCCceEEEEecCCceEEEEec
Confidence            322110          12222  2244555555555677777776

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.30  E-value=1.7  Score=42.78  Aligned_cols=193  Identities=10%  Similarity=0.030  Sum_probs=98.8

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|.|++...   ..-+.++|+.+++++..............++..+.   +     +.|++ |...          ..+.
T Consensus       373 ~g~lWigt~---~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~---~-----g~lWi-gt~~----------~Gl~  430 (781)
T 3v9f_A          373 QGKLWIGTD---GGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS---E-----GNLWF-GTYL----------GNIS  430 (781)
T ss_dssp             TSCEEEEEB---SSCEEEEETTEEEEECC-----CCCSBEEEEEECT---T-----SCEEE-EETT----------EEEE
T ss_pred             CCCEEEEeC---CCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC---C-----CCEEE-Eecc----------CCEE
Confidence            477887652   23488999999887765321111111122333321   1     56776 3221          3588


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCC-C---CCCcee
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMA-D---RLEFAT  247 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p-~---~~~~~~  247 (373)
                      .||..+++++......      ... ........  +|.+++. ..  ..+..||+.+++|.... ..+ .   ......
T Consensus       431 ~~~~~~~~~~~~~~~~------~~~-~~v~~i~~d~~g~lwig-t~--~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          431 YYNTRLKKFQIIELEK------NEL-LDVRVFYEDKNKKIWIG-TH--AGVFVIDLASKKVIHHY-DTSNSQLLENFVRS  499 (781)
T ss_dssp             EECSSSCEEEECCSTT------TCC-CCEEEEEECTTSEEEEE-ET--TEEEEEESSSSSCCEEE-CTTTSSCSCSCEEE
T ss_pred             EEcCCCCcEEEeccCC------CCC-CeEEEEEECCCCCEEEE-EC--CceEEEeCCCCeEEecc-cCcccccccceeEE
Confidence            9999999888765310      000 11111223  4666654 33  67999999999887662 221 1   111122


Q ss_pred             EEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe-cCCEEEEEEcCCccE-E
Q 046684          248 LVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA-GNGAICLYREVGLGM-I  324 (373)
Q Consensus       248 ~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~  324 (373)
                      +.. .+|.|++...  +..+..++.    ++++++.... +...    ...    ....+.. .++.|++...  ..+ .
T Consensus       500 i~~d~~g~lWigt~--~~Gl~~~~~----~~~~~~~~~~-~~~l----~~~----~i~~i~~d~~g~lWi~T~--~Glv~  562 (781)
T 3v9f_A          500 IAQDSEGRFWIGTF--GGGVGIYTP----DMQLVRKFNQ-YEGF----CSN----TINQIYRSSKGQMWLATG--EGLVC  562 (781)
T ss_dssp             EEECTTCCEEEEES--SSCEEEECT----TCCEEEEECT-TTTC----SCS----CEEEEEECTTSCEEEEET--TEEEE
T ss_pred             EEEcCCCCEEEEEc--CCCEEEEeC----CCCeEEEccC-CCCC----CCC----eeEEEEECCCCCEEEEEC--CCceE
Confidence            222 3677777542  122344444    3466665432 1100    000    0122333 4678888554  356 8


Q ss_pred             EEEccccCCcccEEEe
Q 046684          325 IWREDEDKRKWEWVWV  340 (373)
Q Consensus       325 ~yd~~~~~~~~~W~~~  340 (373)
                      .||++  ++  +++..
T Consensus       563 ~~d~~--~~--~~~~~  574 (781)
T 3v9f_A          563 FPSAR--NF--DYQVF  574 (781)
T ss_dssp             ESCTT--TC--CCEEE
T ss_pred             EECCC--CC--cEEEc
Confidence            99999  88  66655

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=95.19  E-value=1.4  Score=38.06  Aligned_cols=174  Identities=11%  Similarity=0.021  Sum_probs=89.3

Q ss_pred             eEEEEEcCcccceecc-CCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCC----Cc
Q 046684          107 LQLVLCNPFTRQFRYL-PLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRH----DA  181 (373)
Q Consensus       107 ~~~~v~np~t~~w~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~----~~  181 (373)
                      ..+...|+.+++...+ +.+.    . ..++..+..  +     ++||+....          ...+.+++..+    ..
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~----~-p~g~~~d~~--~-----~~ly~~D~~----------~~~I~~~~~~g~~~~~~   67 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLR----N-VVALDTEVA--S-----NRIYWSDLS----------QRMICSTQLDRAHGVSS   67 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCS----S-EEEEEEETT--T-----TEEEEEETT----------TTEEEEEEC--------
T ss_pred             CeEEEEECCCcceEehhcCCC----c-eEEEEEEeC--C-----CEEEEEECC----------CCcEEEEECCCCCCCcc
Confidence            5678888888776554 3221    1 122222211  1     678887533          24688888765    22


Q ss_pred             eeeecCCCccccccceeccCCceEE--ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEE
Q 046684          182 WQIIGSMPVEFAVRLTVWTPNESVC--TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTL  257 (373)
Q Consensus       182 W~~~~~~p~~~~~~~~~~~~~~~~~--~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~  257 (373)
                      -+.+....        .......++  .++.|||.. .....|.++|+....-..+ ...... .-.++++  .+|.||+
T Consensus        68 ~~~~~~~~--------~~~p~glavd~~~~~ly~~d-~~~~~I~~~~~~g~~~~~~-~~~~~~-~P~~iavdp~~g~ly~  136 (316)
T 1ijq_A           68 YDTVISRD--------IQAPDGLAVDWIHSNIYWTD-SVLGTVSVADTKGVKRKTL-FRENGS-KPRAIVVDPVHGFMYW  136 (316)
T ss_dssp             CEEEECSS--------CSCCCEEEEETTTTEEEEEE-TTTTEEEEEETTSSSEEEE-EECTTC-CEEEEEEETTTTEEEE
T ss_pred             cEEEEeCC--------CCCcCEEEEeecCCeEEEEE-CCCCEEEEEeCCCCceEEE-EECCCC-CcceEEeCCCCCEEEE
Confidence            22221100        011123344  368999984 4467899999987654444 221111 1123444  3788998


Q ss_pred             EEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEcc
Q 046684          258 IGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       258 ~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .......  .|+..+.  +...=+.+...  ..          ..+..++.  .++.||+.+.....|..+|++
T Consensus       137 ~d~~~~~--~I~~~~~--dG~~~~~~~~~--~~----------~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d  194 (316)
T 1ijq_A          137 TDWGTPA--KIKKGGL--NGVDIYSLVTE--NI----------QWPNGITLDLLSGRLYWVDSKLHSISSIDVN  194 (316)
T ss_dssp             EECSSSC--EEEEEET--TSCCEEEEECS--SC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EccCCCC--eEEEEcC--CCCCeEEEEEC--CC----------CCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence            8632212  4555543  22222222111  10          01333444  478999999887889999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=95.16  E-value=1.4  Score=38.05  Aligned_cols=190  Identities=7%  Similarity=-0.028  Sum_probs=89.7

Q ss_pred             eEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eee
Q 046684          107 LQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQI  184 (373)
Q Consensus       107 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~  184 (373)
                      ..+.++|+.+++....-.. .....+....+. +   +     +++|+.....          ..+.+||...+.  -..
T Consensus        69 ~~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d-~---~-----g~l~v~d~~~----------~~v~~~~~~g~~~~~~~  128 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGK-NLFYLPHGLSID-T---D-----GNYWVTDVAL----------HQVFKLDPHSKEGPLLI  128 (329)
T ss_dssp             CCEEEECTTTCCEEEEECT-TTCSSEEEEEEC-T---T-----SCEEEEETTT----------TEEEEECTTCSSCCSEE
T ss_pred             CcEEEEECCCCeEEeccCC-CccCCceEEEEC-C---C-----CCEEEEECCC----------CEEEEEeCCCCeEEEEE
Confidence            3689999988876432110 111112222222 1   1     6688875332          468889886542  122


Q ss_pred             ecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCC------CCCCC-ceeEEEE-C-C
Q 046684          185 IGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPM------ADRLE-FATLVSR-N-Q  253 (373)
Q Consensus       185 ~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~------p~~~~-~~~~~~~-~-g  253 (373)
                      +......-...........+++-  +|.+|+..+.....|..||+....-..+...-      +.... -.+++.. + |
T Consensus       129 ~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g  208 (329)
T 3fvz_A          129 LGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD  208 (329)
T ss_dssp             ESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT
T ss_pred             ecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC
Confidence            22110000000000111223333  58999985335788999996655444441111      11111 1234443 4 7


Q ss_pred             EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc-------CCccEEEE
Q 046684          254 KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE-------VGLGMIIW  326 (373)
Q Consensus       254 ~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~y  326 (373)
                      .||+.... ...+.+|+++.    .+...  .+......        .....+....+.++...+       ....+.++
T Consensus       209 ~l~v~d~~-~~~I~~~~~~~----G~~~~--~~~~~~~~--------~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~  273 (329)
T 3fvz_A          209 QLCVADRE-NGRIQCFKTDT----KEFVR--EIKHASFG--------RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVM  273 (329)
T ss_dssp             EEEEEETT-TTEEEEEETTT----CCEEE--EECCTTTT--------TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEE
T ss_pred             EEEEEECC-CCEEEEEECCC----CcEEE--EEeccccC--------CCcceeeecCCEEEEeCCCEEeccCCCcEEEEE
Confidence            88888643 33467777653    44333  33211110        001222222355555443       33479999


Q ss_pred             EccccCC
Q 046684          327 REDEDKR  333 (373)
Q Consensus       327 d~~~~~~  333 (373)
                      |..  ++
T Consensus       274 ~~~--~g  278 (329)
T 3fvz_A          274 NFS--SG  278 (329)
T ss_dssp             ETT--TC
T ss_pred             EcC--CC
Confidence            988  77

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.15  E-value=1.4  Score=37.97  Aligned_cols=189  Identities=9%  Similarity=0.023  Sum_probs=87.4

Q ss_pred             ceEEEEEcCcccc--eeccCCCCCCCCCCeEEEE-EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCce
Q 046684          106 ILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIV-MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW  182 (373)
Q Consensus       106 ~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~-~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W  182 (373)
                      ...+.+||..+++  ...+.............+. ......+     +++++.|+.+          ..+.+||..++.=
T Consensus       138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~l~~~~~d----------~~i~i~d~~~~~~  202 (357)
T 3i2n_A          138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE-----ERVVCAGYDN----------GDIKLFDLRNMAL  202 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C-----CCEEEEEETT----------SEEEEEETTTTEE
T ss_pred             CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC-----CCEEEEEccC----------CeEEEEECccCce
Confidence            4679999998875  2333332221111112221 1111112     5666666553          4689999987663


Q ss_pred             eeecCCCccccccceeccCCceEEE----CCEEEEEEcCCceEEEEEECCCCcEEeccc--CCCCCCCc-eeEEEE-CCE
Q 046684          183 QIIGSMPVEFAVRLTVWTPNESVCT----RGMLYWITSARAYSVIGFDIESNTWRELSA--PMADRLEF-ATLVSR-NQK  254 (373)
Q Consensus       183 ~~~~~~p~~~~~~~~~~~~~~~~~~----~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~--~~p~~~~~-~~~~~~-~g~  254 (373)
                      .......         .....+++.    ++...+.+ .....+..||+.+++-...-.  ........ ..+... ++.
T Consensus       203 ~~~~~~~---------~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          203 RWETNIK---------NGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             EEEEECS---------SCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred             eeecCCC---------CceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC
Confidence            2221111         011112222    45555554 345678888886542111000  00011111 223333 455


Q ss_pred             EEEEEeecCCceEEEEeecCCC-------------CCCeEEEEeechhhhhhhcCCCCCCCceEEE-ecCC-EEEEEEcC
Q 046684          255 LTLIGGTCGGDACVWELSEGGD-------------DDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-AGNG-AICLYREV  319 (373)
Q Consensus       255 l~~~gg~~~~~~~i~~~~~~~~-------------~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~-~i~~~~~~  319 (373)
                      -+++.+..+..+.+|+++....             ...+..+..+......          ...+. ..++ .|++.++.
T Consensus       273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~s~~~  342 (357)
T 3i2n_A          273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP----------ISSLDWSPDKRGLCVCSSF  342 (357)
T ss_dssp             EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC----------EEEEEECSSSTTEEEEEET
T ss_pred             cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC----------eeEEEEcCCCCeEEEEecC
Confidence            3444444555689999975100             0123444443321100          12222 2234 44446777


Q ss_pred             CccEEEEEcc
Q 046684          320 GLGMIIWRED  329 (373)
Q Consensus       320 ~~~~~~yd~~  329 (373)
                      .+.+.+||..
T Consensus       343 d~~i~iw~~~  352 (357)
T 3i2n_A          343 DQTVRVLIVT  352 (357)
T ss_dssp             TSEEEEEEEC
T ss_pred             CCcEEEEECC
Confidence            7789999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.15  E-value=1.8  Score=39.18  Aligned_cols=73  Identities=8%  Similarity=0.052  Sum_probs=46.4

Q ss_pred             CCEEEEEEeecC------CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcCCccEE
Q 046684          252 NQKLTLIGGTCG------GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREVGLGMI  324 (373)
Q Consensus       252 ~g~l~~~gg~~~------~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~  324 (373)
                      +++||+......      ..-.++.++.    .+++.+..++.+....         ...+...+. .+|+.+..++.+.
T Consensus       330 g~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~vg~~P~---------gia~spDg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          330 SDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIELGHEID---------SINVSQDAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             GTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEEEEEEC---------EEEECCSSSCEEEEEETTTTEEE
T ss_pred             CCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEECCCCcC---------eEEEccCCCEEEEEEcCCCCeEE
Confidence            478898864321      1236777766    7788888887654221         233333455 6887776778999


Q ss_pred             EEEccccCCcccEEEeccc
Q 046684          325 IWREDEDKRKWEWVWVGGC  343 (373)
Q Consensus       325 ~yd~~~~~~~~~W~~~~~~  343 (373)
                      ++|.+  +.    +.+...
T Consensus       397 VID~~--t~----kvv~tI  409 (426)
T 3c75_H          397 IYDAA--TG----EELRSV  409 (426)
T ss_dssp             EEETT--TC----CEEEEE
T ss_pred             EEECC--CC----CEEEEe
Confidence            99999  55    555443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.12  E-value=0.53  Score=42.05  Aligned_cols=175  Identities=8%  Similarity=-0.001  Sum_probs=92.6

Q ss_pred             eEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeec
Q 046684          107 LQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIG  186 (373)
Q Consensus       107 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~  186 (373)
                      ..+...++.+++...+..-   ... ..++..+..  +     ++||..-..          ...++.++..++..+.+.
T Consensus        96 ~~I~~i~~~~~~~~~~~~~---~~~-~~gl~~d~~--~-----~~ly~~D~~----------~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNN---LEN-AIALDFHHR--R-----ELVFWSDVT----------LDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SCEEEECTTSCCCEEEECS---CSC-EEEEEEETT--T-----TEEEEEETT----------TTEEEEEETTSCCEEEEE
T ss_pred             ccceeeccCCCcEEEEecC---CCc-cEEEEEecC--C-----CeEEEEeCC----------CCcEEEEecCCCCcEEEE
Confidence            5678888877666543221   111 222222211  1     778887422          246888988877655443


Q ss_pred             CCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeec
Q 046684          187 SMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTC  262 (373)
Q Consensus       187 ~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~  262 (373)
                      ...        .......++-  ++.|||.. .....|.++++....-..+ ...... .-.++++-  +|.||+.....
T Consensus       155 ~~~--------~~~p~glavd~~~g~lY~~d-~~~~~I~~~~~dg~~~~~l-~~~~l~-~P~giavdp~~g~ly~td~~~  223 (386)
T 3v65_B          155 STG--------LESPGGLAVDWVHDKLYWTD-SGTSRIEVANLDGAHRKVL-LWQSLE-KPRAIALHPMEGTIYWTDWGN  223 (386)
T ss_dssp             CSS--------CSCCCCEEEETTTTEEEEEE-TTTTEEEECBTTSCSCEEE-ECSSCS-CEEEEEEETTTTEEEEEECSS
T ss_pred             eCC--------CCCccEEEEEeCCCeEEEEc-CCCCeEEEEeCCCCceEEe-ecCCCC-CCcEEEEEcCCCeEEEeccCC
Confidence            211        0011223333  68999994 4456899999876544433 221111 11234443  68899876432


Q ss_pred             CCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEcc
Q 046684          263 GGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       263 ~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ..  .|+..+.  +...=+.+..  ...          ..+..++.  .++.||+.+.....|..+|++
T Consensus       224 ~~--~I~r~~~--dG~~~~~~~~--~~~----------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d  276 (386)
T 3v65_B          224 TP--RIEASSM--DGSGRRIIAD--THL----------FWPNGLTIDYAGRRMYWVDAKHHVIERANLD  276 (386)
T ss_dssp             SC--EEEEEET--TSCSCEEEEC--SSC----------SCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred             CC--EEEEEeC--CCCCcEEEEE--CCC----------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            12  4555554  2222222211  110          01233333  588999998887889999987

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.03  E-value=0.26  Score=48.47  Aligned_cols=172  Identities=15%  Similarity=0.180  Sum_probs=89.7

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--C--CEEEEEEcCCceEEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--R--GMLYWITSARAYSVIGF  225 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~--g~ly~~gg~~~~~i~~y  225 (373)
                      ++.++.|+.+          ..+.+||..+++++.+..+..       .......+.+  +  |.+.+.+ ...+.|..+
T Consensus        21 g~~latg~~d----------g~I~vwd~~~~~~~~~~~l~~-------h~~~V~~l~~s~~~~~~~l~s~-s~Dg~I~vw   82 (753)
T 3jro_A           21 GKRLATCSSD----------KTIKIFEVEGETHKLIDTLTG-------HEGPVWRVDWAHPKFGTILASC-SYDGKVLIW   82 (753)
T ss_dssp             SCCEEEEETT----------TEEEEEEEETTEEEEEEEECC-------CSSCEEEEEECCTTSCSEEEEE-ETTSCEEEE
T ss_pred             CCeEEEEECC----------CcEEEEecCCCCCccceeccC-------CcCceEEEEecCCCCCCEEEEE-eCCCeEEEE
Confidence            5556666554          468889888777766544421       0111112222  2  5555553 446779999


Q ss_pred             ECCCCcEEecccCCCCCCCceeEEEE--C--CEEEEEEeecCCceEEEEeecCCCCCC-eEEEEeechhhhhhhcCCCCC
Q 046684          226 DIESNTWRELSAPMADRLEFATLVSR--N--QKLTLIGGTCGGDACVWELSEGGDDDI-WCLIEKVPIEMGMRLSGGKAS  300 (373)
Q Consensus       226 d~~~~~w~~~~~~~p~~~~~~~~~~~--~--g~l~~~gg~~~~~~~i~~~~~~~~~~~-W~~v~~~p~~~~~~~~~~~~~  300 (373)
                      |+.++++..+ ............+..  +  +.+++.++ .+..+.+|++..  .... -..+...+...          
T Consensus        83 d~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~~~l~sgs-~dg~I~vwdl~~--~~~~~~~~~~~~~~~v----------  148 (753)
T 3jro_A           83 KEENGRWSQI-AVHAVHSASVNSVQWAPHEYGPLLLVAS-SDGKVSVVEFKE--NGTTSPIIIDAHAIGV----------  148 (753)
T ss_dssp             EEETTEEEEE-EEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEECCS--SSCCCCEEEECCSSCE----------
T ss_pred             ECCCCccccc-ccccCCCCCeEEEEECCCCCCCEEEEEe-CCCcEEEEEeec--CCCcceeEeecCCCce----------
Confidence            9999887666 333333333333333  3  56666665 444589999976  2111 11111111111          


Q ss_pred             CCceEEEec--------------CCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684          301 WGGTRCAAG--------------NGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS  364 (373)
Q Consensus       301 ~~~~~~~~~--------------~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~  364 (373)
                         ..+...              ++.+++.++..+.+.+||.+  ++...+..+..  +.++..    ....+.|.|.
T Consensus       149 ---~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~~--~~~h~~----~V~~l~~sp~  215 (753)
T 3jro_A          149 ---NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--SDAQTYVLEST--LEGHSD----WVRDVAWSPT  215 (753)
T ss_dssp             ---EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE--TTTTEEEEEEE--ECCCSS----CEEEEEECCC
T ss_pred             ---EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc--CCcccceeeee--ecCCCC----cEEEEEeccC
Confidence               111111              35677777777889999998  65324544332  222222    3445566665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=94.96  E-value=1.5  Score=37.21  Aligned_cols=196  Identities=8%  Similarity=-0.007  Sum_probs=98.0

Q ss_pred             eCcEEEEe-------eCCCCceEEEEEcCcccceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCc-eEEEEEeccCCCCC
Q 046684           93 IGSFLLLR-------PINSTILQLVLCNPFTRQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPN-FRIYVAGGMSDEPR  163 (373)
Q Consensus        93 ~~g~l~~~-------gg~~~~~~~~v~np~t~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~-~kl~~~gg~~~~~~  163 (373)
                      .+|.+|+.       +.  ....+.+||+.+++++.+.... .........+..++        + +++|+....     
T Consensus        27 ~~g~l~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~--------~~g~l~v~~~~-----   91 (314)
T 1pjx_A           27 KNGDFYIVAPEVEVNGK--PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--------DANQLFVADMR-----   91 (314)
T ss_dssp             TTSCEEEEETTCEETTE--ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--------SSSEEEEEETT-----
T ss_pred             CCCCEEEEEeccccCCC--CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec--------CCCcEEEEECC-----
Confidence            46777776       22  1457999999998876553210 00001112222221        2 567876521     


Q ss_pred             CCCcccceEEEEECCCCceeee-cCCCccccccceeccCCceEE-ECCEEEEEEcCC--------------ceEEEEEEC
Q 046684          164 GGATYESMVEMYDSRHDAWQII-GSMPVEFAVRLTVWTPNESVC-TRGMLYWITSAR--------------AYSVIGFDI  227 (373)
Q Consensus       164 ~~~~~~~~~~~yd~~~~~W~~~-~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~--------------~~~i~~yd~  227 (373)
                            ..+.+||.. ++.+.+ ...+..    ........++. -+|.+|+.....              ...++.||+
T Consensus        92 ------~~l~~~d~~-g~~~~~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (314)
T 1pjx_A           92 ------LGLLVVQTD-GTFEEIAKKDSEG----RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             ------TEEEEEETT-SCEEECCSBCTTS----CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             ------CCEEEEeCC-CCEEEEEeccCCC----ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence                  258899988 776655 322110    00111122222 257888775322              268999998


Q ss_pred             CCCcEEecccCCCCCCCceeEEEE-----CC-EEEEEEeecCCceEEEEeecCCCCCCeEEE---EeechhhhhhhcCCC
Q 046684          228 ESNTWRELSAPMADRLEFATLVSR-----NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLI---EKVPIEMGMRLSGGK  298 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~-----~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v---~~~p~~~~~~~~~~~  298 (373)
                      . ++...+.....   ....++..     +| .||+... ....+.+|+++.   +.+....   ..++.....      
T Consensus       161 ~-g~~~~~~~~~~---~~~~i~~~~~~d~dg~~l~v~~~-~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~------  226 (314)
T 1pjx_A          161 D-GQMIQVDTAFQ---FPNGIAVRHMNDGRPYQLIVAET-PTKKLWSYDIKG---PAKIENKKVWGHIPGTHEG------  226 (314)
T ss_dssp             T-SCEEEEEEEES---SEEEEEEEECTTSCEEEEEEEET-TTTEEEEEEEEE---TTEEEEEEEEEECCCCSSC------
T ss_pred             C-CCEEEeccCCC---CcceEEEecccCCCCCEEEEEEC-CCCeEEEEECCC---CCccccceEEEECCCCCCC------
Confidence            7 66554411111   11233333     34 4566542 333466777652   1333322   222211000      


Q ss_pred             CCCCceE-EEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          299 ASWGGTR-CAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       299 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                         .+.. +...++.||+.....+.+.+||++  ++
T Consensus       227 ---~p~~i~~d~~G~l~v~~~~~~~i~~~d~~--~g  257 (314)
T 1pjx_A          227 ---GADGMDFDEDNNLLVANWGSSHIEVFGPD--GG  257 (314)
T ss_dssp             ---EEEEEEEBTTCCEEEEEETTTEEEEECTT--CB
T ss_pred             ---CCCceEECCCCCEEEEEcCCCEEEEEcCC--CC
Confidence               0222 333467899887666689999998  66

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=94.89  E-value=2.9  Score=40.30  Aligned_cols=152  Identities=11%  Similarity=0.046  Sum_probs=72.9

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceE-EEEEeccCCCCCCCCcccceEEEEECCCC-cee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFR-IYVAGGMSDEPRGGATYESMVEMYDSRHD-AWQ  183 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~k-l~~~gg~~~~~~~~~~~~~~~~~yd~~~~-~W~  183 (373)
                      ...++++|..+++...+........ ....+...+.        ++ |++.. .+     .......+.++|..++ ..+
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spd--------g~~l~~~~-~~-----~~~~~~~v~~~d~~~g~~~~  298 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPKEK-FLTNLSWSPD--------ENILYVAE-VN-----RAQNECKVNAYDAETGRFVR  298 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCTTC-EEEEEEECTT--------SSEEEEEE-EC-----TTSCEEEEEEEETTTCCEEE
T ss_pred             eeEEEEEECCCCceEeeccCCCCce-eEeeEEEECC--------CCEEEEEE-eC-----CCCCeeEEEEEECCCCceee
Confidence            4679999999987665543211111 1111222111        44 44433 32     2233467899999888 666


Q ss_pred             eecCCCccccccceec-cCCceEE-E--CCEEEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CC-EE
Q 046684          184 IIGSMPVEFAVRLTVW-TPNESVC-T--RGMLYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQ-KL  255 (373)
Q Consensus       184 ~~~~~p~~~~~~~~~~-~~~~~~~-~--~g~ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g-~l  255 (373)
                      .+.....     .... ....+++ -  +|++.+.+.. ....++.+|...+....+ ....  .........  +| .|
T Consensus       299 ~~~~~~~-----~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~~--~~v~~~~~~spdg~~l  370 (706)
T 2z3z_A          299 TLFVETD-----KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKGE--WEVTNFAGFDPKGTRL  370 (706)
T ss_dssp             EEEEEEC-----SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCSS--SCEEEEEEECTTSSEE
T ss_pred             EEEEccC-----CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCCC--eEEEeeeEEcCCCCEE
Confidence            5532100     0000 0012233 2  6776655422 245788888777777666 2211  111111222  44 45


Q ss_pred             EEEEeecCC-ceEEEEeecCCCCCCeEE
Q 046684          256 TLIGGTCGG-DACVWELSEGGDDDIWCL  282 (373)
Q Consensus       256 ~~~gg~~~~-~~~i~~~~~~~~~~~W~~  282 (373)
                      ++.+..... ...+|..+.  ++...+.
T Consensus       371 ~~~~~~~~~~~~~l~~~d~--~~~~~~~  396 (706)
T 2z3z_A          371 YFESTEASPLERHFYCIDI--KGGKTKD  396 (706)
T ss_dssp             EEEESSSCTTCBEEEEEET--TCCCCEE
T ss_pred             EEEecCCCCceEEEEEEEc--CCCCcee
Confidence            555543321 256777765  3444333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=94.80  E-value=0.9  Score=39.99  Aligned_cols=144  Identities=7%  Similarity=-0.048  Sum_probs=74.4

Q ss_pred             EEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECC
Q 046684          151 RIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       151 kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      ++++.|+.+          ..+.+||..++..........      ....-..+++.  ++.+.+. +.....|..+|+.
T Consensus        87 ~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s-~~~d~~i~iwd~~  149 (383)
T 3ei3_B           87 TTVAVGSKG----------GDIILWDYDVQNKTSFIQGMG------PGDAITGMKFNQFNTNQLFV-SSIRGATTLRDFS  149 (383)
T ss_dssp             TEEEEEEBT----------SCEEEEETTSTTCEEEECCCS------TTCBEEEEEEETTEEEEEEE-EETTTEEEEEETT
T ss_pred             CEEEEEcCC----------CeEEEEeCCCcccceeeecCC------cCCceeEEEeCCCCCCEEEE-EeCCCEEEEEECC
Confidence            466666554          368999998877654433210      00011122333  2344444 3456789999999


Q ss_pred             CCcEEecccCCCCCCC-ceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          229 SNTWRELSAPMADRLE-FATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~~-~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      ++....+ ........ ...+.. -++.+++.++ .+..+.+|++..    ..-..+..-....            ....
T Consensus       150 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~----~~~~~~~~h~~~v------------~~~~  211 (383)
T 3ei3_B          150 GSVIQVF-AKTDSWDYWYCCVDVSVSRQMLATGD-STGRLLLLGLDG----HEIFKEKLHKAKV------------THAE  211 (383)
T ss_dssp             SCEEEEE-ECCCCSSCCEEEEEEETTTTEEEEEE-TTSEEEEEETTS----CEEEEEECSSSCE------------EEEE
T ss_pred             CCceEEE-eccCCCCCCeEEEEECCCCCEEEEEC-CCCCEEEEECCC----CEEEEeccCCCcE------------EEEE
Confidence            8777666 22221111 122222 2566555554 445588999843    2222211111100            1222


Q ss_pred             EecCCE-EEEEEcCCccEEEEEcc
Q 046684          307 AAGNGA-ICLYREVGLGMIIWRED  329 (373)
Q Consensus       307 ~~~~~~-i~~~~~~~~~~~~yd~~  329 (373)
                      ...++. +++.++.++.+.+||++
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGG
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCC
Confidence            223344 77778777789999998

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.80  E-value=0.85  Score=39.45  Aligned_cols=149  Identities=13%  Similarity=0.111  Sum_probs=71.0

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-C--CEEEEEEcCCceEEEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-R--GMLYWITSARAYSVIGFD  226 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~--g~ly~~gg~~~~~i~~yd  226 (373)
                      +++++.|+.+          ..+.+||..++.|+.+..+..     +.. .-..+.+. +  +...+. +.....|..+|
T Consensus       165 ~~~l~s~s~D----------~~i~iW~~~~~~~~~~~~~~~-----h~~-~v~~~~~~~~~~~~~l~s-~s~D~~v~iw~  227 (330)
T 2hes_X          165 EALLASSSYD----------DTVRIWKDYDDDWECVAVLNG-----HEG-TVWSSDFDKTEGVFRLCS-GSDDSTVRVWK  227 (330)
T ss_dssp             SSEEEEEETT----------SCEEEEEEETTEEEEEEEECC-----CSS-CEEEEEECCSSSSCEEEE-EETTSCEEEEE
T ss_pred             CCEEEEEcCC----------CeEEEEECCCCCeeEEEEccC-----CCC-cEEEEEecCCCCeeEEEE-EeCCCeEEEEE
Confidence            4566666554          357888887777765543310     000 00011121 1  223333 33455666677


Q ss_pred             CCCC------cEEecccCCCC-CCCc-eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCC
Q 046684          227 IESN------TWRELSAPMAD-RLEF-ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGK  298 (373)
Q Consensus       227 ~~~~------~w~~~~~~~p~-~~~~-~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~  298 (373)
                      +.++      .|... ..++. +... ..++...+.+++.++ .+..+.+|+...    ..|..+.........      
T Consensus       228 ~~~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~l~s~~-~dg~v~iw~~~~----~~~~~~~~~~~~h~~------  295 (330)
T 2hes_X          228 YMGDDEDDQQEWVCE-AILPDVHKRQVYNVAWGFNGLIASVG-ADGVLAVYEEVD----GEWKVFAKRALCHGV------  295 (330)
T ss_dssp             EEEECTTSCEEEEEE-EECCSCCSSCEEEEEECTTSCEEEEE-TTSCEEEEEEET----TEEEEEEEESCTTTT------
T ss_pred             ecCCCccccceeEEe-eecccccccceEEEEEcCCCEEEEEe-CCCEEEEEEcCC----CceEEEecccccccc------
Confidence            6432      34443 22222 1111 222223444444444 444589999876    778766543211100      


Q ss_pred             CCCCceEEEe-c--CCEEEEEEcCCccEEEEEcc
Q 046684          299 ASWGGTRCAA-G--NGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       299 ~~~~~~~~~~-~--~~~i~~~~~~~~~~~~yd~~  329 (373)
                        .....+.. .  ++.+++.++.++.+.+||++
T Consensus       296 --~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          296 --YEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             --SCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             --ceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence              00112222 2  46677778888889999987

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=94.79  E-value=1.6  Score=36.82  Aligned_cols=219  Identities=7%  Similarity=-0.088  Sum_probs=107.5

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEE-eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCC--CCCCeEEEEEc
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVS-SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVS--RTNPAVGIVME  139 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~--~~~~~~~~~~~  139 (373)
                      ..++.||+.++ ...+..+.  ....+++ ..+|.+++....  ...+.++|+.+++.+.+......  ...+...... 
T Consensus        50 ~~i~~~~~~~~-~~~~~~~~--~~~~~l~~~~dg~l~v~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-  123 (296)
T 3e5z_A           50 NRTWAWSDDGQ-LSPEMHPS--HHQNGHCLNKQGHLIACSHG--LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA-  123 (296)
T ss_dssp             TEEEEEETTSC-EEEEESSC--SSEEEEEECTTCCEEEEETT--TTEEEEECSTTCCEEEEECEETTEECCCCCCEEEC-
T ss_pred             CEEEEEECCCC-eEEEECCC--CCcceeeECCCCcEEEEecC--CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC-
Confidence            46777888876 44443221  1112233 346777776542  36799999999887665322111  1111112222 


Q ss_pred             CCCCCCCCCceEEEEE----eccCCC---CCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCE
Q 046684          140 GPAQHGPFPNFRIYVA----GGMSDE---PRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGM  210 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~----gg~~~~---~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~  210 (373)
                      +        ++++|+.    |.....   ..........++.++.. ++-+.+....          .....+.+  +|.
T Consensus       124 ~--------~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~----------~~~~gi~~s~dg~  184 (296)
T 3e5z_A          124 P--------DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR----------VKPNGLAFLPSGN  184 (296)
T ss_dssp             T--------TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC----------SSEEEEEECTTSC
T ss_pred             C--------CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC----------CCCccEEECCCCC
Confidence            1        1778886    321100   00001112478888886 5544432210          11112223  577


Q ss_pred             EEEEEcCCceEEEEEECC-CCcE---EecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          211 LYWITSARAYSVIGFDIE-SNTW---RELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       211 ly~~gg~~~~~i~~yd~~-~~~w---~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      +++. ......|..||+. +++.   ..+ ....... -.+++. -+|.||+..   ...+.+|+++.    +.-.. ..
T Consensus       185 ~lv~-~~~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~-p~~i~~d~~G~l~v~~---~~~v~~~~~~g----~~~~~-~~  253 (296)
T 3e5z_A          185 LLVS-DTGDNATHRYCLNARGETEYQGVH-FTVEPGK-TDGLRVDAGGLIWASA---GDGVHVLTPDG----DELGR-VL  253 (296)
T ss_dssp             EEEE-ETTTTEEEEEEECSSSCEEEEEEE-ECCSSSC-CCSEEEBTTSCEEEEE---TTEEEEECTTS----CEEEE-EE
T ss_pred             EEEE-eCCCCeEEEEEECCCCcCcCCCeE-eeCCCCC-CCeEEECCCCCEEEEc---CCeEEEECCCC----CEEEE-EE
Confidence            6644 4556789999986 5555   222 1111111 113333 478888876   33456666532    32222 22


Q ss_pred             echhhhhhhcCCCCCCCceEEE-e-cCCEEEEEEcCCccEEEEEccccCC
Q 046684          286 VPIEMGMRLSGGKASWGGTRCA-A-GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+..  .          ...++ . .++.||+...  ..++.++++  ++
T Consensus       254 ~~~~--~----------~~~~f~~~d~~~L~v~t~--~~l~~~~~~--~~  287 (296)
T 3e5z_A          254 TPQT--T----------SNLCFGGPEGRTLYMTVS--TEFWSIETN--VR  287 (296)
T ss_dssp             CSSC--C----------CEEEEESTTSCEEEEEET--TEEEEEECS--CC
T ss_pred             CCCC--c----------eeEEEECCCCCEEEEEcC--CeEEEEEcc--cc
Confidence            3322  1          12233 2 2457888654  379999998  77

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=94.74  E-value=3  Score=40.27  Aligned_cols=147  Identities=8%  Similarity=-0.062  Sum_probs=71.9

Q ss_pred             cceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCE-EEEEEc---CCceEEEEEECCCC-cEEecccCCCCC
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGM-LYWITS---ARAYSVIGFDIESN-TWRELSAPMADR  242 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~gg---~~~~~i~~yd~~~~-~w~~~~~~~p~~  242 (373)
                      ...++++|..+++-+.+.....     . ......+++ -+|+ +++...   .....+..+|+.++ +...+ ......
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~-----~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~~~  306 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEP-----K-EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL-FVETDK  306 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSC-----T-TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE-EEEECS
T ss_pred             eeEEEEEECCCCceEeeccCCC-----C-ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE-EEccCC
Confidence            4578999998877554432210     0 000011122 2555 555431   12358999999988 66655 221111


Q ss_pred             C----CceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCc-eEEEecCCEEEE
Q 046684          243 L----EFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGG-TRCAAGNGAICL  315 (373)
Q Consensus       243 ~----~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~i~~  315 (373)
                      .    .......-  +|++++.+. .+....+|.++.  +......+   ......        ... ......++.|++
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~-~~g~~~l~~~~~--~~~~~~~l---~~~~~~--------v~~~~~~spdg~~l~~  372 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSR-RDGWNHLYLYDT--TGRLIRQV---TKGEWE--------VTNFAGFDPKGTRLYF  372 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEEC-TTSSCEEEEEET--TSCEEEEC---CCSSSC--------EEEEEEECTTSSEEEE
T ss_pred             CeECccCCceeecCCCCEEEEEEc-cCCccEEEEEEC--CCCEEEec---CCCCeE--------EEeeeEEcCCCCEEEE
Confidence            1    01112233  777555543 333468998874  33333332   221110        001 122233567777


Q ss_pred             EEcCCc----cEEEEEccccCCcccEEEe
Q 046684          316 YREVGL----GMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       316 ~~~~~~----~~~~yd~~~~~~~~~W~~~  340 (373)
                      .+....    .++.+|.+  ++  +.+.+
T Consensus       373 ~~~~~~~~~~~l~~~d~~--~~--~~~~l  397 (706)
T 2z3z_A          373 ESTEASPLERHFYCIDIK--GG--KTKDL  397 (706)
T ss_dssp             EESSSCTTCBEEEEEETT--CC--CCEES
T ss_pred             EecCCCCceEEEEEEEcC--CC--Cceec
Confidence            765543    67778887  77  54444

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.74  E-value=1.9  Score=37.29  Aligned_cols=62  Identities=5%  Similarity=0.136  Sum_probs=31.9

Q ss_pred             CCEEEEEEcCCceEEEEEECCC-CcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeec
Q 046684          208 RGMLYWITSARAYSVIGFDIES-NTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~-~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      ++...+.+ .....|..||+.+ .+-... ..... ..-..+... ++.+++.++ .+..+.+|++..
T Consensus       186 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~  249 (369)
T 3zwl_B          186 KGKYIIAG-HKDGKISKYDVSNNYEYVDS-IDLHE-KSISDMQFSPDLTYFITSS-RDTNSFLVDVST  249 (369)
T ss_dssp             GGCEEEEE-ETTSEEEEEETTTTTEEEEE-EECCS-SCEEEEEECTTSSEEEEEE-TTSEEEEEETTT
T ss_pred             CCCEEEEE-cCCCEEEEEECCCCcEeEEE-EecCC-CceeEEEECCCCCEEEEec-CCceEEEEECCC
Confidence            35555553 4567899999987 332222 11111 111122222 566555554 444578998865

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.73  E-value=1.6  Score=36.37  Aligned_cols=146  Identities=8%  Similarity=-0.035  Sum_probs=77.8

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~  227 (373)
                      ++||+....          ...+.+|+..++.-+.+....        .......++-  ++.+|+.. .....|..+|+
T Consensus        48 ~~ly~~d~~----------~~~I~~~~~~g~~~~~~~~~~--------~~~p~~ia~d~~~~~lyv~d-~~~~~I~~~~~  108 (267)
T 1npe_A           48 KVVYWTDIS----------EPSIGRASLHGGEPTTIIRQD--------LGSPEGIALDHLGRTIFWTD-SQLDRIEVAKM  108 (267)
T ss_dssp             TEEEEEETT----------TTEEEEEESSSCCCEEEECTT--------CCCEEEEEEETTTTEEEEEE-TTTTEEEEEET
T ss_pred             CEEEEEECC----------CCEEEEEecCCCCcEEEEECC--------CCCccEEEEEecCCeEEEEE-CCCCEEEEEEc
Confidence            678887532          246888998765433222110        0011223333  57899984 44678999998


Q ss_pred             CCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceE
Q 046684          228 ESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTR  305 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~  305 (373)
                      ....-..+ .+.... .-.+++..  +|.||+........ .|+.++.  +...-+.+....  . .         .+..
T Consensus       109 ~g~~~~~~-~~~~~~-~P~~i~vd~~~g~lyv~~~~~~~~-~I~~~~~--dg~~~~~~~~~~--~-~---------~P~g  171 (267)
T 1npe_A          109 DGTQRRVL-FDTGLV-NPRGIVTDPVRGNLYWTDWNRDNP-KIETSHM--DGTNRRILAQDN--L-G---------LPNG  171 (267)
T ss_dssp             TSCSCEEE-ECSSCS-SEEEEEEETTTTEEEEEECCSSSC-EEEEEET--TSCCCEEEECTT--C-S---------CEEE
T ss_pred             CCCCEEEE-EECCCC-CccEEEEeeCCCEEEEEECCCCCc-EEEEEec--CCCCcEEEEECC--C-C---------CCcE
Confidence            76543333 221111 11234443  68899987432122 3444433  212222222111  0 0         1233


Q ss_pred             EEe--cCCEEEEEEcCCccEEEEEccccCC
Q 046684          306 CAA--GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       306 ~~~--~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ++.  .++.||+.+...+.|.++|++  ..
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~--g~  199 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPA--QP  199 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT--EE
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecC--CC
Confidence            333  368999999888899999998  54

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=94.71  E-value=2.3  Score=38.22  Aligned_cols=211  Identities=9%  Similarity=-0.008  Sum_probs=106.8

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ..+|.||+....  ...+.++|+.+++...+.....  . ..+++ . +.+       ..+|+.....         ...
T Consensus       139 d~~g~lyv~d~~--~~~I~~id~~~g~~~~~~~~~~--~-~~ia~-~-~~g-------~~l~~~d~~~---------~~~  195 (409)
T 3hrp_A          139 VGNNTVLAYQRD--DPRVRLISVDDNKVTTVHPGFK--G-GKPAV-T-KDK-------QRVYSIGWEG---------THT  195 (409)
T ss_dssp             CSTTEEEEEETT--TTEEEEEETTTTEEEEEEETCC--B-CBCEE-C-TTS-------SEEEEEBSST---------TCE
T ss_pred             eCCCCEEEEecC--CCcEEEEECCCCEEEEeeccCC--C-CceeE-e-cCC-------CcEEEEecCC---------Cce
Confidence            457889998763  4689999999887665533211  1 11222 1 111       4566654322         127


Q ss_pred             EEEEECCCCc-eeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEeccc--CCCCCCCc-
Q 046684          172 VEMYDSRHDA-WQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSA--PMADRLEF-  245 (373)
Q Consensus       172 ~~~yd~~~~~-W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~--~~p~~~~~-  245 (373)
                      +++++..++. .+.+...+.     ........+++.  +|.||+.  .....|..||+++.....+..  ........ 
T Consensus       196 I~~~d~~~~~~~~~~g~~~~-----~~~~~p~~iav~p~~g~lyv~--d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P  268 (409)
T 3hrp_A          196 VYVYMKASGWAPTRIGQLGS-----TFSGKIGAVALDETEEWLYFV--DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNP  268 (409)
T ss_dssp             EEEEEGGGTTCEEEEEECCT-----TSCSCCCBCEECTTSSEEEEE--CTTCEEEEEETTTCCEEEEEECCCCSCCCCSS
T ss_pred             EEEEEcCCCceeEEeeeccc-----hhcCCcEEEEEeCCCCeEEEE--ECCCcEEEEECCCCCEEEEecccccCCCCCCc
Confidence            8888886543 233311110     011122233443  6899995  335689999999876554411  11111112 


Q ss_pred             e-eEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec-hhhhhh-hcCCCCCCCceEEEec-CCEEEEEEc-
Q 046684          246 A-TLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP-IEMGMR-LSGGKASWGGTRCAAG-NGAICLYRE-  318 (373)
Q Consensus       246 ~-~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p-~~~~~~-~~~~~~~~~~~~~~~~-~~~i~~~~~-  318 (373)
                      . +++..  ++.||+..... .  .|+.++.  +.. -..+.... ...+.. .........+..++.. ++.||+.+. 
T Consensus       269 ~~~ia~~p~~g~lyv~d~~~-~--~I~~~~~--~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~  342 (409)
T 3hrp_A          269 GPYLIYYFVDSNFYMSDQNL-S--SVYKITP--DGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF  342 (409)
T ss_dssp             CCEEEEETTTTEEEEEETTT-T--EEEEECT--TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred             cccEEEeCCCCEEEEEeCCC-C--EEEEEec--CCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence            1 45554  58899875322 2  4555544  222 22222211 000000 0000001113444443 667999988 


Q ss_pred             CCccEEEEEccccCCcccEEEecc
Q 046684          319 VGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       319 ~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      ....|..+|+.  ++  +-+.+.+
T Consensus       343 ~~~~I~~~~~~--~G--~v~~~~g  362 (409)
T 3hrp_A          343 KGYCLRKLDIL--DG--YVSTVAG  362 (409)
T ss_dssp             TTCEEEEEETT--TT--EEEEEEE
T ss_pred             CCCEEEEEECC--CC--EEEEEeC
Confidence            78899999977  77  5454433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=94.71  E-value=1.7  Score=36.78  Aligned_cols=228  Identities=8%  Similarity=-0.007  Sum_probs=109.5

Q ss_pred             eeEEEEeCCCCCccccCCCC---CCCCceeEE-eeC-cEEEEeeCCCCceEEEEEcCcccceecc-CCCCCC--CCCCeE
Q 046684           63 LCCYVHNPVSDKWHVLSLDF---LPYPVRPVS-SIG-SFLLLRPINSTILQLVLCNPFTRQFRYL-PLLNVS--RTNPAV  134 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~---~~~~~~~~~-~~~-g~l~~~gg~~~~~~~~v~np~t~~w~~l-p~~~~~--~~~~~~  134 (373)
                      ..+..||+.+.++..+..+.   .......++ ..+ |.+|+...   ...++++|+. ++.+.+ ......  ......
T Consensus        46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~  121 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCND  121 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTEEEEEETT-SCEEECCSBCTTSCBCBCCCE
T ss_pred             CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---CCCEEEEeCC-CCEEEEEeccCCCccccCCcC
Confidence            46778998887776543210   111112233 345 88888775   2479999998 777655 322111  111122


Q ss_pred             EEEEcCCCCCCCCCceEEEEEeccCC-CC----CCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--
Q 046684          135 GIVMEGPAQHGPFPNFRIYVAGGMSD-EP----RGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--  207 (373)
Q Consensus       135 ~~~~~~~~~~~~~~~~kl~~~gg~~~-~~----~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--  207 (373)
                      ... ++   +     +++|+...... ..    .........++.||.. ++.+.+...         .......++.  
T Consensus       122 i~~-d~---~-----g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---------~~~~~~i~~~~~  182 (314)
T 1pjx_A          122 CAF-DY---E-----GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA---------FQFPNGIAVRHM  182 (314)
T ss_dssp             EEE-CT---T-----SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE---------ESSEEEEEEEEC
T ss_pred             EEE-CC---C-----CCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC---------CCCcceEEEecc
Confidence            222 21   1     66887643210 00    0011123468888876 554433210         0011122333  


Q ss_pred             ---CC-EEEEEEcCCceEEEEEECC-CCcEEecc--cCCCCC--CCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCC
Q 046684          208 ---RG-MLYWITSARAYSVIGFDIE-SNTWRELS--APMADR--LEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDD  277 (373)
Q Consensus       208 ---~g-~ly~~gg~~~~~i~~yd~~-~~~w~~~~--~~~p~~--~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~  277 (373)
                         +| .+|+.. .....|..||++ +++.....  ...+..  ..-..++. -+|.||+... ....+.+|+++.    
T Consensus       183 ~d~dg~~l~v~~-~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~-~~~~i~~~d~~~----  256 (314)
T 1pjx_A          183 NDGRPYQLIVAE-TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW-GSSHIEVFGPDG----  256 (314)
T ss_dssp             TTSCEEEEEEEE-TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE-TTTEEEEECTTC----
T ss_pred             cCCCCCEEEEEE-CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc-CCCEEEEEcCCC----
Confidence               34 467663 445789999976 44432110  112211  11122333 3678887753 233456666542    


Q ss_pred             CCeEEEEeechhhhhhhcCCCCCCCceEEEe-cC-CEEEEEEcCCccEEEEEccccCC
Q 046684          278 DIWCLIEKVPIEMGMRLSGGKASWGGTRCAA-GN-GAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       278 ~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+-......+...            ...++. .+ +.||+.+...+.+..||++  ..
T Consensus       257 g~~~~~~~~~~~~------------~~~i~~~~dg~~l~v~~~~~~~l~~~~~~--~~  300 (314)
T 1pjx_A          257 GQPKMRIRCPFEK------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQ--RN  300 (314)
T ss_dssp             BSCSEEEECSSSC------------EEEEEECTTSSEEEEEETTTTEEEEEECS--SC
T ss_pred             CcEeEEEeCCCCC------------ceeEEECCCCCEEEEEeCCCCeEEEEeCC--CC
Confidence            2222222222111            233332 34 4588887776789999998  55

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.69  E-value=1.7  Score=38.91  Aligned_cols=99  Identities=10%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      |.+.+. +.....|..||+.+++-...   +..+.... .+.. -+|+.++.++ .+..+.+|++..   ......+..-
T Consensus       308 g~~l~s-gs~D~~i~iwd~~~~~~~~~---~~~h~~~v~~v~~~~~g~~l~s~s-~D~~i~vwd~~~---~~~~~~~~~h  379 (410)
T 1vyh_C          308 GPFLLS-GSRDKTIKMWDVSTGMCLMT---LVGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWDYKN---KRCMKTLNAH  379 (410)
T ss_dssp             CCEEEE-EETTSEEEEEETTTTEEEEE---EECCSSCEEEEEECSSSSCEEEEE-TTTEEEEECCTT---SCCCEEEECC
T ss_pred             CCEEEE-EeCCCeEEEEECCCCceEEE---EECCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC---CceEEEEcCC
Confidence            444444 44567799999987653222   11111111 2222 2455555544 445589999864   1222222211


Q ss_pred             chhhhhhhcCCCCCCCceEEEe-cCCEEEEEEcCCccEEEEEc
Q 046684          287 PIEMGMRLSGGKASWGGTRCAA-GNGAICLYREVGLGMIIWRE  328 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~  328 (373)
                      ...             ...+.. .++..++.++.++.+.+||.
T Consensus       380 ~~~-------------v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          380 EHF-------------VTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSC-------------EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CCc-------------EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            111             122222 34556666777777888875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.68  E-value=2.3  Score=38.07  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=56.4

Q ss_pred             EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechh
Q 046684          211 LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIE  289 (373)
Q Consensus       211 ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~  289 (373)
                      +...+|.....|..||+.+++-... ...... ........ ++.|++..|..+..+.+|++..      .+.+..+..-
T Consensus       292 la~~~gs~D~~I~iwd~~t~~~~~~-~~~~~~-v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~------~~~v~~l~gH  363 (420)
T 4gga_A          292 LATGGGTSDRHIRIWNVCSGACLSA-VDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPT------MAKVAELKGH  363 (420)
T ss_dssp             EEEEECTTTCEEEEEETTTTEEEEE-EECSSC-EEEEEEETTTTEEEEEECTTTCCEEEEETTT------CCEEEEECCC
T ss_pred             EEEEeecCCCEEEEEeCCcccccee-eccccc-eeeeeecCCCCeEEEEEecCCCEEEEEECCC------CcEEEEEcCC
Confidence            3334455667899999988765443 222111 11112222 3455555565556689998844      4556555321


Q ss_pred             hhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          290 MGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .         ......++..++..++.++.++.|.+||+.
T Consensus       364 ~---------~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          364 T---------SRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             S---------SCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             C---------CCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            0         000122233466777778777789999886

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=94.65  E-value=1.7  Score=36.59  Aligned_cols=195  Identities=12%  Similarity=0.025  Sum_probs=99.3

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      ++.+|+.+..  ...+++||+.++ .+.+....   .. ...+..++   +     +++|+....          ...+.
T Consensus        39 g~~l~~~~~~--~~~i~~~~~~~~-~~~~~~~~---~~-~~~l~~~~---d-----g~l~v~~~~----------~~~i~   93 (296)
T 3e5z_A           39 RSAVIFSDVR--QNRTWAWSDDGQ-LSPEMHPS---HH-QNGHCLNK---Q-----GHLIACSHG----------LRRLE   93 (296)
T ss_dssp             GTEEEEEEGG--GTEEEEEETTSC-EEEEESSC---SS-EEEEEECT---T-----CCEEEEETT----------TTEEE
T ss_pred             CCEEEEEeCC--CCEEEEEECCCC-eEEEECCC---CC-cceeeECC---C-----CcEEEEecC----------CCeEE
Confidence            3336665543  457899999987 54443211   11 12222221   1     667775422          14689


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEE----c------------CCceEEEEEECCCCcEEecc
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWIT----S------------ARAYSVIGFDIESNTWRELS  236 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~g----g------------~~~~~i~~yd~~~~~w~~~~  236 (373)
                      +||..+++.+.+......    ........+++ -+|.+|+..    .            .....|+.+|+. ++...+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~----~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEG----KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI  168 (296)
T ss_dssp             EECSTTCCEEEEECEETT----EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred             EEcCCCCcEEEEeeccCC----CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence            999988887665332110    01111112222 258888862    1            013489999988 5555541


Q ss_pred             cCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCe-EEEEeechhhhhhhcCCCCCCCceEEEecCCEEE
Q 046684          237 APMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIW-CLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAIC  314 (373)
Q Consensus       237 ~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W-~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~  314 (373)
                      ...   ....+++. -+|+++ +.......+.+|+++.   +.+. .....+ ...     .+   .....+...++.||
T Consensus       169 ~~~---~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~---~g~~~~~~~~~-~~~-----~~---~p~~i~~d~~G~l~  232 (296)
T 3e5z_A          169 RDR---VKPNGLAFLPSGNLL-VSDTGDNATHRYCLNA---RGETEYQGVHF-TVE-----PG---KTDGLRVDAGGLIW  232 (296)
T ss_dssp             CCC---SSEEEEEECTTSCEE-EEETTTTEEEEEEECS---SSCEEEEEEEE-CCS-----SS---CCCSEEEBTTSCEE
T ss_pred             cCC---CCCccEEECCCCCEE-EEeCCCCeEEEEEECC---CCcCcCCCeEe-eCC-----CC---CCCeEEECCCCCEE
Confidence            111   11123333 367766 5444444577777752   2444 222222 110     00   00123444577888


Q ss_pred             EEEcCCccEEEEEccccCCcccEEEe
Q 046684          315 LYREVGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       315 ~~~~~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      +..  .+.+.+||++  .+  .-..+
T Consensus       233 v~~--~~~v~~~~~~--g~--~~~~~  252 (296)
T 3e5z_A          233 ASA--GDGVHVLTPD--GD--ELGRV  252 (296)
T ss_dssp             EEE--TTEEEEECTT--SC--EEEEE
T ss_pred             EEc--CCeEEEECCC--CC--EEEEE
Confidence            877  4579999998  66  44444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.60  E-value=0.96  Score=38.46  Aligned_cols=140  Identities=10%  Similarity=-0.025  Sum_probs=75.8

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      +++|.+....          ..++.||+.++.-+... .+.      .   ....+. -+|.+++..   ...|..||++
T Consensus        25 ~~l~~~d~~~----------~~i~~~d~~~~~~~~~~-~~~------~---~~~i~~~~dG~l~v~~---~~~l~~~d~~   81 (297)
T 3g4e_A           25 NSLLFVDIPA----------KKVCRWDSFTKQVQRVT-MDA------P---VSSVALRQSGGYVATI---GTKFCALNWK   81 (297)
T ss_dssp             TEEEEEETTT----------TEEEEEETTTCCEEEEE-CSS------C---EEEEEEBTTSSEEEEE---TTEEEEEETT
T ss_pred             CEEEEEECCC----------CEEEEEECCCCcEEEEe-CCC------c---eEEEEECCCCCEEEEE---CCeEEEEECC
Confidence            6777775332          46889999887654332 110      0   011122 257766552   4689999999


Q ss_pred             CCcEEecccCCCCC--CCc-eeE-EEECCEEEEEEeecC--------CceEEEEeecCCCCCCeEEEEe-echhhhhhhc
Q 046684          229 SNTWRELSAPMADR--LEF-ATL-VSRNQKLTLIGGTCG--------GDACVWELSEGGDDDIWCLIEK-VPIEMGMRLS  295 (373)
Q Consensus       229 ~~~w~~~~~~~p~~--~~~-~~~-~~~~g~l~~~gg~~~--------~~~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~  295 (373)
                      +++++.+ ...+..  ... ..+ +.-+|+||+......        ....+|.++.  + .+-..+.. +..+.     
T Consensus        82 ~g~~~~~-~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~--~-g~~~~~~~~~~~pn-----  152 (297)
T 3g4e_A           82 EQSAVVL-ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP--D-HHVKKYFDQVDISN-----  152 (297)
T ss_dssp             TTEEEEE-EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT--T-SCEEEEEEEESBEE-----
T ss_pred             CCcEEEE-EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC--C-CCEEEEeecccccc-----
Confidence            9988876 332211  111 122 233788887543221        2247888875  2 33333221 21111     


Q ss_pred             CCCCCCCceEEEecCCEEEEEEcCCccEEEEEc
Q 046684          296 GGKASWGGTRCAAGNGAICLYREVGLGMIIWRE  328 (373)
Q Consensus       296 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~  328 (373)
                             .......+..+|+.+...+.|+.||.
T Consensus       153 -------gi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A          153 -------GLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             -------EEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             -------ceEEcCCCCEEEEecCCCCcEEEEec
Confidence                   12222345678888877778888886

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.51  E-value=2.4  Score=37.57  Aligned_cols=105  Identities=9%  Similarity=-0.002  Sum_probs=56.5

Q ss_pred             EEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee-
Q 046684          210 MLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV-  286 (373)
Q Consensus       210 ~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~-  286 (373)
                      .+.+.+ .....|..+|+.+++.... ............+..  +|.+++.++ .+..+.+|++..    .  +.+..+ 
T Consensus       145 ~~l~s~-~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~----~--~~~~~~~  215 (402)
T 2aq5_A          145 NVLLSA-GCDNVILVWDVGTGAAVLT-LGPDVHPDTIYSVDWSRDGALICTSC-RDKRVRVIEPRK----G--TVVAEKD  215 (402)
T ss_dssp             TEEEEE-ETTSCEEEEETTTTEEEEE-ECTTTCCSCEEEEEECTTSSCEEEEE-TTSEEEEEETTT----T--EEEEEEE
T ss_pred             CEEEEE-cCCCEEEEEECCCCCccEE-EecCCCCCceEEEEECCCCCEEEEEe-cCCcEEEEeCCC----C--ceeeeec
Confidence            345453 3456799999998865543 211112222222222  566666654 344589999854    3  333333 


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEE---cCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYR---EVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~yd~~~~~~  333 (373)
                      .....        ......+...++.+++.+   ...+.+.+||.+  +.
T Consensus       216 ~~~~~--------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~--~~  255 (402)
T 2aq5_A          216 RPHEG--------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTK--HL  255 (402)
T ss_dssp             CSSCS--------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETT--BC
T ss_pred             cCCCC--------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCc--cc
Confidence            11100        000233344567777777   567789999998  64

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=94.50  E-value=1.5  Score=41.29  Aligned_cols=106  Identities=4%  Similarity=-0.060  Sum_probs=53.5

Q ss_pred             EEEEEcCCceEEEEEECCCCcEEecccCCCCCC--CceeEEEE-C-CEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          211 LYWITSARAYSVIGFDIESNTWRELSAPMADRL--EFATLVSR-N-QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       211 ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~--~~~~~~~~-~-g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +.+. +.....+..||..+.+-... .......  .-..+... + +.+++.++. +..+.+|++..    .+  .+..+
T Consensus       175 ~l~~-~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~----~~--~~~~~  245 (615)
T 1pgu_A          175 RSMT-VGDDGSVVFYQGPPFKFSAS-DRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFDGKS----GE--FLKYI  245 (615)
T ss_dssp             EEEE-EETTTEEEEEETTTBEEEEE-ECSSSCTTCCEEEEEECSTTCCEEEEEET-TCCEEEEETTT----CC--EEEEC
T ss_pred             EEEE-EeCCCcEEEEeCCCcceeee-ecccCCCCceEEEEEECCCCCCEEEEEeC-CCeEEEEECCC----CC--EeEEe
Confidence            3444 34567888999877654333 1211110  11122222 4 666666554 44579999854    32  33333


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ......+     ... ...+...++..++.++..+.+.+||++  ++
T Consensus       246 ~~~~~~~-----~~~-v~~~~~~~~~~l~~~~~d~~i~~wd~~--~~  284 (615)
T 1pgu_A          246 EDDQEPV-----QGG-IFALSWLDSQKFATVGADATIRVWDVT--TS  284 (615)
T ss_dssp             CBTTBCC-----CSC-EEEEEESSSSEEEEEETTSEEEEEETT--TT
T ss_pred             ccccccc-----CCc-eEEEEEcCCCEEEEEcCCCcEEEEECC--CC
Confidence            1100000     000 122222266677777777789999999  77

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.48  E-value=0.31  Score=43.39  Aligned_cols=107  Identities=7%  Similarity=0.102  Sum_probs=55.0

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCC----CCce-eEEEE-CC-EEEEEEeecCC--ceEEEEeecCCCCCC
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADR----LEFA-TLVSR-NQ-KLTLIGGTCGG--DACVWELSEGGDDDI  279 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~----~~~~-~~~~~-~g-~l~~~gg~~~~--~~~i~~~~~~~~~~~  279 (373)
                      +.+.+.+ .....|..||+.+++-... ...+..    .... .+... ++ .+++.++.++.  .+.+|++..  ....
T Consensus       178 ~~~l~~~-~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~--~~~~  253 (416)
T 2pm9_A          178 AHVFASA-GSSNFASIWDLKAKKEVIH-LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN--ANTP  253 (416)
T ss_dssp             TTEEEEE-SSSSCEEEEETTTTEEEEE-ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS--TTSC
T ss_pred             CcEEEEE-cCCCCEEEEECCCCCcceE-EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC--CCCC
Confidence            4555553 4567799999988765443 222211    1112 22222 33 46666554431  578999865  1111


Q ss_pred             eEEEEeechhhhhhhcCCCCCCCceEEE-ec-CCEEEEEEcCCccEEEEEccccCC
Q 046684          280 WCLIEKVPIEMGMRLSGGKASWGGTRCA-AG-NGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       280 W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      -   ..+..        +... ....+. .. ++.+++.++..+.+.+||++  ++
T Consensus       254 ~---~~~~~--------~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~--~~  295 (416)
T 2pm9_A          254 L---QTLNQ--------GHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPE--SA  295 (416)
T ss_dssp             S---BCCCS--------CCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSS--SC
T ss_pred             c---EEeec--------CccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCC--CC
Confidence            1   11110        0000 012222 22 66777777777789999998  76

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.47  E-value=2.7  Score=40.58  Aligned_cols=111  Identities=12%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP  287 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p  287 (373)
                      +|.+.+.+ .....|..+|+.+.+-...   +........++...+..+++.+.+ ..+.+|+++.    .  +.+..+.
T Consensus       572 dg~~l~sg-~~Dg~i~iwd~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~----~--~~~~~~~  640 (694)
T 3dm0_A          572 DGSLCASG-GKDGVVLLWDLAEGKKLYS---LEANSVIHALCFSPNRYWLCAATE-HGIKIWDLES----K--SIVEDLK  640 (694)
T ss_dssp             TSSEEEEE-ETTSBCEEEETTTTEEEEC---CBCSSCEEEEEECSSSSEEEEEET-TEEEEEETTT----T--EEEEEEC
T ss_pred             CCCEEEEE-eCCCeEEEEECCCCceEEE---ecCCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCC----C--CChhhhc
Confidence            46655554 4467788999987754322   111112222333333334444433 3489999854    3  3333222


Q ss_pred             hhhhhh------hcC---CCCCCCce-EEEecCCEEEEEEcCCccEEEEEcc
Q 046684          288 IEMGMR------LSG---GKASWGGT-RCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       288 ~~~~~~------~~~---~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ......      ...   ........ .....++..++.++.++.|.+||+.
T Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          641 VDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            110000      000   00000011 2223467777778888889999875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.45  E-value=2.2  Score=36.82  Aligned_cols=190  Identities=8%  Similarity=0.041  Sum_probs=85.9

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      ...+.+||..+++...+.....  ....+.+...+        ++++++.++.+          ..+.+||..+++-...
T Consensus       107 dg~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~--------~~~~l~~~~~d----------g~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQIAQHDA--PVKTIHWIKAP--------NYSCVMTGSWD----------KTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS--CEEEEEEEECS--------SCEEEEEEETT----------SEEEEECSSCSSCSEE
T ss_pred             CCcEEEEEcCCCCceeeccccC--ceEEEEEEeCC--------CCCEEEEccCC----------CcEEEEECCCCcEEEE
Confidence            4689999999887655322111  11122221111        15666666554          4689999877642111


Q ss_pred             cCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc--EEecccCCCCCCCceeEEEE-CC---EEEEEE
Q 046684          186 GSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT--WRELSAPMADRLEFATLVSR-NQ---KLTLIG  259 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~~~~~~~~-~g---~l~~~g  259 (373)
                      -..+         ............+++.  .....+..||.....  +..+  ..+.......+... +.   .-.++.
T Consensus       167 ~~~~---------~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (368)
T 3mmy_A          167 LQLP---------ERCYCADVIYPMAVVA--TAERGLIVYQLENQPSEFRRI--ESPLKHQHRCVAIFKDKQNKPTGFAL  233 (368)
T ss_dssp             EECS---------SCEEEEEEETTEEEEE--EGGGCEEEEECSSSCEEEEEC--CCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred             EecC---------CCceEEEecCCeeEEE--eCCCcEEEEEeccccchhhhc--cccccCCCceEEEcccCCCCCCeEEE
Confidence            1111         0111123334444444  245678888887653  3333  11221111122211 11   111333


Q ss_pred             eecCCceEEEEeecCCCCC---CeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          260 GTCGGDACVWELSEGGDDD---IWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       260 g~~~~~~~i~~~~~~~~~~---~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +..+..+.+|+++.  ...   .......-..... .............+...++.+++.++..+.+.+||.+  ++
T Consensus       234 ~~~dg~i~i~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~--~~  305 (368)
T 3mmy_A          234 GSIEGRVAIHYINP--PNPAKDNFTFKCHRSNGTN-TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD--AR  305 (368)
T ss_dssp             EETTSEEEEEESSC--SCHHHHSEEEECSEEC-----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT--TT
T ss_pred             ecCCCcEEEEecCC--CCccccceeeeeeeccccc-ccccccccceEEEEEecCCCEEEEEccCCeEEEEECC--CC
Confidence            44555689999875  211   1111100000000 0000000000122223356677777777889999999  77

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=94.41  E-value=0.97  Score=39.69  Aligned_cols=175  Identities=8%  Similarity=-0.003  Sum_probs=91.9

Q ss_pred             eEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeec
Q 046684          107 LQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIG  186 (373)
Q Consensus       107 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~  186 (373)
                      ..+...++.......+.+-   ... ..++..+..  +     ++||...-.          ...++.++..+..-+.+.
T Consensus        53 ~~I~~i~~~g~~~~~~~~~---~~~-~~~l~~d~~--~-----~~ly~~D~~----------~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNN---LEN-AIALDFHHR--R-----ELVFWSDVT----------LDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SCEEEECTTSCCEEEEECS---CSC-EEEEEEETT--T-----TEEEEEETT----------TTEEEEEETTSCSCEEEE
T ss_pred             cceEEEeCCCCeeEEeecC---CCc-eEEEEEecc--c-----cEEEEEecc----------CCceEEEecCCCCceEEE
Confidence            4577888877666543221   111 222222211  1     778887422          246888888776544432


Q ss_pred             CCCccccccceeccCCceEE--ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeec
Q 046684          187 SMPVEFAVRLTVWTPNESVC--TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTC  262 (373)
Q Consensus       187 ~~p~~~~~~~~~~~~~~~~~--~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~  262 (373)
                      ...        .......++  .+|.|||.. .....|.++|+....-..+ ...... .-.++++-  +|.||+.....
T Consensus       112 ~~~--------~~~p~glavd~~~g~ly~~d-~~~~~I~~~~~dG~~~~~l-~~~~l~-~P~~iavdp~~g~ly~td~~~  180 (349)
T 3v64_C          112 STG--------LESPGGLAVDWVHDKLYWTD-SGTSRIEVANLDGAHRKVL-LWQSLE-KPRAIALHPMEGTIYWTDWGN  180 (349)
T ss_dssp             CSS--------CSCCCEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEE-ECTTCS-CEEEEEEETTTTEEEEEECSS
T ss_pred             eCC--------CCCccEEEEecCCCeEEEEc-CCCCeEEEEcCCCCceEEE-EeCCCC-CcceEEEecCcCeEEEeccCC
Confidence            211        001122333  368999994 4457899999886654443 221111 11234443  68899886433


Q ss_pred             CCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEcc
Q 046684          263 GGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       263 ~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ..  .|+..+.  +...-+.+.  ....          ..+..++.  .++.||+.+.....|..+|++
T Consensus       181 ~~--~I~r~~~--dG~~~~~~~--~~~~----------~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          181 TP--RIEASSM--DGSGRRIIA--DTHL----------FWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             SC--EEEEEET--TSCSCEESC--CSSC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CC--EEEEEeC--CCCCcEEEE--ECCC----------CCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            12  4555544  222111111  1110          11333443  488999999887889999988

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.38  E-value=3.5  Score=38.90  Aligned_cols=243  Identities=6%  Similarity=-0.028  Sum_probs=114.0

Q ss_pred             eeEEEEeCCCCCcc-ccCCCCCCCCceeEEee-CcEEEEeeCCCCceEEEEEcCc--ccceeccCCCCCCCCCCeEEEEE
Q 046684           63 LCCYVHNPVSDKWH-VLSLDFLPYPVRPVSSI-GSFLLLRPINSTILQLVLCNPF--TRQFRYLPLLNVSRTNPAVGIVM  138 (373)
Q Consensus        63 ~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~-~g~l~~~gg~~~~~~~~v~np~--t~~w~~lp~~~~~~~~~~~~~~~  138 (373)
                      ..+.++|..+.+-. .++....+.  ....+- +..+|+.+.   ...+.++|+.  |.+-  +...+.......+++-.
T Consensus       177 ~~V~viD~~t~~v~~~i~~g~~p~--~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~--v~~i~~G~~P~~ia~s~  249 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTGYAVH--ISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTT--VAEIKIGSEARSIETSK  249 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECSSCEE--EEEECTTSCEEEEEET---TSEEEEEETTSSSCCE--EEEEECCSEEEEEEECC
T ss_pred             CeEEEEECCCCeEEEEEeCCCCcc--ceEECCCCCEEEEEcC---CCeEEEEECCCCCCcE--eEEEecCCCCceeEEcc
Confidence            67888999887543 333322222  223333 556787664   4689999996  5432  22222221111222210


Q ss_pred             c--CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCcc---ccc---cceeccCCceEEECCE
Q 046684          139 E--GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVE---FAV---RLTVWTPNESVCTRGM  210 (373)
Q Consensus       139 ~--~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---~~~---~~~~~~~~~~~~~~g~  210 (373)
                      .  +. +      ..+|+....          ...+.++|..+.+  .+..++..   ...   .+..+...-.+..++.
T Consensus       250 ~~~pD-G------k~l~v~n~~----------~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~  310 (567)
T 1qks_A          250 MEGWE-D------KYAIAGAYW----------PPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  310 (567)
T ss_dssp             STTCT-T------TEEEEEEEE----------TTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             ccCCC-C------CEEEEEEcc----------CCeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence            0  01 1      456665432          2567888876643  33222110   000   0000100001111233


Q ss_pred             EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeech-
Q 046684          211 LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI-  288 (373)
Q Consensus       211 ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~-  288 (373)
                      .+++.-...+.|...|..+.+...+ ...+..+.-+.. ...+|+.+++.......+.++++++    .  +.+..++. 
T Consensus       311 ~~vv~~~~~g~v~~vd~~~~~~~~v-~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t----~--kl~~~i~vg  383 (567)
T 1qks_A          311 EFIVNVKETGKILLVDYTDLNNLKT-TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE----G--KLVAIEDTG  383 (567)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEE-EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT----T--EEEEEEECS
T ss_pred             EEEEEecCCCeEEEEecCCCcccee-eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC----C--cEEEEEecc
Confidence            3444334567888888876654333 222222222222 2336665555544444567776654    3  34444543 


Q ss_pred             hhhhhhcCCCCCCCceEEEec-CCEEEEEEc-CCccEEEEEccccCCc---ccEEEecccccC
Q 046684          289 EMGMRLSGGKASWGGTRCAAG-NGAICLYRE-VGLGMIIWREDEDKRK---WEWVWVGGCCLT  346 (373)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-~~~~~~~yd~~~~~~~---~~W~~~~~~~~~  346 (373)
                      ....+  ++    +...++.. ++.+|+... ..+.+.++|.+  +.+   -.|+.+...+..
T Consensus       384 g~~Ph--pg----~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~--~~~~~~~~~kvv~~i~~~  438 (567)
T 1qks_A          384 GQTPH--PG----RGANFVHPTFGPVWATSHMGDDSVALIGTD--PEGHPDNAWKILDSFPAL  438 (567)
T ss_dssp             SSSBC--CT----TCEEEEETTTEEEEEEEBSSSSEEEEEECC--TTTCTTTBTSEEEEEECS
T ss_pred             CcCCC--Cc----cceeeECCCCCcEEEeCCCCCCeEEEecCC--CCCCccccCEEEEEEecC
Confidence            22111  10    12333333 477888764 34679999988  530   028777665544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.38  E-value=3.5  Score=38.99  Aligned_cols=115  Identities=10%  Similarity=0.076  Sum_probs=67.1

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCC------CCCeEEEEEcCCCCCCCCCceEEEEEeccCCC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSR------TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDE  161 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~------~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~  161 (373)
                      -...+|.||+....   ..++.+|..|++  |+.-...+...      ...+.++.+           ++||+... +  
T Consensus        64 P~v~~g~vyv~~~~---~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~-----------~~v~~~t~-d--  126 (582)
T 1flg_A           64 AIVSDGVIYVTASY---SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYG-----------DKVFFGTL-D--  126 (582)
T ss_dssp             CEEETTEEEEEETT---TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEET-----------TEEEEEET-T--
T ss_pred             cEEECCEEEEEcCC---CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEEC-----------CEEEEEeC-C--
Confidence            34679999998763   349999999886  76533222110      012223332           77877432 1  


Q ss_pred             CCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECC------EEEEEEc----CCceEEEEEECCC
Q 046684          162 PRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRG------MLYWITS----ARAYSVIGFDIES  229 (373)
Q Consensus       162 ~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g------~ly~~gg----~~~~~i~~yd~~~  229 (373)
                              ..+..+|.++++  |+.-...+.     .......+.++.++      .+|+-..    .....+.+||+++
T Consensus       127 --------g~l~AlD~~TG~~~W~~~~~~~~-----~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          127 --------ASVVALNKNTGKVVWKKKFADHG-----AGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             --------TEEEEEESSSCCEEEEEECSCGG-----GTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             --------CEEEEEECCCCCEEeeecCCCCC-----cCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence                    368999998876  876433211     00111233455667      7776421    1257899999987


Q ss_pred             Cc--EEe
Q 046684          230 NT--WRE  234 (373)
Q Consensus       230 ~~--w~~  234 (373)
                      ++  |+.
T Consensus       194 G~~~W~~  200 (582)
T 1flg_A          194 GEEIWMR  200 (582)
T ss_dssp             CCEEEEE
T ss_pred             CCEEeec
Confidence            64  864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=94.37  E-value=2.1  Score=36.41  Aligned_cols=56  Identities=13%  Similarity=-0.017  Sum_probs=31.7

Q ss_pred             eeEEEEeCCCCCccc-cCCCCCC-CCceeEEeeCc-EEEEeeCCCCceEEEEEcCccccee
Q 046684           63 LCCYVHNPVSDKWHV-LSLDFLP-YPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFR  120 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~-~~~~~~~-~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~  120 (373)
                      ..+.++|..+.+... +...... .......+.+| .+|+.+..  ...+.++|+.+++..
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~   69 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETL   69 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC--CCeEEEEECCCCCeE
Confidence            467778987765432 2222210 12222334444 77776653  467999999988754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.33  E-value=2.6  Score=37.18  Aligned_cols=185  Identities=14%  Similarity=0.146  Sum_probs=90.5

Q ss_pred             ceEEEEEcCcccceeccC--CCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--
Q 046684          106 ILQLVLCNPFTRQFRYLP--LLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--  181 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp--~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--  181 (373)
                      ...+.+||..+++-...-  ..+.........+....  .+     ..+++.|+.+          ..+.+||.+...  
T Consensus       179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-----~~~l~sgs~D----------~~v~~wd~~~~~~~  241 (380)
T 3iz6_a          179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS--LN-----ANMFISGSCD----------TTVRLWDLRITSRA  241 (380)
T ss_dssp             TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS--SS-----CCEEEEEETT----------SCEEEEETTTTCCC
T ss_pred             CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec--CC-----CCEEEEEECC----------CeEEEEECCCCCcc
Confidence            567899999988754321  11111111122222111  11     5567777654          468889986322  


Q ss_pred             eeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCC----CCce-eE-EEECCE
Q 046684          182 WQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADR----LEFA-TL-VSRNQK  254 (373)
Q Consensus       182 W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~----~~~~-~~-~~~~g~  254 (373)
                      -+.+..-         ...-..+++. +|...+. +.....+..+|+.+++-...-...+..    .... .+ ...+|+
T Consensus       242 ~~~~~~h---------~~~v~~v~~~p~~~~l~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  311 (380)
T 3iz6_a          242 VRTYHGH---------EGDINSVKFFPDGQRFGT-GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR  311 (380)
T ss_dssp             CEEECCC---------SSCCCEEEECTTSSEEEE-ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS
T ss_pred             eEEECCc---------CCCeEEEEEecCCCeEEE-EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC
Confidence            1221111         0011122222 4555555 455677999999887543320111111    1111 22 223677


Q ss_pred             EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          255 LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       255 l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      +++.|+ .+..+.+|+...    .+  .+..+....     .+.........+..++..++.++.++.+.+||+.
T Consensus       312 ~l~~g~-~dg~i~vwd~~~----~~--~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          312 LLFAGY-SNGDCYVWDTLL----AE--MVLNLGTLQ-----NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             EEEEEC-TTSCEEEEETTT----CC--EEEEECCSC-----SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             EEEEEE-CCCCEEEEECCC----Cc--eEEEEeccc-----CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            666654 445579998754    22  222221100     0001111233344467777888888889999988

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=94.32  E-value=2.2  Score=36.40  Aligned_cols=197  Identities=13%  Similarity=0.167  Sum_probs=91.3

Q ss_pred             EEEEeCCCC-CccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCc-ccceeccCCCCCCCCCCeEEEEEcCCC
Q 046684           65 CYVHNPVSD-KWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPF-TRQFRYLPLLNVSRTNPAVGIVMEGPA  142 (373)
Q Consensus        65 ~~~~d~~~~-~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~-t~~w~~lp~~~~~~~~~~~~~~~~~~~  142 (373)
                      +..||+..+ .|... .......  .....+|.|++...   ...++.+|+. ...|+.-.+.+  . ..+.+ .. .  
T Consensus        80 l~~~d~~g~~~~~~~-~~~~~~~--~~~~~~~~l~v~t~---~~~l~~~d~~g~~~~~~~~~~~--~-~~~~~-~~-~--  146 (330)
T 3hxj_A           80 VYAINPDGTEKWRFD-TKKAIVS--DFTIFEDILYVTSM---DGHLYAINTDGTEKWRFKTKKA--I-YATPI-VS-E--  146 (330)
T ss_dssp             EEEECCCGGGGGGSC-C-----C--CEEEETTEEEEECT---TSEEEEECTTSCEEEEEECSSC--C-CSCCE-EC-T--
T ss_pred             EEEECCCCcEEEEEE-CCCCccc--CceEECCEEEEEec---CCEEEEEcCCCCEEEEEcCCCc--e-eeeeE-Ec-C--
Confidence            777887433 24322 1111111  22334898988664   4678999998 22354322211  1 11111 11 1  


Q ss_pred             CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCc
Q 046684          143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARA  219 (373)
Q Consensus       143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~  219 (373)
                       +     +++++.. .+          ..+..||.. ++  |+.....+          .....+. -+|.+|+. .   
T Consensus       147 -~-----g~l~vgt-~~----------~~l~~~d~~-g~~~~~~~~~~~----------~~~~~~~d~~g~l~v~-t---  194 (330)
T 3hxj_A          147 -D-----GTIYVGS-ND----------NYLYAINPD-GTEKWRFKTNDA----------ITSAASIGKDGTIYFG-S---  194 (330)
T ss_dssp             -T-----SCEEEEC-TT----------SEEEEECTT-SCEEEEEECSSC----------CCSCCEECTTCCEEEE-S---
T ss_pred             -C-----CEEEEEc-CC----------CEEEEECCC-CCEeEEEecCCC----------ceeeeEEcCCCEEEEE-e---
Confidence             1     6677632 21          368889887 43  65432211          1112233 36777765 2   


Q ss_pred             eEEEEEECCCC-cEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          220 YSVIGFDIESN-TWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       220 ~~i~~yd~~~~-~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ..+.+||...+ .|... ..  .... ..++.. +|.|++...  +..  ++.++. .....|..-  .+....      
T Consensus       195 ~~l~~~d~~g~~~~~~~-~~--~~~~-~~~~~~~~g~l~v~t~--~~g--l~~~~~-~g~~~~~~~--~~~~~~------  257 (330)
T 3hxj_A          195 DKVYAINPDGTEKWNFY-AG--YWTV-TRPAISEDGTIYVTSL--DGH--LYAINP-DGTEKWRFK--TGKRIE------  257 (330)
T ss_dssp             SSEEEECTTSCEEEEEC-CS--SCCC-SCCEECTTSCEEEEET--TTE--EEEECT-TSCEEEEEE--CSSCCC------
T ss_pred             CEEEEECCCCcEEEEEc-cC--Ccce-eceEECCCCeEEEEcC--CCe--EEEECC-CCCEeEEee--CCCCcc------
Confidence            78999994422 45543 21  1111 222333 557777542  222  333332 012234332  111110      


Q ss_pred             CCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          298 KASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                           ...+...++.||+.. ..+.+.+||++
T Consensus       258 -----~~~~~~~~g~l~v~t-~~ggl~~~d~~  283 (330)
T 3hxj_A          258 -----SSPVIGNTDTIYFGS-YDGHLYAINPD  283 (330)
T ss_dssp             -----SCCEECTTSCEEEEC-TTCEEEEECTT
T ss_pred             -----ccceEcCCCeEEEec-CCCCEEEECCC
Confidence                 122334477788743 34468899864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=94.31  E-value=2.8  Score=37.59  Aligned_cols=233  Identities=8%  Similarity=-0.015  Sum_probs=113.1

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccce-eccCCC-C-CCCCCCeEEEEEc
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQF-RYLPLL-N-VSRTNPAVGIVME  139 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w-~~lp~~-~-~~~~~~~~~~~~~  139 (373)
                      ..+..+|+.++.-..+.... ......+...++.+|+.... ....++++++.++.- ..+... + .......+++ . 
T Consensus       152 ~~I~~id~~~g~~~~~~~~~-~~~~ia~~~~g~~l~~~d~~-~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav-~-  227 (409)
T 3hrp_A          152 PRVRLISVDDNKVTTVHPGF-KGGKPAVTKDKQRVYSIGWE-GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL-D-  227 (409)
T ss_dssp             TEEEEEETTTTEEEEEEETC-CBCBCEECTTSSEEEEEBSS-TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE-C-
T ss_pred             CcEEEEECCCCEEEEeeccC-CCCceeEecCCCcEEEEecC-CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE-e-
Confidence            46667787766544442111 11113344445677776542 123899999987543 233111 1 1111122222 2 


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccC-C-ceEEE--CCEEEEEE
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTP-N-ESVCT--RGMLYWIT  215 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~-~~~~~--~g~ly~~g  215 (373)
                      +.       ++.||+... .          ..++.||..++.-+.+...+..    ...... . ..++.  +|.+|+..
T Consensus       228 p~-------~g~lyv~d~-~----------~~I~~~d~~~~~~~~~~~~~~~----g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          228 ET-------EEWLYFVDS-N----------KNFGRFNVKTQEVTLIKQLELS----GSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             TT-------SSEEEEECT-T----------CEEEEEETTTCCEEEEEECCCC----SCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             CC-------CCeEEEEEC-C----------CcEEEEECCCCCEEEEeccccc----CCCCCCccccEEEeCCCCEEEEEe
Confidence            10       178888321 1          3689999988775544222100    001111 1 34444  48999884


Q ss_pred             cCCceEEEEEECCCCcEEecccCC--CCC---------CCc-eeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEE
Q 046684          216 SARAYSVIGFDIESNTWRELSAPM--ADR---------LEF-ATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCL  282 (373)
Q Consensus       216 g~~~~~i~~yd~~~~~w~~~~~~~--p~~---------~~~-~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~  282 (373)
                       .....|..||+... ...+....  +..         ... .+++.. +|.||+........+..|++..    ..-+.
T Consensus       286 -~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~----G~v~~  359 (409)
T 3hrp_A          286 -QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD----GYVST  359 (409)
T ss_dssp             -TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT----TEEEE
T ss_pred             -CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC----CEEEE
Confidence             45678999998765 22221111  000         111 233332 6788888641233345555322    44444


Q ss_pred             EEeechhhhhhhcCC----CCCCCceEEEec-CCEEEEEEcCCccEEEEEcc
Q 046684          283 IEKVPIEMGMRLSGG----KASWGGTRCAAG-NGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       283 v~~~p~~~~~~~~~~----~~~~~~~~~~~~-~~~i~~~~~~~~~~~~yd~~  329 (373)
                      +...+....  ...+    .....+..++.. ++.||+.+.....|..++++
T Consensus       360 ~~g~~~~~g--~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          360 VAGQVDVAS--QIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEECTTCBS--CCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EeCCCCCCC--cCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            333211100  0000    001124555554 58999998888888888764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=94.29  E-value=2.8  Score=37.36  Aligned_cols=119  Identities=11%  Similarity=0.055  Sum_probs=68.5

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCC---------CC-CCc-eeEEE--ECCEEEEEEeecC------CceEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMA---------DR-LEF-ATLVS--RNQKLTLIGGTCG------GDACV  268 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p---------~~-~~~-~~~~~--~~g~l~~~gg~~~------~~~~i  268 (373)
                      +|+++|..  ....+..+|..++.-..+ .+..         .- -.+ ..++.  -+++||+......      ..-+|
T Consensus       237 dG~~~~vs--~~g~V~v~d~~~~~~~v~-~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V  313 (386)
T 3sjl_D          237 AGRLVWPT--YTGKIHQIDLSSGDAKFL-PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  313 (386)
T ss_dssp             TTEEEEEB--TTSEEEEEECTTSSCEEC-CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             CCcEEEEe--CCCEEEEEECCCCcceee-cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence            67777763  356789999876642222 1110         00 011 11222  2678999764321      12579


Q ss_pred             EEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcCCccEEEEEccccCCcccEEEecccccCC
Q 046684          269 WELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTG  347 (373)
Q Consensus       269 ~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~  347 (373)
                      |.++.    .+++.+..++.+....         ...+...+. .+|+.++.++.+.+||.+  ++    +.+...+..+
T Consensus       314 ~viD~----~t~kv~~~i~vg~~~~---------~lavs~D~~~~ly~tn~~~~~VsViD~~--t~----k~~~~i~~~~  374 (386)
T 3sjl_D          314 VVLDA----KTGERLAKFEMGHEID---------SINVSQDEKPLLYALSTGDKTLYIHDAE--SG----EELRSVNQLG  374 (386)
T ss_dssp             EEEET----TTCCEEEEEEEEEEEC---------EEEECSSSSCEEEEEETTTTEEEEEETT--TC----CEEEEECCCC
T ss_pred             EEEEC----CCCeEEEEEECCCCcc---------eEEECCCCCeEEEEEcCCCCeEEEEECC--CC----cEEEEecCCC
Confidence            98887    7778888877654210         122222333 577777778899999999  88    4455555444


Q ss_pred             C
Q 046684          348 G  348 (373)
Q Consensus       348 ~  348 (373)
                      +
T Consensus       375 ~  375 (386)
T 3sjl_D          375 H  375 (386)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=94.29  E-value=2.6  Score=37.02  Aligned_cols=23  Identities=9%  Similarity=0.027  Sum_probs=17.3

Q ss_pred             cCCEEEEEEcCCccEEEEEccccCC
Q 046684          309 GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .++.+++.++..+.+.+||++  +.
T Consensus       344 ~~~~~l~s~~~dg~i~iw~~~--~~  366 (408)
T 4a11_B          344 SNFQELYSGSRDCNILAWVPS--LY  366 (408)
T ss_dssp             TTTTEEEEEETTSCEEEEEEC--C-
T ss_pred             CCCCEEEEECCCCeEEEEeCC--CC
Confidence            456667777777889999999  65

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=94.27  E-value=3  Score=37.71  Aligned_cols=61  Identities=10%  Similarity=0.098  Sum_probs=33.2

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc-eeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF-ATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      +.+.+.+ .....|..||+.+.+.... . ....... ..++..++++++.++ .+..+.+|++..
T Consensus       210 ~~~l~s~-~~d~~i~vwd~~~~~~~~~-~-~~~h~~~v~~~~~sd~~~l~s~~-~d~~v~vwd~~~  271 (450)
T 2vdu_B          210 HQFIITS-DRDEHIKISHYPQCFIVDK-W-LFGHKHFVSSICCGKDYLLLSAG-GDDKIFAWDWKT  271 (450)
T ss_dssp             CEEEEEE-ETTSCEEEEEESCTTCEEE-E-CCCCSSCEEEEEECSTTEEEEEE-SSSEEEEEETTT
T ss_pred             CcEEEEE-cCCCcEEEEECCCCceeee-e-ecCCCCceEEEEECCCCEEEEEe-CCCeEEEEECCC
Confidence            5555554 4457789999887653322 0 1111111 122222677766665 344589999865

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.16  E-value=2.5  Score=36.46  Aligned_cols=186  Identities=8%  Similarity=-0.041  Sum_probs=98.8

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCCCCC-eEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSRTNP-AVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~~~~-~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ++.||.....  ...+..+++....-.. +.  ......+ .+++-...         ++||+.-..          ...
T Consensus        46 ~~~lyw~D~~--~~~I~r~~~~g~~~~~~~~--~~~l~~p~glavd~~~---------g~ly~~d~~----------~~~  102 (318)
T 3sov_A           46 HGLIYWSDVS--EEAIKRTEFNKTESVQNVV--VSGLLSPDGLACDWLG---------EKLYWTDSE----------TNR  102 (318)
T ss_dssp             GTEEEEEETT--TTEEEEEETTSSSCCCEEE--EECCSCCCEEEEETTT---------TEEEEEETT----------TTE
T ss_pred             CCEEEEEECC--CCcEEEEEccCCCceEEEE--cCCCCCccEEEEEcCC---------CeEEEEECC----------CCE
Confidence            6788887653  4678888887653211 10  0111111 23322111         778886422          246


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV  249 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~  249 (373)
                      +++++.....=+.+..-.        .......++-  +|.|||........|.++++....-+.+ ..... ..-.+++
T Consensus       103 I~~~~~dG~~~~~l~~~~--------~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~~~l-~~Pngla  172 (318)
T 3sov_A          103 IEVSNLDGSLRKVLFWQE--------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-INSEI-YWPNGLT  172 (318)
T ss_dssp             EEEEETTSCSCEEEECSS--------CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE-ECSSC-SCEEEEE
T ss_pred             EEEEECCCCcEEEEEeCC--------CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE-EECCC-CCccEEE
Confidence            888888654333332110        0011122332  5899998533467899999875443333 11111 1122445


Q ss_pred             EE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684          250 SR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       250 ~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd  327 (373)
                      .-  +++||+.... ...+..++++.    ..=+.+..   ..         ...+..++..++.+|........|..+|
T Consensus       173 vd~~~~~lY~aD~~-~~~I~~~d~dG----~~~~~~~~---~~---------~~~P~glav~~~~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          173 LDYEEQKLYWADAK-LNFIHKSNLDG----TNRQAVVK---GS---------LPHPFALTLFEDILYWTDWSTHSILACN  235 (318)
T ss_dssp             EETTTTEEEEEETT-TTEEEEEETTS----CSCEEEEC---SC---------CSCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EeccCCEEEEEECC-CCEEEEEcCCC----CceEEEec---CC---------CCCceEEEEeCCEEEEEecCCCeEEEEE
Confidence            43  7889998642 22344444432    22222221   00         1125677778999999988778899999


Q ss_pred             cc
Q 046684          328 ED  329 (373)
Q Consensus       328 ~~  329 (373)
                      +.
T Consensus       236 ~~  237 (318)
T 3sov_A          236 KY  237 (318)
T ss_dssp             TT
T ss_pred             CC
Confidence            96

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.14  E-value=1.6  Score=38.43  Aligned_cols=193  Identities=8%  Similarity=-0.015  Sum_probs=91.2

Q ss_pred             CeeEEEEeCCCCCccccCCCCCCCCceeEEee--CcEEEEeeCCCC---ceEEEEEcCcccceeccCCCCCCCCCCeEEE
Q 046684           62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSI--GSFLLLRPINST---ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGI  136 (373)
Q Consensus        62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~--~g~l~~~gg~~~---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~  136 (373)
                      ...++.+|..+.+...+.... ........+.  ++.|++......   ...++++|..+++++.+.. ........ ..
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~-~~  243 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDT-AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCT-HE  243 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEE-EE
T ss_pred             cceEEEEECCCCcEEeeccCC-cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCcccc-ce
Confidence            357778888776655543211 1111112233  343444432111   1579999998887776644 11111111 11


Q ss_pred             EEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEE
Q 046684          137 VMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWIT  215 (373)
Q Consensus       137 ~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~g  215 (373)
                      ...+.+       .+|+......      ......++++|..+++.+.+...+.      .   . ....- +|++++..
T Consensus       244 ~~spdg-------~~l~~~~~~~------~~~~~~l~~~d~~~g~~~~l~~~~~------~---~-~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          244 FWIPDG-------SAMAYVSYFK------GQTDRVIYKANPETLENEEVMVMPP------C---S-HLMSNFDGSLMVGD  300 (396)
T ss_dssp             EECTTS-------SCEEEEEEET------TTCCEEEEEECTTTCCEEEEEECCS------E---E-EEEECSSSSEEEEE
T ss_pred             EECCCC-------CEEEEEecCC------CCccceEEEEECCCCCeEEeeeCCC------C---C-CCccCCCCceEEEe
Confidence            111111       3344443221      1122458999998888776654431      0   1 11223 67766653


Q ss_pred             cC---------------CceEEEEEECCCCcEEecccCCCCCC----------CceeEEEECCEEEEEEeecCCceEEEE
Q 046684          216 SA---------------RAYSVIGFDIESNTWRELSAPMADRL----------EFATLVSRNQKLTLIGGTCGGDACVWE  270 (373)
Q Consensus       216 g~---------------~~~~i~~yd~~~~~w~~~~~~~p~~~----------~~~~~~~~~g~l~~~gg~~~~~~~i~~  270 (373)
                      +.               ....++.+|+.+++...+ ...+...          .......-+|+.+++.........+|.
T Consensus       301 ~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          301 GCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL-CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             ECCC----------CCCCCCEEEEEETTTTBCCEE-EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cCCcceeeccccccccCCCCcEEEEecccCceEEc-cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence            21               236799999988876555 2222100          111122235543333333333457888


Q ss_pred             eecCCCCCCeEEE
Q 046684          271 LSEGGDDDIWCLI  283 (373)
Q Consensus       271 ~~~~~~~~~W~~v  283 (373)
                      ++.  ++..++.+
T Consensus       380 ~~~--~~~~~~~~  390 (396)
T 3c5m_A          380 ADV--PESYKHLE  390 (396)
T ss_dssp             EEC--CTTCC---
T ss_pred             EEE--cccccccc
Confidence            775  45555544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.06  E-value=3.1  Score=37.19  Aligned_cols=103  Identities=7%  Similarity=-0.071  Sum_probs=58.4

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      ++.|||.. .....|.++|++...-..+ ...... .-.++++  .+|.||+........  |+..+.  +...=+.+..
T Consensus       170 ~~~lY~~d-~~~~~I~~~~~~g~~~~~l-~~~~~~-~P~~iavdp~~g~ly~td~~~~~~--I~~~~~--dG~~~~~~~~  242 (400)
T 3p5b_L          170 HSNIYWTD-SVLGTVSVADTKGVKRKTL-FRENGS-KPRAIVVDPVHGFMYWTDWGTPAK--IKKGGL--NGVDIYSLVT  242 (400)
T ss_dssp             TTEEEEEE-TTTTEEEEECTTTCSEEEE-EECSSC-CEEEEEEETTTTEEEEEECSSSCC--EEEEET--TSCSCEEEEC
T ss_pred             CCceEEEE-CCCCeEEEEeCCCCceEEE-EeCCCC-CcceEEEecccCeEEEEeCCCCCE--EEEEeC--CCCccEEEEE
Confidence            68999994 4467899999987765554 221111 1123444  368899876322233  444443  1121122211


Q ss_pred             echhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEcc
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~  329 (373)
                        ...          ..+..++.  .++.||+.+.....|..+|++
T Consensus       243 --~~l----------~~P~glavd~~~~~lY~aD~~~~~I~~~d~d  276 (400)
T 3p5b_L          243 --ENI----------QWPNGITLDLLSGRLYWVDSKLHSISSIDVN  276 (400)
T ss_dssp             --SSC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             --CCC----------CceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence              110          01333443  478999998887889999988

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.98  E-value=1.1  Score=39.90  Aligned_cols=200  Identities=12%  Similarity=0.056  Sum_probs=89.5

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|..++.++.  ...+.+||..+++....  +..... ...++...+.        ++.++.|+.+          ..+.
T Consensus       134 dg~~l~s~~~--d~~i~iwd~~~~~~~~~--~~~h~~-~v~~~~~~p~--------~~~l~s~s~d----------~~v~  190 (393)
T 1erj_A          134 DGKFLATGAE--DRLIRIWDIENRKIVMI--LQGHEQ-DIYSLDYFPS--------GDKLVSGSGD----------RTVR  190 (393)
T ss_dssp             TSSEEEEEET--TSCEEEEETTTTEEEEE--ECCCSS-CEEEEEECTT--------SSEEEEEETT----------SEEE
T ss_pred             CCCEEEEEcC--CCeEEEEECCCCcEEEE--EccCCC-CEEEEEEcCC--------CCEEEEecCC----------CcEE
Confidence            5544444443  46789999988764332  111111 1112222111        3444555443          4688


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCC-----CCCCCce
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPM-----ADRLEFA  246 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~-----p~~~~~~  246 (373)
                      +||.++++-........         ....+++.  +|.+.+.+ .....|..||..+++-... ...     ..+....
T Consensus       191 iwd~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~~~-s~d~~v~iwd~~~~~~~~~-~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          191 IWDLRTGQCSLTLSIED---------GVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETGFLVER-LDSENESGTGHKDSV  259 (393)
T ss_dssp             EEETTTTEEEEEEECSS---------CEEEEEECSTTCCEEEEE-ETTSCEEEEETTTCCEEEE-EC------CCCSSCE
T ss_pred             EEECCCCeeEEEEEcCC---------CcEEEEEECCCCCEEEEE-cCCCcEEEEECCCCcEEEe-ecccccCCCCCCCCE
Confidence            99988876432221110         01111222  45665554 4566788999987754322 111     1111111


Q ss_pred             e-EEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEE
Q 046684          247 T-LVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMI  324 (373)
Q Consensus       247 ~-~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  324 (373)
                      . +... +|++++.++ .+..+.+|++..  ......... ...........+........+...++..++.++..+.+.
T Consensus       260 ~~v~~~~~g~~l~s~s-~d~~v~~wd~~~--~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~  335 (393)
T 1erj_A          260 YSVVFTRDGQSVVSGS-LDRSVKLWNLQN--ANNKSDSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  335 (393)
T ss_dssp             EEEEECTTSSEEEEEE-TTSEEEEEEC------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             EEEEECCCCCEEEEEe-CCCEEEEEECCC--CCCcccccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            2 2222 566555554 445589999865  111100000 000000000000000001222233556667777778899


Q ss_pred             EEEccccCC
Q 046684          325 IWREDEDKR  333 (373)
Q Consensus       325 ~yd~~~~~~  333 (373)
                      +||.+  ++
T Consensus       336 iwd~~--~~  342 (393)
T 1erj_A          336 FWDKK--SG  342 (393)
T ss_dssp             EEETT--TC
T ss_pred             EEECC--CC
Confidence            99999  77

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=93.95  E-value=2  Score=41.54  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccc-cceeccCCceEEECCEEEEEEcCCceEEEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAV-RLTVWTPNESVCTRGMLYWITSARAYSVIGFD  226 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~-~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd  226 (373)
                      ++||+....           ..++.+|..+++  |+.-...+..... ..........++.++.+|+..  ....+.++|
T Consensus        78 g~vyv~~~~-----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~--~dg~l~alD  144 (677)
T 1kb0_A           78 GIMYVSASW-----------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA--WDGRLIALD  144 (677)
T ss_dssp             TEEEEECGG-----------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC--TTSEEEEEE
T ss_pred             CEEEEECCC-----------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEc--CCCEEEEEE
Confidence            888886532           358899988876  8865543211000 000112334577889999873  457899999


Q ss_pred             CCCCc--EEecccC-C-CC-CCCceeEEEECCEEEEEEeec----CCceEEEEeecCCCCCCeEEE
Q 046684          227 IESNT--WRELSAP-M-AD-RLEFATLVSRNQKLTLIGGTC----GGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       227 ~~~~~--w~~~~~~-~-p~-~~~~~~~~~~~g~l~~~gg~~----~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      .++++  |+.- .. . +. .......++.++.+|+.....    ...+..++.++  .+..|+.-
T Consensus       145 ~~tG~~~W~~~-~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t--G~~~W~~~  207 (677)
T 1kb0_A          145 AATGKEVWHQN-TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET--GERKWRWF  207 (677)
T ss_dssp             TTTCCEEEEEE-TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT--CCEEEEEE
T ss_pred             CCCCCEEeeec-CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCC--CcEEEEec
Confidence            98764  7754 22 1 11 112223345688887754321    12245555544  44457654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.94  E-value=1.4  Score=38.02  Aligned_cols=143  Identities=6%  Similarity=-0.095  Sum_probs=68.5

Q ss_pred             cEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEE
Q 046684           95 SFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEM  174 (373)
Q Consensus        95 g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~  174 (373)
                      |..++.++.  ...+.+||..+........+...... ..++...+   +     ++.++.|+.+          ..+.+
T Consensus        54 g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~-v~~~~~~~---~-----~~~l~s~~~d----------g~v~i  112 (368)
T 3mmy_A           54 GNFLIAGSW--ANDVRCWEVQDSGQTIPKAQQMHTGP-VLDVCWSD---D-----GSKVFTASCD----------KTAKM  112 (368)
T ss_dssp             SEEEEEEET--TSEEEEEEECTTSCEEEEEEEECSSC-EEEEEECT---T-----SSEEEEEETT----------SEEEE
T ss_pred             ceEEEEECC--CCcEEEEEcCCCCceeEEEeccccCC-EEEEEECc---C-----CCEEEEEcCC----------CcEEE
Confidence            355555543  46788998887332211111111111 11222211   1     4455556543          46899


Q ss_pred             EECCCCceeeecCCCccccccceeccCCceEE---ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684          175 YDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC---TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR  251 (373)
Q Consensus       175 yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~---~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~  251 (373)
                      ||..++.-.......         ..-..+.+   -++.+.+.+ .....|..||+.+++-... ...+  .....+...
T Consensus       113 wd~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~-~~~~--~~~~~~~~~  179 (368)
T 3mmy_A          113 WDLSSNQAIQIAQHD---------APVKTIHWIKAPNYSCVMTG-SWDKTLKFWDTRSSNPMMV-LQLP--ERCYCADVI  179 (368)
T ss_dssp             EETTTTEEEEEEECS---------SCEEEEEEEECSSCEEEEEE-ETTSEEEEECSSCSSCSEE-EECS--SCEEEEEEE
T ss_pred             EEcCCCCceeecccc---------CceEEEEEEeCCCCCEEEEc-cCCCcEEEEECCCCcEEEE-EecC--CCceEEEec
Confidence            999887754432221         01111222   245555553 4567799999887643222 1211  222233344


Q ss_pred             CCEEEEEEeecCCceEEEEeec
Q 046684          252 NQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       252 ~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      ...+++..  .+..+.+|+++.
T Consensus       180 ~~~~~~~~--~~~~i~~~~~~~  199 (368)
T 3mmy_A          180 YPMAVVAT--AERGLIVYQLEN  199 (368)
T ss_dssp             TTEEEEEE--GGGCEEEEECSS
T ss_pred             CCeeEEEe--CCCcEEEEEecc
Confidence            55444433  233478999876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.94  E-value=3.1  Score=36.66  Aligned_cols=110  Identities=7%  Similarity=0.013  Sum_probs=56.3

Q ss_pred             CCEEEEEEcCCceEEEEEECCCC--cEEecccCCCCCCCce-eEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESN--TWRELSAPMADRLEFA-TLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~~~~~-~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      ++.+.+.| .....|..+|+...  ....+    ..+.... .+... +|..++.++. +..+.+|++..    ..  .+
T Consensus       217 ~~~~l~sg-s~D~~v~~wd~~~~~~~~~~~----~~h~~~v~~v~~~p~~~~l~s~s~-D~~i~lwd~~~----~~--~~  284 (380)
T 3iz6_a          217 NANMFISG-SCDTTVRLWDLRITSRAVRTY----HGHEGDINSVKFFPDGQRFGTGSD-DGTCRLFDMRT----GH--QL  284 (380)
T ss_dssp             SCCEEEEE-ETTSCEEEEETTTTCCCCEEE----CCCSSCCCEEEECTTSSEEEEECS-SSCEEEEETTT----TE--EE
T ss_pred             CCCEEEEE-ECCCeEEEEECCCCCcceEEE----CCcCCCeEEEEEecCCCeEEEEcC-CCeEEEEECCC----Cc--EE
Confidence            45666664 45677889998632  22222    1111111 22222 5666666554 44579999865    32  22


Q ss_pred             EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          284 EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ..+.......  ..........++..++.+++.+...+.+.+||..  +.
T Consensus       285 ~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~--~~  330 (380)
T 3iz6_a          285 QVYNREPDRN--DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL--LA  330 (380)
T ss_dssp             EEECCCCSSS--CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT--TC
T ss_pred             EEeccccccc--ccccCceEEEEECCCCCEEEEEECCCCEEEEECC--CC
Confidence            2221110000  0000011234444567777778888899999998  76

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=93.88  E-value=1.6  Score=37.49  Aligned_cols=68  Identities=12%  Similarity=0.164  Sum_probs=39.9

Q ss_pred             ceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCE-EEEEEcCCceEEEEEE
Q 046684          149 NFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGM-LYWITSARAYSVIGFD  226 (373)
Q Consensus       149 ~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~gg~~~~~i~~yd  226 (373)
                      +.++|+.++.+          ..+.++|..+++....-..+.       .......++ -+|+ +|+.. .....|..||
T Consensus        10 ~~~~~v~~~~~----------~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~s~dg~~~~v~~-~~~~~i~~~d   71 (349)
T 1jmx_B           10 GHEYMIVTNYP----------NNLHVVDVASDTVYKSCVMPD-------KFGPGTAMMAPDNRTAYVLN-NHYGDIYGID   71 (349)
T ss_dssp             TCEEEEEEETT----------TEEEEEETTTTEEEEEEECSS-------CCSSCEEEECTTSSEEEEEE-TTTTEEEEEE
T ss_pred             CCEEEEEeCCC----------CeEEEEECCCCcEEEEEecCC-------CCCCceeEECCCCCEEEEEe-CCCCcEEEEe
Confidence            37778776543          578999998876543322221       001122222 2454 66663 4567899999


Q ss_pred             CCCCcEEe
Q 046684          227 IESNTWRE  234 (373)
Q Consensus       227 ~~~~~w~~  234 (373)
                      +++++...
T Consensus        72 ~~t~~~~~   79 (349)
T 1jmx_B           72 LDTCKNTF   79 (349)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCcEEE
Confidence            99876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=93.87  E-value=3  Score=36.33  Aligned_cols=177  Identities=12%  Similarity=0.042  Sum_probs=83.6

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      ...+.+||..+++....  +....  ..+..+......+     ++.++.|+.+          ..+.+||.++++....
T Consensus       175 D~~v~lwd~~~~~~~~~--~~~h~--~~v~~~~~~~~~~-----g~~l~sgs~D----------g~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQS--FHGHG--ADVLCLDLAPSET-----GNTFVSGGCD----------KKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             TSEEEEEETTTCCEEEE--EECCS--SCEEEEEECCCSS-----CCEEEEEETT----------SCEEEEETTTCCEEEE
T ss_pred             CCcEEEEeCCCCeEEEE--EcCCC--CCeEEEEEEeCCC-----CCEEEEEeCC----------CeEEEEECCCCcEEEE
Confidence            46788999988764321  11111  1121121111111     4566666654          4688999888764322


Q ss_pred             cCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeec
Q 046684          186 GSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTC  262 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~  262 (373)
                      -..       +. ..-..+++. +|...+.+ .....+..||+.+++-... ............+.  .+|.+.+.++ .
T Consensus       236 ~~~-------h~-~~v~~v~~~p~~~~l~s~-s~D~~v~lwd~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~~g~-~  304 (354)
T 2pbi_B          236 FET-------HE-SDVNSVRYYPSGDAFASG-SDDATCRLYDLRADREVAI-YSKESIIFGASSVDFSLSGRLLFAGY-N  304 (354)
T ss_dssp             ECC-------CS-SCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECTTSSEEEEEE-T
T ss_pred             ecC-------CC-CCeEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEEE-EcCCCcccceeEEEEeCCCCEEEEEE-C
Confidence            111       00 000111221 45555554 3466788999987653332 11111111222222  2566666654 4


Q ss_pred             CCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684          263 GGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       263 ~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd  327 (373)
                      +..+.+|++..    .  +.+..+..-.         .......+..++..++.++.++.+.+|+
T Consensus       305 d~~i~vwd~~~----~--~~~~~l~~h~---------~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          305 DYTINVWDVLK----G--SRVSILFGHE---------NRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TSCEEEEETTT----C--SEEEEECCCS---------SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCcEEEEECCC----C--ceEEEEECCC---------CcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            45589999854    2  2333332100         0001222333566666676666677664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=93.86  E-value=2.8  Score=35.93  Aligned_cols=201  Identities=8%  Similarity=-0.007  Sum_probs=101.6

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCC-CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC-------
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNV-SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG-------  165 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~-------  165 (373)
                      +|.||+....   ..+.++|+.+++.+.+..... ........+..++  .+     +++|+...........       
T Consensus        91 ~g~l~v~d~~---~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~--~~-----G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           91 NNQLYIVDCY---YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQ--RT-----GIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             TTEEEEEETT---TEEEEECTTCEECEEEESEETTEECSCEEEEEECT--TT-----CCEEEEESCSSCCTTCHHHHHHH
T ss_pred             CCcEEEEECC---CCEEEEeCCCCEEEEecccCCCCcccccceEEEec--CC-----CEEEEECCcccccccccceehcc
Confidence            6889988652   458899999877655532211 1111111222221  01     6788864211000000       


Q ss_pred             CcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EEEEEEcCCceEEEEEECCCC---cEEecccCCC
Q 046684          166 ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITSARAYSVIGFDIESN---TWRELSAPMA  240 (373)
Q Consensus       166 ~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~~~~~i~~yd~~~~---~w~~~~~~~p  240 (373)
                      ......+++||+.+++.+.+..-         .......++- +| .+|+.. .....|.+||+..+   +.+.+ ...+
T Consensus       161 ~~~~g~v~~~d~~~~~~~~~~~~---------~~~p~gia~~~dg~~lyv~d-~~~~~I~~~~~~~~~~~~~~~~-~~~~  229 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKETTLLLKE---------LHVPGGAEVSADSSFVLVAE-FLSHQIVKYWLEGPKKGTAEVL-VKIP  229 (322)
T ss_dssp             TCCCEEEEEEETTTTEEEEEEEE---------ESCCCEEEECTTSSEEEEEE-GGGTEEEEEESSSTTTTCEEEE-EECS
T ss_pred             cCCCceEEEEeCCCCEEEEeccC---------CccCcceEECCCCCEEEEEe-CCCCeEEEEECCCCcCCccceE-EeCC
Confidence            01225689999987765543210         0111222332 34 478773 34578999998853   34443 2222


Q ss_pred             CCCCceeEEE-ECCEEEEEEeec-------CCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCE
Q 046684          241 DRLEFATLVS-RNQKLTLIGGTC-------GGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGA  312 (373)
Q Consensus       241 ~~~~~~~~~~-~~g~l~~~gg~~-------~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  312 (373)
                      .   -.+++. -+|.||+.....       .....|+.++.  + .+-......+....        ......++..++.
T Consensus       230 g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~--~-G~~~~~~~~~~g~~--------~~~~~~~~~~~g~  295 (322)
T 2fp8_A          230 N---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE--F-GNILEVIPLPPPFA--------GEHFEQIQEHDGL  295 (322)
T ss_dssp             S---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT--T-SCEEEEEECCTTTT--------TSCCCEEEEETTE
T ss_pred             C---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC--C-CCEEEEEECCCCCc--------cccceEEEEeCCE
Confidence            1   122332 367898887541       11235666664  2 33222223332210        0013445557899


Q ss_pred             EEEEEcCCccEEEEEcc
Q 046684          313 ICLYREVGLGMIIWRED  329 (373)
Q Consensus       313 i~~~~~~~~~~~~yd~~  329 (373)
                      ||+.+...+.+.+|+++
T Consensus       296 L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          296 LYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEECSSCSEEEEEEC-
T ss_pred             EEEeecCCCceEEEecc
Confidence            99987777789999988

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=93.83  E-value=0.54  Score=41.54  Aligned_cols=146  Identities=8%  Similarity=0.086  Sum_probs=66.9

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEE----CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT----RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF  245 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~----~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~  245 (373)
                      ..+.+||..++.-......+..         .......    ++.+.+. +.....+..||+.+.+-...   +......
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d~~~~~~~~~---~~~~~~~  188 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFNFEET---------VYSHHMSPVSTKHCLVAV-GTRGPKVQLCDLKSGSCSHI---LQGHRQE  188 (408)
T ss_dssp             SEEEEEETTTTEEEEEEECSSC---------EEEEEECSSCSSCCEEEE-EESSSSEEEEESSSSCCCEE---ECCCCSC
T ss_pred             CeEEEeeCCCCccceeccCCCc---------eeeeEeecCCCCCcEEEE-EcCCCeEEEEeCCCcceeee---ecCCCCc
Confidence            4688999887664333222110         0011111    2334444 34566789999987643222   1111111


Q ss_pred             e-eEEEE-CCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhh---hhhhcCCCCCCCceEEEecCCEEEEEEcC
Q 046684          246 A-TLVSR-NQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEM---GMRLSGGKASWGGTRCAAGNGAICLYREV  319 (373)
Q Consensus       246 ~-~~~~~-~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  319 (373)
                      . .+... ++. +++.++ .+..+.+|++..  .......+.......   ...............+...++..++.++.
T Consensus       189 v~~~~~~~~~~~ll~~~~-~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  265 (408)
T 4a11_B          189 ILAVSWSPRYDYILATAS-ADSRVKLWDVRR--ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT  265 (408)
T ss_dssp             EEEEEECSSCTTEEEEEE-TTSCEEEEETTC--SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCCCCcEEEEEc-CCCcEEEEECCC--CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence            2 22222 344 555554 444579999875  222222221100000   00000000011012222335666667777


Q ss_pred             CccEEEEEccccCC
Q 046684          320 GLGMIIWREDEDKR  333 (373)
Q Consensus       320 ~~~~~~yd~~~~~~  333 (373)
                      .+.+.+||+.  ++
T Consensus       266 dg~i~vwd~~--~~  277 (408)
T 4a11_B          266 DNRMRLWNSS--NG  277 (408)
T ss_dssp             TSCEEEEETT--TC
T ss_pred             CCeEEEEECC--CC
Confidence            7789999999  76

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.81  E-value=0.52  Score=42.60  Aligned_cols=106  Identities=12%  Similarity=0.118  Sum_probs=53.1

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCc-EEecccCCCCCCCceeEEEE--CCE-EEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESNT-WRELSAPMADRLEFATLVSR--NQK-LTLIGGTCGGDACVWELSEGGDDDIWCLI  283 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~-w~~~~~~~p~~~~~~~~~~~--~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v  283 (373)
                      ++.+++.+ .....|..||+.+.. ...+ ............+..  ++. +++.++. +..+.+|++..  ....-..+
T Consensus       243 ~~~~l~s~-~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~~~l~tg~~-dg~v~vwd~~~--~~~~~~~~  317 (430)
T 2xyi_A          243 HESLFGSV-ADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPYSEFILATGSA-DKTVALWDLRN--LKLKLHSF  317 (430)
T ss_dssp             CTTEEEEE-ETTSEEEEEETTCSCSSSCS-EEEECCSSCEEEEEECSSCTTEEEEEET-TSEEEEEETTC--TTSCSEEE
T ss_pred             CCCEEEEE-eCCCeEEEEECCCCCCCcce-eEeecCCCCeEEEEeCCCCCCEEEEEeC-CCeEEEEeCCC--CCCCeEEe
Confidence            34555553 456789999998653 1111 111111122222222  343 6666654 44589999865  12211111


Q ss_pred             EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          284 EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .......           ........+..+++.++..+.+.+||+.
T Consensus       318 ~~h~~~v-----------~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          318 ESHKDEI-----------FQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             ECCSSCE-----------EEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             ecCCCCE-----------EEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            1111111           0122222345688888888889999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=93.80  E-value=3.8  Score=38.43  Aligned_cols=133  Identities=6%  Similarity=0.025  Sum_probs=68.5

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT  247 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~  247 (373)
                      ..+.+||..++.... ..+..       .......+.+  +|.+.+.+ .....+..||+.+.+-... .... +.....
T Consensus       467 ~~i~~~~~~~~~~~~-~~~~~-------~~~~v~~~~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~-~~~~-h~~~v~  535 (615)
T 1pgu_A          467 NTIQVFKLSDLEVSF-DLKTP-------LRAKPSYISISPSETYIAAG-DVMGKILLYDLQSREVKTS-RWAF-RTSKIN  535 (615)
T ss_dssp             SCEEEEETTEEEEEE-ECSSC-------CSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEC-CSCC-CSSCEE
T ss_pred             CeEEEEECCCccccc-cccCC-------ccCceEEEEECCCCCEEEEc-CCCCeEEEeeCCCCcceeE-eecC-CCCcee
Confidence            358889988765532 22210       0011111222  56666664 3467799999987755433 1110 222222


Q ss_pred             EEEE------------CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEE
Q 046684          248 LVSR------------NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICL  315 (373)
Q Consensus       248 ~~~~------------~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~  315 (373)
                      .+..            ++++++.++ .+..+.+|+++.    .. ..+..+..-.         ..........++. ++
T Consensus       536 ~~~~sp~~~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~----~~-~~~~~~~~h~---------~~v~~l~~s~~~~-l~  599 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEEDLVATGS-LDTNIFIYSVKR----PM-KIIKALNAHK---------DGVNNLLWETPST-LV  599 (615)
T ss_dssp             EEEECCCC------CCSCCEEEEEE-TTSCEEEEESSC----TT-CCEEETTSST---------TCEEEEEEEETTE-EE
T ss_pred             EEEEcCccccccccccCCCEEEEEc-CCCcEEEEECCC----Cc-eechhhhcCc---------cceEEEEEcCCCC-eE
Confidence            2222            566666654 444589999975    21 2222221110         0002233344667 77


Q ss_pred             EEcCCccEEEEEcc
Q 046684          316 YREVGLGMIIWRED  329 (373)
Q Consensus       316 ~~~~~~~~~~yd~~  329 (373)
                      .++..+.+.+||++
T Consensus       600 s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          600 SSGADACIKRWNVV  613 (615)
T ss_dssp             EEETTSCEEEEEEC
T ss_pred             EecCCceEEEEeee
Confidence            77777789999987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=93.78  E-value=2.8  Score=35.61  Aligned_cols=31  Identities=13%  Similarity=0.139  Sum_probs=21.6

Q ss_pred             cCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684          309 GNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      .++.+++.++.++.+.+||.+  +++ .|..+..
T Consensus       316 ~~~~~l~s~~~dg~v~iw~~~--~~~-~~~~~~~  346 (351)
T 3f3f_A          316 LTGTILSSAGDDGKVRLWKAT--YSN-EFKCMSV  346 (351)
T ss_dssp             SSSCCEEEEETTSCEEEEEEC--TTS-CEEEEEE
T ss_pred             CCCCEEEEecCCCcEEEEecC--cCc-chhheee
Confidence            356677777777889999998  631 5665544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=93.68  E-value=1.4  Score=38.10  Aligned_cols=21  Identities=5%  Similarity=0.093  Sum_probs=17.3

Q ss_pred             CEEEEEEcCCccEEEEEccccCC
Q 046684          311 GAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       311 ~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +.+++.++..+.+.+||.+  ++
T Consensus       299 ~~~l~~~~~dg~i~vwd~~--~~  319 (366)
T 3k26_A          299 QKMLALGNQVGKLYVWDLE--VE  319 (366)
T ss_dssp             SSEEEEECTTSCEEEEECC--SS
T ss_pred             CcEEEEEecCCcEEEEECC--CC
Confidence            6677778777889999999  76

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=93.56  E-value=3.5  Score=35.97  Aligned_cols=185  Identities=7%  Similarity=-0.028  Sum_probs=87.2

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      ++.+.+.++.  ...+.+||..+++....-..+.    ...++...+         ..+++..  +          ..+.
T Consensus        70 ~~~~~~~~~~--d~~v~iWd~~~~~~~~~~~~~~----~v~~v~~~~---------~~~~~~~--~----------~~i~  122 (355)
T 3vu4_A           70 TNYVAFVTGV--KEVVHIWDDVKKQDVSRIKVDA----PVKDLFLSR---------EFIVVSY--G----------DVIS  122 (355)
T ss_dssp             SSEEEEECSS--TTEEEEEETTTTEEEEEEECSS----CEEEEEECS---------SEEEEEE--T----------TEEE
T ss_pred             CCEEEEEECC--ccEEEEEECCCCcEEEEEECCC----ceEEEEEcC---------CEEEEEE--c----------CEEE
Confidence            4555555543  3589999999886533111111    111222211         3444432  1          2588


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc-EEe-------------cccCC
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT-WRE-------------LSAPM  239 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~-w~~-------------~~~~~  239 (373)
                      +||..++. +.+..+.       ..  ....++..+.+-+..|.....|..+|+.+++ +..             + ..+
T Consensus       123 i~d~~~~~-~~~~~~~-------~~--~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~-~~~  191 (355)
T 3vu4_A          123 VFKFGNPW-KRITDDI-------RF--GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKG-VLI  191 (355)
T ss_dssp             EEESSTTC-CBSSCCE-------EE--EEEEEEETTEEEEEESSCTTCEEEEECCC------------------CC-EEE
T ss_pred             EEECCCCc-eeeEEec-------cC--CceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCccc-EEE
Confidence            99987651 2222221       00  0011122233333325566788999988653 100             1 111


Q ss_pred             CCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEE
Q 046684          240 ADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR  317 (373)
Q Consensus       240 p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  317 (373)
                      ..+......+..  +|++++.++.++..+.+|++..      .+.+..+......       ..........++..++.+
T Consensus       192 ~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~------~~~~~~~~~g~h~-------~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          192 KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED------GVLVREFRRGLDR-------ADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT------CCEEEEEECTTCC-------SCEEEEEECTTSCEEEEE
T ss_pred             EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCCC-------CcEEEEEECCCCCEEEEE
Confidence            122222222222  6666666654443289999854      2344444311000       000122333467777778


Q ss_pred             cCCccEEEEEcc
Q 046684          318 EVGLGMIIWRED  329 (373)
Q Consensus       318 ~~~~~~~~yd~~  329 (373)
                      +..+.+.+||++
T Consensus       259 s~d~~v~iw~~~  270 (355)
T 3vu4_A          259 SDKWTLHVFEIF  270 (355)
T ss_dssp             ETTCEEEEEESS
T ss_pred             ECCCEEEEEEcc
Confidence            777889999987

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=93.34  E-value=0.72  Score=47.96  Aligned_cols=144  Identities=10%  Similarity=0.051  Sum_probs=70.2

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      +.+|..++.++.  ...+.+||..+++...+.....    ....+...+   +     .+++. ++.+          ..
T Consensus      1012 s~dg~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~----~v~~~~~~~---~-----~~l~~-~~~d----------g~ 1066 (1249)
T 3sfz_A         1012 TADGKTLISSSE--DSVIQVWNWQTGDYVFLQAHQE----TVKDFRLLQ---D-----SRLLS-WSFD----------GT 1066 (1249)
T ss_dssp             CSSSSCEEEECS--SSBEEEEETTTTEEECCBCCSS----CEEEEEECS---S-----SEEEE-EESS----------SE
T ss_pred             CCCCCEEEEEcC--CCEEEEEECCCCceEEEecCCC----cEEEEEEcC---C-----CcEEE-EECC----------Cc
Confidence            335544444443  4679999999987765432211    111121111   1     55544 4333          36


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee-EE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT-LV  249 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~-~~  249 (373)
                      +.+||..+++-...-..       +.. ....+++ -+|...+.+ .....+..||..+.+-  + ..+..+..... ++
T Consensus      1067 v~vwd~~~~~~~~~~~~-------~~~-~v~~~~~s~d~~~l~s~-s~d~~v~iwd~~~~~~--~-~~l~~h~~~v~~~~ 1134 (1249)
T 3sfz_A         1067 VKVWNVITGRIERDFTC-------HQG-TVLSCAISSDATKFSST-SADKTAKIWSFDLLSP--L-HELKGHNGCVRCSA 1134 (1249)
T ss_dssp             EEEEETTTTCCCEEEEC-------CSS-CCCCEEECSSSSSCEEE-CCSSCCCEECSSSSSC--S-BCCCCCSSCEEEEE
T ss_pred             EEEEECCCCceeEEEcc-------cCC-cEEEEEECCCCCEEEEE-cCCCcEEEEECCCcce--e-eeeccCCCcEEEEE
Confidence            88999887653211110       000 1111122 245555553 3456688888876542  2 12222222222 22


Q ss_pred             -EECCEEEEEEeecCCceEEEEeec
Q 046684          250 -SRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       250 -~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                       .-+|++.+.++.+ ..+.+|++..
T Consensus      1135 ~s~dg~~lat~~~d-g~i~vwd~~~ 1158 (1249)
T 3sfz_A         1135 FSLDGILLATGDDN-GEIRIWNVSD 1158 (1249)
T ss_dssp             ECSSSSEEEEEETT-SCCCEEESSS
T ss_pred             ECCCCCEEEEEeCC-CEEEEEECCC
Confidence             2266666666543 4478999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=93.29  E-value=3.3  Score=34.89  Aligned_cols=103  Identities=10%  Similarity=0.039  Sum_probs=55.5

Q ss_pred             EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684          211 LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEM  290 (373)
Q Consensus       211 ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~  290 (373)
                      +....+.....+..+|..+..-... ...............++.+++..|..+..+.+|++..      .+.+..+..-.
T Consensus       212 ~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~------~~~~~~l~gH~  284 (318)
T 4ggc_A          212 LATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT------MAKVAELKGHT  284 (318)
T ss_dssp             EEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT------CCEEEEECCCS
T ss_pred             EEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC------CcEEEEEcCCC
Confidence            3444455567788889887765444 2221111111111224556655565556689998854      34555543200


Q ss_pred             hhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          291 GMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                               ......+...++.+++.++.++.+.+||+.
T Consensus       285 ---------~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          285 ---------SRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             ---------SCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ---------CCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence                     000122233466777778887789999886

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=93.27  E-value=6.2  Score=38.07  Aligned_cols=94  Identities=14%  Similarity=0.101  Sum_probs=54.3

Q ss_pred             cceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC--CceEEEEEECCCCc---EEecccCCCCCC
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA--RAYSVIGFDIESNT---WRELSAPMADRL  243 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~--~~~~i~~yd~~~~~---w~~~~~~~p~~~  243 (373)
                      ...+++++..++.|+.+..-..         .....+..+|.+|+....  ....|+.+|+++.+   |+.+ .+.....
T Consensus       251 ~~~l~~~~~~~~~~~~l~~~~~---------~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~  320 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVKGVG---------AKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI-VPEDSSA  320 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEECSS---------CCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE-ECCCSSC
T ss_pred             ceEEEEEcCCCCceEEeecCCC---------ceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE-ecCCCCC
Confidence            4567788777777877754311         111223356666666421  35789999997754   8877 4432122


Q ss_pred             CceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          244 EFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       244 ~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      .-..+...++.|++....++. ..+|.++.
T Consensus       321 ~l~~~~~~~~~lv~~~~~dg~-~~l~~~~~  349 (695)
T 2bkl_A          321 SLLSVSIVGGHLSLEYLKDAT-SEVRVATL  349 (695)
T ss_dssp             EEEEEEEETTEEEEEEEETTE-EEEEEEET
T ss_pred             eEEEEEEECCEEEEEEEECCE-EEEEEEeC
Confidence            112334448888877654443 47777764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.06  E-value=3.5  Score=34.63  Aligned_cols=234  Identities=8%  Similarity=-0.065  Sum_probs=107.5

Q ss_pred             eeEEEEeCCCCC--ccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCCeEEEEE
Q 046684           63 LCCYVHNPVSDK--WHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIVM  138 (373)
Q Consensus        63 ~~~~~~d~~~~~--w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~  138 (373)
                      ..+.++|+.+.+  |..- ............+.+|.+++ ..   ...+..+|| +++  |+--.+  .......+... 
T Consensus        15 ~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pdG~ilv-s~---~~~V~~~d~-~G~~~W~~~~~--~~~~~~~~~~~-   85 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYP-LEKGWECNSVAATKAGEILF-SY---SKGAKMITR-DGRELWNIAAP--AGCEMQTARIL-   85 (276)
T ss_dssp             SEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTTSCEEE-EC---BSEEEEECT-TSCEEEEEECC--TTCEEEEEEEC-
T ss_pred             CEEEEEECCCCeEEEEeC-CCccCCCcCeEECCCCCEEE-eC---CCCEEEECC-CCCEEEEEcCC--CCccccccEEC-
Confidence            566678886653  4432 11111223334455777777 33   467999999 665  443221  11111111111 


Q ss_pred             cCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc-eeeecC--CCccccccceeccCCceEEECCEEEEEE
Q 046684          139 EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA-WQIIGS--MPVEFAVRLTVWTPNESVCTRGMLYWIT  215 (373)
Q Consensus       139 ~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~--~p~~~~~~~~~~~~~~~~~~~g~ly~~g  215 (373)
                          .+     +++++.....         ...+..+|+..+. |+....  .+..    + ..........+|.+++. 
T Consensus        86 ----~d-----G~~lv~~~~~---------~~~v~~vd~~Gk~l~~~~~~~~~~~~----~-~~~~~v~~~~~G~~lv~-  141 (276)
T 3no2_A           86 ----PD-----GNALVAWCGH---------PSTILEVNMKGEVLSKTEFETGIERP----H-AQFRQINKNKKGNYLVP-  141 (276)
T ss_dssp             ----TT-----SCEEEEEEST---------TEEEEEECTTSCEEEEEEECCSCSSG----G-GSCSCCEECTTSCEEEE-
T ss_pred             ----CC-----CCEEEEecCC---------CCEEEEEeCCCCEEEEEeccCCCCcc----c-ccccCceECCCCCEEEE-
Confidence                11     5555554221         1356777874432 443211  1110    1 01111123346776666 


Q ss_pred             cCCceEEEEEECCCC-cEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe-echhhhhh
Q 046684          216 SARAYSVIGFDIESN-TWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK-VPIEMGMR  293 (373)
Q Consensus       216 g~~~~~i~~yd~~~~-~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~-~p~~~~~~  293 (373)
                      ......+.+||++-+ .|+.- .+.   .........+|.+++++.. +..+..+++++  .+..|+.-.. ++...+. 
T Consensus       142 ~~~~~~v~~~d~~G~~~w~~~-~~~---~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~t--G~~~w~~~~~~~~~~~l~-  213 (276)
T 3no2_A          142 LFATSEVREIAPNGQLLNSVK-LSG---TPFSSAFLDNGDCLVACGD-AHCFVQLNLES--NRIVRRVNANDIEGVQLF-  213 (276)
T ss_dssp             ETTTTEEEEECTTSCEEEEEE-CSS---CCCEEEECTTSCEEEECBT-TSEEEEECTTT--CCEEEEEEGGGSBSCCCS-
T ss_pred             ecCCCEEEEECCCCCEEEEEE-CCC---CccceeEcCCCCEEEEeCC-CCeEEEEeCcC--CcEEEEecCCCCCCcccc-
Confidence            345678999999833 35543 221   1111222336777776543 22344444433  2334554311 1111110 


Q ss_pred             hcCCCCCCCceEEEecCCEEEEEE--cC--------CccEEEEEccccCCcccEEEecccccCCC
Q 046684          294 LSGGKASWGGTRCAAGNGAICLYR--EV--------GLGMIIWREDEDKRKWEWVWVGGCCLTGG  348 (373)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~i~~~~--~~--------~~~~~~yd~~~~~~~~~W~~~~~~~~~~~  348 (373)
                             .........++.+|+..  +.        ...++..|+   ++++.|+.- ..+..+.
T Consensus       214 -------~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~---~g~~~W~~~-~~~~~~~  267 (276)
T 3no2_A          214 -------FVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS---EGKVVWQLN-DKVKFGM  267 (276)
T ss_dssp             -------EEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT---TSBEEEEEC-CTTTSCC
T ss_pred             -------ccccceEcCCCCEEEEeccCccccccccCCceEEEECC---CCCEEEEec-Ccccccc
Confidence                   00233444588899887  32        223555555   455678743 3333333

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=93.02  E-value=5.1  Score=38.61  Aligned_cols=147  Identities=11%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceee-ecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI-IGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~  227 (373)
                      +++++.|+.+          ..+.+||..++.-.. +....         ..-..+++. +|...+.+ .....|..+|.
T Consensus       442 g~~l~sgs~D----------g~v~vwd~~~~~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~-s~D~~i~iwd~  501 (694)
T 3dm0_A          442 GQFALSGSWD----------GELRLWDLAAGVSTRRFVGHT---------KDVLSVAFSLDNRQIVSA-SRDRTIKLWNT  501 (694)
T ss_dssp             SSEEEEEETT----------SEEEEEETTTTEEEEEEECCS---------SCEEEEEECTTSSCEEEE-ETTSCEEEECT
T ss_pred             CCEEEEEeCC----------CcEEEEECCCCcceeEEeCCC---------CCEEEEEEeCCCCEEEEE-eCCCEEEEEEC
Confidence            5566666654          468899987764221 11110         000111221 34444443 34567888887


Q ss_pred             CCCcEEecccCCCCCCCceeEEEE--CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce
Q 046684          228 ESNTWRELSAPMADRLEFATLVSR--NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT  304 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~--~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~  304 (373)
                      ..+.-..+......+......+..  ++ .-+++.+..+..+.+|++..    .+  .+..+..-.         .....
T Consensus       502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~----~~--~~~~~~~h~---------~~v~~  566 (694)
T 3dm0_A          502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN----CK--LRSTLAGHT---------GYVST  566 (694)
T ss_dssp             TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT----CC--EEEEECCCS---------SCEEE
T ss_pred             CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC----Cc--EEEEEcCCC---------CCEEE
Confidence            655433331122222222222322  22 22344444555689999865    32  222222110         00012


Q ss_pred             EEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          305 RCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       305 ~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+...++.+++.++..+.+.+||+.  ++
T Consensus       567 v~~spdg~~l~sg~~Dg~i~iwd~~--~~  593 (694)
T 3dm0_A          567 VAVSPDGSLCASGGKDGVVLLWDLA--EG  593 (694)
T ss_dssp             EEECTTSSEEEEEETTSBCEEEETT--TT
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECC--CC
Confidence            3333467778888888889999999  77

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=92.82  E-value=4.3  Score=34.94  Aligned_cols=188  Identities=10%  Similarity=-0.047  Sum_probs=93.4

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      ++.+|+.+..  ...++++|+.+++.+.+.. +.  ...+++...+          +++++..  .          ..+.
T Consensus        60 ~~~l~~~d~~--~~~i~~~d~~~~~~~~~~~-~~--~v~~i~~~~d----------g~l~v~~--~----------~gl~  112 (326)
T 2ghs_A           60 SGTAWWFNIL--ERELHELHLASGRKTVHAL-PF--MGSALAKISD----------SKQLIAS--D----------DGLF  112 (326)
T ss_dssp             TTEEEEEEGG--GTEEEEEETTTTEEEEEEC-SS--CEEEEEEEET----------TEEEEEE--T----------TEEE
T ss_pred             CCEEEEEECC--CCEEEEEECCCCcEEEEEC-CC--cceEEEEeCC----------CeEEEEE--C----------CCEE
Confidence            4677776643  4579999999887654422 11  1112222221          6676643  1          2489


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcC-----CceEEEEEECCCCcEEecccCCCCCCCce
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSA-----RAYSVIGFDIESNTWRELSAPMADRLEFA  246 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~-----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~  246 (373)
                      +||..+++.+.+...+...   ...+  .....+  +|.+|+....     ....|+.+|  +++...+ .. .. ....
T Consensus       113 ~~d~~~g~~~~~~~~~~~~---~~~~--~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~~-~~-~~~~  182 (326)
T 2ghs_A          113 LRDTATGVLTLHAELESDL---PGNR--SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL-FA-DI-SIPN  182 (326)
T ss_dssp             EEETTTCCEEEEECSSTTC---TTEE--EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE-EE-EE-SSEE
T ss_pred             EEECCCCcEEEEeeCCCCC---CCCC--CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe-eC-CC-cccC
Confidence            9999988887664432110   0001  111222  5777765321     246799999  4666554 11 11 1112


Q ss_pred             eEEEE-CC-EEEEEEeecCCceEEEEeecCCCCC-Ce---EEEEeechhhhhhhcCCCCCCCceEE-EecCCEEEEEEcC
Q 046684          247 TLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDD-IW---CLIEKVPIEMGMRLSGGKASWGGTRC-AAGNGAICLYREV  319 (373)
Q Consensus       247 ~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~-~W---~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~  319 (373)
                      +++.. +| .||+... ....+.+|+++.  ++. ..   ..+..++....          .+..+ ...++.||+....
T Consensus       183 ~i~~s~dg~~lyv~~~-~~~~I~~~d~~~--~~Gl~~~~~~~~~~~~~~~~----------~p~gi~~d~~G~lwva~~~  249 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDT-KVNRLMRVPLDA--RTGLPTGKAEVFIDSTGIKG----------GMDGSVCDAEGHIWNARWG  249 (326)
T ss_dssp             EEEECTTSCEEEEEET-TTCEEEEEEBCT--TTCCBSSCCEEEEECTTSSS----------EEEEEEECTTSCEEEEEET
T ss_pred             CeEEcCCCCEEEEEEC-CCCEEEEEEccc--ccCCcccCceEEEECCCCCC----------CCCeeEECCCCCEEEEEeC
Confidence            33333 45 4666643 233355666541  112 21   11122211000          01223 3346788887655


Q ss_pred             CccEEEEEccccCC
Q 046684          320 GLGMIIWREDEDKR  333 (373)
Q Consensus       320 ~~~~~~yd~~~~~~  333 (373)
                      .+.+.+||++  .+
T Consensus       250 ~~~v~~~d~~--g~  261 (326)
T 2ghs_A          250 EGAVDRYDTD--GN  261 (326)
T ss_dssp             TTEEEEECTT--CC
T ss_pred             CCEEEEECCC--CC
Confidence            5679999997  55

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=92.80  E-value=4.1  Score=34.67  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=49.7

Q ss_pred             cCCceEEEEEECCCCcEEecccCCCCCCCce-eEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhh
Q 046684          216 SARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMR  293 (373)
Q Consensus       216 g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~  293 (373)
                      +.....+..||..+.+.... ...  ..... .++. -+|++++.++. +..+.+|++..      ...+..+.....  
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~-~~~--h~~~v~~~~~s~~~~~l~s~s~-Dg~i~iwd~~~------~~~~~~~~~~~~--  258 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTN-HIG--HTGYLNTVTVSPDGSLCASGGK-DGQAMLWDLNE------GKHLYTLDGGDI--  258 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEE-ECC--CSSCEEEEEECTTSSEEEEEET-TCEEEEEETTT------TEEEEEEECSSC--
T ss_pred             EcCCCEEEEEECCCCceeeE-ecC--CCCcEEEEEECCCCCEEEEEeC-CCeEEEEEecc------CceeeeecCCce--
Confidence            34456788899988765433 111  11112 2222 25666666553 44578998854      344444332210  


Q ss_pred             hcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          294 LSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                               ...+....+..++.++..+.+.+||.+  ++
T Consensus       259 ---------v~~~~~~~~~~~~~~~~d~~i~iwd~~--~~  287 (340)
T 4aow_A          259 ---------INALCFSPNRYWLCAATGPSIKIWDLE--GK  287 (340)
T ss_dssp             ---------EEEEEECSSSSEEEEEETTEEEEEETT--TT
T ss_pred             ---------EEeeecCCCCceeeccCCCEEEEEECC--CC
Confidence                     122223333334445556679999998  76

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=92.78  E-value=3.8  Score=34.31  Aligned_cols=101  Identities=7%  Similarity=0.009  Sum_probs=49.8

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      ++...+.+ .....+..||.... -..+  ..........+ ..-++. ++.+ ..+..+.+|++..    .  +.+..+
T Consensus       154 ~~~~l~~~-~~d~~i~i~d~~~~-~~~~--~~~~~~~i~~~~~~~~~~-~~~~-~~dg~i~i~d~~~----~--~~~~~~  221 (313)
T 3odt_A          154 SENKFLTA-SADKTIKLWQNDKV-IKTF--SGIHNDVVRHLAVVDDGH-FISC-SNDGLIKLVDMHT----G--DVLRTY  221 (313)
T ss_dssp             TTTEEEEE-ETTSCEEEEETTEE-EEEE--CSSCSSCEEEEEEEETTE-EEEE-ETTSEEEEEETTT----C--CEEEEE
T ss_pred             CCCEEEEE-ECCCCEEEEecCce-EEEE--eccCcccEEEEEEcCCCe-EEEc-cCCCeEEEEECCc----h--hhhhhh
Confidence            45555553 34567888883322 2222  11111111222 234666 4443 4455588998864    2  233333


Q ss_pred             chhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ......          ...+... ++. ++.++..+.+.+||++  ++
T Consensus       222 ~~~~~~----------i~~~~~~~~~~-l~~~~~dg~v~iwd~~--~~  256 (313)
T 3odt_A          222 EGHESF----------VYCIKLLPNGD-IVSCGEDRTVRIWSKE--NG  256 (313)
T ss_dssp             ECCSSC----------EEEEEECTTSC-EEEEETTSEEEEECTT--TC
T ss_pred             hcCCce----------EEEEEEecCCC-EEEEecCCEEEEEECC--CC
Confidence            211000          1223332 444 5567777789999999  77

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=92.63  E-value=2.1  Score=36.52  Aligned_cols=170  Identities=10%  Similarity=0.171  Sum_probs=82.5

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccc-eeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQ-FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~-w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      .+|.|++...    . ++.+|+..+. |.. +......  ....+..           +.||+.. .+          ..
T Consensus        69 ~~g~l~v~t~----~-l~~~d~~g~~~~~~-~~~~~~~--~~~~~~~-----------~~l~v~t-~~----------~~  118 (330)
T 3hxj_A           69 KDGTIYFGSD----K-VYAINPDGTEKWRF-DTKKAIV--SDFTIFE-----------DILYVTS-MD----------GH  118 (330)
T ss_dssp             TTTEECCSSC----E-EEEECCCGGGGGGS-CC-------CCEEEET-----------TEEEEEC-TT----------SE
T ss_pred             cCCcEEEecC----c-EEEECCCCcEEEEE-ECCCCcc--cCceEEC-----------CEEEEEe-cC----------CE
Confidence            4788887543    3 9999984333 332 2111111  1122222           7777643 21          35


Q ss_pred             EEEEECC-CCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCC-cEEecccCCCCCCCceeE
Q 046684          172 VEMYDSR-HDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESN-TWRELSAPMADRLEFATL  248 (373)
Q Consensus       172 ~~~yd~~-~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~-~w~~~~~~~p~~~~~~~~  248 (373)
                      +..||.. ...|+.....+          .....+.. +|.+|+.  .....+.+||++.+ .|..- .+  .... ..+
T Consensus       119 l~~~d~~g~~~~~~~~~~~----------~~~~~~~~~~g~l~vg--t~~~~l~~~d~~g~~~~~~~-~~--~~~~-~~~  182 (330)
T 3hxj_A          119 LYAINTDGTEKWRFKTKKA----------IYATPIVSEDGTIYVG--SNDNYLYAINPDGTEKWRFK-TN--DAIT-SAA  182 (330)
T ss_dssp             EEEECTTSCEEEEEECSSC----------CCSCCEECTTSCEEEE--CTTSEEEEECTTSCEEEEEE-CS--SCCC-SCC
T ss_pred             EEEEcCCCCEEEEEcCCCc----------eeeeeEEcCCCEEEEE--cCCCEEEEECCCCCEeEEEe-cC--CCce-eee
Confidence            7889887 22366543221          11222333 6777765  34578999999832 25433 22  2222 223


Q ss_pred             EE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684          249 VS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       249 ~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd  327 (373)
                      +. .+|.|++..    ..+..++ ..  ....|+...  +....           ...+...++.||+.. ..+.+..||
T Consensus       183 ~~d~~g~l~v~t----~~l~~~d-~~--g~~~~~~~~--~~~~~-----------~~~~~~~~g~l~v~t-~~~gl~~~~  241 (330)
T 3hxj_A          183 SIGKDGTIYFGS----DKVYAIN-PD--GTEKWNFYA--GYWTV-----------TRPAISEDGTIYVTS-LDGHLYAIN  241 (330)
T ss_dssp             EECTTCCEEEES----SSEEEEC-TT--SCEEEEECC--SSCCC-----------SCCEECTTSCEEEEE-TTTEEEEEC
T ss_pred             EEcCCCEEEEEe----CEEEEEC-CC--CcEEEEEcc--CCcce-----------eceEECCCCeEEEEc-CCCeEEEEC
Confidence            33 467777654    3344454 22  234454321  11100           122333455777754 334688888


Q ss_pred             cc
Q 046684          328 ED  329 (373)
Q Consensus       328 ~~  329 (373)
                      ..
T Consensus       242 ~~  243 (330)
T 3hxj_A          242 PD  243 (330)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=92.60  E-value=5.7  Score=35.87  Aligned_cols=204  Identities=7%  Similarity=-0.083  Sum_probs=100.6

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      .+|.||+....   ..+.++|+.+++.+.+..   ....+....+ +..+       ..||+.....      ......+
T Consensus       148 ~~g~Lyv~d~~---~~I~~id~~~~~v~~~~~---~~~~P~~ia~-d~~G-------~~lyvad~~~------~~~~~~v  207 (430)
T 3tc9_A          148 NHNHLYLVGEQ---HPTRLIDFEKEYVSTVYS---GLSKVRTICW-THEA-------DSMIITNDQN------NNDRPNN  207 (430)
T ss_dssp             EEEEEEEEEBT---EEEEEEETTTTEEEEEEC---CCSCEEEEEE-CTTS-------SEEEEEECCS------CTTSEEE
T ss_pred             CCCeEEEEeCC---CcEEEEECCCCEEEEEec---CCCCcceEEE-eCCC-------CEEEEEeCCC------CcccceE
Confidence            46889998763   789999999988766533   1111222222 2111       4588876322      1222345


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS  250 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~  250 (373)
                      ..++. .+.+.....++       .......+++.  +|.||+.. .....|..||+.+.....+ ...+....-.+++.
T Consensus       208 ~~~~~-~g~~~~~~~l~-------~~~~p~giavdp~~g~lyv~d-~~~~~V~~~~~~~~~~~~~-~~~~~~~~P~gia~  277 (430)
T 3tc9_A          208 YILTR-ESGFKVITELT-------KGQNCNGAETHPINGELYFNS-WNAGQVFRYDFTTQETTPL-FTIQDSGWEFHIQF  277 (430)
T ss_dssp             EEEEG-GGTSCSEEEEE-------ECSSCCCEEECTTTCCEEEEE-TTTTEEEEEETTTTEEEEE-EECSSSSCCEEEEE
T ss_pred             EEEeC-CCceeeeeeec-------cCCCceEEEEeCCCCEEEEEE-CCCCEEEEEECCCCcEEEE-EEcCCCCcceeEEE
Confidence            66665 33443211110       11122233332  58899884 4567899999987765333 22222111223443


Q ss_pred             E-CCE-EEEEEeecCCceEEEEeecCCCCCCe---EEEEeechh-hhhhh-cCCCCCCCce-EEEe---------cCCEE
Q 046684          251 R-NQK-LTLIGGTCGGDACVWELSEGGDDDIW---CLIEKVPIE-MGMRL-SGGKASWGGT-RCAA---------GNGAI  313 (373)
Q Consensus       251 ~-~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W---~~v~~~p~~-~~~~~-~~~~~~~~~~-~~~~---------~~~~i  313 (373)
                      . +|+ ||+... ....+.+++++.  .+...   ..+...+.. .+..- ........+. .++.         .++.|
T Consensus       278 ~pdG~~lyv~d~-~~~~I~~~~~d~--~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~l  354 (430)
T 3tc9_A          278 HPSGNYAYIVVV-NQHYILRSDYDW--KTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDF  354 (430)
T ss_dssp             CTTSSEEEEEET-TTTEEEEEEEET--TTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             cCCCCEEEEEEC-CCCEEEEEeCCc--ccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeE
Confidence            3 555 888753 222355555543  22222   222221100 00000 0000011133 4444         24689


Q ss_pred             EEEEcCCccEEEEEcc
Q 046684          314 CLYREVGLGMIIWRED  329 (373)
Q Consensus       314 ~~~~~~~~~~~~yd~~  329 (373)
                      |+.+.....|..+|++
T Consensus       355 yvaD~~n~~I~~i~~~  370 (430)
T 3tc9_A          355 YFCDRENHCIRILTPQ  370 (430)
T ss_dssp             EEEEGGGTEEEEECTT
T ss_pred             EEEECCCcEEEEECCC
Confidence            9998877889999964

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=92.57  E-value=0.56  Score=42.42  Aligned_cols=147  Identities=9%  Similarity=0.019  Sum_probs=74.9

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~  227 (373)
                      .++++.|+.+          ..+.+||..++.-.......      .....-..+++.  ++.+.+.+ .....|..+|+
T Consensus       132 ~~~lasGs~d----------g~i~lWd~~~~~~~~~~~~~------gH~~~V~~l~f~p~~~~~l~s~-s~D~~v~iwd~  194 (435)
T 4e54_B          132 PSTVAVGSKG----------GDIMLWNFGIKDKPTFIKGI------GAGGSITGLKFNPLNTNQFYAS-SMEGTTRLQDF  194 (435)
T ss_dssp             TTCEEEEETT----------SCEEEECSSCCSCCEEECCC------SSSCCCCEEEECSSCTTEEEEE-CSSSCEEEEET
T ss_pred             CCEEEEEeCC----------CEEEEEECCCCCceeEEEcc------CCCCCEEEEEEeCCCCCEEEEE-eCCCEEEEeec
Confidence            4467777654          35888988776543332221      011111222332  45544443 45567889999


Q ss_pred             CCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          228 ESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      +++....+............+.. -++.+++.++ .+..+.+|+++.    ..   +..+..      ..   . ....+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~dg~i~~wd~~~----~~---~~~~~~------h~---~-~v~~v  256 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGD-NVGNVILLNMDG----KE---LWNLRM------HK---K-KVTHV  256 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC-SSSBEEEEESSS----CB---CCCSBC------CS---S-CEEEE
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEe-CCCcEeeeccCc----ce---eEEEec------cc---c-eEEee
Confidence            98877665221111111222333 3566666654 344578998854    21   111110      00   0 01222


Q ss_pred             Ee--cCCEEEEEEcCCccEEEEEccccCC
Q 046684          307 AA--GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       307 ~~--~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ..  .++.+++.++..+.+.+||++  +.
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~--~~  283 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLR--QV  283 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETT--TC
T ss_pred             eecCCCceEEEEecCcceeeEEecc--cc
Confidence            22  345677777777788899987  54

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.47  E-value=3.6  Score=40.52  Aligned_cols=103  Identities=7%  Similarity=-0.082  Sum_probs=59.3

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      ++.|||.- .....|.++|+....-+.+ ...... .-.++++  .+|.||+.......  .|+..+.  +...=+.+..
T Consensus       482 ~~~LY~tD-~~~~~I~v~~ldG~~~~~l-~~~~l~-~P~gIaVDp~~g~LYwtD~g~~~--~I~~~~~--dG~~~~~lv~  554 (791)
T 3m0c_C          482 HSNIYWTD-SVLGTVSVADTKGVKRKTL-FRENGS-KPRAIVVDPVHGFMYWTDWGTPA--KIKKGGL--NGVDIYSLVT  554 (791)
T ss_dssp             TTEEEEEE-TTTTEEEEEETTSSSEEEE-EECTTC-CEEEEEEETTTTEEEEEECSSSC--EEEEEET--TSCCEEEEEC
T ss_pred             CCcEEEEe-cCCCeEEEEeCCCCeEEEE-EeCCCC-CcceEEEecCCCCEEEecCCCCC--eEEEEec--CCCceEEEEe
Confidence            57999994 4567899999987665555 221111 1124444  36899998632222  3555544  2222222211


Q ss_pred             echhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEcc
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~  329 (373)
                        ...          ..+..++.  .++.||+.+.....|..+|++
T Consensus       555 --~~l----------~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          555 --ENI----------QWPNGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             --SSC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             --CCC----------CCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence              110          11344444  478999998877789999988

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=92.43  E-value=4.3  Score=34.09  Aligned_cols=61  Identities=7%  Similarity=-0.037  Sum_probs=33.7

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee-EEEE-CCEEEEEEeecCCceEEEEeec
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT-LVSR-NQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~-~~~~-~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      +.+....|...+.|..||..+.+-...   +..+..... ++.. +|++++.++ .+..+.+|++.+
T Consensus       253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~---l~gH~~~V~~l~~spdg~~l~S~s-~D~~v~iWd~~~  315 (318)
T 4ggc_A          253 KELISGHGFAQNQLVIWKYPTMAKVAE---LKGHTSRVLSLTMSPDGATVASAA-ADETLRLWRCFE  315 (318)
T ss_dssp             TEEEEEECTTTCCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSCEEEEE-TTTEEEEECCSC
T ss_pred             cceEEEEEcCCCEEEEEECCCCcEEEE---EcCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Confidence            444444455677899999987653322   222222222 2222 566555554 445589999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=92.41  E-value=4.7  Score=34.50  Aligned_cols=239  Identities=10%  Similarity=-0.038  Sum_probs=109.0

Q ss_pred             CceEEEEEecC-CCeeEEEEeCCCCCccccCCCCCCCCceeEEee-C---cEEEEeeCCCCceEEEEEcCcccc--eecc
Q 046684           50 PAWFLALPTRN-RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSI-G---SFLLLRPINSTILQLVLCNPFTRQ--FRYL  122 (373)
Q Consensus        50 ~~~l~~~~~~~-~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~-~---g~l~~~gg~~~~~~~~v~np~t~~--w~~l  122 (373)
                      ...+++.+... ....+..||..+.+............-.+++.. +   |.+++.++.  ...+.+||..+++  ...+
T Consensus        30 ~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~  107 (357)
T 3i2n_A           30 SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF--GGNLHIWNLEAPEMPVYSV  107 (357)
T ss_dssp             SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET--TSCEEEECTTSCSSCSEEE
T ss_pred             CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC--CCeEEEEeCCCCCccEEEE
Confidence            33455544331 236777788877655433111111111222222 2   344443432  4678999998775  1112


Q ss_pred             CCCCCCCCCCeEEEEEc---CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccce
Q 046684          123 PLLNVSRTNPAVGIVME---GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLT  197 (373)
Q Consensus       123 p~~~~~~~~~~~~~~~~---~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~  197 (373)
                      ...   ... ..++...   ..+.+     ++.++.|+.+          ..+.+||..++.  ...+.....     ..
T Consensus       108 ~~~---~~~-v~~~~~~~~~~~s~~-----~~~l~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~-----~~  163 (357)
T 3i2n_A          108 KGH---KEI-INAIDGIGGLGIGEG-----APEIVTGSRD----------GTVKVWDPRQKDDPVANMEPVQG-----EN  163 (357)
T ss_dssp             CCC---SSC-EEEEEEESGGGCC-C-----CCEEEEEETT----------SCEEEECTTSCSSCSEEECCCTT-----SC
T ss_pred             Eec---ccc-eEEEeeccccccCCC-----ccEEEEEeCC----------CeEEEEeCCCCCCcceeccccCC-----CC
Confidence            211   111 1111111   11111     5556666554          358899988764  333322110     00


Q ss_pred             eccCCceE-----EECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE----CCEEEEEEeecCCceEE
Q 046684          198 VWTPNESV-----CTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR----NQKLTLIGGTCGGDACV  268 (373)
Q Consensus       198 ~~~~~~~~-----~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~----~g~l~~~gg~~~~~~~i  268 (373)
                      ......++     ..++.+.+.+ .....+..||+.+.+-... ....  ..-..+...    ++..+++++ .+..+.+
T Consensus       164 ~~~v~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~-~~~~--~~v~~~~~~~~~~~~~~l~~~~-~dg~i~i  238 (357)
T 3i2n_A          164 KRDCWTVAFGNAYNQEERVVCAG-YDNGDIKLFDLRNMALRWE-TNIK--NGVCSLEFDRKDISMNKLVATS-LEGKFHV  238 (357)
T ss_dssp             CCCEEEEEEECCCC-CCCEEEEE-ETTSEEEEEETTTTEEEEE-EECS--SCEEEEEESCSSSSCCEEEEEE-STTEEEE
T ss_pred             CCceEEEEEEeccCCCCCEEEEE-ccCCeEEEEECccCceeee-cCCC--CceEEEEcCCCCCCCCEEEEEC-CCCeEEE
Confidence            00111111     1356655554 4467899999988765333 1211  112223333    456666654 4445789


Q ss_pred             EEeecCCCCCCeEEE-EeechhhhhhhcCCCCCCCceEE-EecCCE-EEEEEcCCccEEEEEccccCC
Q 046684          269 WELSEGGDDDIWCLI-EKVPIEMGMRLSGGKASWGGTRC-AAGNGA-ICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       269 ~~~~~~~~~~~W~~v-~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      |++..  ........ ..+....     .     ....+ ...++. +++.++..+.+.+||.+  +.
T Consensus       239 ~d~~~--~~~~~~~~~~~~~~~~-----~-----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~  292 (357)
T 3i2n_A          239 FDMRT--QHPTKGFASVSEKAHK-----S-----TVWQVRHLPQNRELFLTAGGAGGLHLWKYE--YP  292 (357)
T ss_dssp             EEEEE--EETTTEEEEEEEECCS-----S-----CEEEEEEETTEEEEEEEEETTSEEEEEEEE--CC
T ss_pred             EeCcC--CCcccceeeeccCCCc-----C-----CEEEEEECCCCCcEEEEEeCCCcEEEeecC--CC
Confidence            99875  11111111 0110000     0     01222 223444 77778888889999998  54

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=92.40  E-value=8.3  Score=37.25  Aligned_cols=144  Identities=11%  Similarity=0.025  Sum_probs=75.0

Q ss_pred             ceEEEEECCCC--ceeeecCCCccccccceeccCCceEEECCEEEEEEcCC--ceEEEEEECCCC---cEEecccCCCCC
Q 046684          170 SMVEMYDSRHD--AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR--AYSVIGFDIESN---TWRELSAPMADR  242 (373)
Q Consensus       170 ~~~~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--~~~i~~yd~~~~---~w~~~~~~~p~~  242 (373)
                      ..++++|..+.  .|+.+..-..       ... ......++.+|+.....  ...|+..|+++.   .|+.+ .+....
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~-------~~~-~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~  329 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLD-------ADV-SLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-IPERQQ  329 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSS-------SCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-ECCCSS
T ss_pred             cEEEEEECCCCCCceEEEeCCCC-------ceE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE-ecCCCC
Confidence            58899998765  6777654311       000 11234568899886332  478999999863   48876 443332


Q ss_pred             CCceeEEEECCEEEEEEeecCCc-eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC--
Q 046684          243 LEFATLVSRNQKLTLIGGTCGGD-ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV--  319 (373)
Q Consensus       243 ~~~~~~~~~~g~l~~~gg~~~~~-~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  319 (373)
                      ..  .....++.|++....++.. +.+|+++     ..+...-.+|......         .......++.|++....  
T Consensus       330 ~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~-----g~~~~~l~~p~~~~~~---------~~~~~~d~~~l~~~~ss~~  393 (693)
T 3iuj_A          330 VL--TVHSGSGYLFAEYMVDATARVEQFDYE-----GKRVREVALPGLGSVS---------GFNGKHDDPALYFGFENYA  393 (693)
T ss_dssp             CE--EEEEETTEEEEEEEETTEEEEEEECTT-----SCEEEEECCSSSSEEE---------ECCCCTTCSCEEEEEECSS
T ss_pred             EE--EEEEECCEEEEEEEECCeeEEEEEECC-----CCeeEEeecCCCceEE---------eeecCCCCCEEEEEecCCC
Confidence            22  4444566676655443322 4455443     2233222233211000         01111134556554322  


Q ss_pred             -CccEEEEEccccCCcccEEEecc
Q 046684          320 -GLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       320 -~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                       ...++.||++  ++  +.+.+..
T Consensus       394 tP~~l~~~d~~--~g--~~~~l~~  413 (693)
T 3iuj_A          394 QPPTLYRFEPK--SG--AISLYRA  413 (693)
T ss_dssp             SCCEEEEECTT--TC--CEEEEEC
T ss_pred             CCCEEEEEECC--CC--eEEEEEe
Confidence             2569999998  88  6666543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=92.37  E-value=5.5  Score=35.16  Aligned_cols=67  Identities=7%  Similarity=0.043  Sum_probs=40.4

Q ss_pred             CCEEEEEEeecC------CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcCCccEE
Q 046684          252 NQKLTLIGGTCG------GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREVGLGMI  324 (373)
Q Consensus       252 ~g~l~~~gg~~~------~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~  324 (373)
                      +++||+......      ..-.||.++.    .+.+.+..++.+....         ...+...|. .+|+.+...+.+.
T Consensus       278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g~~p~---------~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          278 SDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLGHDVD---------AISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             CCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECCCCcC---------eEEECCCCCeEEEEEcCCCCeEE
Confidence            467888754211      1135777765    7778888886554210         233333355 4665554677899


Q ss_pred             EEEccccCC
Q 046684          325 IWREDEDKR  333 (373)
Q Consensus       325 ~yd~~~~~~  333 (373)
                      +||.+  +.
T Consensus       345 ViD~~--t~  351 (373)
T 2mad_H          345 IYDAG--AG  351 (373)
T ss_pred             EEECC--CC
Confidence            99999  66

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=92.29  E-value=2.7  Score=37.61  Aligned_cols=157  Identities=13%  Similarity=0.094  Sum_probs=75.6

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~  227 (373)
                      +++++.|+.+          ..+.+||.++++-...-..+      ... .....+.+  ++.+.+.| .....|..||+
T Consensus       182 ~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~------~h~-~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~  243 (437)
T 3gre_A          182 KSLLVALTNL----------SRVIIFDIRTLERLQIIENS------PRH-GAVSSICIDEECCVLILG-TTRGIIDIWDI  243 (437)
T ss_dssp             CEEEEEEETT----------SEEEEEETTTCCEEEEEECC------GGG-CCEEEEEECTTSCEEEEE-ETTSCEEEEET
T ss_pred             CCEEEEEeCC----------CeEEEEeCCCCeeeEEEccC------CCC-CceEEEEECCCCCEEEEE-cCCCeEEEEEc
Confidence            5566666554          47899999876532111110      000 11111222  45555554 44677999999


Q ss_pred             CCCcEEecccCCCCCCCceeEEEE----CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechh---hh-hhhcC---
Q 046684          228 ESNTWRELSAPMADRLEFATLVSR----NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIE---MG-MRLSG---  296 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~----~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~---~~-~~~~~---  296 (373)
                      .+++.... ...+....-..+...    .+.-+++.+..+..+.+|++..    .+  .+..+...   .. ..+.+   
T Consensus       244 ~~~~~~~~-~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~----~~--~~~~~~~~~~~~~~~~~~~~~~  316 (437)
T 3gre_A          244 RFNVLIRS-WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK----GH--CQYAFINSDEQPSMEHFLPIEK  316 (437)
T ss_dssp             TTTEEEEE-EBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT----TE--EEEEEESSSSCCCGGGGSCBCS
T ss_pred             CCccEEEE-EecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC----Cc--EEEEEEcCCCCCccceeccccc
Confidence            88665432 122221111112111    2344445444555589999864    32  22221100   00 00000   


Q ss_pred             --------C-CCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          297 --------G-KASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       297 --------~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                              + .+......+...++.+++.++.++.+.+||++  +.
T Consensus       317 ~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~--~~  360 (437)
T 3gre_A          317 GLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN--EL  360 (437)
T ss_dssp             SGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETT--CG
T ss_pred             ccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECC--Cc
Confidence                    0 00000122222377888888888899999998  76

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=92.26  E-value=1.7  Score=38.20  Aligned_cols=108  Identities=9%  Similarity=-0.046  Sum_probs=54.0

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      ...++++|..+++-+.+...+..   ....... +.       +++.+++....    ........++++|..++..+.+
T Consensus       167 ~~~l~~~d~~~g~~~~l~~~~~~---~~~~~~s-p~-------dg~~l~~~~~~----~~~~~~~~l~~~d~~~~~~~~l  231 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVILQENQW---LGHPIYR-PY-------DDSTVAFCHEG----PHDLVDARMWLINEDGTNMRKV  231 (388)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSC---EEEEEEE-TT-------EEEEEEEEECS----CTTTSSCSEEEEETTSCCCEES
T ss_pred             cceEEEEECCCCceEEeecCCcc---ccccEEC-CC-------CCCEEEEEEec----CCCCCcceEEEEeCCCCceEEe
Confidence            36799999999876665432211   1111121 10       14433332222    0122245789999887776665


Q ss_pred             cCCCccccccceeccCCceEE-ECCE-EEEEEcC-C--ceEEEEEECCCCcEEec
Q 046684          186 GSMPVEFAVRLTVWTPNESVC-TRGM-LYWITSA-R--AYSVIGFDIESNTWREL  235 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~gg~-~--~~~i~~yd~~~~~w~~~  235 (373)
                      ......     ...  ...++ -+|+ |++.... .  ...|+.+|+++++-+.+
T Consensus       232 ~~~~~~-----~~~--~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l  279 (388)
T 3pe7_A          232 KTHAEG-----ESC--THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL  279 (388)
T ss_dssp             CCCCTT-----EEE--EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred             eeCCCC-----ccc--ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence            443210     000  01112 2454 5554321 1  23599999999887665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=92.24  E-value=3.4  Score=36.91  Aligned_cols=104  Identities=17%  Similarity=0.144  Sum_probs=56.3

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +.+.+. +.....|..||+.+.+-... ...+........+..  ++.+++.++. +..+.+|++..    .  +.+..+
T Consensus       182 ~~~l~~-~~~d~~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~----~--~~~~~~  252 (437)
T 3gre_A          182 KSLLVA-LTNLSRVIIFDIRTLERLQI-IENSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIRF----N--VLIRSW  252 (437)
T ss_dssp             CEEEEE-EETTSEEEEEETTTCCEEEE-EECCGGGCCEEEEEECTTSCEEEEEET-TSCEEEEETTT----T--EEEEEE
T ss_pred             CCEEEE-EeCCCeEEEEeCCCCeeeEE-EccCCCCCceEEEEECCCCCEEEEEcC-CCeEEEEEcCC----c--cEEEEE
Confidence            555555 34567899999988764333 222212222222222  5666666554 44579999854    3  333333


Q ss_pred             chhhhhhhcCCCCCCCceEEE----e--cCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCA----A--GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ......          ...++    .  .++.+++.++..+.+.+||.+  ++
T Consensus       253 ~~~~~~----------~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~  293 (437)
T 3gre_A          253 SFGDHA----------PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV--KG  293 (437)
T ss_dssp             BCTTCE----------EEEEEEECTTTCTTEEEEEEESTTEEEEEEETT--TT
T ss_pred             ecCCCC----------ceEEEEeccccCCCccEEEEEcCCCcEEEEEcC--CC
Confidence            211100          11111    1  245577777777789999998  77

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=92.23  E-value=2.1  Score=38.51  Aligned_cols=107  Identities=15%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CC-EEEEEEeecCCceEEEEeecCCCCCC--------
Q 046684          211 LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQ-KLTLIGGTCGGDACVWELSEGGDDDI--------  279 (373)
Q Consensus       211 ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g-~l~~~gg~~~~~~~i~~~~~~~~~~~--------  279 (373)
                      +++.| ...+.|..||..+..- .+ ..+.........+..  ++ .+++.++.+ ..+.+|++...+....        
T Consensus       292 ~l~tg-~~dg~v~vwd~~~~~~-~~-~~~~~h~~~v~~i~~sp~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~  367 (430)
T 2xyi_A          292 ILATG-SADKTVALWDLRNLKL-KL-HSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGP  367 (430)
T ss_dssp             EEEEE-ETTSEEEEEETTCTTS-CS-EEEECCSSCEEEEEECSSCTTEEEEEETT-SCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred             EEEEE-eCCCeEEEEeCCCCCC-Ce-EEeecCCCCEEEEEECCCCCCEEEEEeCC-CcEEEEeCCCCccccCccccccCC
Confidence            66664 4567799999886321 11 111111122222222  34 466666543 4579999976211100        


Q ss_pred             eEEEEeechhhhhhhcCCCCCCCceEEEe-cCCE-EEEEEcCCccEEEEEccccCC
Q 046684          280 WCLIEKVPIEMGMRLSGGKASWGGTRCAA-GNGA-ICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       280 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~-i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      -..+.....         ... ....+.. .++. +++.++..+.+.+|++.  ++
T Consensus       368 ~~~~~~~~~---------h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~--~~  411 (430)
T 2xyi_A          368 PELLFIHGG---------HTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMA--EN  411 (430)
T ss_dssp             TTEEEECCC---------CSS-CEEEEEECSSSTTEEEEEETTSEEEEEEEC--HH
T ss_pred             cceEEEcCC---------CCC-CceEEEECCCCCCEEEEEECCCCEEEeEcc--cc
Confidence            011111110         000 0122222 2344 77777788889999998  66

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=92.20  E-value=4.9  Score=34.22  Aligned_cols=136  Identities=7%  Similarity=-0.082  Sum_probs=63.0

Q ss_pred             ceEEEEEC-CCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC---c----EEecccCCCC
Q 046684          170 SMVEMYDS-RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN---T----WRELSAPMAD  241 (373)
Q Consensus       170 ~~~~~yd~-~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~---~----w~~~~~~~p~  241 (373)
                      ..+.+||. .++.-..+...+       ....-...++..+.+.+.+ .....|..||+.+.   .    ...+ .....
T Consensus        79 g~i~~wd~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~  149 (342)
T 1yfq_A           79 GEILKVDLIGSPSFQALTNNE-------ANLGICRICKYGDDKLIAA-SWDGLIEVIDPRNYGDGVIAVKNLNS-NNTKV  149 (342)
T ss_dssp             SCEEEECSSSSSSEEECBSCC-------CCSCEEEEEEETTTEEEEE-ETTSEEEEECHHHHTTBCEEEEESCS-SSSSS
T ss_pred             CeEEEEEeccCCceEeccccC-------CCCceEEEEeCCCCEEEEE-cCCCeEEEEcccccccccccccCCee-eEEee
Confidence            36899998 877655444310       0001112223324444443 34577888888750   0    2222 12222


Q ss_pred             CCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCC-eEEEEeechhhhhhhcCCCCCCCceEEEec-CCEEEEEEcC
Q 046684          242 RLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDI-WCLIEKVPIEMGMRLSGGKASWGGTRCAAG-NGAICLYREV  319 (373)
Q Consensus       242 ~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~  319 (373)
                      ...-..+....+. +++ +..+..+.+|++..  .... ..... .+.....          ....... ++..++.++.
T Consensus       150 ~~~v~~~~~~~~~-l~~-~~~d~~i~i~d~~~--~~~~~~~~~~-~~~~~~i----------~~i~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          150 KNKIFTMDTNSSR-LIV-GMNNSQVQWFRLPL--CEDDNGTIEE-SGLKYQI----------RDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             CCCEEEEEECSSE-EEE-EESTTEEEEEESSC--CTTCCCEEEE-CSCSSCE----------EEEEECSGGGCEEEEEET
T ss_pred             CCceEEEEecCCc-EEE-EeCCCeEEEEECCc--cccccceeee-cCCCCce----------eEEEECCCCCCEEEEEec
Confidence            2222233333444 333 34445588999863  0111 22221 1111000          1222223 4566777777


Q ss_pred             CccEEEEEcc
Q 046684          320 GLGMIIWRED  329 (373)
Q Consensus       320 ~~~~~~yd~~  329 (373)
                      .+.+.+||.+
T Consensus       215 dg~i~i~~~~  224 (342)
T 1yfq_A          215 DGRVAVEFFD  224 (342)
T ss_dssp             TSEEEEEECC
T ss_pred             CCcEEEEEEc
Confidence            7788888887

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.17  E-value=5.6  Score=34.74  Aligned_cols=72  Identities=11%  Similarity=-0.097  Sum_probs=39.0

Q ss_pred             CceEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeC-cEEEEeeCCCCceEEEEEcCcccceeccCC
Q 046684           50 PAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIG-SFLLLRPINSTILQLVLCNPFTRQFRYLPL  124 (373)
Q Consensus        50 ~~~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~-g~l~~~gg~~~~~~~~v~np~t~~w~~lp~  124 (373)
                      ...++..........++.+|..+.....+............-+.+ ..|++...   ...++++|+.+++-+.+..
T Consensus        47 G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~---~~~l~~~d~~~~~~~~~~~  119 (396)
T 3c5m_A           47 GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN---ELNLMKVDLETLEEQVIYT  119 (396)
T ss_dssp             SCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET---TTEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc---CCcEEEEECCCCCcEEEEe
Confidence            344554444333356788898877666553322211111122334 44545444   2479999998887655543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=92.08  E-value=5.4  Score=34.39  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=15.3

Q ss_pred             cCCEEEEEEcCCccEEEEEcc
Q 046684          309 GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .++..++.++..+.+.+||+.
T Consensus       223 ~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          223 PNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             TTSSEEEEEETTCEEEEEESS
T ss_pred             CCCCEEEEEcCCCeEEEEECC
Confidence            356667777777788888884

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.05  E-value=1.2  Score=42.04  Aligned_cols=122  Identities=7%  Similarity=0.052  Sum_probs=68.9

Q ss_pred             ceEEECCEEEEEEcCCceEEEEEEC-CCC--cEEecccCCCCC--------CCceeEEEECCEEEEEEeecCCceEEEEe
Q 046684          203 ESVCTRGMLYWITSARAYSVIGFDI-ESN--TWRELSAPMADR--------LEFATLVSRNQKLTLIGGTCGGDACVWEL  271 (373)
Q Consensus       203 ~~~~~~g~ly~~gg~~~~~i~~yd~-~~~--~w~~~~~~~p~~--------~~~~~~~~~~g~l~~~gg~~~~~~~i~~~  271 (373)
                      ..++.+|.+|+... ....++++|. +++  .|+.- ...+..        ....+.+..+++||+...  +..+..++.
T Consensus        57 ~P~v~~g~vyv~~~-~~~~v~AlD~~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg~l~alD~  132 (571)
T 2ad6_A           57 APLVIGDMMYVHSA-FPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--NGHLLALDA  132 (571)
T ss_dssp             CCEEETTEEEEECS-TTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--TSEEEEEET
T ss_pred             ccEEECCEEEEEeC-CCCEEEEEeCCCCccEEEEEc-CCCCccccccccccccccccEEECCEEEEEeC--CCEEEEEEC
Confidence            34778999999842 1467999999 765  58764 222111        112345667888887642  222334444


Q ss_pred             ecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC-----CccEEEEEccccCCcccEEEec
Q 046684          272 SEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV-----GLGMIIWREDEDKRKWEWVWVG  341 (373)
Q Consensus       272 ~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~yd~~~~~~~~~W~~~~  341 (373)
                      ++  .+..|+.-..-+... ..      .  ...-+..++.||+....     .+.+..||.+  +++..|+.-.
T Consensus       133 ~t--G~~~W~~~~~~~~~~-~~------~--~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~~  194 (571)
T 2ad6_A          133 KT--GKINWEVEVCDPKVG-ST------L--TQAPFVAKDTVLMGCSGAELGVRGAVNAFDLK--TGELKWRAFA  194 (571)
T ss_dssp             TT--CCEEEEEECCCGGGT-CB------C--CSCCEEETTEEEEECBCGGGTCCCEEEEEETT--TCCEEEEEES
T ss_pred             CC--CCEEEEecCCCCCcc-ce------e--ccCCEEECCEEEEEecCCccCCCCEEEEEECC--CCcEEEEEcc
Confidence            33  344587532211100 00      0  11112347888876542     4679999999  9877888643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=92.00  E-value=1.5  Score=38.89  Aligned_cols=149  Identities=11%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      ++.++.|+.+          ..+.+||..+++-...-.-       +. ..-..+++. +|...+. +.....+..+|+.
T Consensus       135 g~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~-------h~-~~v~~~~~~p~~~~l~s-~s~d~~v~iwd~~  195 (393)
T 1erj_A          135 GKFLATGAED----------RLIRIWDIENRKIVMILQG-------HE-QDIYSLDYFPSGDKLVS-GSGDRTVRIWDLR  195 (393)
T ss_dssp             SSEEEEEETT----------SCEEEEETTTTEEEEEECC-------CS-SCEEEEEECTTSSEEEE-EETTSEEEEEETT
T ss_pred             CCEEEEEcCC----------CeEEEEECCCCcEEEEEcc-------CC-CCEEEEEEcCCCCEEEE-ecCCCcEEEEECC
Confidence            5566666554          4688999887653222111       00 000111222 3444444 3456788999998


Q ss_pred             CCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          229 SNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      +++.... ....  .....++..  ++++++.++. +..+.+|++..    ..  .+..+......  ..+.........
T Consensus       196 ~~~~~~~-~~~~--~~v~~~~~~~~~~~~l~~~s~-d~~v~iwd~~~----~~--~~~~~~~~~~~--~~~h~~~v~~v~  263 (393)
T 1erj_A          196 TGQCSLT-LSIE--DGVTTVAVSPGDGKYIAAGSL-DRAVRVWDSET----GF--LVERLDSENES--GTGHKDSVYSVV  263 (393)
T ss_dssp             TTEEEEE-EECS--SCEEEEEECSTTCCEEEEEET-TSCEEEEETTT----CC--EEEEEC--------CCCSSCEEEEE
T ss_pred             CCeeEEE-EEcC--CCcEEEEEECCCCCEEEEEcC-CCcEEEEECCC----Cc--EEEeecccccC--CCCCCCCEEEEE
Confidence            8765433 2211  111222222  5666666654 44579999864    32  22222211100  000000001222


Q ss_pred             EecCCEEEEEEcCCccEEEEEcc
Q 046684          307 AAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       307 ~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      +..++..++.++..+.+.+||++
T Consensus       264 ~~~~g~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          264 FTRDGQSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ECCCCCEEEEEeCCCEEEEEECC
Confidence            23356667777777889999987

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=91.89  E-value=5.5  Score=34.06  Aligned_cols=148  Identities=9%  Similarity=0.038  Sum_probs=76.5

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccC-CceEEE--CCEEEEEEcC---------
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTP-NESVCT--RGMLYWITSA---------  217 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~~~~--~g~ly~~gg~---------  217 (373)
                      ++||+....           ..+.+||+.++..+.+.....     ...... ..+++-  +|.+|+....         
T Consensus        92 g~l~v~d~~-----------~~i~~~d~~~g~~~~~~~~~~-----~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A           92 NQLYIVDCY-----------YHLSVVGSEGGHATQLATSVD-----GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             TEEEEEETT-----------TEEEEECTTCEECEEEESEET-----TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred             CcEEEEECC-----------CCEEEEeCCCCEEEEecccCC-----CCcccccceEEEecCCCEEEEECCcccccccccc
Confidence            778886422           237788887766555432211     011111 122332  5789887422         


Q ss_pred             -------CceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684          218 -------RAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI  288 (373)
Q Consensus       218 -------~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~  288 (373)
                             ....++.||+.+++...+...+.   ...+++.. +| .||+.... ...+.+|+++. ......+.+..++.
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~---~p~gia~~~dg~~lyv~d~~-~~~I~~~~~~~-~~~~~~~~~~~~~g  230 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKETTLLLKELH---VPGGAEVSADSSFVLVAEFL-SHQIVKYWLEG-PKKGTAEVLVKIPN  230 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTEEEEEEEEES---CCCEEEECTTSSEEEEEEGG-GTEEEEEESSS-TTTTCEEEEEECSS
T ss_pred             eehcccCCCceEEEEeCCCCEEEEeccCCc---cCcceEECCCCCEEEEEeCC-CCeEEEEECCC-CcCCccceEEeCCC
Confidence                   13679999998887665411111   11234433 44 47776542 23355555542 01134444443321


Q ss_pred             hhhhhhcCCCCCCCceEEEecCCEEEEEEcC----------CccEEEEEccccCC
Q 046684          289 EMGMRLSGGKASWGGTRCAAGNGAICLYREV----------GLGMIIWREDEDKR  333 (373)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~yd~~~~~~  333 (373)
                         .          .-.++..++.||+....          ...+..||++  .+
T Consensus       231 ---P----------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~  270 (322)
T 2fp8_A          231 ---P----------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GN  270 (322)
T ss_dssp             ---E----------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SC
T ss_pred             ---C----------CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--CC
Confidence               1          12334446679987644          4569999998  55

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=91.81  E-value=6.2  Score=34.52  Aligned_cols=182  Identities=8%  Similarity=-0.052  Sum_probs=83.3

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeE-EeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCC-eEEEEEcC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPV-SSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNP-AVGIVMEG  140 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~-~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~-~~~~~~~~  140 (373)
                      ..+..+|+.+.+......  ....-..+ -+.+|.+++.++   ...+.+++..+++.............. ++++..+ 
T Consensus       157 ~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd-  230 (365)
T 4h5i_A          157 AIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYIT---GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD-  230 (365)
T ss_dssp             CEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEEC---SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET-
T ss_pred             CEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEecc---ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC-
Confidence            456667876654322211  11111122 244666555555   356777887777654322211111111 2222221 


Q ss_pred             CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCc
Q 046684          141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARA  219 (373)
Q Consensus       141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~  219 (373)
                               ++.++.++.+      ......+..++...............    .....-.++++ -+|.+.+.| ...
T Consensus       231 ---------g~~l~~~s~d------~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~V~~~~~Spdg~~lasg-s~D  290 (365)
T 4h5i_A          231 ---------DTVLIAASLK------KGKGIVLTKISIKSGNTSVLRSKQVT----NRFKGITSMDVDMKGELAVLA-SND  290 (365)
T ss_dssp             ---------TEEEEEEEES------SSCCEEEEEEEEETTEEEEEEEEEEE----SSCSCEEEEEECTTSCEEEEE-ETT
T ss_pred             ---------CCEEEEEecC------CcceeEEeecccccceecceeeeeec----CCCCCeEeEEECCCCCceEEE-cCC
Confidence                     5566655433      12223466677666554432211000    00000011111 257766664 446


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeec
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      ..|..||.++.+-...  .+..+......+.  -+|++++.+ ..+..+.||++..
T Consensus       291 ~~V~iwd~~~~~~~~~--~~~gH~~~V~~v~fSpdg~~laS~-S~D~tvrvw~ip~  343 (365)
T 4h5i_A          291 NSIALVKLKDLSMSKI--FKQAHSFAITEVTISPDSTYVASV-SAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEETTTTEEEEE--ETTSSSSCEEEEEECTTSCEEEEE-ETTSEEEEEECCT
T ss_pred             CEEEEEECCCCcEEEE--ecCcccCCEEEEEECCCCCEEEEE-eCCCeEEEEEcCC
Confidence            7799999988654321  1122222222222  266655554 4555689999854

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=91.63  E-value=4.7  Score=34.19  Aligned_cols=136  Identities=8%  Similarity=0.037  Sum_probs=66.2

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECC-EEEEEEcCCceEEEEEECCCCcEEecccCCCCC----C
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRG-MLYWITSARAYSVIGFDIESNTWRELSAPMADR----L  243 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g-~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~----~  243 (373)
                      ..+.++|..+++-...-..+.      .......+++ -+| .+|+.. .....|..+|+.+.+-... .+.+..    .
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~v~~-~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~   82 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIAD------AGPTPMVPMVAPGGRIAYATV-NKSESLVKIDLVTGETLGR-IDLSTPEERVK   82 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTT------CTTCCCCEEECTTSSEEEEEE-TTTTEEEEEETTTCCEEEE-EECCBTTEEEE
T ss_pred             CeEEEEECCCCcEEEEEEcCC------CCCCccceEEcCCCCEEEEEe-CCCCeEEEEECCCCCeEee-EEcCCcccccc
Confidence            468889988776433222211      0000112222 245 566663 4467899999988765432 222210    0


Q ss_pred             CceeEEEE-CC-EEEEEEee----------cCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC
Q 046684          244 EFATLVSR-NQ-KLTLIGGT----------CGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG  311 (373)
Q Consensus       244 ~~~~~~~~-~g-~l~~~gg~----------~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~  311 (373)
                      .-..++.. +| .||+....          ....+.+|+++.    .+  .+..++.....         ....+...+.
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~----~~--~~~~~~~~~~~---------~~~~~s~dg~  147 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET----LS--RRKAFEAPRQI---------TMLAWARDGS  147 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT----TE--EEEEEECCSSC---------CCEEECTTSS
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCC----Cc--EEEEEeCCCCc---------ceeEECCCCC
Confidence            11123332 45 56665421          123466777643    33  33333221110         1233333455


Q ss_pred             EEEEEEcCCccEEEEEccccCC
Q 046684          312 AICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       312 ~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .||+.   .+.+.+||++  ++
T Consensus       148 ~l~~~---~~~i~~~d~~--~~  164 (337)
T 1pby_B          148 KLYGL---GRDLHVMDPE--AG  164 (337)
T ss_dssp             CEEEE---SSSEEEEETT--TT
T ss_pred             EEEEe---CCeEEEEECC--CC
Confidence            57776   3469999999  77

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=91.32  E-value=11  Score=36.58  Aligned_cols=145  Identities=7%  Similarity=-0.035  Sum_probs=77.6

Q ss_pred             cceEEEEECCCC--c-eeeecCCCccccccceeccCCceEEECCEEEEEEcC--CceEEEEEECCC--CcEEecccCCCC
Q 046684          169 ESMVEMYDSRHD--A-WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA--RAYSVIGFDIES--NTWRELSAPMAD  241 (373)
Q Consensus       169 ~~~~~~yd~~~~--~-W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~--~~~~i~~yd~~~--~~w~~~~~~~p~  241 (373)
                      ...++++|..++  . |+.+.....       ... ......++.+|+....  ....|+.+|+++  ++|+.+ .+...
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~-------~~~-~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~  363 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLK-------AQW-DFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV-VPESK  363 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSS-------SCE-EEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE-ECCCS
T ss_pred             cceEEEEECCCCCCcccEEecCCCC-------ceE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE-ecCCC
Confidence            568899998877  6 887754311       011 1112345678877522  256799999988  579887 44322


Q ss_pred             CCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE--ecCCEEEEEEc-
Q 046684          242 RLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA--AGNGAICLYRE-  318 (373)
Q Consensus       242 ~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~-  318 (373)
                      .. -..+...++.|++....++. ..+|.++.  +.+   .+..++.+....         ...+.  ..++.|++... 
T Consensus       364 ~~-l~~~~~~~~~lv~~~~~dg~-~~l~~~~~--~g~---~~~~l~~~~~~~---------v~~~~~s~d~~~l~~~~ss  427 (741)
T 1yr2_A          364 DN-LESVGIAGNRLFASYIHDAK-SQVLAFDL--DGK---PAGAVSLPGIGS---------ASGLSGRPGDRHAYLSFSS  427 (741)
T ss_dssp             SE-EEEEEEEBTEEEEEEEETTE-EEEEEEET--TSC---EEEECBCSSSCE---------EEEEECCBTCSCEEEEEEE
T ss_pred             Ce-EEEEEEECCEEEEEEEECCE-EEEEEEeC--CCC---ceeeccCCCCeE---------EEEeecCCCCCEEEEEEcC
Confidence            21 12334447888777655443 46777763  222   223333210000         01111  23445655432 


Q ss_pred             --CCccEEEEEccccCCcccEEEecc
Q 046684          319 --VGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       319 --~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                        ....++.||++  ++  +.+.+..
T Consensus       428 ~~~P~~i~~~d~~--tg--~~~~l~~  449 (741)
T 1yr2_A          428 FTQPATVLALDPA--TA--KTTPWEP  449 (741)
T ss_dssp             TTEEEEEEEEETT--TT--EEEECSC
T ss_pred             CCCCCEEEEEECC--CC--cEEEEec
Confidence              12468999998  88  6665543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=91.16  E-value=1.5  Score=42.37  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             ceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCCC--------CCceeEEEECCEEEEEEeecCCceEEEEee
Q 046684          203 ESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMADR--------LEFATLVSRNQKLTLIGGTCGGDACVWELS  272 (373)
Q Consensus       203 ~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~--------~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~  272 (373)
                      +.++.+|.+|+..  ....+.++|.+++  .|+.- ...+..        ....+.+..+++||+...  +..+..++.+
T Consensus        61 ~P~v~~g~vyv~~--~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg~l~alD~~  135 (668)
T 1kv9_A           61 TPLFHDGVIYTSM--SWSRVIAVDAASGKELWRYD-PEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--DGRLIALDAK  135 (668)
T ss_dssp             CCEEETTEEEEEE--GGGEEEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--TSEEEEEETT
T ss_pred             CCEEECCEEEEEC--CCCeEEEEECCCChhceEEC-CCCCccccccccccCCccceEEECCEEEEEcC--CCEEEEEECC
Confidence            3477899999985  3568999999876  48764 222211        012334566888877532  2234444444


Q ss_pred             cCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC-----CccEEEEEccccCCcccEEEe
Q 046684          273 EGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV-----GLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       273 ~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      +  .+..|+.-..-+.....       .  ...-+..++.||+....     .+.+..||.+  +++..|+.-
T Consensus       136 t--G~~~W~~~~~~~~~~~~-------~--~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~  195 (668)
T 1kv9_A          136 T--GKAIWSQQTTDPAKPYS-------I--TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDAD--TGKLAWRFY  195 (668)
T ss_dssp             T--CCEEEEEECSCTTSSCB-------C--CSCCEEETTEEEECCBCTTTCCBCEEEEEETT--TCCEEEEEE
T ss_pred             C--CCEeeeeccCCCCCcce-------e--cCCCEEECCEEEEeCCCCCcCCCCEEEEEECC--CCcEEEEec
Confidence            4  44568764321110000       0  11223357888875432     3579999999  997788864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=90.83  E-value=12  Score=36.03  Aligned_cols=213  Identities=10%  Similarity=-0.018  Sum_probs=100.0

Q ss_pred             eeCcEEEEeeCCCC--ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           92 SIGSFLLLRPINST--ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        92 ~~~g~l~~~gg~~~--~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      .-|+.+|.......  ...+++.+...++++.+-.....-..+...+.....+     +|++.+++....     .....
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~S-----PDG~~la~~~~~-----~G~~~  146 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVS-----WDGKKVAFAQKP-----NAADE  146 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEEC-----TTSSEEEEEEEE-----TTCSC
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEEC-----CCCCEEEEEECC-----CCCce
Confidence            44666666543221  3467777777777766533221101111111111111     125544443222     22224


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcC------------CceEEEEEECCCCcE--Ee
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSA------------RAYSVIGFDIESNTW--RE  234 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~------------~~~~i~~yd~~~~~w--~~  234 (373)
                      ..++++|..+++......++        .......+.. +|+..+.+..            ....|+.+++.+++-  ..
T Consensus       147 ~~i~v~dl~tg~~~~~~~~~--------~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l  218 (695)
T 2bkl_A          147 AVLHVIDVDSGEWSKVDVIE--------GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV  218 (695)
T ss_dssp             CEEEEEETTTCCBCSSCCBS--------CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE
T ss_pred             EEEEEEECCCCCCcCCcccC--------cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE
Confidence            68999999998864111111        1111223333 5554433322            234588899887653  22


Q ss_pred             cccCCCCC-CCceeE-EEECCEEEEEEeecC-CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC
Q 046684          235 LSAPMADR-LEFATL-VSRNQKLTLIGGTCG-GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG  311 (373)
Q Consensus       235 ~~~~~p~~-~~~~~~-~~~~g~l~~~gg~~~-~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~  311 (373)
                      + ...+.. ...... ..-+|+..++..... ...++|.++.  .+..|..+..-....            ...+...|+
T Consensus       219 v-~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~--~~~~~~~l~~~~~~~------------~~~~~~~g~  283 (695)
T 2bkl_A          219 V-HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP--GEKDFRLLVKGVGAK------------YEVHAWKDR  283 (695)
T ss_dssp             E-ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT--TCSSCEEEEECSSCC------------EEEEEETTE
T ss_pred             E-EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC--CCCceEEeecCCCce------------EEEEecCCc
Confidence            2 122221 111222 223565444444333 3457777765  456787775422211            122233445


Q ss_pred             EEEEEEc---CCccEEEEEccccCCcc-cEEEe
Q 046684          312 AICLYRE---VGLGMIIWREDEDKRKW-EWVWV  340 (373)
Q Consensus       312 ~i~~~~~---~~~~~~~yd~~~~~~~~-~W~~~  340 (373)
                       +|+...   ....++.+|++  +.+. .|+.+
T Consensus       284 -l~~~s~~~~~~~~l~~~d~~--~~~~~~~~~l  313 (695)
T 2bkl_A          284 -FYVLTDEGAPRQRVFEVDPA--KPARASWKEI  313 (695)
T ss_dssp             -EEEEECTTCTTCEEEEEBTT--BCSGGGCEEE
T ss_pred             -EEEEECCCCCCCEEEEEeCC--CCCccCCeEE
Confidence             666654   24579999987  6510 27655

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.78  E-value=13  Score=36.27  Aligned_cols=142  Identities=16%  Similarity=0.116  Sum_probs=75.3

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCC-CCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSR-TNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~-~~~~~~~~~~~~  141 (373)
                      ..+..||+.++++... ....+.....+...+|.|++...    .-++.||+.+++.+.+....... ......+..+. 
T Consensus        82 ~Gl~~yd~~~~~f~~~-~~~~~~~i~~i~~~~g~lWigt~----~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-  155 (758)
T 3ott_A           82 NGILVYNYRADRYEQP-ETDFPTDVRTMALQGDTLWLGAL----NGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-  155 (758)
T ss_dssp             TEEEEEETTTTEECCC-SCCCCSCEEEEEEETTEEEEEET----TEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-
T ss_pred             CCeEEEeCCCCEEECc-ccCCCceEEEEEecCCcEEEEcC----CcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-
Confidence            3567799988776542 11111111223345788888654    36899999998877653211111 11122233321 


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEEC--CEEEEEEcCCc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTR--GMLYWITSARA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~  219 (373)
                        +     +.|++.. .           ..+..|+..+++.+.... |...   ............+  +...|+|.  .
T Consensus       156 --~-----g~lWigt-~-----------~Gl~~~~~~~~~~~~~~~-~~~~---~~~~~~i~~i~~d~~~~~lWigt--~  210 (758)
T 3ott_A          156 --D-----NQIYVGT-Y-----------NGLCRYIPSNGKFEGIPL-PVHS---SQSNLFVNSLLEDTTRQCVWIGT--E  210 (758)
T ss_dssp             --T-----CCEEEEE-T-----------TEEEEEETTTTEEEEECC-CCCT---TCSSCCEEEEEEETTTTEEEEEE--E
T ss_pred             --C-----CCEEEEe-C-----------CCHhhCccCCCceEEecC-CCcc---ccccceeEEEEEECCCCEEEEEE--C
Confidence              1     6677732 1           247889998888765532 1100   0000011122232  44445543  3


Q ss_pred             eEEEEEECCCCcEEec
Q 046684          220 YSVIGFDIESNTWREL  235 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~  235 (373)
                      ..+..||+.++++...
T Consensus       211 ~Gl~~~~~~~~~~~~~  226 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQT  226 (758)
T ss_dssp             EEEEEEETTTTEEEEE
T ss_pred             CCCeEEcCCCCeEEec
Confidence            5799999999988765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=90.68  E-value=12  Score=35.73  Aligned_cols=123  Identities=11%  Similarity=-0.027  Sum_probs=63.4

Q ss_pred             eEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeec
Q 046684          107 LQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIG  186 (373)
Q Consensus       107 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~  186 (373)
                      ..+...+..+..-..+-+++.-..  ..++..+..  +     ++||.....          ...+..++......+.+.
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~--~~~l~~d~~--~-----~~lywtD~~----------~~~I~r~~~~g~~~~~v~   75 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKE--ASALDFDVT--D-----NRIYWTDIS----------LKTISRAFMNGSALEHVV   75 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSC--EEEEEEETT--T-----TEEEEEETT----------TTEEEEEETTSCSCEEEE
T ss_pred             CcEEEEECCCCCcceEEEcCCCCc--eEEEEEECC--C-----CEEEEEECC----------CCeEEEEECCCCCcEEEE
Confidence            567777777654433322222111  222222211  1     788887532          246788887765555443


Q ss_pred             CCCccccccceeccCCceEE--ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEE
Q 046684          187 SMPVEFAVRLTVWTPNESVC--TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIG  259 (373)
Q Consensus       187 ~~p~~~~~~~~~~~~~~~~~--~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~g  259 (373)
                      ....        ......++  .++.|||.. .....|.++|+....-+.+ ..... ..-.++++-  +|.||+..
T Consensus        76 ~~g~--------~~P~GlAvD~~~~~LY~tD-~~~~~I~v~~~dG~~~~~l-~~~~l-~~P~~iavdp~~G~lY~tD  141 (628)
T 4a0p_A           76 EFGL--------DYPEGMAVDWLGKNLYWAD-TGTNRIEVSKLDGQHRQVL-VWKDL-DSPRALALDPAEGFMYWTE  141 (628)
T ss_dssp             CSSC--------SCCCEEEEETTTTEEEEEE-TTTTEEEEEETTSTTCEEE-ECSSC-CCEEEEEEETTTTEEEEEE
T ss_pred             eCCC--------CCcceEEEEeCCCEEEEEE-CCCCEEEEEecCCCcEEEE-EeCCC-CCcccEEEccCCCeEEEeC
Confidence            2210        11122333  368999984 4567899999976543333 21111 111244443  68888876

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=90.67  E-value=9.1  Score=34.57  Aligned_cols=202  Identities=8%  Similarity=-0.035  Sum_probs=97.1

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|.||+....   ..+.++|+.+++...+..   ....+....+. ..        ++||+.....      ......+.
T Consensus       152 ~g~Lyv~D~~---~~I~~id~~~g~v~~~~~---~~~~P~giavd-~d--------G~lyVad~~~------~~~~~gv~  210 (433)
T 4hw6_A          152 YDDLYWVGQR---DAFRHVDFVNQYVDIKTT---NIGQCADVNFT-LN--------GDMVVVDDQS------SDTNTGIY  210 (433)
T ss_dssp             TCEEEEECBT---SCEEEEETTTTEEEEECC---CCSCEEEEEEC-TT--------CCEEEEECCS------CTTSEEEE
T ss_pred             CCEEEEEeCC---CCEEEEECCCCEEEEeec---CCCCccEEEEC-CC--------CCEEEEcCCC------CcccceEE
Confidence            4889998753   789999999888776543   11112222222 11        4588875321      11123355


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcE-EecccCCCCCCCceeEEE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTW-RELSAPMADRLEFATLVS  250 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w-~~~~~~~p~~~~~~~~~~  250 (373)
                      .++.. +.+.....++       .......+++.  +|.||+. ......|..||+.+.+. ..+ ...........++.
T Consensus       211 ~~~~~-~~~~~~~~~~-------~~~~P~giavd~~~G~lyv~-d~~~~~V~~~d~~~g~~~~~~-~~~~~~~~~~~ia~  280 (433)
T 4hw6_A          211 LFTRA-SGFTERLSLC-------NARGAKTCAVHPQNGKIYYT-RYHHAMISSYDPATGTLTEEE-VMMDTKGSNFHIVW  280 (433)
T ss_dssp             EECGG-GTTCCEEEEE-------ECSSBCCCEECTTTCCEEEC-BTTCSEEEEECTTTCCEEEEE-EECSCCSSCEEEEE
T ss_pred             EEECC-CCeecccccc-------ccCCCCEEEEeCCCCeEEEE-ECCCCEEEEEECCCCeEEEEE-eccCCCCCcccEEE
Confidence            55543 2232111110       11112223333  6889987 34467899999987765 333 11111111223443


Q ss_pred             E-CC-EEEEEEeecCCceEEEEeecCCCCCCeE---EEEeech-hhhhhh-cCCCCCCCceEEEe----------cCCEE
Q 046684          251 R-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWC---LIEKVPI-EMGMRL-SGGKASWGGTRCAA----------GNGAI  313 (373)
Q Consensus       251 ~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~---~v~~~p~-~~~~~~-~~~~~~~~~~~~~~----------~~~~i  313 (373)
                      . +| .||+..... ..+..++++.  .+....   .+..... ..+..- ........+..++.          .++.|
T Consensus       281 dpdG~~LYvad~~~-~~I~~~~~d~--~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l  357 (433)
T 4hw6_A          281 HPTGDWAYIIYNGK-HCIYRVDYNR--ETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF  357 (433)
T ss_dssp             CTTSSEEEEEETTT-TEEEEEEBCT--TTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred             eCCCCEEEEEeCCC-CEEEEEeCCC--CCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence            3 44 488875322 2234444442  233321   2211100 000000 00000112344444          46799


Q ss_pred             EEEEcCCccEEEEEcc
Q 046684          314 CLYREVGLGMIIWRED  329 (373)
Q Consensus       314 ~~~~~~~~~~~~yd~~  329 (373)
                      |+.+.....|..+|++
T Consensus       358 yvaD~~n~~I~~~~~~  373 (433)
T 4hw6_A          358 YFCDRDSHTVRVLTPE  373 (433)
T ss_dssp             EEEETTTTEEEEECTT
T ss_pred             EEEECCCCEEEEECCC
Confidence            9999888889999975

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=90.38  E-value=2  Score=41.59  Aligned_cols=120  Identities=11%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             eEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCCC--------CCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          204 SVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMADR--------LEFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       204 ~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~--------~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      .++.+|.+|+..  ....+.++|.+++  .|+.- ...+..        ....+.+..+++||+...  +..+..++.++
T Consensus        66 P~v~~g~vyv~~--~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--dg~l~AlDa~T  140 (689)
T 1yiq_A           66 PIVVDGVMYTTG--PFSVVYALDARDGRLIWKYD-PQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--DGRLEAIDAKT  140 (689)
T ss_dssp             CEEETTEEEEEC--GGGCEEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--TSEEEEEETTT
T ss_pred             CEEECCEEEEEc--CCCeEEEEECCCCceeEEEc-CCCCccccccccccCCCCccEEECCEEEEEcc--CCEEEEEECCC
Confidence            467899999984  3467999999876  48754 222211        112234567888877542  22344555444


Q ss_pred             CCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc-----CCccEEEEEccccCCcccEEEe
Q 046684          274 GGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE-----VGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       274 ~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                        .+..|+.-..........        .....+..++.+|+...     ..+.+..||.+  +++..|+.-
T Consensus       141 --G~~~W~~~~~~~~~~~~~--------~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~  200 (689)
T 1yiq_A          141 --GQRAWSVDTRADHKRSYT--------ITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAE--TGKEAWRFY  200 (689)
T ss_dssp             --CCEEEEEECCSCTTSCCB--------CCSCCEEETTEEEECCBCTTTCCBCEEEEEETT--TCCEEEEEE
T ss_pred             --CCEeeeecCcCCCCCCcc--------ccCCcEEECCEEEEEeCCCccCCCCEEEEEECC--CCcEEEEec
Confidence              444587643211110000        01122335788887542     24579999999  997778864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=90.35  E-value=13  Score=35.79  Aligned_cols=96  Identities=10%  Similarity=0.068  Sum_probs=48.6

Q ss_pred             ceEEEEECCC-CceeeecCCCccccccceeccCCceEEECCE-EEEEEc---CCceEEEEEECCCCcEEecccCCCCC--
Q 046684          170 SMVEMYDSRH-DAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITS---ARAYSVIGFDIESNTWRELSAPMADR--  242 (373)
Q Consensus       170 ~~~~~yd~~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg---~~~~~i~~yd~~~~~w~~~~~~~p~~--  242 (373)
                      ..++++|..+ ++-+.+...+.     ..... ..+++-+|+ |++...   .....|..+|+.+++...+ ......  
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~-----~~~~~-~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~  335 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKE-----QDIYL-ARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL-AHETSPTW  335 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSC-----SSEEE-EEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEE-EEEECSSC
T ss_pred             eEEEEEECCCCCceEEecCCCC-----cceEE-EEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEE-EEcCCCCc
Confidence            4788889887 76544432100     00101 111224554 444431   2356899999999887665 222211  


Q ss_pred             --CCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          243 --LEFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       243 --~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                        ....-...-+|++++.+.. +....+|.++.
T Consensus       336 ~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~~~  367 (741)
T 2ecf_A          336 VPLHNSLRFLDDGSILWSSER-TGFQHLYRIDS  367 (741)
T ss_dssp             CCCCSCCEECTTSCEEEEECT-TSSCEEEEECS
T ss_pred             CCcCCceEECCCCeEEEEecC-CCccEEEEEcC
Confidence              0111223347776555543 33358888874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=90.09  E-value=8.1  Score=32.87  Aligned_cols=144  Identities=10%  Similarity=0.051  Sum_probs=71.2

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCce-eeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW-QIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~  227 (373)
                      ++.++.|+.+          ..+.+||..+++- +.+..-.         ..-..+++. ++.+.+.+ .....|..+|+
T Consensus        77 g~~l~s~s~D----------~~v~~wd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~-s~D~~i~vwd~  136 (319)
T 3frx_A           77 GAYALSASWD----------KTLRLWDVATGETYQRFVGHK---------SDVMSVDIDKKASMIISG-SRDKTIKVWTI  136 (319)
T ss_dssp             SSEEEEEETT----------SEEEEEETTTTEEEEEEECCS---------SCEEEEEECTTSCEEEEE-ETTSCEEEEET
T ss_pred             CCEEEEEeCC----------CEEEEEECCCCCeeEEEccCC---------CcEEEEEEcCCCCEEEEE-eCCCeEEEEEC
Confidence            5555666554          4689999987652 2221110         000111121 34554443 44567888898


Q ss_pred             CCCcEEecccCCCCCCCceeEEEEC------CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCC
Q 046684          228 ESNTWRELSAPMADRLEFATLVSRN------QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASW  301 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~~------g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~  301 (373)
                      ..+.-..+ ....  .....+....      +..+++.+..+..+.+|++..      ......+..-.         ..
T Consensus       137 ~~~~~~~~-~~h~--~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~~~h~---------~~  198 (319)
T 3frx_A          137 KGQCLATL-LGHN--DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADFIGHN---------SN  198 (319)
T ss_dssp             TSCEEEEE-CCCS--SCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEECCCC---------SC
T ss_pred             CCCeEEEE-eccC--CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheeecCCC---------Cc
Confidence            76554443 1111  1111111111      222344444555689999854      23333322110         00


Q ss_pred             CceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          302 GGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       302 ~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ....+...++..++.++..+.+.+||+.  ++
T Consensus       199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~--~~  228 (319)
T 3frx_A          199 INTLTASPDGTLIASAGKDGEIMLWNLA--AK  228 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETT--TT
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECC--CC
Confidence            0122333466777778888889999999  77

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=90.06  E-value=13  Score=35.22  Aligned_cols=174  Identities=11%  Similarity=0.113  Sum_probs=90.7

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEEC-CCCc--eeeecCCCcccc-ccceeccCCceEE--ECCE----EEEEEcCCc
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDS-RHDA--WQIIGSMPVEFA-VRLTVWTPNESVC--TRGM----LYWITSARA  219 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~-~~~~--W~~~~~~p~~~~-~~~~~~~~~~~~~--~~g~----ly~~gg~~~  219 (373)
                      ++||+.....          ..++.+|. ++++  |+.-...+.... .+.........++  .+++    +|+..  ..
T Consensus        63 g~vyv~~~~~----------~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t--~d  130 (599)
T 1w6s_A           63 GKMYIHTSFP----------NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ--LD  130 (599)
T ss_dssp             TEEEEECSTT----------TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC--TT
T ss_pred             CEEEEEeCCC----------CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc--CC
Confidence            8888876411          35888998 7765  987554421100 0000111233455  6787    88863  45


Q ss_pred             eEEEEEECCCCc--EEecccCCCC--CCCceeEEEECCEEEEEEeec----CCceEEEEeecCCCCCCeEEEEeechhhh
Q 046684          220 YSVIGFDIESNT--WRELSAPMAD--RLEFATLVSRNQKLTLIGGTC----GGDACVWELSEGGDDDIWCLIEKVPIEMG  291 (373)
Q Consensus       220 ~~i~~yd~~~~~--w~~~~~~~p~--~~~~~~~~~~~g~l~~~gg~~----~~~~~i~~~~~~~~~~~W~~v~~~p~~~~  291 (373)
                      ..++++|.++++  |+.- ...+.  ......-++.+|.+|+..+..    ...+..++.++  .+..|+.-..-+....
T Consensus       131 g~l~AlDa~TG~~~W~~~-~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~T--G~~~W~~~~~~~~~~~  207 (599)
T 1w6s_A          131 GNVAALNAETGETVWKVE-NSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKT--GEQVWRAYATGPDKDL  207 (599)
T ss_dssp             SEEEEEETTTCCEEEEEE-CCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTT--CCEEEEEESSSCHHHH
T ss_pred             CEEEEEECCCCCEEEeec-CCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCC--CcEEEEEcCCCCcccc
Confidence            789999998774  7754 22111  111223345688877644211    12345555544  4455776433222100


Q ss_pred             --------------------h-----hh-cCCCCCCCceEEEecCCEEEEEEcC---------------CccEEEEEccc
Q 046684          292 --------------------M-----RL-SGGKASWGGTRCAAGNGAICLYREV---------------GLGMIIWREDE  330 (373)
Q Consensus       292 --------------------~-----~~-~~~~~~~~~~~~~~~~~~i~~~~~~---------------~~~~~~yd~~~  330 (373)
                                          .     .. .++-..+........++.||+-.+.               ...++..|++ 
T Consensus       208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~-  286 (599)
T 1w6s_A          208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD-  286 (599)
T ss_dssp             TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-
T ss_pred             ccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-
Confidence                                0     00 0000011122333457788876543               2479999999 


Q ss_pred             cCCcccEEEe
Q 046684          331 DKRKWEWVWV  340 (373)
Q Consensus       331 ~~~~~~W~~~  340 (373)
                       +++..|+.-
T Consensus       287 -TG~~~W~~q  295 (599)
T 1w6s_A          287 -TGEAKFGYQ  295 (599)
T ss_dssp             -TCCEEEEEE
T ss_pred             -CCceeeEee
Confidence             998888753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=90.04  E-value=9.6  Score=33.61  Aligned_cols=67  Identities=13%  Similarity=-0.069  Sum_probs=39.7

Q ss_pred             ceEEEEEecCC-Ce-eEEEEeCCCCCcc-ccCCCCCCCCceeEEeeCcEEEEeeCC-------CCceEEEEEcCcccce
Q 046684           51 AWFLALPTRNR-GL-CCYVHNPVSDKWH-VLSLDFLPYPVRPVSSIGSFLLLRPIN-------STILQLVLCNPFTRQF  119 (373)
Q Consensus        51 ~~l~~~~~~~~-~~-~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~~g~l~~~gg~-------~~~~~~~v~np~t~~w  119 (373)
                      ..+++.....+ .. .+.++|+.+.+-. .++....|  ...+..-+..+|+....       ...+.+.++|+.|++-
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            44555433322 12 7778998886543 33444444  33344446678887521       1246799999999874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=89.81  E-value=15  Score=35.48  Aligned_cols=141  Identities=11%  Similarity=0.065  Sum_probs=68.9

Q ss_pred             EEEEEcCcc-cceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          108 QLVLCNPFT-RQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       108 ~~~v~np~t-~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      .++++|..+ ++-+.+.... .......++. .++         ..|++... +     .......++++|..+++.+.+
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg---------~~l~~~~~-~-----~~~~~~~i~~~d~~~g~~~~~  327 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP---------QHLSFQRQ-S-----RDQKKLDLVEVTLASNQQRVL  327 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET---------TEEEEEEE-E-----TTSSEEEEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC---------CEEEEEEe-c-----ccCCeEEEEEEECCCCceEEE
Confidence            788999988 7765543221 1111122333 321         34444432 1     122346789999998876655


Q ss_pred             cCCCccccccceec-cCCceEE-ECCEEEEEEcCC-ceEEEEEECCCCcEEecccCCCCCCCceeE--EEECCE-EEEEE
Q 046684          186 GSMPVEFAVRLTVW-TPNESVC-TRGMLYWITSAR-AYSVIGFDIESNTWRELSAPMADRLEFATL--VSRNQK-LTLIG  259 (373)
Q Consensus       186 ~~~p~~~~~~~~~~-~~~~~~~-~~g~ly~~gg~~-~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~--~~~~g~-l~~~g  259 (373)
                      .....     .... .....++ -+|++++.+... ...++.+|...+ ...+ ...  ......+  ..-+|+ |++.+
T Consensus       328 ~~~~~-----~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~--~~~v~~~~~~s~dg~~l~~~~  398 (741)
T 2ecf_A          328 AHETS-----PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-THG--NWSVDELLAVDEKAGLAYFRA  398 (741)
T ss_dssp             EEEEC-----SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-CCS--SSCEEEEEEEETTTTEEEEEE
T ss_pred             EEcCC-----CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-eec--ceEEEeEeEEeCCCCEEEEEE
Confidence            32210     0000 0012222 367766665322 357888887666 5555 221  1111122  233554 55555


Q ss_pred             eecCC-ceEEEEeec
Q 046684          260 GTCGG-DACVWELSE  273 (373)
Q Consensus       260 g~~~~-~~~i~~~~~  273 (373)
                      ..++. .+.+|..+.
T Consensus       399 ~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          399 GIESARESQIYAVPL  413 (741)
T ss_dssp             CSSCTTCBEEEEEET
T ss_pred             eCCCCceEEEEEEEc
Confidence            43321 468999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=89.69  E-value=8.6  Score=32.58  Aligned_cols=192  Identities=6%  Similarity=-0.146  Sum_probs=94.6

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      .+|.||+....  ...++++|+.++.-...+ .+.   .+...... +   +     +++|+.....        ....+
T Consensus        41 ~~g~lyv~d~~--~~~I~~~d~~g~~~~~~~-~~~---~p~gia~~-~---d-----G~l~vad~~~--------~~~~v   97 (306)
T 2p4o_A           41 PDGTIFVTNHE--VGEIVSITPDGNQQIHAT-VEG---KVSGLAFT-S---N-----GDLVATGWNA--------DSIPV   97 (306)
T ss_dssp             TTSCEEEEETT--TTEEEEECTTCCEEEEEE-CSS---EEEEEEEC-T---T-----SCEEEEEECT--------TSCEE
T ss_pred             CCCCEEEEeCC--CCeEEEECCCCceEEEEe-CCC---CceeEEEc-C---C-----CcEEEEeccC--------CcceE
Confidence            36778887642  467899999875322221 111   11111221 1   1     6688765221        01357


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceE-EECCEEEEEEcCCceEEEEEECCCCcEEe--cccC----CC--CCC
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGMLYWITSARAYSVIGFDIESNTWRE--LSAP----MA--DRL  243 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~~~~i~~yd~~~~~w~~--~~~~----~p--~~~  243 (373)
                      ..||..+++.+.+...+..       +.....+ ..++.+|+.. .....|+.+|+.+.+-+.  ....    .+  ...
T Consensus        98 ~~~d~~~g~~~~~~~~~~~-------~~~~g~~~~~~~~~~v~d-~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~  169 (306)
T 2p4o_A           98 VSLVKSDGTVETLLTLPDA-------IFLNGITPLSDTQYLTAD-SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  169 (306)
T ss_dssp             EEEECTTSCEEEEEECTTC-------SCEEEEEESSSSEEEEEE-TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             EEEcCCCCeEEEEEeCCCc-------cccCcccccCCCcEEEEE-CCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence            7888888887766544311       1111112 2345677763 345689999987642211  1000    11  111


Q ss_pred             CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccE
Q 046684          244 EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGM  323 (373)
Q Consensus       244 ~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  323 (373)
                      ...++..-++.||+.... ...+.+++++..+.....+.+.....       +      .-.++..++.||+.....+.|
T Consensus       170 ~pngis~dg~~lyv~d~~-~~~I~~~~~~~~g~~~~~~~~~~~~~-------P------~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          170 AANGLKRFGNFLYVSNTE-KMLLLRIPVDSTDKPGEPEIFVEQTN-------I------DDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             SEEEEEEETTEEEEEETT-TTEEEEEEBCTTSCBCCCEEEEESCC-------C------SSEEEBTTCCEEEECBTTCCE
T ss_pred             cCCCcCcCCCEEEEEeCC-CCEEEEEEeCCCCCCCccEEEeccCC-------C------CCeEECCCCCEEEEeCCCCeE
Confidence            222343334578887632 23355555542001011122222110       0      133344467899988777789


Q ss_pred             EEEEcc
Q 046684          324 IIWRED  329 (373)
Q Consensus       324 ~~yd~~  329 (373)
                      .+||++
T Consensus       236 ~~~~~~  241 (306)
T 2p4o_A          236 VRIAPD  241 (306)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            999987

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=89.31  E-value=11  Score=33.12  Aligned_cols=188  Identities=7%  Similarity=0.017  Sum_probs=87.3

Q ss_pred             ceEEEEEcCcc--cceeccCCCC-----CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECC
Q 046684          106 ILQLVLCNPFT--RQFRYLPLLN-----VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR  178 (373)
Q Consensus       106 ~~~~~v~np~t--~~w~~lp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~  178 (373)
                      ...++++|+.+  .+-+++....     ..-.-+.+.+..+ ..+.     .+||++....      ......+..++..
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d-~dg~-----~~L~Vvnh~~------~~s~ielf~~d~~  149 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID-DDNT-----VYLLVVNHPG------SSSTVEVFKFQEE  149 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC-TTCC-----EEEEEEECST------TCCEEEEEEEETT
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC-CCCc-----EEEEEEECCC------CCCeEEEEEEECC
Confidence            45788899874  3344443211     1223345555443 1222     6788885321      1122344445665


Q ss_pred             CCceeeecCCCccccccceeccCCceEEECCEEEEEEcC----------------CceEEEEEECCCCcEEecccCCCCC
Q 046684          179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----------------RAYSVIGFDIESNTWRELSAPMADR  242 (373)
Q Consensus       179 ~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----------------~~~~i~~yd~~~~~w~~~~~~~p~~  242 (373)
                      ++..+.+......    ...+.+...+.-+|.+|+-...                ....++.||+.  +.+.+...+   
T Consensus       150 ~~~~~~~~~~~g~----~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l---  220 (355)
T 3sre_A          150 EKSLLHLKTIRHK----LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGF---  220 (355)
T ss_dssp             TTEEEEEEEECCT----TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEE---
T ss_pred             CCEEEEEeccccC----CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCC---
Confidence            5555544433211    1112222334457888876421                23678899884  344331111   


Q ss_pred             CCceeEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE-Eec-CCEEEEEEc
Q 046684          243 LEFATLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC-AAG-NGAICLYRE  318 (373)
Q Consensus       243 ~~~~~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~  318 (373)
                      ...-+++.. +| .||+..... ..+.+|+++.   ..+.........+..           +=.+ +.. +|.+|+...
T Consensus       221 ~~pNGia~spDg~~lYvadt~~-~~I~~~~~~~---~g~l~~~~~~~~~g~-----------PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLA-HKIHVYEKHA---NWTLTPLRVLSFDTL-----------VDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGG-TEEEEEEECT---TSCEEEEEEEECSSE-----------EEEEEECTTTCCEEEEEE
T ss_pred             cccCcceECCCCCEEEEEeCCC-CeEEEEEECC---CCcEecCEEEeCCCC-----------CceEEEeCCCCcEEEEec
Confidence            112244443 44 577765433 3356666653   234443333311111           2233 333 478888543


Q ss_pred             -CCccEEEEEcc
Q 046684          319 -VGLGMIIWRED  329 (373)
Q Consensus       319 -~~~~~~~yd~~  329 (373)
                       ....+..||++
T Consensus       286 ~~g~~v~~~~P~  297 (355)
T 3sre_A          286 PNGMRIFFYDAE  297 (355)
T ss_dssp             SCHHHHHSCCTT
T ss_pred             CCceEEEEECCC
Confidence             32345555554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=89.31  E-value=13  Score=35.21  Aligned_cols=110  Identities=10%  Similarity=0.052  Sum_probs=55.8

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +...++.+.....+..+|..+.+....   +..+......+.  -+|++++.++. +..+.+|++..    .+-  +..+
T Consensus       159 ~~~~l~s~s~D~~v~lwd~~~~~~~~~---l~~H~~~V~~v~fspdg~~las~s~-D~~i~lwd~~~----g~~--~~~~  228 (611)
T 1nr0_A          159 RPFRIISGSDDNTVAIFEGPPFKFKST---FGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGVD----GTK--TGVF  228 (611)
T ss_dssp             SSCEEEEEETTSCEEEEETTTBEEEEE---ECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT----CCE--EEEC
T ss_pred             CCeEEEEEeCCCeEEEEECCCCeEeee---eccccCceEEEEECCCCCEEEEEEC-CCcEEEEECCC----CcE--eeee
Confidence            333333344567788888776544322   222222222222  26776666654 44579999865    322  2222


Q ss_pred             chhhhhhhcCCCCCCCceEE-EecCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRC-AAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .......  .+.... ...+ ...++..++.++.++.+.+||.+  +.
T Consensus       229 ~~~~~~~--~~h~~~-V~~v~~spdg~~l~s~s~D~~v~lWd~~--~~  271 (611)
T 1nr0_A          229 EDDSLKN--VAHSGS-VFGLTWSPDGTKIASASADKTIKIWNVA--TL  271 (611)
T ss_dssp             BCTTSSS--CSSSSC-EEEEEECTTSSEEEEEETTSEEEEEETT--TT
T ss_pred             ccccccc--cccCCC-EEEEEECCCCCEEEEEeCCCeEEEEeCC--CC
Confidence            1110000  000010 1222 23366777778777889999998  77

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=89.23  E-value=4.4  Score=42.05  Aligned_cols=144  Identities=8%  Similarity=-0.004  Sum_probs=75.4

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceee-ecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI-IGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~  227 (373)
                      ++.++.|+.+          ..+.+||..+++-.. +..-        . ..-..+++. +|.+.+.+ ...+.|..+|+
T Consensus       627 ~~~l~s~~~d----------~~i~vw~~~~~~~~~~~~~h--------~-~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~  686 (1249)
T 3sfz_A          627 GQRIASCGAD----------KTLQVFKAETGEKLLDIKAH--------E-DEVLCCAFSSDDSYIATC-SADKKVKIWDS  686 (1249)
T ss_dssp             SSEEEEEETT----------SCEEEEETTTCCEEEEECCC--------S-SCEEEEEECTTSSEEEEE-ETTSEEEEEET
T ss_pred             CCEEEEEeCC----------CeEEEEECCCCCEEEEeccC--------C-CCEEEEEEecCCCEEEEE-eCCCeEEEEEC
Confidence            5566666554          368999988775322 1111        0 000111221 45555554 34677999999


Q ss_pred             CCCcEEecccCCCCCCCceeEEEE-C--CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce
Q 046684          228 ESNTWRELSAPMADRLEFATLVSR-N--QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT  304 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~-~--g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~  304 (373)
                      .+++.... ..  .+......+.. .  +..+++.+..+..+.+|++..    ..  .+..+....         .....
T Consensus       687 ~~~~~~~~-~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~----~~--~~~~~~~h~---------~~v~~  748 (1249)
T 3sfz_A          687 ATGKLVHT-YD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ----KE--CRNTMFGHT---------NSVNH  748 (1249)
T ss_dssp             TTCCEEEE-EE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS----SS--EEEEECCCS---------SCEEE
T ss_pred             CCCceEEE-Ec--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC----cc--hhheecCCC---------CCEEE
Confidence            88765433 11  12222222222 2  444555555556689999865    33  222222110         00012


Q ss_pred             EEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          305 RCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       305 ~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .++..++..++.++..+.+.+||.+  ++
T Consensus       749 ~~~sp~~~~l~s~s~dg~v~vwd~~--~~  775 (1249)
T 3sfz_A          749 CRFSPDDELLASCSADGTLRLWDVR--SA  775 (1249)
T ss_dssp             EEECSSTTEEEEEESSSEEEEEEGG--GT
T ss_pred             EEEecCCCEEEEEECCCeEEEEeCC--CC
Confidence            2333456677777777789999998  66

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=89.21  E-value=11  Score=32.97  Aligned_cols=195  Identities=7%  Similarity=-0.049  Sum_probs=96.1

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      +.+|...++++.+....+.+||+.+.+.........  .-..+++  .+        ++++++.++.+           .
T Consensus       142 SpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~--~V~~v~f--sp--------dg~~l~s~s~~-----------~  198 (365)
T 4h5i_A          142 SREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG--EVKDLHF--ST--------DGKVVAYITGS-----------S  198 (365)
T ss_dssp             CTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS--CCCEEEE--CT--------TSSEEEEECSS-----------C
T ss_pred             cCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC--ceEEEEE--cc--------CCceEEeccce-----------e
Confidence            446655443332335679999999887644322111  1112222  11        15666655432           3


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC---ceEEEEEECCCCcEEecc-cCCCCCCCcee
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR---AYSVIGFDIESNTWRELS-APMADRLEFAT  247 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~~~i~~yd~~~~~w~~~~-~~~p~~~~~~~  247 (373)
                      +.+++..++.-........     +..........-+|...+.++..   ...+..+|.......... ...........
T Consensus       199 ~~~~~~~~~~~~~~~~~~~-----~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          199 LEVISTVTGSCIARKTDFD-----KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT  273 (365)
T ss_dssp             EEEEETTTCCEEEEECCCC-----TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE
T ss_pred             EEEEEeccCcceeeeecCC-----CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE
Confidence            6677776665432221110     00001111122467766665322   235677777766554331 11122222222


Q ss_pred             EEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEE
Q 046684          248 LVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMII  325 (373)
Q Consensus       248 ~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  325 (373)
                      .+.  -+|++++.++. +..+.+|+++.      .+.+..+...-        .......++..++..++.+..++.|.+
T Consensus       274 ~~~~Spdg~~lasgs~-D~~V~iwd~~~------~~~~~~~~~gH--------~~~V~~v~fSpdg~~laS~S~D~tvrv  338 (365)
T 4h5i_A          274 SMDVDMKGELAVLASN-DNSIALVKLKD------LSMSKIFKQAH--------SFAITEVTISPDSTYVASVSAANTIHI  338 (365)
T ss_dssp             EEEECTTSCEEEEEET-TSCEEEEETTT------TEEEEEETTSS--------SSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             eEEECCCCCceEEEcC-CCEEEEEECCC------CcEEEEecCcc--------cCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            222  26777666654 44589998854      34554432211        001123334457888888888888999


Q ss_pred             EEcc
Q 046684          326 WRED  329 (373)
Q Consensus       326 yd~~  329 (373)
                      +|+.
T Consensus       339 w~ip  342 (365)
T 4h5i_A          339 IKLP  342 (365)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9986

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=88.87  E-value=5.6  Score=33.79  Aligned_cols=106  Identities=9%  Similarity=0.046  Sum_probs=61.7

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +|.+|+.. .....|..||++.+.-...  ..+.  .-.+++. -+|+||+....... ..++.++.  .+.+.+.+..+
T Consensus        42 ~g~lyv~d-~~~~~I~~~d~~g~~~~~~--~~~~--~p~gia~~~dG~l~vad~~~~~-~~v~~~d~--~~g~~~~~~~~  113 (306)
T 2p4o_A           42 DGTIFVTN-HEVGEIVSITPDGNQQIHA--TVEG--KVSGLAFTSNGDLVATGWNADS-IPVVSLVK--SDGTVETLLTL  113 (306)
T ss_dssp             TSCEEEEE-TTTTEEEEECTTCCEEEEE--ECSS--EEEEEEECTTSCEEEEEECTTS-CEEEEEEC--TTSCEEEEEEC
T ss_pred             CCCEEEEe-CCCCeEEEECCCCceEEEE--eCCC--CceeEEEcCCCcEEEEeccCCc-ceEEEEcC--CCCeEEEEEeC
Confidence            68899884 3457899999987532222  2221  1223333 26788887643222 24666554  44667766665


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +...+.          ...+...++.+|+.....+.++.+|+.  ++
T Consensus       114 ~~~~~~----------~g~~~~~~~~~~v~d~~~g~i~~~d~~--~~  148 (306)
T 2p4o_A          114 PDAIFL----------NGITPLSDTQYLTADSYRGAIWLIDVV--QP  148 (306)
T ss_dssp             TTCSCE----------EEEEESSSSEEEEEETTTTEEEEEETT--TT
T ss_pred             CCcccc----------CcccccCCCcEEEEECCCCeEEEEeCC--CC
Confidence            432211          122334567788877666789999987  64

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=88.75  E-value=4.7  Score=38.15  Aligned_cols=121  Identities=11%  Similarity=0.089  Sum_probs=65.3

Q ss_pred             ceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCCCC------CceeEEEECCEEEEEEeecCCceEEEEeecC
Q 046684          203 ESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMADRL------EFATLVSRNQKLTLIGGTCGGDACVWELSEG  274 (373)
Q Consensus       203 ~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~~------~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~  274 (373)
                      ..++.+|.+|+....  ..+.++|.+++  .|+.- ...+...      ...+.+..+++||+...  +..+..++.++ 
T Consensus        63 ~P~v~~g~vyv~~~~--~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~--dg~l~AlD~~T-  136 (582)
T 1flg_A           63 QAIVSDGVIYVTASY--SRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAIYGDKVFFGTL--DASVVALNKNT-  136 (582)
T ss_dssp             CCEEETTEEEEEETT--TEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEEETTEEEEEET--TTEEEEEESSS-
T ss_pred             ccEEECCEEEEEcCC--CCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEEECCEEEEEeC--CCEEEEEECCC-
Confidence            347789999998532  24999999876  48765 2322110      12344567888887542  22344444444 


Q ss_pred             CCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec--CC--EEEEEEc-----CCccEEEEEccccCCcccEEE
Q 046684          275 GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG--NG--AICLYRE-----VGLGMIIWREDEDKRKWEWVW  339 (373)
Q Consensus       275 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~--~~--~i~~~~~-----~~~~~~~yd~~~~~~~~~W~~  339 (373)
                       .+..|+.-..-+.... .      ......++..  ++  .||+-..     ..+.+..||.+  +++..|+.
T Consensus       137 -G~~~W~~~~~~~~~~~-~------~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~--tG~~~W~~  200 (582)
T 1flg_A          137 -GKVVWKKKFADHGAGY-T------MTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD--TGEEIWMR  200 (582)
T ss_dssp             -CCEEEEEECSCGGGTC-B------CCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT--TCCEEEEE
T ss_pred             -CCEEeeecCCCCCcCc-c------cccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC--CCCEEeec
Confidence             4445875322111100 0      0011222211  12  5655321     24679999999  99778974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=88.42  E-value=11  Score=32.06  Aligned_cols=54  Identities=15%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             cCCceEEEEEECCCCcEEecccCCCCCCCce-eEEEE-CCEEEEEEeecCCceEEEEeec
Q 046684          216 SARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVSR-NQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       216 g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~~-~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      +.....|..+|+.+.+-...   +..+.... .++.. +|++++.++ .+..+.+|++..
T Consensus       172 ~~~d~~i~~wd~~~~~~~~~---~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd~~~  227 (319)
T 3frx_A          172 AGNDKMVKAWNLNQFQIEAD---FIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAA  227 (319)
T ss_dssp             EETTSCEEEEETTTTEEEEE---ECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT
T ss_pred             EeCCCEEEEEECCcchhhee---ecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Confidence            44567788899887654322   11111112 22222 566666554 445589999865

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=88.23  E-value=12  Score=32.20  Aligned_cols=103  Identities=8%  Similarity=-0.070  Sum_probs=57.3

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      +|.|||.. .....|.++|+....-+.+ ...... .-.++++-  +|.||+.......  .|+..+.  +...=+.+..
T Consensus        90 ~g~ly~~d-~~~~~I~~~~~dG~~~~~l-~~~~~~-~P~giavdp~~g~ly~td~~~~~--~I~r~~~--dG~~~~~~~~  162 (318)
T 3sov_A           90 GEKLYWTD-SETNRIEVSNLDGSLRKVL-FWQELD-QPRAIALDPSSGFMYWTDWGEVP--KIERAGM--DGSSRFIIIN  162 (318)
T ss_dssp             TTEEEEEE-TTTTEEEEEETTSCSCEEE-ECSSCS-SEEEEEEEGGGTEEEEEECSSSC--EEEEEET--TSCSCEEEEC
T ss_pred             CCeEEEEE-CCCCEEEEEECCCCcEEEE-EeCCCC-CccEEEEeCCCCEEEEEecCCCC--EEEEEEc--CCCCeEEEEE
Confidence            68999984 4457899999886544433 211111 11234443  6889887632222  4555554  2122122211


Q ss_pred             echhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEcc
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~  329 (373)
                        ...          ..+..++.  .++.||+.+.....|..+|++
T Consensus       163 --~~l----------~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d  196 (318)
T 3sov_A          163 --SEI----------YWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  196 (318)
T ss_dssp             --SSC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             --CCC----------CCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence              110          01233333  488999999888889999987

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=87.52  E-value=14  Score=32.17  Aligned_cols=70  Identities=11%  Similarity=0.047  Sum_probs=35.9

Q ss_pred             CCE-EEEEEcCCceEEEEEECC-CCcEEecc-cCCCC-CCCceeEEE-ECCE-EEEEEeecCCceEEEEeecCCCCCCeE
Q 046684          208 RGM-LYWITSARAYSVIGFDIE-SNTWRELS-APMAD-RLEFATLVS-RNQK-LTLIGGTCGGDACVWELSEGGDDDIWC  281 (373)
Q Consensus       208 ~g~-ly~~gg~~~~~i~~yd~~-~~~w~~~~-~~~p~-~~~~~~~~~-~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~  281 (373)
                      +|+ +|+. ......|..||+. +++...+. ...+. ...-..++. -+|+ ||+.. .....+.+|+++.  ++.+..
T Consensus       155 dG~~l~~~-~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~-~~~~~v~v~~~~~--~~g~~~  230 (365)
T 1jof_A          155 TETYLYSA-DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM-EAGNRICEYVIDP--ATHMPV  230 (365)
T ss_dssp             TSSEEEEE-ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEEECT--TTCCEE
T ss_pred             CCCEEEEE-cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEE-CCCCeEEEEEEeC--CCCcEE
Confidence            464 5554 3335689999998 67665431 11121 111122222 2564 55543 3344578998875  345543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=87.44  E-value=13  Score=31.91  Aligned_cols=216  Identities=12%  Similarity=0.104  Sum_probs=99.9

Q ss_pred             CCCccccCCCCCCCCceeEEe-eCcEEEEeeCCCCceEEEEEcCcccceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCc
Q 046684           72 SDKWHVLSLDFLPYPVRPVSS-IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPN  149 (373)
Q Consensus        72 ~~~w~~~~~~~~~~~~~~~~~-~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~  149 (373)
                      ...|..+..+... ....+.. ..+.+++.|.   ...++.-.-.-++|+.+.... ...... ..+..++         
T Consensus        24 g~~W~~~~~~~~~-~~~~v~~~~~~~~~~~G~---~g~i~~s~DgG~tW~~~~~~~~~~~~~~-~~i~~~~---------   89 (327)
T 2xbg_A           24 YNPWEAIQLPTTA-TILDMSFIDRHHGWLVGV---NATLMETRDGGQTWEPRTLVLDHSDYRF-NSVSFQG---------   89 (327)
T ss_dssp             SCCEEEEECSCSS-CEEEEEESSSSCEEEEET---TTEEEEESSTTSSCEECCCCCSCCCCEE-EEEEEET---------
T ss_pred             CCCceEeecCCCC-cEEEEEECCCCcEEEEcC---CCeEEEeCCCCCCCeECCCCCCCCCccE-EEEEecC---------
Confidence            3568776533222 2222332 2455666554   234555444445798875321 211111 1222222         


Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCEEEEEEcCCceEEEEEECC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      .++|++|...           .++.-+-...+|+.+...+.   .+..   ...++ .-++.+|+.+.  ...++.-+=.
T Consensus        90 ~~~~~~g~~g-----------~i~~S~DgG~tW~~~~~~~~---~~~~---~~~i~~~~~~~~~~~~~--~g~v~~S~Dg  150 (327)
T 2xbg_A           90 NEGWIVGEPP-----------IMLHTTDGGQSWSQIPLDPK---LPGS---PRLIKALGNGSAEMITN--VGAIYRTKDS  150 (327)
T ss_dssp             TEEEEEEETT-----------EEEEESSTTSSCEECCCCTT---CSSC---EEEEEEEETTEEEEEET--TCCEEEESST
T ss_pred             CeEEEEECCC-----------eEEEECCCCCCceECccccC---CCCC---eEEEEEECCCCEEEEeC--CccEEEEcCC
Confidence            5678776321           23332222467998864310   0000   01222 34678888752  2334443323


Q ss_pred             CCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE
Q 046684          229 SNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA  307 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~  307 (373)
                      -++|+.+..+.+.  ....++.. ++.+++++. .+   .+|.-.+ +....|+.+........           .....
T Consensus       151 G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~g~-~G---~~~~S~d-~gG~tW~~~~~~~~~~~-----------~~~~~  212 (327)
T 2xbg_A          151 GKNWQALVQEAIG--VMRNLNRSPSGEYVAVSS-RG---SFYSTWE-PGQTAWEPHNRTTSRRL-----------HNMGF  212 (327)
T ss_dssp             TSSEEEEECSCCC--CEEEEEECTTSCEEEEET-TS---SEEEEEC-TTCSSCEEEECCSSSCE-----------EEEEE
T ss_pred             CCCCEEeecCCCc--ceEEEEEcCCCcEEEEEC-CC---cEEEEeC-CCCCceeECCCCCCCcc-----------ceeEE
Confidence            5689988433222  22233333 566666552 22   3565544 12578999854221111           12223


Q ss_pred             ecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684          308 AGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG  342 (373)
Q Consensus       308 ~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~  342 (373)
                      ..++.+|+.+.. +.++..+.+ ...  +|+.+..
T Consensus       213 ~~~g~~~~~~~~-G~~~~s~~D-~G~--tW~~~~~  243 (327)
T 2xbg_A          213 TPDGRLWMIVNG-GKIAFSDPD-NSE--NWGELLS  243 (327)
T ss_dssp             CTTSCEEEEETT-TEEEEEETT-EEE--EECCCBC
T ss_pred             CCCCCEEEEeCC-ceEEEecCC-CCC--eeEeccC
Confidence            346778876643 345555322 034  7887653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=87.43  E-value=14  Score=32.22  Aligned_cols=87  Identities=9%  Similarity=0.054  Sum_probs=48.6

Q ss_pred             CCEEEEEEeecC-------CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEE
Q 046684          252 NQKLTLIGGTCG-------GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMI  324 (373)
Q Consensus       252 ~g~l~~~gg~~~-------~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  324 (373)
                      ++++|+......       ....+|..+.    .+.+.+..++... ..         ...+...|..||+.++  +.+.
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~----~t~~~v~~i~~~~-p~---------~ia~spdg~~l~v~n~--~~v~  328 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDT----KTKQRVARIPGRD-AL---------SMTIDQQRNLMLTLDG--GNVN  328 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEET----TTTEEEEEEECTT-CC---------EEEEETTTTEEEEECS--SCEE
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEEC----CCCcEEEEEecCC-ee---------EEEECCCCCEEEEeCC--CeEE
Confidence            478888754111       1124554444    4457777776543 21         3444445677777664  7899


Q ss_pred             EEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684          325 IWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS  364 (373)
Q Consensus       325 ~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~  364 (373)
                      +||.+  +.  +-+.+......+..      ..++.+.|.
T Consensus       329 v~D~~--t~--~l~~~~~i~~~G~~------P~~~~~~p~  358 (361)
T 2oiz_A          329 VYDIS--QP--EPKLLRTIEGAAEA------SLQVQFHPV  358 (361)
T ss_dssp             EEECS--SS--SCEEEEEETTSCSS------EEEEEECCC
T ss_pred             EEECC--CC--cceeeEEeccCCCC------cEEEEecCC
Confidence            99999  54  22656554322332      345666663

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.29  E-value=1.6  Score=38.09  Aligned_cols=114  Identities=5%  Similarity=0.005  Sum_probs=57.6

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccc--eec-cC---CCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQ--FRY-LP---LLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA  166 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~--w~~-lp---~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~  166 (373)
                      .+|+||+...   ...++.+|..|++  |+. ..   ++-..+...        ...+     +.+|++....       
T Consensus         9 ~~~~V~v~t~---dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~--------~~~~-----~~~~vv~p~~-------   65 (339)
T 2be1_A            9 LSDILIAADV---EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPS--------RLET-----YETLIIEPFG-------   65 (339)
T ss_dssp             EEEEEEEEET---TSCEEEEETTTTEEEEEECGGGSCCSEECCCSC--------TTTS-----SEEEEECCST-------
T ss_pred             eCCEEEEEeC---CCeEEEEECCCCcEEEEecCCccCCcEEecCCc--------cccC-----CcEEEEEECC-------
Confidence            4667777666   4677888877775  653 22   111111000        0011     5566654211       


Q ss_pred             cccceEEEEECCCCceeeecCCCccccccceeccCCceEE-------ECCEEEEEEcCCceEEEEEECCCCc--EEe
Q 046684          167 TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-------TRGMLYWITSARAYSVIGFDIESNT--WRE  234 (373)
Q Consensus       167 ~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-------~~g~ly~~gg~~~~~i~~yd~~~~~--w~~  234 (373)
                        .-.++.|+..++.|+.-..+|.....++ .+.....++       .+|.+|+-  .....++++|..+++  |+.
T Consensus        66 --dG~l~a~~~~~G~~~~~~~~~~lv~~SP-~~~~~~pvv~~~~~~~~~g~Vy~G--s~~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           66 --DGNIYYFNAHQGLQKLPLSIRQLVSTSP-LHLKTNIVVNDSGKIVEDEKVYTG--SMRTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             --TTEEEEEETTTEEEEEEEEHHHHHTTCS-EEEECC----------CCEEEEEC--EEEEEEEEEETTTCCEEEEE
T ss_pred             --CCEEEEEECCCCcEEeeeccccceeccc-cccCCCceeecccccccCCEEEEE--ecCCEEEEEECCCCcEEEEE
Confidence              2367888887776653322221100000 111122233       56777765  467889999999875  554

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=87.12  E-value=19  Score=33.35  Aligned_cols=101  Identities=6%  Similarity=0.045  Sum_probs=49.8

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +|...+.+ .....|..||...+.-..+ ....  ..-..++. -++++++.++ .+..+.+|+.+.    ..-..+...
T Consensus       396 dg~~l~~~-~~d~~v~~~~~~~~~~~~~-~~~~--~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~----~~~~~~~~~  466 (577)
T 2ymu_A          396 DGQTIASA-SDDKTVKLWNRNGQLLQTL-TGHS--SSVWGVAFSPDDQTIASAS-DDKTVKLWNRNG----QLLQTLTGH  466 (577)
T ss_dssp             TSSCEEEE-ETTSEEEEECTTCCEEEEE-ECCS--SCEEEEEECTTSSEEEEEE-TTSEEEEEETTS----CEEEEEECC
T ss_pred             CCCEEEEE-eCCCEEEEEeCCCCEEEEe-cCCC--CCeEEEEECCCCCEEEEEc-CCCEEEEEECCC----CEEEEEcCC
Confidence            45555553 3456788888655443333 1111  11112222 2566555554 444578998643    222222111


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ....            ...++..++.+++.++..+.+.+||..
T Consensus       467 ~~~v------------~~~~~spd~~~las~~~d~~i~iw~~~  497 (577)
T 2ymu_A          467 SSSV------------RGVAFSPDGQTIASASDDKTVKLWNRN  497 (577)
T ss_dssp             SSCE------------EEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CCCE------------EEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence            1111            122333466777777777788889865

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=86.67  E-value=18  Score=32.85  Aligned_cols=188  Identities=12%  Similarity=0.103  Sum_probs=96.3

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceec--cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRY--LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~--lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ++.+|++.|    ++++.||..+++...  .|.++.    ..+++...          +++|.+-|..            
T Consensus       158 ~~~~yfFkG----~~yw~yd~~~~~~~~~~w~gi~~----iDAA~~~~----------g~~YfFkG~~------------  207 (460)
T 1qhu_A          158 DEGILFFQG----NRKWFWDLTTGTKKERSWPAVGN----CTSALRWL----------GRYYCFQGNQ------------  207 (460)
T ss_dssp             SSEEEEEET----TEEEEEETTTTEEEEECCTTSCC----CSEEEEET----------TEEEEEETTE------------
T ss_pred             CCeEEEEec----ccEEEEecccceeecccCCCCCc----cchheeeC----------CceEEEECCE------------
Confidence            677888887    578999998876432  122221    23333332          7889887653            


Q ss_pred             EEEEECCCCceeeecCCCcccc-----cc--------------------ceeccCCceEE--ECCEEEEEEcCCceEEEE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFA-----VR--------------------LTVWTPNESVC--TRGMLYWITSARAYSVIG  224 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~-----~~--------------------~~~~~~~~~~~--~~g~ly~~gg~~~~~i~~  224 (373)
                      .+.||..+++  .....|....     .+                    ..+.....++.  .+|++|++-|   ...+.
T Consensus       208 y~rfd~~~~~--v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg---~~yWR  282 (460)
T 1qhu_A          208 FLRFNPVSGE--VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG---SHYWR  282 (460)
T ss_dssp             EEEECTTTCC--CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET---TEEEE
T ss_pred             EEEEcCccCc--ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC---CEEEE
Confidence            6777775532  1222221100     00                    00011122233  3689999954   46677


Q ss_pred             EECCCCcEEe--ccc---CCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCC
Q 046684          225 FDIESNTWRE--LSA---PMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKA  299 (373)
Q Consensus       225 yd~~~~~w~~--~~~---~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~  299 (373)
                      +|...+.+..  +..   .+|...  -.+...++++|++-|.     ++|.++.  . ...+.+..-|......+. ...
T Consensus       283 ~~~~~~~~~p~~Is~~WpglP~~I--DAAf~~~~~~yfFkG~-----~yw~f~~--~-~g~~~~~GyPK~I~~~lG-lp~  351 (460)
T 1qhu_A          283 LDTNRDGWHSWPIAHQWPQGPSTV--DAAFSWEDKLYLIQDT-----KVYVFLT--K-GGYTLVNGYPKRLEKELG-SPP  351 (460)
T ss_dssp             CTTGGGCCCCEEGGGTCTTSCSSC--SEEEEETTEEEEEETT-----EEEEEEC--S-BSCEECTTCCEEHHHHHC-CCS
T ss_pred             EecCCCCcCccchhhhccCCCCCC--cEEEEECCeEEEEeCC-----EEEEEeC--C-CCceecCCCCeEHHHhcc-CCC
Confidence            7765433211  100   112221  2333458899998763     5787764  1 124444333444332221 100


Q ss_pred             C----CCceEEEe-cCCEEEEEEcCCccEEEEEcc
Q 046684          300 S----WGGTRCAA-GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       300 ~----~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .    ....++.. ..+++|++.|.  ..+.||..
T Consensus       352 ~~~~~~IDAA~~~~~~~ktyfFkG~--~ywryd~~  384 (460)
T 1qhu_A          352 VISLEAVDAAFVCPGSSRLHIMAGR--RLWWLDLK  384 (460)
T ss_dssp             SCCCSCCCEEECCTTCCEEEEEETT--EEEEEEGG
T ss_pred             ccccCcccEEEEeCCCCEEEEEECC--EEEEEECC
Confidence            1    01223322 46899999877  59999988

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=86.64  E-value=20  Score=33.17  Aligned_cols=101  Identities=7%  Similarity=0.034  Sum_probs=51.7

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      ++...+.+ .....+..||...+.-..+ ....  ..-..++. -++++++.++ .+..+.+|+.+.    +   .+..+
T Consensus       437 d~~~l~~~-~~d~~v~~w~~~~~~~~~~-~~~~--~~v~~~~~spd~~~las~~-~d~~i~iw~~~~----~---~~~~~  504 (577)
T 2ymu_A          437 DDQTIASA-SDDKTVKLWNRNGQLLQTL-TGHS--SSVRGVAFSPDGQTIASAS-DDKTVKLWNRNG----Q---LLQTL  504 (577)
T ss_dssp             TSSEEEEE-ETTSEEEEEETTSCEEEEE-ECCS--SCEEEEEECTTSCEEEEEE-TTSEEEEEETTS----C---EEEEE
T ss_pred             CCCEEEEE-cCCCEEEEEECCCCEEEEE-cCCC--CCEEEEEEcCCCCEEEEEe-CCCEEEEEcCCC----C---EEEEE
Confidence            45555553 3456788888766554444 1111  11112222 2667666554 444578998532    2   22222


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ..-.         ......++..++.+++.++..+.+.+||..
T Consensus       505 ~~h~---------~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          505 TGHS---------SSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             ECCS---------SCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             eCCC---------CCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            2100         000123333466667777777789999976

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=86.49  E-value=1  Score=43.81  Aligned_cols=106  Identities=8%  Similarity=-0.099  Sum_probs=56.6

Q ss_pred             ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      .++.|||.. .....|.++|+....-..+ ....... -.++++  .+|.||+.......  .|+..+.  +...-+.+.
T Consensus       463 ~~g~LY~tD-~~~~~I~v~d~dg~~~~~l-~~~~~~~-P~giavDp~~g~ly~td~~~~~--~I~~~~~--dG~~~~~l~  535 (699)
T 1n7d_A          463 IHSNIYWTD-SVLGTVSVADTKGVKRKTL-FREQGSK-PRAIVVDPVHGFMYWTDWGTPA--KIKKGGL--NGVDIYSLV  535 (699)
T ss_dssp             SSSBCEECC-TTTSCEEEEBSSSCCEEEE-CCCSSCC-CCCEECCSSSSCCEECCCSSSC--CEEBCCS--SSCCCCEES
T ss_pred             eCCcEEEEe-ccCCeEEEEecCCCceEEE-EeCCCCC-cceEEEccCCCcEEEcccCCCC--eEEEEeC--CCCCeeEEE
Confidence            468999983 4457799999987665544 2211111 123333  36788876532212  3554443  112111111


Q ss_pred             eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .  .. +.       ...+.++...++.||+.......|.++|++
T Consensus       536 ~--~~-l~-------~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          536 T--EN-IQ-------WPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             C--SS-CS-------SCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             e--CC-CC-------CccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            1  00 00       000233333578999999888889999997

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=86.22  E-value=24  Score=33.62  Aligned_cols=191  Identities=6%  Similarity=-0.034  Sum_probs=98.7

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccc-eeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccc
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQ-FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES  170 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~-w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~  170 (373)
                      ..++.||+..-.  ...+..+++.... +..+-.  .....+.-.+++- .+       ++||+....          ..
T Consensus        49 ~~~~~ly~sD~~--~~~I~r~~~~g~~~~~~v~~--~~~~~P~GlAvD~-~~-------~~ly~~d~~----------~~  106 (619)
T 3s94_A           49 FSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDW-LG-------EKLYWTDSE----------TN  106 (619)
T ss_dssp             TTTTEEEEEETT--TTEEEEEEC-----CEEEEC--SSCSCEEEEEEET-TT-------TEEEEEETT----------TT
T ss_pred             eCCCEEEEEECC--CCeEEEEEccCCCceEEEEe--CCCCCcCeEEEEe-cC-------CEEEEEeCC----------CC
Confidence            348899987653  4678888876542 222111  1111222223331 11       778887532          25


Q ss_pred             eEEEEECCCCceeeecCCCccccccceeccCCceEE--ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE
Q 046684          171 MVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC--TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL  248 (373)
Q Consensus       171 ~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~  248 (373)
                      .+++++.....=+.+..-.        .......++  .+|.|||........|...++....-..+ ..... ..-.++
T Consensus       107 ~I~v~~~dG~~~~~l~~~~--------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l-~~~~~-~~P~Gl  176 (619)
T 3s94_A          107 RIEVSNLDGSLRKVLFWQE--------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-INSEI-YWPNGL  176 (619)
T ss_dssp             EEEEEETTSCSCEEEECSS--------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-ECSSC-SSEEEE
T ss_pred             EEEEEECCCCCEEEEEeCC--------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE-EeCCC-CCCcEE
Confidence            7888988654322332110        011223344  25899998533357899999886554444 22111 111234


Q ss_pred             EEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEE
Q 046684          249 VSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIW  326 (373)
Q Consensus       249 ~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~y  326 (373)
                      +.-  +++||++.... .  .|+..+.. .......+.    ....         .+.++...++.||+.+.....|...
T Consensus       177 ald~~~~~LY~aD~~~-~--~I~~~~~d-G~~~~~~~~----~~~~---------~P~gi~~~~~~ly~td~~~~~V~~~  239 (619)
T 3s94_A          177 TLDYEEQKLYWADAKL-N--FIHKSNLD-GTNRQAVVK----GSLP---------HPFALTLFEDILYWTDWSTHSILAC  239 (619)
T ss_dssp             EEETTTTEEEEEETTT-C--CEEEESSS-CCEEC----------------------CCCEEESSSEEEEECTTTCSEEEE
T ss_pred             EEEccCCEEEEEeCCC-C--eEEEecCC-CCccEEEEe----CCCC---------CceEEEEeCCEEEEecCCCCEEEEE
Confidence            443  68999986432 2  34544431 112222211    1111         1466677788999998888889999


Q ss_pred             EccccCC
Q 046684          327 REDEDKR  333 (373)
Q Consensus       327 d~~~~~~  333 (373)
                      |..  ++
T Consensus       240 d~~--tg  244 (619)
T 3s94_A          240 NKY--TG  244 (619)
T ss_dssp             ESS--SC
T ss_pred             ECC--CC
Confidence            997  65

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=86.07  E-value=19  Score=32.40  Aligned_cols=105  Identities=10%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCE-EEEEEeecCC-ceEEEEeecCCCCCCeEEEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQK-LTLIGGTCGG-DACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~-l~~~gg~~~~-~~~i~~~~~~~~~~~W~~v~  284 (373)
                      +|.||+....  ..|..+|+++++...+ .+ ... .-.+++. .+|. ||+.....+. ...++.+..   ...|....
T Consensus       149 ~g~Lyv~d~~--~~I~~id~~~~~v~~~-~~-~~~-~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~---~g~~~~~~  220 (430)
T 3tc9_A          149 HNHLYLVGEQ--HPTRLIDFEKEYVSTV-YS-GLS-KVRTICWTHEADSMIITNDQNNNDRPNNYILTR---ESGFKVIT  220 (430)
T ss_dssp             EEEEEEEEBT--EEEEEEETTTTEEEEE-EC-CCS-CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG---GGTSCSEE
T ss_pred             CCeEEEEeCC--CcEEEEECCCCEEEEE-ec-CCC-CcceEEEeCCCCEEEEEeCCCCcccceEEEEeC---CCceeeee
Confidence            4889998532  8899999999888777 33 111 1123333 2454 8888753322 122333332   13343222


Q ss_pred             eechhhhhhhcCCCCCCCceEE-Eec-CCEEEEEEcCCccEEEEEccccCC
Q 046684          285 KVPIEMGMRLSGGKASWGGTRC-AAG-NGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .++.  +..         +..+ +.. ++.||+.....+.++.||++  +.
T Consensus       221 ~l~~--~~~---------p~giavdp~~g~lyv~d~~~~~V~~~~~~--~~  258 (430)
T 3tc9_A          221 ELTK--GQN---------CNGAETHPINGELYFNSWNAGQVFRYDFT--TQ  258 (430)
T ss_dssp             EEEE--CSS---------CCCEEECTTTCCEEEEETTTTEEEEEETT--TT
T ss_pred             eecc--CCC---------ceEEEEeCCCCEEEEEECCCCEEEEEECC--CC
Confidence            2221  100         2222 333 78999998777889999998  77

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=85.99  E-value=24  Score=33.58  Aligned_cols=213  Identities=8%  Similarity=-0.011  Sum_probs=115.7

Q ss_pred             eeEEEEeCCCCCccc-cCCCCCCCCceeEE--eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEc
Q 046684           63 LCCYVHNPVSDKWHV-LSLDFLPYPVRPVS--SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVME  139 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~--~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~  139 (373)
                      ..+...|.....-.. ++...+.. ...++  ..++.||.....  ...+..+++.......+-.... .....+++-..
T Consensus        15 ~~I~~i~l~~~~~~~~~~~~~~~~-~~~l~~d~~~~~lywtD~~--~~~I~r~~~~g~~~~~v~~~g~-~~P~GlAvD~~   90 (628)
T 4a0p_A           15 ADIRRISLETNNNNVAIPLTGVKE-ASALDFDVTDNRIYWTDIS--LKTISRAFMNGSALEHVVEFGL-DYPEGMAVDWL   90 (628)
T ss_dssp             TEEEEEESSCTTCEEECCCCSCSC-EEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSC-SCCCEEEEETT
T ss_pred             CcEEEEECCCCCcceEEEcCCCCc-eEEEEEECCCCEEEEEECC--CCeEEEEECCCCCcEEEEeCCC-CCcceEEEEeC
Confidence            456667776543222 22222222 22233  347899998753  4678888887655444322111 11123333211


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeec--CCCccccccceeccCCceEEE--CCEEEEEE
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIG--SMPVEFAVRLTVWTPNESVCT--RGMLYWIT  215 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~~~~~~~~~~~~~~~~~--~g~ly~~g  215 (373)
                      .         ++||+.-..          ...+++++.....=+.+.  .+.          .....++-  +|.|||.-
T Consensus        91 ~---------~~LY~tD~~----------~~~I~v~~~dG~~~~~l~~~~l~----------~P~~iavdp~~G~lY~tD  141 (628)
T 4a0p_A           91 G---------KNLYWADTG----------TNRIEVSKLDGQHRQVLVWKDLD----------SPRALALDPAEGFMYWTE  141 (628)
T ss_dssp             T---------TEEEEEETT----------TTEEEEEETTSTTCEEEECSSCC----------CEEEEEEETTTTEEEEEE
T ss_pred             C---------CEEEEEECC----------CCEEEEEecCCCcEEEEEeCCCC----------CcccEEEccCCCeEEEeC
Confidence            1         789887432          257889988654322222  121          11233443  58999985


Q ss_pred             cCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhh
Q 046684          216 SARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMR  293 (373)
Q Consensus       216 g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~  293 (373)
                      ......|..+++....-+.+ ..  .-..-.+++.-  +++||++.... ..+...+++.   ... +.+...    .  
T Consensus       142 ~g~~~~I~r~~~dG~~~~~l-~~--~~~~P~GlalD~~~~~LY~aD~~~-~~I~~~d~dG---~~~-~v~~~~----l--  207 (628)
T 4a0p_A          142 WGGKPKIDRAAMDGSERTTL-VP--NVGRANGLTIDYAKRRLYWTDLDT-NLIESSNMLG---LNR-EVIADD----L--  207 (628)
T ss_dssp             CSSSCEEEEEETTSCSCEEE-EC--SCSSEEEEEEETTTTEEEEEETTT-TEEEEEETTS---CSC-EEEEEC----C--
T ss_pred             CCCCCEEEEEeCCCCceEEE-EC--CCCCcceEEEccccCEEEEEECCC-CEEEEEcCCC---Cce-EEeecc----C--
Confidence            33367899999987665555 22  11111234433  68999987432 2344555432   222 332210    1  


Q ss_pred             hcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          294 LSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                             ..+.+++..++.||+.+...+.|...|..
T Consensus       208 -------~~P~glav~~~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          208 -------PHPFGLTQYQDYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             -------SCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             -------CCceEEEEECCEEEEecCCCCEEEEEECC
Confidence                   11577777889999999877889999976

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=85.50  E-value=8.6  Score=34.06  Aligned_cols=58  Identities=22%  Similarity=0.281  Sum_probs=40.2

Q ss_pred             eEEECCEEEEEE-c---CC-ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEee
Q 046684          204 SVCTRGMLYWIT-S---AR-AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGT  261 (373)
Q Consensus       204 ~~~~~g~ly~~g-g---~~-~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~  261 (373)
                      +-+++|.||+.. |   .. ...+..=+...+.|+.+..|...+....-.+..++.||++|..
T Consensus       344 vkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsE  406 (670)
T 3ju4_A          344 IKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE  406 (670)
T ss_dssp             EEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEEC
T ss_pred             hhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEecc
Confidence            456899999997 2   12 2355566666788998855544444555577889999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=85.47  E-value=15  Score=30.78  Aligned_cols=33  Identities=9%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684          252 NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI  288 (373)
Q Consensus       252 ~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~  288 (373)
                      ++++++.++ .+..+.+|+++.   .+.|..+..+..
T Consensus       317 ~~~~l~s~~-~dg~v~iw~~~~---~~~~~~~~~~~~  349 (351)
T 3f3f_A          317 TGTILSSAG-DDGKVRLWKATY---SNEFKCMSVITA  349 (351)
T ss_dssp             SSCCEEEEE-TTSCEEEEEECT---TSCEEEEEEEC-
T ss_pred             CCCEEEEec-CCCcEEEEecCc---Ccchhheeehcc
Confidence            466555554 444589999975   467888877653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=85.42  E-value=19  Score=31.86  Aligned_cols=26  Identities=8%  Similarity=0.271  Sum_probs=19.5

Q ss_pred             EEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          306 CAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       306 ~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +...++..++.++..+.+.+||.+  ++
T Consensus       349 ~~s~~~~~l~s~s~dg~v~iwd~~--~~  374 (447)
T 3dw8_B          349 CWNGSDSVVMTGSYNNFFRMFDRN--TK  374 (447)
T ss_dssp             EECTTSSEEEEECSTTEEEEEETT--TC
T ss_pred             EECCCCCEEEEeccCCEEEEEEcC--CC
Confidence            344455556778888889999999  77

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=85.13  E-value=16  Score=30.73  Aligned_cols=195  Identities=9%  Similarity=0.043  Sum_probs=93.6

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      ++.||+.+..  ...++.+++ +++.+.+...   ... ...+..++   +     +++|+....          ...+.
T Consensus        56 g~~l~~~d~~--~~~i~~~~~-~g~~~~~~~~---~~~-~~gl~~d~---d-----G~l~v~~~~----------~~~v~  110 (305)
T 3dr2_A           56 QRTLVWSDLV--GRRVLGWRE-DGTVDVLLDA---TAF-TNGNAVDA---Q-----QRLVHCEHG----------RRAIT  110 (305)
T ss_dssp             GTEEEEEETT--TTEEEEEET-TSCEEEEEES---CSC-EEEEEECT---T-----SCEEEEETT----------TTEEE
T ss_pred             CCEEEEEECC--CCEEEEEeC-CCCEEEEeCC---CCc-cceeeECC---C-----CCEEEEECC----------CCEEE
Confidence            3446665543  456888888 4544333211   111 12222221   1     667775422          13578


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEE----EcC------------CceEEEEEECCCCcEEecc
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWI----TSA------------RAYSVIGFDIESNTWRELS  236 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~----gg~------------~~~~i~~yd~~~~~w~~~~  236 (373)
                      +|+.. ++.+.+......    ........+++ -+|.+|+.    |..            ....|+.||+++++...+ 
T Consensus       111 ~~~~~-g~~~~~~~~~~~----~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-  184 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAG----KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-  184 (305)
T ss_dssp             EECTT-SCEEEEECEETT----EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-
T ss_pred             EECCC-CCEEEEEeccCC----CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-
Confidence            88875 666555332110    00011112222 26888884    211            136799999998888776 


Q ss_pred             cCCCCCCCceeEEEE-CCE-EEEEEeec----CCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecC
Q 046684          237 APMADRLEFATLVSR-NQK-LTLIGGTC----GGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGN  310 (373)
Q Consensus       237 ~~~p~~~~~~~~~~~-~g~-l~~~gg~~----~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~  310 (373)
                      .  .... -.+++.. +|+ ||+.....    ...+.+|+++.    +...........  ....+      ...++..+
T Consensus       185 ~--~~~~-p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~----~~l~~~~~~~~~--~~~~p------dgi~~d~~  249 (305)
T 3dr2_A          185 A--DLDH-PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD----GALHDRRHFASV--PDGLP------DGFCVDRG  249 (305)
T ss_dssp             E--EESS-EEEEEECTTSSEEEEEECCC---CCCEEEEEEEET----TEEEEEEEEECC--SSSCC------CSEEECTT
T ss_pred             e--cCCC-CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC----CCccCCeEEEEC--CCCCC------CeEEECCC
Confidence            2  1111 1233333 454 77765432    13366666654    322221111100  00000      12334446


Q ss_pred             CEEEEEEcCCccEEEEEccccCCcccEEEe
Q 046684          311 GAICLYREVGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       311 ~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      +.||+..  ...|.+||++  .+  .-..+
T Consensus       250 G~lwv~~--~~gv~~~~~~--g~--~~~~~  273 (305)
T 3dr2_A          250 GWLWSSS--GTGVCVFDSD--GQ--LLGHI  273 (305)
T ss_dssp             SCEEECC--SSEEEEECTT--SC--EEEEE
T ss_pred             CCEEEec--CCcEEEECCC--CC--EEEEE
Confidence            6788765  3369999998  66  44444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=85.00  E-value=18  Score=31.24  Aligned_cols=118  Identities=8%  Similarity=-0.065  Sum_probs=56.5

Q ss_pred             CCEEEEEEcCCceE-EEEEECCCCcEEecccCCCCCCCce-eEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          208 RGMLYWITSARAYS-VIGFDIESNTWRELSAPMADRLEFA-TLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       208 ~g~ly~~gg~~~~~-i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      +|.+.+.++ .... |..+|+.+.+-... .....+.... .++.. +|++++.++ .+..+.+|++.. +...++..+.
T Consensus       206 ~g~~l~s~s-~d~~~v~iwd~~~~~~~~~-~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v~iw~~~~-~~~~~~~~~~  281 (355)
T 3vu4_A          206 KSDMVATCS-QDGTIIRVFKTEDGVLVRE-FRRGLDRADVVDMKWSTDGSKLAVVS-DKWTLHVFEIFN-DQDNKRHALK  281 (355)
T ss_dssp             TSSEEEEEE-TTCSEEEEEETTTCCEEEE-EECTTCCSCEEEEEECTTSCEEEEEE-TTCEEEEEESSC-CSCCCSEETT
T ss_pred             CCCEEEEEe-CCCCEEEEEECCCCcEEEE-EEcCCCCCcEEEEEECCCCCEEEEEE-CCCEEEEEEccC-CCCccccccc
Confidence            466555543 4454 89999987654332 1111011112 22222 566655554 445589999976 1223333321


Q ss_pred             e--echhh---h----hhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          285 K--VPIEM---G----MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       285 ~--~p~~~---~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .  ++.-.   .    ..+...........+...+|..++++..++.+..|+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          282 GWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             TTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             ceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            1  00000   0    00000000001233444567777777777788888876

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=84.32  E-value=32  Score=33.46  Aligned_cols=189  Identities=8%  Similarity=0.058  Sum_probs=98.3

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      -.+|.|++...    .-+.+||+.++++.. +..... .... .+...    +     +.|++..  .          ..
T Consensus        71 d~~g~lWigT~----~Gl~~yd~~~~~f~~-~~~~~~-~~i~-~i~~~----~-----g~lWigt--~----------~G  122 (758)
T 3ott_A           71 IDNTYLYMGTD----NGILVYNYRADRYEQ-PETDFP-TDVR-TMALQ----G-----DTLWLGA--L----------NG  122 (758)
T ss_dssp             ETTTEEEEEET----TEEEEEETTTTEECC-CSCCCC-SCEE-EEEEE----T-----TEEEEEE--T----------TE
T ss_pred             cCCCcEEEEeC----CCeEEEeCCCCEEEC-cccCCC-ceEE-EEEec----C-----CcEEEEc--C----------Cc
Confidence            44788888664    458899999988765 211111 1111 12221    1     6677642  1          25


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCC---ce
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLE---FA  246 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~---~~  246 (373)
                      +..||..+++.+.....+.     ............  +|.+++.. .  ..+..||+.++++..+..+......   -.
T Consensus       123 l~~~~~~~~~~~~~~~~~~-----~l~~~~i~~i~~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~  194 (758)
T 3ott_A          123 LYTYQLQSRKLTSFDTRRN-----GLPNNTIYSIIRTKDNQIYVGT-Y--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVN  194 (758)
T ss_dssp             EEEEETTTCCEEEECHHHH-----CCSCSCEEEEEECTTCCEEEEE-T--TEEEEEETTTTEEEEECCCCCTTCSSCCEE
T ss_pred             ceeEeCCCCeEEEeccCCC-----CcCCCeEEEEEEcCCCCEEEEe-C--CCHhhCccCCCceEEecCCCccccccceeE
Confidence            8899998888776521100     000011111223  46776642 2  4789999999988766222211111   12


Q ss_pred             eEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEE
Q 046684          247 TLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMI  324 (373)
Q Consensus       247 ~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  324 (373)
                      .+..- ++ .|++.. ..  .+..+++    .+.++.....++....           ...+...++.|++..  ...+.
T Consensus       195 ~i~~d~~~~~lWigt-~~--Gl~~~~~----~~~~~~~~~~l~~~~i-----------~~i~~d~~g~lWigT--~~Gl~  254 (758)
T 3ott_A          195 SLLEDTTRQCVWIGT-EG--YLFQYFP----STGQIKQTEAFHNNSI-----------KSLALDGNGDLLAGT--DNGLY  254 (758)
T ss_dssp             EEEEETTTTEEEEEE-EE--EEEEEET----TTTEEEEEEEEEEEEE-----------EEEEECTTCCEEEEE--TTEEE
T ss_pred             EEEEECCCCEEEEEE-CC--CCeEEcC----CCCeEEeccCCCCCeE-----------EEEEEcCCCCEEEEe--CCcee
Confidence            23333 23 466643 22  2344444    4466766554432211           122233467788754  24688


Q ss_pred             EEEccccCCcccEEEe
Q 046684          325 IWREDEDKRKWEWVWV  340 (373)
Q Consensus       325 ~yd~~~~~~~~~W~~~  340 (373)
                      .||++  ++  +++.+
T Consensus       255 ~~~~~--~~--~~~~~  266 (758)
T 3ott_A          255 VYHND--TT--PLQHI  266 (758)
T ss_dssp             EECCT--TS--CCEEE
T ss_pred             EEecC--CC--cEEEE
Confidence            99998  87  66554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=83.99  E-value=30  Score=32.90  Aligned_cols=190  Identities=7%  Similarity=-0.037  Sum_probs=103.4

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      .+|.||+....  ...+..+++.......+-.... ....++++-...         ++||+.-..          ...+
T Consensus       359 ~~~~ly~sD~~--~~~I~r~~~~g~~~~~v~~~~~-~~p~GlAvD~~~---------~~lY~tD~~----------~~~I  416 (619)
T 3s94_A          359 VEGYIYWTDDE--VRAIRRSFIDGSGSQFVVTAQI-AHPDGIAVDWVA---------RNLYWTDTG----------TDRI  416 (619)
T ss_dssp             TTTEEEEEETT--TTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTT---------TEEEEEETT----------TTEE
T ss_pred             CCCeEEEEeCC--CCeEEEEEcCCCccEEEEECCC-CCcCceEEeccc---------CcEEEEeCC----------CCcE
Confidence            47899997753  4678888887755544322111 111233332111         778887422          2468


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS  250 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~  250 (373)
                      ++.+.....-+.+..-.        .......++.  +|.|||........|...++....-..+ ..-... .-.+++.
T Consensus       417 ~v~~~~G~~~~~l~~~~--------l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l-~~~~l~-~P~Glal  486 (619)
T 3s94_A          417 EVTRLNGTMRKILISED--------LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL-VNTSLG-WPNGLAL  486 (619)
T ss_dssp             EEEETTSCSCEEEECTT--------CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-ECSSCS-CEEEEEE
T ss_pred             EEEeCCCCeEEEEEECC--------CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE-EeCCCC-CCeeeEE
Confidence            88888665433332110        0011223443  5999999533357899998875443333 111111 1123444


Q ss_pred             E--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEc
Q 046684          251 R--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRE  328 (373)
Q Consensus       251 ~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~  328 (373)
                      -  +++||++.... ..++..+++-  . .. +.+..   ...         ..+..++..++.||+.+.....|...|.
T Consensus       487 D~~~~~LY~aD~~~-~~I~~~~~dG--~-~~-~~~~~---~~l---------~~P~glav~~~~ly~tD~~~~~I~~~~k  549 (619)
T 3s94_A          487 DYDEGKIYWGDAKT-DKIEVMNTDG--T-GR-RVLVE---DKI---------PHIFGFTLLGDYVYWTDWQRRSIERVHK  549 (619)
T ss_dssp             ETTTTEEEEEETTT-TEEEEEESSS--C-CC-EEEEE---CCC---------CSSCCEEEETTEEEEECTTSSCEEEEES
T ss_pred             cccCCEEEEEECCC-CEEEEEecCC--C-ce-EEEec---cCC---------CCcEEEEEECCEEEEeecCCCeEEEEEc
Confidence            3  68999986432 2345555532  1 22 22211   001         1156677788999999988888999998


Q ss_pred             cccCC
Q 046684          329 DEDKR  333 (373)
Q Consensus       329 ~~~~~  333 (373)
                      .  ++
T Consensus       550 ~--~g  552 (619)
T 3s94_A          550 R--SA  552 (619)
T ss_dssp             S--SC
T ss_pred             C--CC
Confidence            8  76

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=83.77  E-value=29  Score=32.64  Aligned_cols=151  Identities=9%  Similarity=0.013  Sum_probs=72.7

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceec-cCC--CCC-CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRY-LPL--LNV-SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT  167 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~--~~~-~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~  167 (373)
                      +.+|.+++.++.  ...+.+||..+++... +..  +.. .....-..+...+        +++.++.++.+        
T Consensus       199 spdg~~las~s~--D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--------dg~~l~s~s~D--------  260 (611)
T 1nr0_A          199 NPDGSLFASTGG--DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--------DGTKIASASAD--------  260 (611)
T ss_dssp             CTTSSEEEEEET--TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--------TSSEEEEEETT--------
T ss_pred             CCCCCEEEEEEC--CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--------CCCEEEEEeCC--------
Confidence            335555554443  4678999988876533 211  100 1111111222221        15556666554        


Q ss_pred             ccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684          168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT  247 (373)
Q Consensus       168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~  247 (373)
                        ..+.++|..+++....-.....      .......+..++...+.+ .....+..+|+.+.+-...   +..+.....
T Consensus       261 --~~v~lWd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~s~-s~d~~i~~~~~~~~~~~~~---~~gh~~~v~  328 (611)
T 1nr0_A          261 --KTIKIWNVATLKVEKTIPVGTR------IEDQQLGIIWTKQALVSI-SANGFINFVNPELGSIDQV---RYGHNKAIT  328 (611)
T ss_dssp             --SEEEEEETTTTEEEEEEECCSS------GGGCEEEEEECSSCEEEE-ETTCCEEEEETTTTEEEEE---ECCCSSCEE
T ss_pred             --CeEEEEeCCCCceeeeecCCCC------ccceeEEEEEcCCEEEEE-eCCCcEEEEeCCCCCcceE---EcCCCCCEE
Confidence              4689999988765432222100      001111223355444443 3456678888887653322   111222222


Q ss_pred             -EEE-ECCEEEEEEeecCCceEEEEeec
Q 046684          248 -LVS-RNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       248 -~~~-~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                       ++. -+|+..+.++. +..+.+|++..
T Consensus       329 ~l~~spdg~~l~s~s~-D~~v~~Wd~~~  355 (611)
T 1nr0_A          329 ALSSSADGKTLFSADA-EGHINSWDIST  355 (611)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETTT
T ss_pred             EEEEeCCCCEEEEEeC-CCcEEEEECCC
Confidence             222 25666555544 44579999865

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=83.61  E-value=26  Score=31.89  Aligned_cols=53  Identities=8%  Similarity=-0.143  Sum_probs=32.8

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCccccee
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFR  120 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~  120 (373)
                      ..++.||..+++......+.++.... +...+|.+|++.|    ..++.||+.+++-.
T Consensus       167 ~~yw~yd~~~~~~~~~~w~gi~~iDA-A~~~~g~~YfFkG----~~y~rfd~~~~~v~  219 (460)
T 1qhu_A          167 NRKWFWDLTTGTKKERSWPAVGNCTS-ALRWLGRYYCFQG----NQFLRFNPVSGEVP  219 (460)
T ss_dssp             TEEEEEETTTTEEEEECCTTSCCCSE-EEEETTEEEEEET----TEEEEECTTTCCCC
T ss_pred             ccEEEEecccceeecccCCCCCccch-heeeCCceEEEEC----CEEEEEcCccCccc
Confidence            46678998766433222222333222 3334688999988    68899999876543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=83.32  E-value=21  Score=30.60  Aligned_cols=94  Identities=7%  Similarity=0.108  Sum_probs=49.2

Q ss_pred             CCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEE
Q 046684          179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTL  257 (373)
Q Consensus       179 ~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~  257 (373)
                      ..+|+.+.....     ........+++.++.+|++|.  ...++.-+=.-++|+.+..+.+.+.....++. -++.+++
T Consensus        65 G~tW~~~~~~~~-----~~~~~~~~i~~~~~~~~~~g~--~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~  137 (327)
T 2xbg_A           65 GQTWEPRTLVLD-----HSDYRFNSVSFQGNEGWIVGE--PPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEM  137 (327)
T ss_dssp             TSSCEECCCCCS-----CCCCEEEEEEEETTEEEEEEE--TTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEE
T ss_pred             CCCCeECCCCCC-----CCCccEEEEEecCCeEEEEEC--CCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEE
Confidence            457998854210     001111233445678888752  23444422235689998432222112233433 4678887


Q ss_pred             EEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          258 IGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       258 ~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      ++. .+   .+|.-.+  ...+|+.+..
T Consensus       138 ~~~-~g---~v~~S~D--gG~tW~~~~~  159 (327)
T 2xbg_A          138 ITN-VG---AIYRTKD--SGKNWQALVQ  159 (327)
T ss_dssp             EET-TC---CEEEESS--TTSSEEEEEC
T ss_pred             EeC-Cc---cEEEEcC--CCCCCEEeec
Confidence            763 21   4777665  5678999865

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=82.90  E-value=21  Score=30.40  Aligned_cols=140  Identities=6%  Similarity=-0.061  Sum_probs=73.5

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCce-EEECCEEEEEEcCCceEEEEEECC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNES-VCTRGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~-~~~~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      ..+|.++...          ..+++||..+++.+... .+.         ..... ..-+|.+++..   ...+..||++
T Consensus        61 ~~l~~~d~~~----------~~i~~~d~~~~~~~~~~-~~~---------~v~~i~~~~dg~l~v~~---~~gl~~~d~~  117 (326)
T 2ghs_A           61 GTAWWFNILE----------RELHELHLASGRKTVHA-LPF---------MGSALAKISDSKQLIAS---DDGLFLRDTA  117 (326)
T ss_dssp             TEEEEEEGGG----------TEEEEEETTTTEEEEEE-CSS---------CEEEEEEEETTEEEEEE---TTEEEEEETT
T ss_pred             CEEEEEECCC----------CEEEEEECCCCcEEEEE-CCC---------cceEEEEeCCCeEEEEE---CCCEEEEECC
Confidence            5677765332          46889999887655432 211         00111 23468877763   3469999999


Q ss_pred             CCcEEecccCCCCCC--Cce-eE-EEECCEEEEEEeecC---CceEEEEeecCCCCCCeEEEEe-echhhhhhhcCCCCC
Q 046684          229 SNTWRELSAPMADRL--EFA-TL-VSRNQKLTLIGGTCG---GDACVWELSEGGDDDIWCLIEK-VPIEMGMRLSGGKAS  300 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~--~~~-~~-~~~~g~l~~~gg~~~---~~~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~~~~~  300 (373)
                      +++...+ ...+...  ... .+ +.-+|++|+......   ....+|.++.    .+...+.. .....          
T Consensus       118 ~g~~~~~-~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~----g~~~~~~~~~~~~~----------  182 (326)
T 2ghs_A          118 TGVLTLH-AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK----GKVTKLFADISIPN----------  182 (326)
T ss_dssp             TCCEEEE-ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET----TEEEEEEEEESSEE----------
T ss_pred             CCcEEEE-eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC----CcEEEeeCCCcccC----------
Confidence            9988766 3322211  111 22 223678877543211   1246777753    44443321 11100          


Q ss_pred             CCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          301 WGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       301 ~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                        .......+..+|+.+.....+++||.+
T Consensus       183 --~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          183 --SICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             --EEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             --CeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence              112222345688877666678888863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=82.46  E-value=30  Score=34.60  Aligned_cols=23  Identities=9%  Similarity=0.215  Sum_probs=19.0

Q ss_pred             cCCEEEEEEcCCccEEEEEccccCC
Q 046684          309 GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .++..++.++.++.+.+||.+  ++
T Consensus       221 pdg~~lasgs~Dg~i~lWd~~--~g  243 (902)
T 2oaj_A          221 PNSLHIITIHEDNSLVFWDAN--SG  243 (902)
T ss_dssp             TTSSEEEEEETTCCEEEEETT--TC
T ss_pred             CCCCEEEEEECCCeEEEEECC--CC
Confidence            367778888888889999998  77

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=82.09  E-value=23  Score=30.25  Aligned_cols=21  Identities=5%  Similarity=-0.170  Sum_probs=16.0

Q ss_pred             cCCEEEEEEcCCccEEEEEcc
Q 046684          309 GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .++..++.++..+.+.+||.+
T Consensus       319 p~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          319 ALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             SSSCCEEEEETTSEEEEEEEE
T ss_pred             CCCCeEEEecCCceEEEEEEE
Confidence            356666777777789999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=82.00  E-value=16  Score=32.43  Aligned_cols=70  Identities=14%  Similarity=0.131  Sum_probs=37.3

Q ss_pred             CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec-CC-EEEEEEcCCccEEEEEcc
Q 046684          252 NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG-NG-AICLYREVGLGMIIWRED  329 (373)
Q Consensus       252 ~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~~~~~~~~~~yd~~  329 (373)
                      ++++++.+  .+..+.+|+++.  .......+...+... .....     ....+... ++ .+++.++..+.+.+||++
T Consensus       188 ~~~~l~s~--~d~~i~iwd~~~--~~~~~~~~~~~~~~~-~~~~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  257 (447)
T 3dw8_B          188 DYETYLSA--DDLRINLWHLEI--TDRSFNIVDIKPANM-EELTE-----VITAAEFHPNSCNTFVYSSSKGTIRLCDMR  257 (447)
T ss_dssp             TSSEEEEE--CSSEEEEEETTE--EEEEEEEEECCCSSG-GGCCC-----CEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCEEEEe--CCCeEEEEECCC--CCceeeeeecccccc-cccCc-----ceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence            56666654  455689999863  112233222112111 11000     01222222 34 788888888889999999


Q ss_pred             ccCC
Q 046684          330 EDKR  333 (373)
Q Consensus       330 ~~~~  333 (373)
                        ++
T Consensus       258 --~~  259 (447)
T 3dw8_B          258 --AS  259 (447)
T ss_dssp             --TC
T ss_pred             --CC
Confidence              77

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=81.51  E-value=0.41  Score=42.45  Aligned_cols=69  Identities=10%  Similarity=0.060  Sum_probs=32.4

Q ss_pred             eEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeE
Q 046684          204 SVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWC  281 (373)
Q Consensus       204 ~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~  281 (373)
                      .++.++.+|+.+  ....+.++|.+++  .|+.- .  . . .....+..+|.+++.+. .+..+..|+.++  .+..|+
T Consensus         5 P~v~~~~v~~gs--~dg~v~a~d~~tG~~~W~~~-~--~-~-~~s~p~~~~g~~~v~~s-~dg~l~a~d~~t--G~~~w~   74 (369)
T 2hz6_A            5 VTLPETLLFVST--LDGSLHAVSKRTGSIKWTLK-E--D-P-VLQVPTHVEEPAFLPDP-NDGSLYTLGSKN--NEGLTK   74 (369)
T ss_dssp             ---CTTEEEEEE--TTSEEEEEETTTCCEEEEEE-C--C-C-SCCCC-----CCEEECT-TTCCEEEC-------CCSEE
T ss_pred             CeeeCCEEEEEc--CCCEEEEEECCCCCEEEEec-C--C-C-ceecceEcCCCEEEEeC-CCCEEEEEECCC--Cceeee
Confidence            355678888764  3468999998876  47654 2  1 1 11122334666776643 223356666654  334565


Q ss_pred             E
Q 046684          282 L  282 (373)
Q Consensus       282 ~  282 (373)
                      .
T Consensus        75 ~   75 (369)
T 2hz6_A           75 L   75 (369)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}

Probab=81.02  E-value=0.65  Score=26.53  Aligned_cols=16  Identities=25%  Similarity=0.295  Sum_probs=13.5

Q ss_pred             CCcchHHHHHHHHhcC
Q 046684            2 WSNLHLDVLANIFSFL   17 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rL   17 (373)
                      ++.||.|+.+|||+--
T Consensus        21 F~~LP~dIQ~Ells~~   36 (48)
T 2kwv_A           21 FKQLPADIQEEILSGK   36 (48)
T ss_dssp             TTTSCHHHHHHHTTCC
T ss_pred             HHHCcHHHHHHHHhcc
Confidence            6789999999999843

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=80.20  E-value=19  Score=32.64  Aligned_cols=118  Identities=9%  Similarity=0.033  Sum_probs=64.1

Q ss_pred             CCEEEEEE-----cCCceEEEEEECCCCcEEecccCCCC--CCCceeE-EEECCEEEEEEe------------------e
Q 046684          208 RGMLYWIT-----SARAYSVIGFDIESNTWRELSAPMAD--RLEFATL-VSRNQKLTLIGG------------------T  261 (373)
Q Consensus       208 ~g~ly~~g-----g~~~~~i~~yd~~~~~w~~~~~~~p~--~~~~~~~-~~~~g~l~~~gg------------------~  261 (373)
                      +| +|+-.     |...+.+..+|.++.+-... .+.+.  ....+.+ ..-+++.++...                  .
T Consensus       148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~-~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~  225 (462)
T 2ece_A          148 DA-IYISALGNEEGEGPGGILMLDHYSFEPLGK-WEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR  225 (462)
T ss_dssp             SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEE-CCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred             Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEE-EccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence            46 77754     23357899999997764433 22221  1112222 233555555442                  1


Q ss_pred             cCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE--EecCCEEEEEEc-----CCccEEEEEccccCCc
Q 046684          262 CGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC--AAGNGAICLYRE-----VGLGMIIWREDEDKRK  334 (373)
Q Consensus       262 ~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~-----~~~~~~~yd~~~~~~~  334 (373)
                      .+..+.+|+++.    .  +.+..++.+.-.. .     .+...+  ...+...|+...     .++.+++|..+  .+ 
T Consensus       226 ~~d~V~v~D~~~----~--k~~~tI~vg~~g~-~-----P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d--~g-  290 (462)
T 2ece_A          226 YGNRIHFWDLRK----R--KRIHSLTLGEENR-M-----ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE--DG-  290 (462)
T ss_dssp             SCCEEEEEETTT----T--EEEEEEESCTTEE-E-----EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE--TT-
T ss_pred             cCCEEEEEECCC----C--cEeeEEecCCCCC-c-----cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec--CC-
Confidence            133488888854    3  5666665531100 0     001112  223668888887     77889888888  77 


Q ss_pred             ccEEEeccc
Q 046684          335 WEWVWVGGC  343 (373)
Q Consensus       335 ~~W~~~~~~  343 (373)
                       +|+.+...
T Consensus       291 -~~~~~~vI  298 (462)
T 2ece_A          291 -KWNAEKVI  298 (462)
T ss_dssp             -EEEEEEEE
T ss_pred             -ceeEEEEE
Confidence             78776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	373
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-07
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	2e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.003

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (103), Expect = 6e-07
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 2  WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAK 37
          W +L  ++L  IFS L    L +   VC  W+  A 
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 1  MWSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHL-HSVSQHRRPAWFLALPTR 59
            S L  ++   + SFL P  L +A   C +W   A+   L     +       L +  R
Sbjct: 18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRR 77

Query: 60 NRGLCCYVHNP 70
                ++H+P
Sbjct: 78 KVIKPGFIHSP 88

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 8  DVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHL 41
           +  NI S+L   SL  A+ VC  W+       L
Sbjct: 21 HIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 6/35 (17%), Positives = 17/35 (48%)

Query: 2  WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCA 36
           ++L  ++   IF++L  + +  +  V  +W+   
Sbjct: 6  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	373
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.97
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.81
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.63
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.62
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.3
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.63
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.59
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.57
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.4
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.36
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.12
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.9
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	95.57
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.33
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	94.6
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	94.59
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	94.51
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	94.2
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	94.05
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	93.97
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	93.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.61
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.57
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	93.46
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.21
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.14
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	92.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	92.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	92.58
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.33
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	92.14
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	91.71
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	91.46
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	91.32
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	91.2
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	90.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.59
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	90.55
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.04
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	90.01
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	89.63
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	89.49
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	89.38
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	88.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.63
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.48
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	88.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	87.96
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	87.7
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	87.18
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	86.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	85.83
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	85.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	85.56
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	85.4
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	83.91
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.71
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.74
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	81.75

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.1e-30  Score=221.40  Aligned_cols=255  Identities=20%  Similarity=0.239  Sum_probs=209.8

Q ss_pred             ceEEEEEecCC--CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC-------CceEEEEEcCcccceec
Q 046684           51 AWFLALPTRNR--GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS-------TILQLVLCNPFTRQFRY  121 (373)
Q Consensus        51 ~~l~~~~~~~~--~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~-------~~~~~~v~np~t~~w~~  121 (373)
                      ..++++++...  ...++.||+.+++|.+++.++.+|..+++++.++.||++||..       ...++++|||.+++|+.
T Consensus         5 ~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~   84 (288)
T d1zgka1           5 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP   84 (288)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred             CEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccc
Confidence            35667766543  2678889999999999988888999999999999999999852       24578999999999999


Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccC
Q 046684          122 LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTP  201 (373)
Q Consensus       122 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  201 (373)
                      +++++.+|..+++++.+           +++|++||..     +......++.||..++.|.....++       ..+..
T Consensus        85 ~~~~p~~r~~~~~~~~~-----------~~i~~~gg~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~r~~  141 (288)
T d1zgka1          85 CAPMSVPRNRIGVGVID-----------GHIYAVGGSH-----GCIHHNSVERYEPERDEWHLVAPML-------TRRIG  141 (288)
T ss_dssp             CCCCSSCCBTCEEEEET-----------TEEEEECCEE-----TTEECCCEEEEETTTTEEEECCCCS-------SCCBS
T ss_pred             cccccceecceeccccc-----------eeeEEeccee-----cccccceeeeeccccCccccccccc-------ccccc
Confidence            99999999999998887           9999999887     6677788999999999999988873       45677


Q ss_pred             CceEEECCEEEEEEcC----CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc--eEEEEeecCC
Q 046684          202 NESVCTRGMLYWITSA----RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD--ACVWELSEGG  275 (373)
Q Consensus       202 ~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~--~~i~~~~~~~  275 (373)
                      +.++..++++|++||.    ....+..||+.+++|... ...+..+..+..+..+++|+++||.....  ...|..+.  
T Consensus       142 ~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~--  218 (288)
T d1zgka1         142 VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV--  218 (288)
T ss_dssp             CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEET--
T ss_pred             ceeeeeeecceEecCcccccccceEEEeeccccccccc-cccccccccccccceeeeEEEecCccccccccceeeeee--
Confidence            8888999999999853    256799999999999998 56677777788899999999999876543  23344444  


Q ss_pred             CCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEecccccC
Q 046684          276 DDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVGGCCLT  346 (373)
Q Consensus       276 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~~~~~~  346 (373)
                      .+++|+.+..+|.++.           .+.++..+++||++||..     ..+++||++  ++  +|+.+...|.+
T Consensus       219 ~~~~~~~~~~~p~~r~-----------~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~--~~--~W~~~~~~p~~  279 (288)
T d1zgka1         219 ETETWTFVAPMKHRRS-----------ALGITVHQGRIYVLGGYDGHTFLDSVECYDPD--TD--TWSEVTRMTSG  279 (288)
T ss_dssp             TTTEEEECCCCSSCCB-----------SCEEEEETTEEEEECCBCSSCBCCEEEEEETT--TT--EEEEEEECSSC
T ss_pred             cceeeecccCccCccc-----------ceEEEEECCEEEEEecCCCCeecceEEEEECC--CC--EEEECCCCCCC
Confidence            5599999988887664           367777899999998753     458999999  99  99999765544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-23  Score=182.70  Aligned_cols=244  Identities=18%  Similarity=0.267  Sum_probs=191.5

Q ss_pred             hHHHhhcccccchhccccccchhhccC-CCCceEEEEEecC-------CCeeEEEEeCCCCCccccCCCCCCCCceeEEe
Q 046684           21 SLARAKSVCSHWHTCAKLYHLHSVSQH-RRPAWFLALPTRN-------RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSS   92 (373)
Q Consensus        21 ~l~r~r~Vck~W~~li~~~~f~~~~~~-~~~~~l~~~~~~~-------~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~   92 (373)
                      ++..+....++|..+..-|.-+..... .....++++++..       ....++.||+.+++|.+++.++.+|..+.++.
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~   99 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV   99 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc
Confidence            344455667789887654432111111 2244566665421       12678899999999999988888999999999


Q ss_pred             eCcEEEEeeCCC---CceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           93 IGSFLLLRPINS---TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        93 ~~g~l~~~gg~~---~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      .+|.+|+++|..   .......+|+.++.|...+.++..+..++++...           .+++++||..     .....
T Consensus       100 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----------~~~~~~GG~~-----~~~~~  163 (288)
T d1zgka1         100 IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN-----------RLLYAVGGFD-----GTNRL  163 (288)
T ss_dssp             ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET-----------TEEEEECCBC-----SSCBC
T ss_pred             cceeeEEecceecccccceeeeeccccCccccccccccccccceeeeee-----------ecceEecCcc-----ccccc
Confidence            999999998852   2446789999999999999999999988888776           8999999987     56667


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCCcEEecccCCCCCCCc
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESNTWRELSAPMADRLEF  245 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~~w~~~~~~~p~~~~~  245 (373)
                      ..++.||+.+++|......+       ..+..++.+..++++|++||.    .......||+.+++|..+ .++|..+..
T Consensus       164 ~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~r~~  235 (288)
T d1zgka1         164 NSAECYYPERNEWRMITAMN-------TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-APMKHRRSA  235 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCS-------SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-CCCSSCCBS
T ss_pred             ceEEEeeccccccccccccc-------cccccccccceeeeEEEecCccccccccceeeeeecceeeecc-cCccCcccc
Confidence            78999999999999988774       345667788999999999853    346789999999999999 688888998


Q ss_pred             eeEEEECCEEEEEEeecCCc----eEEEEeecCCCCCCeEEEEeechhhhh
Q 046684          246 ATLVSRNQKLTLIGGTCGGD----ACVWELSEGGDDDIWCLIEKVPIEMGM  292 (373)
Q Consensus       246 ~~~~~~~g~l~~~gg~~~~~----~~i~~~~~~~~~~~W~~v~~~p~~~~~  292 (373)
                      +.++.++|+||++||.+...    +.+|++    ++++|+++..||.++..
T Consensus       236 ~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~----~~~~W~~~~~~p~~R~~  282 (288)
T d1zgka1         236 LGITVHQGRIYVLGGYDGHTFLDSVECYDP----DTDTWSEVTRMTSGRSG  282 (288)
T ss_dssp             CEEEEETTEEEEECCBCSSCBCCEEEEEET----TTTEEEEEEECSSCCBS
T ss_pred             eEEEEECCEEEEEecCCCCeecceEEEEEC----CCCEEEECCCCCCCcEe
Confidence            99999999999999976543    455555    55999999999988753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.88  E-value=2.3e-22  Score=181.59  Aligned_cols=289  Identities=10%  Similarity=0.060  Sum_probs=189.6

Q ss_pred             cccchhccccccchhhccC-CCCceEEEEEecCC---------CeeEEEEeCCCCCccccCCCCCCCCcee---EEeeCc
Q 046684           29 CSHWHTCAKLYHLHSVSQH-RRPAWFLALPTRNR---------GLCCYVHNPVSDKWHVLSLDFLPYPVRP---VSSIGS   95 (373)
Q Consensus        29 ck~W~~li~~~~f~~~~~~-~~~~~l~~~~~~~~---------~~~~~~~d~~~~~w~~~~~~~~~~~~~~---~~~~~g   95 (373)
                      -.+|...+.-|.-...... ....-++++++...         ...+..||+.+++|...+.+..++..++   +...+|
T Consensus         8 ~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g   87 (387)
T d1k3ia3           8 LGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG   87 (387)
T ss_dssp             SCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS
T ss_pred             CCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC
Confidence            3468776655543211111 33445667665321         1356779999999998866656654432   344589


Q ss_pred             EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEE
Q 046684           96 FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMY  175 (373)
Q Consensus        96 ~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~y  175 (373)
                      .|+++|+.. .+.+.+|||.+++|+.++.++.+|..++++++.+          ++||++||..    .......++++|
T Consensus        88 ~i~v~Gg~~-~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d----------G~v~v~GG~~----~~~~~~~~v~~y  152 (387)
T d1k3ia3          88 QIVVTGGND-AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD----------GRVFTIGGSW----SGGVFEKNGEVY  152 (387)
T ss_dssp             CEEEECSSS-TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT----------SCEEEECCCC----CSSSCCCCEEEE
T ss_pred             cEEEeecCC-CcceeEecCccCcccccccccccccccceeeecC----------Cceeeecccc----ccccccceeeee
Confidence            999988753 4578999999999999999999999888877653          8999999875    144556789999


Q ss_pred             ECCCCceeeecCCCccccccce-----eccCCce--EEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCC-----
Q 046684          176 DSRHDAWQIIGSMPVEFAVRLT-----VWTPNES--VCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL-----  243 (373)
Q Consensus       176 d~~~~~W~~~~~~p~~~~~~~~-----~~~~~~~--~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~-----  243 (373)
                      |+.+++|+.++.++........     .......  ...+|++|+.+ .....+..||+.+..|... ...+..+     
T Consensus       153 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  230 (387)
T d1k3ia3         153 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG-PSTAMNWYYTSGSGDVKSA-GKRQSNRGVAPD  230 (387)
T ss_dssp             ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECC-SSSEEEEEECSTTCEEEEE-EECEETTEECCC
T ss_pred             cCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEec-CcCCcEEecCcccCcEeec-cccccCcccCcc
Confidence            9999999998876432110000     0001111  22367888875 4567889999999999877 3433222     


Q ss_pred             --CceeE--EEECCEEEEEEeecCCc-------eEEEEeecC-CCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC
Q 046684          244 --EFATL--VSRNQKLTLIGGTCGGD-------ACVWELSEG-GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG  311 (373)
Q Consensus       244 --~~~~~--~~~~g~l~~~gg~~~~~-------~~i~~~~~~-~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~  311 (373)
                        ....+  ...+|+++++||.....       ..+.+...+ .....|+.+..||.++..          ...++..++
T Consensus       231 ~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~----------~~~~~~~dg  300 (387)
T d1k3ia3         231 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF----------HTSVVLPDG  300 (387)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS----------CEEEECTTS
T ss_pred             cccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccccccc----------ceeeeccCC
Confidence              22222  22479999999865422       334443331 133456666667776643          245555578


Q ss_pred             EEEEEEcCC-----------ccEEEEEccccCCcccEEEecccccCCC
Q 046684          312 AICLYREVG-----------LGMIIWREDEDKRKWEWVWVGGCCLTGG  348 (373)
Q Consensus       312 ~i~~~~~~~-----------~~~~~yd~~~~~~~~~W~~~~~~~~~~~  348 (373)
                      +||++||..           ..+.+||++  ++  +|+.++..|.+..
T Consensus       301 ~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~--~~--~W~~~~~~~~~R~  344 (387)
T d1k3ia3         301 STFITGGQRRGIPFEDSTPVFTPEIYVPE--QD--TFYKQNPNSIVRV  344 (387)
T ss_dssp             CEEEECCBSBCCTTCCCSBCCCCEEEEGG--GT--EEEECCCCSSCCC
T ss_pred             eEEEECCcccCccCCCCcEeceEEEEECC--CC--eEEECCCCCCccc
Confidence            999998742           247899999  99  9999987665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.81  E-value=1.3e-19  Score=163.33  Aligned_cols=245  Identities=12%  Similarity=0.020  Sum_probs=164.1

Q ss_pred             ceEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEee-CcEEEEeeCCC----CceEEEEEcCcccceeccCCC
Q 046684           51 AWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSI-GSFLLLRPINS----TILQLVLCNPFTRQFRYLPLL  125 (373)
Q Consensus        51 ~~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~-~g~l~~~gg~~----~~~~~~v~np~t~~w~~lp~~  125 (373)
                      ..++++++.+. ..+.+||+.+++|..++.++.+|..+.++.. +|.+|++||..    ...++++|||.+++|..+|.+
T Consensus        87 g~i~v~Gg~~~-~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~  165 (387)
T d1k3ia3          87 GQIVVTGGNDA-KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNA  165 (387)
T ss_dssp             SCEEEECSSST-TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTS
T ss_pred             CcEEEeecCCC-cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCC
Confidence            34555554443 5677899999999999988888888776654 88999999852    245799999999999998876


Q ss_pred             CCCCCC------------CeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCcccc
Q 046684          126 NVSRTN------------PAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFA  193 (373)
Q Consensus       126 ~~~~~~------------~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~  193 (373)
                      +.....            ....+...         ++++++.|+..          ...+.|+..+..|+....++....
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~G~~~~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  226 (387)
T d1k3ia3         166 KVNPMLTADKQGLYRSDNHAWLFGWK---------KGSVFQAGPST----------AMNWYYTSGSGDVKSAGKRQSNRG  226 (387)
T ss_dssp             CSGGGCCCCTTGGGTTTCSCCEEECG---------GGCEEECCSSS----------EEEEEECSTTCEEEEEEECEETTE
T ss_pred             cccccccccccceeeccceeEEEEeC---------CCCEEEecCcC----------CcEEecCcccCcEeeccccccCcc
Confidence            532111            11111111         15666666543          578999999999998877654322


Q ss_pred             ccceeccCCceEE--ECCEEEEEEcCCc-------eEEEE-----EECCCCcEEecccCCCCCCCceeEEEE-CCEEEEE
Q 046684          194 VRLTVWTPNESVC--TRGMLYWITSARA-------YSVIG-----FDIESNTWRELSAPMADRLEFATLVSR-NQKLTLI  258 (373)
Q Consensus       194 ~~~~~~~~~~~~~--~~g~ly~~gg~~~-------~~i~~-----yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~  258 (373)
                      .....+..+.+..  .+|++|++||...       .....     ++...++|..+ .++|..|..+..+++ +|+||++
T Consensus       227 ~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~r~~~~~~~~~dg~i~v~  305 (387)
T d1k3ia3         227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS-NGLYFARTFHTSVVLPDGSTFIT  305 (387)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT-TCCSSCCBSCEEEECTTSCEEEE
T ss_pred             cCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeec-cccccccccceeeeccCCeEEEE
Confidence            2222333333332  3699999986321       11222     23345678888 688888877777776 7899999


Q ss_pred             EeecCC----------ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--------
Q 046684          259 GGTCGG----------DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--------  320 (373)
Q Consensus       259 gg~~~~----------~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------  320 (373)
                      ||....          .+++|+++.    ++|+++..|+.++..+         ..++...+++||++||..        
T Consensus       306 GG~~~~~~~~~~~~~~~ve~Ydp~~----~~W~~~~~~~~~R~~H---------s~a~l~~dG~v~v~GG~~~~~~~~~~  372 (387)
T d1k3ia3         306 GGQRRGIPFEDSTPVFTPEIYVPEQ----DTFYKQNPNSIVRVYH---------SISLLLPDGRVFNGGGGLCGDCTTNH  372 (387)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGG----TEEEECCCCSSCCCTT---------EEEEECTTSCEEEEECCCCTTCSCCC
T ss_pred             CCcccCccCCCCcEeceEEEEECCC----CeEEECCCCCCcccce---------EEEEECCCCEEEEEeCCCcCCCCccc
Confidence            996421          167888866    9999999998877542         223334588999999742        


Q ss_pred             ccEEEEEcc
Q 046684          321 LGMIIWRED  329 (373)
Q Consensus       321 ~~~~~yd~~  329 (373)
                      ..+.+|||-
T Consensus       373 ~~~e~y~Pp  381 (387)
T d1k3ia3         373 FDAQIFTPN  381 (387)
T ss_dssp             CEEEEEECG
T ss_pred             ceEEEEcch
Confidence            357788763

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-13  Score=79.78  Aligned_cols=40  Identities=33%  Similarity=0.563  Sum_probs=38.1

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccc
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHL   41 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f   41 (373)
                      |+.||+|++.+||++||++++++++.|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            7899999999999999999999999999999999998764

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=3.2e-09  Score=74.56  Aligned_cols=43  Identities=16%  Similarity=0.386  Sum_probs=37.8

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccc-cccchhh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAK-LYHLHSV   44 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~-~~~f~~~   44 (373)
                      ++.||+||+++||+.|++++|+++..|||+|+.++. ++...+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~   49 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK   49 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            468999999999999999999999999999999985 5665543

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6e-09  Score=73.58  Aligned_cols=43  Identities=28%  Similarity=0.402  Sum_probs=40.7

Q ss_pred             CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684            2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      .+.||+||+.+||+.||+.+|+++.+|||+|+.++.++.+.+.
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~   61 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE   61 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            4679999999999999999999999999999999999998876

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.2e-08  Score=69.41  Aligned_cols=42  Identities=29%  Similarity=0.419  Sum_probs=38.4

Q ss_pred             Ccch----HHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684            3 SNLH----LDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV   44 (373)
Q Consensus         3 ~~Lp----~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~   44 (373)
                      +.||    +||+.+||+.|++++|+++.+|||+|+.+++++.+.+.
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~   57 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK   57 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            3466    69999999999999999999999999999999988876

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.97  E-value=0.0085  Score=48.87  Aligned_cols=217  Identities=9%  Similarity=0.057  Sum_probs=102.8

Q ss_pred             eeEEEEeCCCCCccc-cCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684           63 LCCYVHNPVSDKWHV-LSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP  141 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~  141 (373)
                      ..+..+|..+.+-.. ++....+ ........+..+++.+..  ...+.++|..+++....-...  ..  ...+...+.
T Consensus        54 ~~i~v~d~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~d  126 (301)
T d1l0qa2          54 NDVSIIDTATNNVIATVPAGSSP-QGVAVSPDGKQVYVTNMA--SSTLSVIDTTSNTVAGTVKTG--KS--PLGLALSPD  126 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEECS--SS--EEEEEECTT
T ss_pred             CEEEEEECCCCceeeeeeccccc-cccccccccccccccccc--cceeeecccccceeeeecccc--cc--ceEEEeecC
Confidence            467778987764322 2222111 111122334455554442  456788888887654321111  11  111222111


Q ss_pred             CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-C-CEEEEEEcCCc
Q 046684          142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-R-GMLYWITSARA  219 (373)
Q Consensus       142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~-g~ly~~gg~~~  219 (373)
                      +       ..+++.+..+          ..+.+++..+..-........         .....+.. + +.+|+. ....
T Consensus       127 g-------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~  179 (301)
T d1l0qa2         127 G-------KKLYVTNNGD----------KTVSVINTVTKAVINTVSVGR---------SPKGIAVTPDGTKVYVA-NFDS  179 (301)
T ss_dssp             S-------SEEEEEETTT----------TEEEEEETTTTEEEEEEECCS---------SEEEEEECTTSSEEEEE-ETTT
T ss_pred             C-------Ceeeeeeccc----------cceeeeeccccceeeecccCC---------CceEEEeeccccceeee-cccc
Confidence            1       4455544332          356778877766433322210         00111222 2 345555 4445


Q ss_pred             eEEEEEECCCCcEEecccCCCCCCCceeEEE-E-CCEEEEEEeecCC-ceEEEEeecCCCCCCeEEEEeechhhhhhhcC
Q 046684          220 YSVIGFDIESNTWRELSAPMADRLEFATLVS-R-NQKLTLIGGTCGG-DACVWELSEGGDDDIWCLIEKVPIEMGMRLSG  296 (373)
Q Consensus       220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~-~g~l~~~gg~~~~-~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~  296 (373)
                      ..+..++....+.... ...+...  ..++. . +..+++....... .+.+|++.      ..+.+..++.....    
T Consensus       180 ~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~------t~~~~~~~~~~~~~----  246 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDT-VKVEAAP--SGIAVNPEGTKAYVTNVDKYFNTVSMIDTG------TNKITARIPVGPDP----  246 (301)
T ss_dssp             TEEEEEETTTTEEEEE-EECSSEE--EEEEECTTSSEEEEEEECSSCCEEEEEETT------TTEEEEEEECCSSE----
T ss_pred             cccccccccceeeeec-ccccCCc--ceeeccccccccccccccceeeeeeeeecC------CCeEEEEEcCCCCE----
Confidence            6677777776655544 2222111  12222 2 3455555433222 36666653      34555555432211    


Q ss_pred             CCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          297 GKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                           ....+...|..||+.+...+.|.+||++  ++
T Consensus       247 -----~~va~spdg~~l~va~~~~~~i~v~D~~--t~  276 (301)
T d1l0qa2         247 -----AGIAVTPDGKKVYVALSFCNTVSVIDTA--TN  276 (301)
T ss_dssp             -----EEEEECTTSSEEEEEETTTTEEEEEETT--TT
T ss_pred             -----EEEEEeCCCCEEEEEECCCCeEEEEECC--CC
Confidence                 0122223456788888888889999999  88

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.89  E-value=0.085  Score=43.45  Aligned_cols=200  Identities=11%  Similarity=0.003  Sum_probs=94.4

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      +.+|..++.|+.  ...+.+||..+++......++.... .-.++...+   +     ++.++.++.+     .   ...
T Consensus        67 sp~g~~latg~~--dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~---d-----~~~l~~~~~~-----~---~~~  127 (311)
T d1nr0a1          67 SPSGYYCASGDV--HGNVRIWDTTQTTHILKTTIPVFSG-PVKDISWDS---E-----SKRIAAVGEG-----R---ERF  127 (311)
T ss_dssp             CTTSSEEEEEET--TSEEEEEESSSTTCCEEEEEECSSS-CEEEEEECT---T-----SCEEEEEECC-----S---SCS
T ss_pred             eCCCCeEecccc--CceEeeeeeeccccccccccccccC-ccccccccc---c-----cccccccccc-----c---ccc
Confidence            335655555543  4679999998876532222221111 112222211   1     5555555432     1   123


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV  249 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~  249 (373)
                      +.+++..+++-.  ..+..     +  ......+.+  +|...++.|.....|..||..+.+-... ..  ........+
T Consensus       128 ~~v~~~~~~~~~--~~l~~-----h--~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~-~~--~~~~~i~~v  195 (311)
T d1nr0a1         128 GHVFLFDTGTSN--GNLTG-----Q--ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-FG--EHTKFVHSV  195 (311)
T ss_dssp             EEEEETTTCCBC--BCCCC-----C--SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE-EC--CCSSCEEEE
T ss_pred             cccccccccccc--ccccc-----c--ccccccccccccceeeecccccccccccccccccccccc-cc--ccccccccc
Confidence            567776655421  11110     0  011111222  3443333344556788999987665443 11  111112222


Q ss_pred             EE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684          250 SR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       250 ~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd  327 (373)
                      ..  ++.+++.++. +..+.+|++..      .+.+..+.......  .+........+...++..++.++.++.+.+||
T Consensus       196 ~~~p~~~~l~~~~~-d~~v~~~d~~~------~~~~~~~~~~~~~~--~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         196 RYNPDGSLFASTGG-DGTIVLYNGVD------GTKTGVFEDDSLKN--VAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             EECTTSSEEEEEET-TSCEEEEETTT------CCEEEECBCTTSSS--CSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCccccccccccc-ccccccccccc------cccccccccccccc--ccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence            22  5666665543 44578998854      33444443322111  00000001222233566677777777899999


Q ss_pred             ccccCC
Q 046684          328 EDEDKR  333 (373)
Q Consensus       328 ~~~~~~  333 (373)
                      .+  ++
T Consensus       267 ~~--t~  270 (311)
T d1nr0a1         267 VA--TL  270 (311)
T ss_dssp             TT--TT
T ss_pred             CC--CC
Confidence            99  88

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.65  E-value=0.061  Score=43.41  Aligned_cols=216  Identities=11%  Similarity=0.021  Sum_probs=104.1

Q ss_pred             eeEEEEeCCCCCcccc-CCCCCCCCceeEEee-CcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCCCCCeEEEEEc
Q 046684           63 LCCYVHNPVSDKWHVL-SLDFLPYPVRPVSSI-GSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSRTNPAVGIVME  139 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~-~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~  139 (373)
                      ..+..+|+.+.+.... +....|  .....+- +..+|+.+..  ...+.+||..+++-.. ++..   .....++  ..
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~p--~~va~spdG~~l~v~~~~--~~~i~v~d~~t~~~~~~~~~~---~~~~~~~--~~   82 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSNP--MGAVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAG---SSPQGVA--VS   82 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSE--EEEEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECS---SSEEEEE--EC
T ss_pred             CEEEEEECCCCeEEEEEECCCCc--eEEEEeCCCCEEEEEECC--CCEEEEEECCCCceeeeeecc---ccccccc--cc
Confidence            4677799988865432 332222  1122233 4567776643  4679999999887543 2221   1111222  11


Q ss_pred             CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCC
Q 046684          140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSAR  218 (373)
Q Consensus       140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~  218 (373)
                      .. .      ..+++.+...          ..+.+++..+++-........         .....++ -+|...++.+..
T Consensus        83 ~~-~------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~dg~~~~~~~~~  136 (301)
T d1l0qa2          83 PD-G------KQVYVTNMAS----------STLSVIDTTSNTVAGTVKTGK---------SPLGLALSPDGKKLYVTNNG  136 (301)
T ss_dssp             TT-S------SEEEEEETTT----------TEEEEEETTTTEEEEEEECSS---------SEEEEEECTTSSEEEEEETT
T ss_pred             cc-c------cccccccccc----------ceeeecccccceeeeeccccc---------cceEEEeecCCCeeeeeecc
Confidence            11 1      4455544322          457778887765433222210         0011122 245544444455


Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ...+..+|..+.+.... .+....  -..++. .++...++.........+|....    ..............      
T Consensus       137 ~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------  203 (301)
T d1l0qa2         137 DKTVSVINTVTKAVINT-VSVGRS--PKGIAVTPDGTKVYVANFDSMSISVIDTVT----NSVIDTVKVEAAPS------  203 (301)
T ss_dssp             TTEEEEEETTTTEEEEE-EECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETTT----TEEEEEEECSSEEE------
T ss_pred             ccceeeeeccccceeee-cccCCC--ceEEEeeccccceeeecccccccccccccc----eeeeecccccCCcc------
Confidence            66788888887765544 222211  112222 23443333333333345555433    43333333222110      


Q ss_pred             CCCCCceEEEecCCEEEEEEc--CCccEEEEEccccCC
Q 046684          298 KASWGGTRCAAGNGAICLYRE--VGLGMIIWREDEDKR  333 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~--~~~~~~~yd~~~~~~  333 (373)
                           ...+...++.+|+...  ..+.+.++|..  ++
T Consensus       204 -----~~~~~~~g~~~~v~~~~~~~~~v~v~D~~--t~  234 (301)
T d1l0qa2         204 -----GIAVNPEGTKAYVTNVDKYFNTVSMIDTG--TN  234 (301)
T ss_dssp             -----EEEECTTSSEEEEEEECSSCCEEEEEETT--TT
T ss_pred             -----eeeccccccccccccccceeeeeeeeecC--CC
Confidence                 2334445677777653  33569999999  77

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.63  E-value=0.079  Score=42.95  Aligned_cols=178  Identities=8%  Similarity=0.079  Sum_probs=90.7

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPA  142 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~  142 (373)
                      ..+..+++....+..+...............+|.+|+....  ...+.++++..+....+....... .+.....+    
T Consensus        93 ~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~--~~~~~~~~~~g~~~~~~g~~~~~~-~~~~i~~d----  165 (279)
T d1q7fa_          93 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK--VMRVIIFDQNGNVLHKFGCSKHLE-FPNGVVVN----  165 (279)
T ss_dssp             CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT--TTEEEEECTTSCEEEEEECTTTCS-SEEEEEEC----
T ss_pred             cccccccccccceeecCCCcccccceeccccCCcEEEEeec--cceeeEeccCCceeeccccccccc-ccceeeec----
Confidence            35555666555444443322222222233346777777653  467888998765444332211111 11222222    


Q ss_pred             CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCce
Q 046684          143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAY  220 (373)
Q Consensus       143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~  220 (373)
                      .+     +.+|+.....          ..+++||...+....+.... .       ......+.+  +|.+|+.......
T Consensus       166 ~~-----g~i~v~d~~~----------~~V~~~d~~G~~~~~~g~~g-~-------~~~P~giavD~~G~i~Vad~~~~~  222 (279)
T d1q7fa_         166 DK-----QEIFISDNRA----------HCVKVFNYEGQYLRQIGGEG-I-------TNYPIGVGINSNGEILIADNHNNF  222 (279)
T ss_dssp             SS-----SEEEEEEGGG----------TEEEEEETTCCEEEEESCTT-T-------SCSEEEEEECTTCCEEEEECSSSC
T ss_pred             cc-----eeEEeeeccc----------cceeeeecCCceeeeecccc-c-------ccCCcccccccCCeEEEEECCCCc
Confidence            11     6788876443          57899998776555554221 0       111122333  5889988543445


Q ss_pred             EEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeec
Q 046684          221 SVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       221 ~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      .|..||++-+--..+..+.... ....+++ -+|.||+..  .+..+.+|+...
T Consensus       223 ~v~~f~~~G~~~~~~~~~~~~~-~p~~vav~~dG~l~V~~--~n~~v~~fr~~~  273 (279)
T d1q7fa_         223 NLTIFTQDGQLISALESKVKHA-QCFDVALMDDGSVVLAS--KDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEEECTTSCEEEEEEESSCCS-CEEEEEEETTTEEEEEE--TTTEEEEEECSC
T ss_pred             EEEEECCCCCEEEEEeCCCCCC-CEeEEEEeCCCcEEEEe--CCCeEEEEEeee
Confidence            7899997644222231222111 2233433 377887754  334488888765

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.59  E-value=0.078  Score=44.80  Aligned_cols=151  Identities=11%  Similarity=0.012  Sum_probs=76.6

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      .+|..++.++.  ...+.+||..++++..+..+............. +.        ++.++.|+.+          ..+
T Consensus        17 ~dg~~la~~~~--~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fs-p~--------~~~l~s~s~D----------~~i   75 (371)
T d1k8kc_          17 KDRTQIAICPN--NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PD--------SNRIVTCGTD----------RNA   75 (371)
T ss_dssp             TTSSEEEEECS--SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE-TT--------TTEEEEEETT----------SCE
T ss_pred             CCCCEEEEEeC--CCEEEEEECCCCCEEEEEEecCCCCCEEEEEEC-CC--------CCEEEEEECC----------CeE
Confidence            35555555543  457899999988887765554322221222222 21        4445555544          358


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEc-CCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITS-ARAYSVIGFDIESNTWRELSAPMADRLEFATLV  249 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg-~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~  249 (373)
                      .+||..++.|........       .......+.+  ++...+.++ ...-.++.++..++.+... ............+
T Consensus        76 ~vWd~~~~~~~~~~~~~~-------~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~v~~v  147 (371)
T d1k8kc_          76 YVWTLKGRTWKPTLVILR-------INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIRSTVLSL  147 (371)
T ss_dssp             EEEEEETTEEEEEEECCC-------CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-EECTTCCSCEEEE
T ss_pred             EEEeeccccccccccccc-------ccccccccccccccccceeecccCcceeeeeeccccccccc-ccccccccccccc
Confidence            889998888886654421       0111111222  455444543 2334555566555555544 2222222222222


Q ss_pred             EE--CCEEEEEEeecCCceEEEEeec
Q 046684          250 SR--NQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       250 ~~--~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      ..  ++++++.++ .+..+.+|++..
T Consensus       148 ~~~p~~~~l~s~s-~D~~v~v~~~~~  172 (371)
T d1k8kc_         148 DWHPNSVLLAAGS-CDFKCRIFSAYI  172 (371)
T ss_dssp             EECTTSSEEEEEE-TTSCEEEEECCC
T ss_pred             cccccccceeccc-cCcEEEEEeecc
Confidence            22  566655554 444578998865

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.57  E-value=0.043  Score=47.88  Aligned_cols=196  Identities=8%  Similarity=0.003  Sum_probs=97.9

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      ..+++++....  ...+.++|+.|++-...  ++.....+.+  ...+.+       ..+|+. +.+          ..+
T Consensus        30 ~~~~~~v~~~d--~g~v~v~D~~t~~v~~~--~~~g~~~~~v--~fSpDG-------~~l~~~-s~d----------g~v   85 (432)
T d1qksa2          30 LENLFSVTLRD--AGQIALIDGSTYEIKTV--LDTGYAVHIS--RLSASG-------RYLFVI-GRD----------GKV   85 (432)
T ss_dssp             GGGEEEEEETT--TTEEEEEETTTCCEEEE--EECSSCEEEE--EECTTS-------CEEEEE-ETT----------SEE
T ss_pred             CCcEEEEEEcC--CCEEEEEECCCCcEEEE--EeCCCCeeEE--EECCCC-------CEEEEE-cCC----------CCE
Confidence            34566565543  57899999999886542  2222221222  221111       445554 333          368


Q ss_pred             EEEECCCCceeeecCCCccccccceeccC--CceEEECCE-EEEEEcCCceEEEEEECCCCcEEecccCCC---------
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTP--NESVCTRGM-LYWITSARAYSVIGFDIESNTWRELSAPMA---------  240 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~~~~~g~-ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p---------  240 (373)
                      .++|..+++-+....++..    ...+..  .....-+|+ +|+. +.....+..+|.++.+-... .+..         
T Consensus        86 ~~~d~~t~~~~~~~~i~~~----~~~~~~~~s~~~SpDG~~l~vs-~~~~~~v~i~d~~t~~~~~~-~~~~~~~~~~~~~  159 (432)
T d1qksa2          86 NMIDLWMKEPTTVAEIKIG----SEARSIETSKMEGWEDKYAIAG-AYWPPQYVIMDGETLEPKKI-QSTRGMTYDEQEY  159 (432)
T ss_dssp             EEEETTSSSCCEEEEEECC----SEEEEEEECCSTTCTTTEEEEE-EEETTEEEEEETTTCCEEEE-EECCEECTTTCCE
T ss_pred             EEEEeeCCCceEEEEEecC----CCCCCeEEecccCCCCCEEEEE-cCCCCeEEEEeCccccceee-eccCCccccceec
Confidence            8999888765444333210    000000  000112565 5555 45567899999998876544 2211         


Q ss_pred             --CCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc
Q 046684          241 --DRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE  318 (373)
Q Consensus       241 --~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  318 (373)
                        ..+........+|..+++.......+.+|+...    ..-..+..++......         ...+...|..+++...
T Consensus       160 ~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~----~~~~~~~~i~~g~~~~---------~~~~spdg~~~~va~~  226 (432)
T d1qksa2         160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD----LNNLKTTEISAERFLH---------DGGLDGSHRYFITAAN  226 (432)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC----SSEEEEEEEECCSSEE---------EEEECTTSCEEEEEEG
T ss_pred             cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC----CCcceEEEEcccCccc---------cceECCCCCEEEEecc
Confidence              111111122234555544444444455555433    3334455555432210         1223333556777777


Q ss_pred             CCccEEEEEccccCC
Q 046684          319 VGLGMIIWREDEDKR  333 (373)
Q Consensus       319 ~~~~~~~yd~~~~~~  333 (373)
                      ....+.+.|.+  ++
T Consensus       227 ~~~~v~v~d~~--~~  239 (432)
T d1qksa2         227 ARNKLVVIDTK--EG  239 (432)
T ss_dssp             GGTEEEEEETT--TT
T ss_pred             ccceEEEeecc--cc
Confidence            77788889998  77

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.40  E-value=0.14  Score=41.89  Aligned_cols=199  Identities=9%  Similarity=-0.030  Sum_probs=99.3

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|.||...-.  ...++.+||.+++-+..+. +.  ...+++...+          +.+++...            ..+.
T Consensus        29 ~~~l~wvDi~--~~~I~r~d~~~g~~~~~~~-~~--~~~~i~~~~d----------g~l~va~~------------~gl~   81 (295)
T d2ghsa1          29 SGTAWWFNIL--ERELHELHLASGRKTVHAL-PF--MGSALAKISD----------SKQLIASD------------DGLF   81 (295)
T ss_dssp             TTEEEEEEGG--GTEEEEEETTTTEEEEEEC-SS--CEEEEEEEET----------TEEEEEET------------TEEE
T ss_pred             CCEEEEEECC--CCEEEEEECCCCeEEEEEC-CC--CcEEEEEecC----------CCEEEEEe------------CccE
Confidence            5667766532  4679999999987554321 11  1112333222          66666431            2589


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC---CceEEEEEECCCCcEEecccCCCCCCCceeEEE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA---RAYSVIGFDIESNTWRELSAPMADRLEFATLVS  250 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~---~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~  250 (373)
                      .||+.+++.+.+...+...   ...+.+...+--+|.+|+-...   ....-..|....++...+...+.  . ..+++.
T Consensus        82 ~~d~~tg~~~~l~~~~~~~---~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~--~-~Ng~~~  155 (295)
T d2ghsa1          82 LRDTATGVLTLHAELESDL---PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS--I-PNSICF  155 (295)
T ss_dssp             EEETTTCCEEEEECSSTTC---TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES--S-EEEEEE
T ss_pred             EeecccceeeEEeeeecCC---CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC--C-cceeee
Confidence            9999999998876553210   1111121222236777765421   12223344445566655521111  1 122333


Q ss_pred             E-CC-EEEEEEeecCCceEEEEeecCCCCCC----eEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEE
Q 046684          251 R-NQ-KLTLIGGTCGGDACVWELSEGGDDDI----WCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMI  324 (373)
Q Consensus       251 ~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~----W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  324 (373)
                      . ++ .+|+... ....+..|+++.  +...    -......+.....         ..-.++..+|.||+.....+.|.
T Consensus       156 s~d~~~l~~~dt-~~~~I~~~~~d~--~~~~~~~~~~~~~~~~~~~g~---------pdG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         156 SPDGTTGYFVDT-KVNRLMRVPLDA--RTGLPTGKAEVFIDSTGIKGG---------MDGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             CTTSCEEEEEET-TTCEEEEEEBCT--TTCCBSSCCEEEEECTTSSSE---------EEEEEECTTSCEEEEEETTTEEE
T ss_pred             cCCCceEEEeec-ccceeeEeeecc--cccccccceEEEeccCccccc---------ccceEEcCCCCEEeeeeCCCceE
Confidence            2 33 4666543 223344555543  2222    2222222221110         01233445788999876666899


Q ss_pred             EEEccccCCcccEEEec
Q 046684          325 IWREDEDKRKWEWVWVG  341 (373)
Q Consensus       325 ~yd~~~~~~~~~W~~~~  341 (373)
                      +||++  .+  ....++
T Consensus       224 ~~dp~--G~--~~~~i~  236 (295)
T d2ghsa1         224 RYDTD--GN--HIARYE  236 (295)
T ss_dssp             EECTT--CC--EEEEEE
T ss_pred             EecCC--Cc--EeeEec
Confidence            99998  66  655553

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.066  Score=44.50  Aligned_cols=192  Identities=8%  Similarity=0.003  Sum_probs=91.4

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCCCCCeE-EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSRTNPAV-GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~~~~~~-~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      +.+|..++.|+   ...+.+||..+..-.. +...........+ ++...+        +++.++.|+.+          
T Consensus        60 s~~g~~latg~---dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~--------dg~~l~s~~~d----------  118 (337)
T d1gxra_          60 SNPTRHVYTGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--------DGCTLIVGGEA----------  118 (337)
T ss_dssp             CSSSSEEEEEC---BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--------TSSEEEEEESS----------
T ss_pred             CCCCCEEEEEE---CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC--------CCCEEEEeecc----------
Confidence            44555555555   3579999987754322 1111111111112 222211        14455666554          


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL  248 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~  248 (373)
                      ..+.+||....+.+....+..     ... .....++. ++.+.+.+ .....+..+|..+++-... ..... .....+
T Consensus       119 g~i~iwd~~~~~~~~~~~~~~-----~~~-~v~~~~~~~~~~~l~s~-~~d~~i~~~~~~~~~~~~~-~~~~~-~~v~~l  189 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAELTS-----SAP-ACYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVRQ-FQGHT-DGASCI  189 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEEC-----SSS-CEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEE-ECCCS-SCEEEE
T ss_pred             ccccccccccccccccccccc-----ccc-ccccccccccccccccc-ccccccccccccccccccc-ccccc-cccccc
Confidence            468899987766554433210     000 00111122 34444443 4456788999988765443 12111 111122


Q ss_pred             EE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE-EecCCEEEEEEcCCccEEEE
Q 046684          249 VS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC-AAGNGAICLYREVGLGMIIW  326 (373)
Q Consensus       249 ~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~y  326 (373)
                      .. .++..+++++ .+..+.+|++..    .+  .+........           ...+ ...++..++.++..+.+.+|
T Consensus       190 ~~s~~~~~~~~~~-~d~~v~i~d~~~----~~--~~~~~~~~~~-----------i~~l~~~~~~~~l~~~~~d~~i~i~  251 (337)
T d1gxra_         190 DISNDGTKLWTGG-LDNTVRSWDLRE----GR--QLQQHDFTSQ-----------IFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             EECTTSSEEEEEE-TTSEEEEEETTT----TE--EEEEEECSSC-----------EEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccccccccccccc-cccccccccccc----ce--eecccccccc-----------eEEEEEcccccccceeccccccccc
Confidence            22 2555555554 344578998865    32  2322221100           1222 23355566667777789999


Q ss_pred             EccccCC
Q 046684          327 REDEDKR  333 (373)
Q Consensus       327 d~~~~~~  333 (373)
                      |.+  +.
T Consensus       252 d~~--~~  256 (337)
T d1gxra_         252 HVN--KP  256 (337)
T ss_dssp             ETT--SS
T ss_pred             ccc--cc
Confidence            998  76

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.36  E-value=0.18  Score=40.63  Aligned_cols=192  Identities=13%  Similarity=0.089  Sum_probs=94.9

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCC--CCC-CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN--VSR-TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY  168 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~--~~~-~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~  168 (373)
                      ..+|.||+....  .+.+.+||+..+--+..+...  ... ..+.-....+ ...      ..+++..+.          
T Consensus        31 d~dg~i~VaD~~--n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~------~~~~~~~~~----------   91 (279)
T d1q7fa_          31 NAQNDIIVADTN--NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVR-NSG------DIIVTERSP----------   91 (279)
T ss_dssp             CTTCCEEEEEGG--GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEET-TTT------EEEEEECGG----------
T ss_pred             cCCCCEEEEECC--CCEEEEEeCCCCEEEEecccCCCcccccccccccccc-ccc------ccceeccCC----------
Confidence            357889998653  578999998744323333221  111 1122222221 111      333332221          


Q ss_pred             cceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce
Q 046684          169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA  246 (373)
Q Consensus       169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~  246 (373)
                      ...+..++.....++......         ........+  +|.+|+.. .....+..||+..+.-..+ ..........
T Consensus        92 ~~~i~~~~~~g~~~~~~~~~~---------~~~p~~~avd~~G~i~v~~-~~~~~~~~~~~~g~~~~~~-g~~~~~~~~~  160 (279)
T d1q7fa_          92 THQIQIYNQYGQFVRKFGATI---------LQHPRGVTVDNKGRIIVVE-CKVMRVIIFDQNGNVLHKF-GCSKHLEFPN  160 (279)
T ss_dssp             GCEEEEECTTSCEEEEECTTT---------CSCEEEEEECTTSCEEEEE-TTTTEEEEECTTSCEEEEE-ECTTTCSSEE
T ss_pred             ccccccccccccceeecCCCc---------ccccceeccccCCcEEEEe-eccceeeEeccCCceeecc-cccccccccc
Confidence            245778887666666553321         011112223  57888884 4466788999887655544 1222212222


Q ss_pred             eEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE-ecCCEEEEEEcCC-ccE
Q 046684          247 TLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-AGNGAICLYREVG-LGM  323 (373)
Q Consensus       247 ~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~  323 (373)
                      .++. -+|.||+..... ..+.+|+.+    .+....+.. + ..+         ..+..++ ..++.||+.+... ..+
T Consensus       161 ~i~~d~~g~i~v~d~~~-~~V~~~d~~----G~~~~~~g~-~-g~~---------~~P~giavD~~G~i~Vad~~~~~~v  224 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRA-HCVKVFNYE----GQYLRQIGG-E-GIT---------NYPIGVGINSNGEILIADNHNNFNL  224 (279)
T ss_dssp             EEEECSSSEEEEEEGGG-TEEEEEETT----CCEEEEESC-T-TTS---------CSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             eeeeccceeEEeeeccc-cceeeeecC----Cceeeeecc-c-ccc---------cCCcccccccCCeEEEEECCCCcEE
Confidence            2332 367888876543 224444432    232222211 1 111         1134433 3467899987543 358


Q ss_pred             EEEEcc
Q 046684          324 IIWRED  329 (373)
Q Consensus       324 ~~yd~~  329 (373)
                      .+|+++
T Consensus       225 ~~f~~~  230 (279)
T d1q7fa_         225 TIFTQD  230 (279)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.12  E-value=0.041  Score=46.62  Aligned_cols=151  Identities=9%  Similarity=0.044  Sum_probs=83.6

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      ++.+++|+.+          ..+.+||..++++..+..+..      ....-..+++. ++.+.+.+ .....+..+|+.
T Consensus        19 g~~la~~~~~----------~~i~iw~~~~~~~~~~~~l~g------H~~~V~~l~fsp~~~~l~s~-s~D~~i~vWd~~   81 (371)
T d1k8kc_          19 RTQIAICPNN----------HEVHIYEKSGNKWVQVHELKE------HNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLK   81 (371)
T ss_dssp             SSEEEEECSS----------SEEEEEEEETTEEEEEEEEEC------CSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEE
T ss_pred             CCEEEEEeCC----------CEEEEEECCCCCEEEEEEecC------CCCCEEEEEECCCCCEEEEE-ECCCeEEEEeec
Confidence            5566666543          368899998888877654410      00011122222 45544443 345678889999


Q ss_pred             CCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          229 SNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      +++|... ............+..  +++.+++++ .+..+.+|.++.  ....+........-...          ...+
T Consensus        82 ~~~~~~~-~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~--~~~~~~~~~~~~~~~~~----------v~~v  147 (371)
T d1k8kc_          82 GRTWKPT-LVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQ--ENDWWVCKHIKKPIRST----------VLSL  147 (371)
T ss_dssp             TTEEEEE-EECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEET--TTTEEEEEEECTTCCSC----------EEEE
T ss_pred             ccccccc-cccccccccccccccccccccceeec-ccCcceeeeeec--ccccccccccccccccc----------cccc
Confidence            9988866 333333322222222  566555554 344478999986  44444443332211100          1222


Q ss_pred             Ee-cCCEEEEEEcCCccEEEEEccccCC
Q 046684          307 AA-GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       307 ~~-~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .. .++..++.++.++.+.+||..  ..
T Consensus       148 ~~~p~~~~l~s~s~D~~v~v~~~~--~~  173 (371)
T d1k8kc_         148 DWHPNSVLLAAGSCDFKCRIFSAY--IK  173 (371)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECC--CT
T ss_pred             cccccccceeccccCcEEEEEeec--cC
Confidence            22 356677778777789999987  55

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.94  E-value=0.3  Score=39.18  Aligned_cols=137  Identities=10%  Similarity=0.021  Sum_probs=65.6

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee-
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT-  247 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~-  247 (373)
                      ..+.+||.++++-..+.....       ...-..+++. ++...+.+ .....+..||..++........+..+..... 
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~  229 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVH-------PAEITSVAFSNNGAFLVAT-DQSRKVIPYSVANNFELAHTNSWTFHTAKVAC  229 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEEC-------SSCEEEEEECTTSSEEEEE-ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE
T ss_pred             ccccccccccccccccccccc-------ccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            457778877665443322210       0000111222 34444443 4456799999988765543123332222222 


Q ss_pred             EEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEE
Q 046684          248 LVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIW  326 (373)
Q Consensus       248 ~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~y  326 (373)
                      +.. -++.+++.++.+ ..+.+|+++.    .....+.........         ....++..++..++.++.++.+.+|
T Consensus       230 l~~s~~~~~l~sgs~d-g~i~iwd~~~----~~~~~~~~~~~~~~~---------~v~~~~~~~~~~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         230 VSWSPDNVRLATGSLD-NSVIVWNMNK----PSDHPIIIKGAHAMS---------SVNSVIWLNETTIVSAGQDSNIKFW  295 (299)
T ss_dssp             EEECTTSSEEEEEETT-SCEEEEETTC----TTSCCEEETTSSTTS---------CEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ccccccccceEEEcCC-CEEEEEECCC----CCcceEEEecCCCCC---------cEEEEEECCCCEEEEEeCCCEEEEE
Confidence            222 256666666543 4589999875    322222211110000         0122233344455566677788888


Q ss_pred             Ec
Q 046684          327 RE  328 (373)
Q Consensus       327 d~  328 (373)
                      |+
T Consensus       296 dl  297 (299)
T d1nr0a2         296 NV  297 (299)
T ss_dssp             EC
T ss_pred             ec
Confidence            86

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.90  E-value=0.35  Score=39.77  Aligned_cols=200  Identities=11%  Similarity=0.010  Sum_probs=101.4

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceecc-CCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYL-PLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      +|.||+..-.  ...++.+||.+++.... .+...  ....++ .. +   +     +++|+....      .......+
T Consensus        50 ~G~Ly~~D~~--~g~I~ri~p~g~~~~~~~~~~~~--~p~gla-~~-~---d-----G~l~va~~~------~~~~~~~i  109 (319)
T d2dg1a1          50 QGQLFLLDVF--EGNIFKINPETKEIKRPFVSHKA--NPAAIK-IH-K---D-----GRLFVCYLG------DFKSTGGI  109 (319)
T ss_dssp             TSCEEEEETT--TCEEEEECTTTCCEEEEEECSSS--SEEEEE-EC-T---T-----SCEEEEECT------TSSSCCEE
T ss_pred             CCCEEEEECC--CCEEEEEECCCCeEEEEEeCCCC--CeeEEE-EC-C---C-----CCEEEEecC------CCccceeE
Confidence            5567776542  46789999998865442 22111  111222 22 1   1     778887421      12234567


Q ss_pred             EEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEc-----CCceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684          173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS-----ARAYSVIGFDIESNTWRELSAPMADRLEFAT  247 (373)
Q Consensus       173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg-----~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~  247 (373)
                      ..++..++..........     ...+.+...+--+|.+|+-..     .....++.+++.....+.+...+..   ..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~-----~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~---pnG  181 (319)
T d2dg1a1         110 FAATENGDNLQDIIEDLS-----TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV---ANG  181 (319)
T ss_dssp             EEECTTSCSCEEEECSSS-----SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS---EEE
T ss_pred             EEEcCCCceeeeeccCCC-----cccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccce---eee
Confidence            778887776544332210     001111111223688887641     1245788899988777665222211   123


Q ss_pred             EEEE-CC-EEEEEEeecCCceEEEEeecCCCCCC-eEEEEeechhhhhhhcCCCCCCCce-EEEecCCEEEEEEcCCccE
Q 046684          248 LVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDI-WCLIEKVPIEMGMRLSGGKASWGGT-RCAAGNGAICLYREVGLGM  323 (373)
Q Consensus       248 ~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~  323 (373)
                      ++.. ++ .||+..... ..+..|+++.  +... .......+......       ..+- .++..+|.||+.....+.|
T Consensus       182 ia~s~dg~~lyvad~~~-~~I~~~d~~~--~g~~~~~~~~~~~~~~~~~-------~~PdGl~vD~~G~l~Va~~~~g~V  251 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTA-NRLHRIALED--DGVTIQPFGATIPYYFTGH-------EGPDSCCIDSDDNLYVAMYGQGRV  251 (319)
T ss_dssp             EEECTTSSEEEEEEGGG-TEEEEEEECT--TSSSEEEEEEEEEEECCSS-------SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             eeeccccceEEEecccC-CceEEEEEcC--CCceeccccceeeeccCCc-------cceeeeeEcCCCCEEEEEcCCCEE
Confidence            4432 44 588776433 3355666554  2222 22212211111000       0022 3344578899998777889


Q ss_pred             EEEEccccCC
Q 046684          324 IIWREDEDKR  333 (373)
Q Consensus       324 ~~yd~~~~~~  333 (373)
                      .+||++  -+
T Consensus       252 ~~~~p~--G~  259 (319)
T d2dg1a1         252 LVFNKR--GY  259 (319)
T ss_dssp             EEECTT--SC
T ss_pred             EEECCC--Cc
Confidence            999998  55

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.21  Score=41.23  Aligned_cols=187  Identities=9%  Similarity=-0.007  Sum_probs=88.6

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|..++.++.  ...+.+||....+.+....+............ .+   +     +.+++.++.+          ..+.
T Consensus       108 dg~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~---~-----~~~l~s~~~d----------~~i~  166 (337)
T d1gxra_         108 DGCTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAI-SP---D-----SKVCFSCCSD----------GNIA  166 (337)
T ss_dssp             TSSEEEEEES--SSEEEEEECCCC--EEEEEEECSSSCEEEEEE-CT---T-----SSEEEEEETT----------SCEE
T ss_pred             CCCEEEEeec--cccccccccccccccccccccccccccccccc-cc---c-----cccccccccc----------cccc
Confidence            5554454443  46789999876655443333222211111112 11   1     4455555443          3578


Q ss_pred             EEECCCCcee-eecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684          174 MYDSRHDAWQ-IIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR  251 (373)
Q Consensus       174 ~yd~~~~~W~-~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~  251 (373)
                      +++..+++-. .......         ....+++ .++...+.+ ...+.+..||..+.+-... ...+.  .-..++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~---------~v~~l~~s~~~~~~~~~-~~d~~v~i~d~~~~~~~~~-~~~~~--~i~~l~~~  233 (337)
T d1gxra_         167 VWDLHNQTLVRQFQGHTD---------GASCIDISNDGTKLWTG-GLDNTVRSWDLREGRQLQQ-HDFTS--QIFSLGYC  233 (337)
T ss_dssp             EEETTTTEEEEEECCCSS---------CEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEE-EECSS--CEEEEEEC
T ss_pred             cccccccccccccccccc---------ccccccccccccccccc-cccccccccccccceeecc-ccccc--ceEEEEEc
Confidence            8888776522 2221110         0011112 245555553 3467788999887653222 11111  11122222


Q ss_pred             -CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccc
Q 046684          252 -NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDE  330 (373)
Q Consensus       252 -~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~  330 (373)
                       ++..+++++ .+..+.+|+++.    ..-.....-....            .......++..++.++.++.+.+||.. 
T Consensus       234 ~~~~~l~~~~-~d~~i~i~d~~~----~~~~~~~~~~~~i------------~~v~~s~~g~~l~s~s~Dg~i~iwd~~-  295 (337)
T d1gxra_         234 PTGEWLAVGM-ESSNVEVLHVNK----PDKYQLHLHESCV------------LSLKFAYCGKWFVSTGKDNLLNAWRTP-  295 (337)
T ss_dssp             TTSSEEEEEE-TTSCEEEEETTS----SCEEEECCCSSCE------------EEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred             ccccccceec-cccccccccccc----ccccccccccccc------------ceEEECCCCCEEEEEeCCCeEEEEECC-
Confidence             455555554 444578999865    2211111100000            122223456666777777789999998 


Q ss_pred             cCC
Q 046684          331 DKR  333 (373)
Q Consensus       331 ~~~  333 (373)
                       ++
T Consensus       296 -~~  297 (337)
T d1gxra_         296 -YG  297 (337)
T ss_dssp             -TC
T ss_pred             -CC
Confidence             66

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.33  E-value=0.56  Score=38.16  Aligned_cols=180  Identities=7%  Similarity=0.022  Sum_probs=85.8

Q ss_pred             eEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeec
Q 046684          107 LQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIG  186 (373)
Q Consensus       107 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~  186 (373)
                      +.+.++|..+.+-..+  +..... ...++...+        +++.++.|+.+          ..+.+||..++......
T Consensus        38 ~~v~i~~~~~~~~~~~--~~~H~~-~v~~~~~sp--------~g~~latg~~d----------g~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          38 TSVYTVPVGSLTDTEI--YTEHSH-QTTVAKTSP--------SGYYCASGDVH----------GNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             TEEEEEETTCSSCCEE--ECCCSS-CEEEEEECT--------TSSEEEEEETT----------SEEEEEESSSTTCCEEE
T ss_pred             CEEEEEECCCCceeEE--EcCCCC-CEEEEEEeC--------CCCeEeccccC----------ceEeeeeeecccccccc
Confidence            5688888876543322  111111 122222222        15566777665          46899999887643222


Q ss_pred             CCCccccccceeccCCceEEE-CCEEEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeec
Q 046684          187 SMPVEFAVRLTVWTPNESVCT-RGMLYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTC  262 (373)
Q Consensus       187 ~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~  262 (373)
                      .++.     +.. .-..+++. +|...+.++. ....+..+|.++.+-..   .+..+......+..  ++...++.|..
T Consensus        97 ~~~~-----~~~-~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~---~l~~h~~~v~~v~~~~~~~~~l~sgs~  167 (311)
T d1nr0a1          97 TIPV-----FSG-PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG---NLTGQARAMNSVDFKPSRPFRIISGSD  167 (311)
T ss_dssp             EEEC-----SSS-CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB---CCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred             cccc-----ccC-ccccccccccccccccccccccccccccccccccccc---cccccccccccccccccceeeeccccc
Confidence            2210     000 00111121 4555555443 23446677777654321   22222222222222  45544444445


Q ss_pred             CCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          263 GGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       263 ~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      +..+.+|+++.      .+.+..+......         ........++.+++.++..+.+.+||..  ++
T Consensus       168 d~~i~i~d~~~------~~~~~~~~~~~~~---------i~~v~~~p~~~~l~~~~~d~~v~~~d~~--~~  221 (311)
T d1nr0a1         168 DNTVAIFEGPP------FKFKSTFGEHTKF---------VHSVRYNPDGSLFASTGGDGTIVLYNGV--DG  221 (311)
T ss_dssp             TSCEEEEETTT------BEEEEEECCCSSC---------EEEEEECTTSSEEEEEETTSCEEEEETT--TC
T ss_pred             ccccccccccc------ccccccccccccc---------ccccccCccccccccccccccccccccc--cc
Confidence            55578998754      3333333221100         0122222356667777777789999998  66

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.60  E-value=0.64  Score=38.57  Aligned_cols=151  Identities=11%  Similarity=0.088  Sum_probs=68.7

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      +++++.|+.+          ..+.++|..+++........       .. .-...... ++...+. +.....+..+|..
T Consensus       133 ~~~l~s~~~d----------g~v~i~~~~~~~~~~~~~~h-------~~-~v~~~~~~~~~~~~~~-~~~~~~i~~~d~~  193 (388)
T d1erja_         133 GKFLATGAED----------RLIRIWDIENRKIVMILQGH-------EQ-DIYSLDYFPSGDKLVS-GSGDRTVRIWDLR  193 (388)
T ss_dssp             SSEEEEEETT----------SCEEEEETTTTEEEEEECCC-------SS-CEEEEEECTTSSEEEE-EETTSEEEEEETT
T ss_pred             CCcceecccc----------cccccccccccccccccccc-------cc-cccccccccccccccc-cccceeeeeeecc
Confidence            5566666554          35788888777654332210       00 00011111 2334444 3456778888988


Q ss_pred             CCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684          229 SNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC  306 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~  306 (373)
                      +..-... .....  ....+..  .++.+++.++. +..+.+|+...    .........+......    .........
T Consensus       194 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~----~~~~~~~~~~~~~~~~----h~~~v~~l~  261 (388)
T d1erja_         194 TGQCSLT-LSIED--GVTTVAVSPGDGKYIAAGSL-DRAVRVWDSET----GFLVERLDSENESGTG----HKDSVYSVV  261 (388)
T ss_dssp             TTEEEEE-EECSS--CEEEEEECSTTCCEEEEEET-TSCEEEEETTT----CCEEEEEC------CC----CSSCEEEEE
T ss_pred             ccccccc-ccccc--ccccccccCCCCCeEEEEcC-CCeEEEeeccc----CccceeeccccccccC----CCCCEEEEE
Confidence            7655443 12111  1112222  24566555543 34578888754    3332222111111100    000001122


Q ss_pred             EecCCEEEEEEcCCccEEEEEccccCC
Q 046684          307 AAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       307 ~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ...++..++.++.++.+.+||..  +.
T Consensus       262 ~s~~~~~l~s~~~d~~i~iwd~~--~~  286 (388)
T d1erja_         262 FTRDGQSVVSGSLDRSVKLWNLQ--NA  286 (388)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             ECCCCCEEEEEECCCcEEEEecc--CC
Confidence            22355666777777789999987  55

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.59  E-value=0.67  Score=38.00  Aligned_cols=147  Identities=7%  Similarity=0.001  Sum_probs=81.8

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeee-cCCCccccccceeccCCceEE-ECCEEEEEEc---CCceEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII-GSMPVEFAVRLTVWTPNESVC-TRGMLYWITS---ARAYSVIG  224 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg---~~~~~i~~  224 (373)
                      ++||+..-.          ...+..+|+.++..... .....         .....++ -+|.+|+...   .....+..
T Consensus        51 G~Ly~~D~~----------~g~I~ri~p~g~~~~~~~~~~~~---------~p~gla~~~dG~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          51 GQLFLLDVF----------EGNIFKINPETKEIKRPFVSHKA---------NPAAIKIHKDGRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             SCEEEEETT----------TCEEEEECTTTCCEEEEEECSSS---------SEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             CCEEEEECC----------CCEEEEEECCCCeEEEEEeCCCC---------CeeEEEECCCCCEEEEecCCCccceeEEE
Confidence            568887422          24688899888754332 22210         1112222 3689998752   23567899


Q ss_pred             EECCCCcEEecccCCCCC-CCceeEEEECCEEEEEEeecCC---ceEEEEeecCCCCCCeEEEEe-echhhhhhhcCCCC
Q 046684          225 FDIESNTWRELSAPMADR-LEFATLVSRNQKLTLIGGTCGG---DACVWELSEGGDDDIWCLIEK-VPIEMGMRLSGGKA  299 (373)
Q Consensus       225 yd~~~~~w~~~~~~~p~~-~~~~~~~~~~g~l~~~gg~~~~---~~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~~~~  299 (373)
                      +|..+.....+....... +.....+.-+|.||+.......   .-.+|.++.  +....+.+.. +..+.         
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~--dg~~~~~~~~~~~~pn---------  180 (319)
T d2dg1a1         112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP--DFRTVTPIIQNISVAN---------  180 (319)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT--TSCCEEEEEEEESSEE---------
T ss_pred             EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEec--ccceeEEEeeccceee---------
Confidence            999888766552222221 2222233457888886532211   145777765  4455555432 33221         


Q ss_pred             CCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          300 SWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       300 ~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                         +.++...++.||+.....+.|+.||.+
T Consensus       181 ---Gia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         181 ---GIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             ---EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ---eeeeccccceEEEecccCCceEEEEEc
Confidence               233333466899988777889999876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.39  Score=40.04  Aligned_cols=182  Identities=12%  Similarity=0.052  Sum_probs=79.7

Q ss_pred             ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684          106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII  185 (373)
Q Consensus       106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~  185 (373)
                      ...+.+||..+...........    ....+....  .+     +++++.|+.+          ..+.+||..++.....
T Consensus       184 ~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~--~~-----~~~l~~~~~d----------~~i~i~~~~~~~~~~~  242 (388)
T d1erja_         184 DRTVRIWDLRTGQCSLTLSIED----GVTTVAVSP--GD-----GKYIAAGSLD----------RAVRVWDSETGFLVER  242 (388)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS----CEEEEEECS--TT-----CCEEEEEETT----------SCEEEEETTTCCEEEE
T ss_pred             ceeeeeeecccccccccccccc----ccccccccC--CC-----CCeEEEEcCC----------CeEEEeecccCcccee
Confidence            4678888888765443222111    112222211  11     5566666554          3578899887764332


Q ss_pred             cCCCccccccceeccCC-ceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCC----------CCCce-eEEEE-
Q 046684          186 GSMPVEFAVRLTVWTPN-ESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMAD----------RLEFA-TLVSR-  251 (373)
Q Consensus       186 ~~~p~~~~~~~~~~~~~-~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~----------~~~~~-~~~~~-  251 (373)
                      ...+....  ....... .+++. +|...+. +...+.+..||..+..-... ...+.          ..... .++.. 
T Consensus       243 ~~~~~~~~--~~h~~~v~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~  318 (388)
T d1erja_         243 LDSENESG--TGHKDSVYSVVFTRDGQSVVS-GSLDRSVKLWNLQNANNKSD-SKTPNSGTCEVTYIGHKDFVLSVATTQ  318 (388)
T ss_dssp             EC--------CCCSSCEEEEEECTTSSEEEE-EETTSEEEEEEC----------------CEEEEEECCSSCEEEEEECG
T ss_pred             eccccccc--cCCCCCEEEEEECCCCCEEEE-EECCCcEEEEeccCCccccc-cccccccceeeecccccceEEEEEECC
Confidence            22111000  0000011 11221 3554444 34466788888876543322 11110          11111 12221 


Q ss_pred             CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE-------ecCCEEEEEEcCCccEE
Q 046684          252 NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-------AGNGAICLYREVGLGMI  324 (373)
Q Consensus       252 ~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~  324 (373)
                      +|++++.+ ..+..+.+|++..    .  +.+..+..-...          ...+.       ..++.+++.++.++.|.
T Consensus       319 ~~~~l~sg-~~dg~i~vwd~~~----~--~~~~~l~~H~~~----------V~~~~~~~~~~~spd~~~l~s~s~Dg~I~  381 (388)
T d1erja_         319 NDEYILSG-SKDRGVLFWDKKS----G--NPLLMLQGHRNS----------VISVAVANGSSLGPEYNVFATGSGDCKAR  381 (388)
T ss_dssp             GGCEEEEE-ETTSEEEEEETTT----C--CEEEEEECCSSC----------EEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred             CCCEEEEE-eCCCEEEEEECCC----C--cEEEEEeCCCCC----------EEEEEEecCcccCCCCCEEEEEeCCCEEE
Confidence            45555554 4445588998854    2  334333210000          01111       12567788888878899


Q ss_pred             EEEcc
Q 046684          325 IWRED  329 (373)
Q Consensus       325 ~yd~~  329 (373)
                      +||++
T Consensus       382 iW~~~  386 (388)
T d1erja_         382 IWKYK  386 (388)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            99886

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.20  E-value=0.97  Score=35.59  Aligned_cols=196  Identities=11%  Similarity=0.017  Sum_probs=94.0

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM  171 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~  171 (373)
                      ..+|.+|+..... ...+..+++.+..-..... ........+++ . +   +     ++||+.....          ..
T Consensus        22 d~dG~i~v~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~p~gvav-~-~---~-----g~i~v~d~~~----------~~   79 (260)
T d1rwia_          22 DSAGNVYVTSEGM-YGRVVKLATGSTGTTVLPF-NGLYQPQGLAV-D-G---A-----GTVYVTDFNN----------RV   79 (260)
T ss_dssp             CTTCCEEEEECSS-SCEEEEEC----CEEECCC-CSCCSCCCEEE-C-T---T-----CCEEEEETTT----------EE
T ss_pred             cCCCCEEEEEcCC-CCEEEEEcCCCceEEEecc-CCccCceEEEE-c-C---C-----CCEEEeeeee----------ce
Confidence            4477888876421 3467777777654333221 11111122332 2 1   1     6788765332          23


Q ss_pred             EEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE
Q 046684          172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS  250 (373)
Q Consensus       172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~  250 (373)
                      +.+++..+..+......         ......+++ .+|.+|+.. .....+..++.....-... ... ....-.+++.
T Consensus        80 i~~~~~~~~~~~~~~~~---------~~~p~~iavd~~g~i~v~d-~~~~~~~~~~~~~~~~~~~-~~~-~~~~p~~i~~  147 (260)
T d1rwia_          80 VTLAAGSNNQTVLPFDG---------LNYPEGLAVDTQGAVYVAD-RGNNRVVKLAAGSKTQTVL-PFT-GLNDPDGVAV  147 (260)
T ss_dssp             EEECTTCSCCEECCCCS---------CCSEEEEEECTTCCEEEEE-GGGTEEEEECTTCSSCEEC-CCC-SCCSCCEEEE
T ss_pred             eeeeeeccceeeeeeee---------eeecccccccccceeEeec-cccccccccccccceeeee-eec-ccCCcceeee
Confidence            44555444444322110         011112222 357888873 4566788888876543333 111 1111123333


Q ss_pred             -ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe-cCCEEEEEEcCCccEEEEEc
Q 046684          251 -RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA-GNGAICLYREVGLGMIIWRE  328 (373)
Q Consensus       251 -~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~  328 (373)
                       .+|.+|+..... .  .+..++.  +.......   ....+         ..+..++. .+|.||+.+...+.+..|++
T Consensus       148 ~~~g~~~v~~~~~-~--~i~~~d~--~~~~~~~~---~~~~~---------~~p~gi~~d~~g~l~vsd~~~~~i~~~~~  210 (260)
T d1rwia_         148 DNSGNVYVTDTDN-N--RVVKLEA--ESNNQVVL---PFTDI---------TAPWGIAVDEAGTVYVTEHNTNQVVKLLA  210 (260)
T ss_dssp             CTTCCEEEEEGGG-T--EEEEECT--TTCCEEEC---CCSSC---------CSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred             cCCCCEeeecccc-c--ccccccc--ccceeeee---ecccc---------CCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence             367888876433 2  3444443  22332221   11111         11344444 46789999887788999999


Q ss_pred             cccCCcccEEEecc
Q 046684          329 DEDKRKWEWVWVGG  342 (373)
Q Consensus       329 ~~~~~~~~W~~~~~  342 (373)
                      .  ..  ..+.+..
T Consensus       211 ~--~~--~~~~~~~  220 (260)
T d1rwia_         211 G--ST--TSTVLPF  220 (260)
T ss_dssp             T--CS--CCEECCC
T ss_pred             C--CC--eEEEEcc
Confidence            8  66  5555543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.05  E-value=0.88  Score=37.04  Aligned_cols=132  Identities=11%  Similarity=0.037  Sum_probs=69.0

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +|..+.+..   ..++++||..+++.++++.  ..+   ...+...        +|++..++.+.+     .   -..+.
T Consensus        14 dG~~~a~~~---~g~v~v~d~~~~~~~~~~~--~~~---v~~~~~s--------pDg~~l~~~~~~-----~---g~~v~   69 (360)
T d1k32a3          14 DGDLIAFVS---RGQAFIQDVSGTYVLKVPE--PLR---IRYVRRG--------GDTKVAFIHGTR-----E---GDFLG   69 (360)
T ss_dssp             GGGCEEEEE---TTEEEEECTTSSBEEECSC--CSC---EEEEEEC--------SSSEEEEEEEET-----T---EEEEE
T ss_pred             CCCEEEEEE---CCeEEEEECCCCcEEEccC--CCC---EEEEEEC--------CCCCEEEEEEcC-----C---CCEEE
Confidence            555555444   3578999999988887642  111   1122221        125555444332     1   13588


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEEC
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRN  252 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~  252 (373)
                      +||.+++.-+.+...+..         ....++ -+|+..+.+ .....+..+|.++.+...+ ..............-+
T Consensus        70 v~d~~~~~~~~~~~~~~~---------v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spd  138 (360)
T d1k32a3          70 IYDYRTGKAEKFEENLGN---------VFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKPTVI-ERSREAMITDFTISDN  138 (360)
T ss_dssp             EEETTTCCEEECCCCCCS---------EEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEE-EECSSSCCCCEEECTT
T ss_pred             EEECCCCcEEEeeCCCce---------EEeeeeccccccccee-ccccccccccccccceeee-eecccccccchhhccc
Confidence            999999887665443210         111122 255544443 4466788899988776555 2222222222223336


Q ss_pred             CEEEEEEe
Q 046684          253 QKLTLIGG  260 (373)
Q Consensus       253 g~l~~~gg  260 (373)
                      |+.+++..
T Consensus       139 g~~la~~~  146 (360)
T d1k32a3         139 SRFIAYGF  146 (360)
T ss_dssp             SCEEEEEE
T ss_pred             eeeeeeec
Confidence            66555543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.97  E-value=1.1  Score=35.30  Aligned_cols=102  Identities=12%  Similarity=0.034  Sum_probs=57.7

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +|.+|+.. .....+..||++.+.....  .......-.+++. -+|.||+..... .  .++.+..  +....+.+..-
T Consensus       150 ~g~~~v~~-~~~~~i~~~d~~~~~~~~~--~~~~~~~p~gi~~d~~g~l~vsd~~~-~--~i~~~~~--~~~~~~~~~~~  221 (260)
T d1rwia_         150 SGNVYVTD-TDNNRVVKLEAESNNQVVL--PFTDITAPWGIAVDEAGTVYVTEHNT-N--QVVKLLA--GSTTSTVLPFT  221 (260)
T ss_dssp             TCCEEEEE-GGGTEEEEECTTTCCEEEC--CCSSCCSEEEEEECTTCCEEEEETTT-T--EEEEECT--TCSCCEECCCC
T ss_pred             CCCEeeec-cccccccccccccceeeee--eccccCCCccceeeeeeeeeeeecCC-C--EEEEEeC--CCCeEEEEccC
Confidence            57888774 4457899999987765544  1111122233443 367898876322 2  4555544  22333332111


Q ss_pred             chhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCCccEEEEEcc
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .   +         ..+..++.. +|.||+.+...+.|..++..
T Consensus       222 ~---~---------~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         222 G---L---------NTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             S---C---------CCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             C---C---------CCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            1   1         114445544 57899998777789888876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.92  E-value=1.2  Score=35.82  Aligned_cols=131  Identities=5%  Similarity=-0.080  Sum_probs=76.3

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCC----CCc
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADR----LEF  245 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~----~~~  245 (373)
                      ..++.+|+++++-+.. .+|..        .......-+|.+++..   ...+..||+++++++.+ ...+..    +..
T Consensus        40 ~~I~r~d~~~g~~~~~-~~~~~--------~~~i~~~~dg~l~va~---~~gl~~~d~~tg~~~~l-~~~~~~~~~~~~n  106 (295)
T d2ghsa1          40 RELHELHLASGRKTVH-ALPFM--------GSALAKISDSKQLIAS---DDGLFLRDTATGVLTLH-AELESDLPGNRSN  106 (295)
T ss_dssp             TEEEEEETTTTEEEEE-ECSSC--------EEEEEEEETTEEEEEE---TTEEEEEETTTCCEEEE-ECSSTTCTTEEEE
T ss_pred             CEEEEEECCCCeEEEE-ECCCC--------cEEEEEecCCCEEEEE---eCccEEeecccceeeEE-eeeecCCCcccce
Confidence            4688999988874433 23211        0111123567777653   35799999999999887 333222    222


Q ss_pred             eeEEEECCEEEEEEeecCC---ceEEEEeecCCCCCCeEEEEe-echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCc
Q 046684          246 ATLVSRNQKLTLIGGTCGG---DACVWELSEGGDDDIWCLIEK-VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGL  321 (373)
Q Consensus       246 ~~~~~~~g~l~~~gg~~~~---~~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  321 (373)
                      ...+.-+|.|++.......   ...+|.+..    ++-+++.. +..+.            ...+...++.+|+.+...+
T Consensus       107 d~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~----g~~~~~~~~~~~~N------------g~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1         107 DGRMHPSGALWIGTMGRKAETGAGSIYHVAK----GKVTKLFADISIPN------------SICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             EEEECTTSCEEEEEEETTCCTTCEEEEEEET----TEEEEEEEEESSEE------------EEEECTTSCEEEEEETTTC
T ss_pred             eeEECCCCCEEEEeccccccccceeEeeecC----CcEEEEeeccCCcc------------eeeecCCCceEEEeecccc
Confidence            2334447888886543322   246777765    44444332 22211            2334444667888888778


Q ss_pred             cEEEEEcc
Q 046684          322 GMIIWRED  329 (373)
Q Consensus       322 ~~~~yd~~  329 (373)
                      .++.|+.+
T Consensus       171 ~I~~~~~d  178 (295)
T d2ghsa1         171 RLMRVPLD  178 (295)
T ss_dssp             EEEEEEBC
T ss_pred             eeeEeeec
Confidence            89998875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=1.4  Score=35.24  Aligned_cols=93  Identities=10%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV  249 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~  249 (373)
                      ..+.+||..+++-.......         ......+..++.+.+.+ .....|..||..+.+-...-.............
T Consensus       197 g~i~~~d~~~~~~~~~~~~~---------~~~v~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  266 (342)
T d2ovrb2         197 TSIRVWDVETGNCIHTLTGH---------QSLTSGMELKDNILVSG-NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL  266 (342)
T ss_dssp             SCEEEEETTTCCEEEEECCC---------CSCEEEEEEETTEEEEE-ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             CeEEEeecccceeeeEeccc---------ccceeEEecCCCEEEEE-cCCCEEEEEecccccccccccccceeeeceeec
Confidence            35788888776532211110         01112233445544443 345779999998765443312222223333445


Q ss_pred             EECCEEEEEEeecCCceEEEEeec
Q 046684          250 SRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       250 ~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      ..++.+++.++ .+..+.+|+++.
T Consensus       267 ~~~~~~~~s~s-~Dg~i~iwd~~t  289 (342)
T d2ovrb2         267 QFNKNFVITSS-DDGTVKLWDLKT  289 (342)
T ss_dssp             EECSSEEEEEE-TTSEEEEEETTT
T ss_pred             ccCCCeeEEEc-CCCEEEEEECCC
Confidence            55777666665 445589999865

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.57  E-value=0.69  Score=41.40  Aligned_cols=116  Identities=13%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCC--------CCCCCeEEEEEcCCCCCCCCCceEEEEEeccC
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNV--------SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMS  159 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~--------~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~  159 (373)
                      -...||.||+...   ...++..|..|++  |+.-+..+.        .......+...           ++||+.... 
T Consensus        62 Piv~~g~vyv~t~---~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~-  126 (560)
T d1kv9a2          62 PLFHDGVIYTSMS---WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG-----------DKVYVGTLD-  126 (560)
T ss_dssp             CEEETTEEEEEEG---GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB-----------TEEEEECTT-
T ss_pred             CEEECCEEEEECC---CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeC-----------CeEEEEeCC-
Confidence            4578999999876   5788999999986  764332211        11122333333           677765422 


Q ss_pred             CCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCCc--
Q 046684          160 DEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESNT--  231 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~~--  231 (373)
                                ..+..+|..+++  |+....-+.     .........++.+|.+++-...    ....|.+||.++++  
T Consensus       127 ----------g~l~Alda~tG~~~w~~~~~~~~-----~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~  191 (560)
T d1kv9a2         127 ----------GRLIALDAKTGKAIWSQQTTDPA-----KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (560)
T ss_dssp             ----------SEEEEEETTTCCEEEEEECSCTT-----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             ----------CEEEEEECCCCcEEeccCccCcc-----cceeeeeeeeeecCcccccccceeccccceEEEEECCCceEE
Confidence                      357888888876  766543321     1122334567888998875421    24679999999884  


Q ss_pred             EEec
Q 046684          232 WREL  235 (373)
Q Consensus       232 w~~~  235 (373)
                      |+.-
T Consensus       192 W~~~  195 (560)
T d1kv9a2         192 WRFY  195 (560)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            6543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=93.46  E-value=1.6  Score=35.54  Aligned_cols=204  Identities=8%  Similarity=-0.025  Sum_probs=97.9

Q ss_pred             eeCcEEEEeeCCC-----CceEEEEEcCcccceeccCCCCC-CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC
Q 046684           92 SIGSFLLLRPINS-----TILQLVLCNPFTRQFRYLPLLNV-SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG  165 (373)
Q Consensus        92 ~~~g~l~~~gg~~-----~~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~  165 (373)
                      .-+|.+|+.....     ...+++.+||.++++........ ........+..++.+       +.+|+....       
T Consensus        26 d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-------~~l~vad~~-------   91 (314)
T d1pjxa_          26 DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-------NQLFVADMR-------   91 (314)
T ss_dssp             CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-------SEEEEEETT-------
T ss_pred             eCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-------CEEEEEECC-------
Confidence            3477788765431     13469999999998765432211 111111222222211       567776532       


Q ss_pred             CcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcC--------------CceEEEEEECCCC
Q 046684          166 ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSA--------------RAYSVIGFDIESN  230 (373)
Q Consensus       166 ~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~--------------~~~~i~~yd~~~~  230 (373)
                          ..+.++++.++....+......    .........++ -+|.+|+....              ....++.++++. 
T Consensus        92 ----~~i~~~~~~g~~~~~~~~~~~g----~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-  162 (314)
T d1pjxa_          92 ----LGLLVVQTDGTFEEIAKKDSEG----RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-  162 (314)
T ss_dssp             ----TEEEEEETTSCEEECCSBCTTS----CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-
T ss_pred             ----CeEEEEeCCCcEEEEEeccccc----cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-
Confidence                2478888877654433322111    11111122222 35889886411              134688888754 


Q ss_pred             cEEecccCCCCCCCceeEEE-ECC-----EEEEEEeecCCceEEEEeecCCCCCCeEEE-EeechhhhhhhcCCCCCCCc
Q 046684          231 TWRELSAPMADRLEFATLVS-RNQ-----KLTLIGGTCGGDACVWELSEGGDDDIWCLI-EKVPIEMGMRLSGGKASWGG  303 (373)
Q Consensus       231 ~w~~~~~~~p~~~~~~~~~~-~~g-----~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v-~~~p~~~~~~~~~~~~~~~~  303 (373)
                      +...+...+..+   .+++. .++     .||+... ....+..|+++.. ..-.+.++ ..++.....  .+      .
T Consensus       163 ~~~~~~~~~~~p---NGi~~~~d~d~~~~~lyv~d~-~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~~--~p------d  229 (314)
T d1pjxa_         163 QMIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGP-AKIENKKVWGHIPGTHEG--GA------D  229 (314)
T ss_dssp             CEEEEEEEESSE---EEEEEEECTTSCEEEEEEEET-TTTEEEEEEEEET-TEEEEEEEEEECCCCSSC--EE------E
T ss_pred             ceeEeeCCccee---eeeEECCCCCcceeEEEEEee-cccceEEeeccCc-cccceeeEEEEccccccc--cc------e
Confidence            344431222111   12322 222     4666543 2223444555431 11122222 223322110  00      1


Q ss_pred             eEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          304 TRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       304 ~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      -.++..+|.||+.....+.|.+||++  .+
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~--~g  257 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPD--GG  257 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTT--CB
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCC--CC
Confidence            23444578899988777789999999  77

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.21  E-value=1.5  Score=34.62  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=36.8

Q ss_pred             CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE-EecCCEEEEEEcCCccEEEEEccc
Q 046684          252 NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC-AAGNGAICLYREVGLGMIIWREDE  330 (373)
Q Consensus       252 ~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~yd~~~  330 (373)
                      +++++++++ .+..+.+|+++.    .+...+..+.....           ...+ ...++..++.++..+.+.+||.. 
T Consensus       147 ~~~~l~~g~-~dg~i~~~d~~~----~~~~~~~~~~~~~~-----------i~~~~~~~~~~~l~~~~~d~~i~~~~~~-  209 (299)
T d1nr0a2         147 DKQFVAVGG-QDSKVHVYKLSG----ASVSEVKTIVHPAE-----------ITSVAFSNNGAFLVATDQSRKVIPYSVA-  209 (299)
T ss_dssp             TSCEEEEEE-TTSEEEEEEEET----TEEEEEEEEECSSC-----------EEEEEECTTSSEEEEEETTSCEEEEEGG-
T ss_pred             ccccccccc-cccccccccccc----cccccccccccccc-----------cccccccccccccccccccccccccccc-
Confidence            556665554 445589999975    44444333221110           1222 23355566667777789999998 


Q ss_pred             cCC
Q 046684          331 DKR  333 (373)
Q Consensus       331 ~~~  333 (373)
                       ++
T Consensus       210 -~~  211 (299)
T d1nr0a2         210 -NN  211 (299)
T ss_dssp             -GT
T ss_pred             -cc
Confidence             76

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.14  E-value=1.9  Score=36.76  Aligned_cols=159  Identities=4%  Similarity=-0.089  Sum_probs=76.4

Q ss_pred             EEEEEecCCCeeEEEEeCCCCCcccc-CCCCCCCCceeEEeeCcE-EEEeeCCCCceEEEEEcCcccceeccCCCCCCCC
Q 046684           53 FLALPTRNRGLCCYVHNPVSDKWHVL-SLDFLPYPVRPVSSIGSF-LLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT  130 (373)
Q Consensus        53 l~~~~~~~~~~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~g~-l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~  130 (373)
                      ++++..+.. ..+.++|..+.+-... +...  .......+.+|. +|+.+.   ...+.+||..|++-..+..++....
T Consensus        33 ~~~v~~~d~-g~v~v~D~~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~---dg~v~~~d~~t~~~~~~~~i~~~~~  106 (432)
T d1qksa2          33 LFSVTLRDA-GQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIGSE  106 (432)
T ss_dssp             EEEEEETTT-TEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECCSE
T ss_pred             EEEEEEcCC-CEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEcC---CCCEEEEEeeCCCceEEEEEecCCC
Confidence            444444444 5677799988765433 3221  122223344554 555443   4678999998877544443333222


Q ss_pred             CCeEEEEEcCCCCCCCCCce-EEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccc--cccceeccCCceEE-
Q 046684          131 NPAVGIVMEGPAQHGPFPNF-RIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEF--AVRLTVWTPNESVC-  206 (373)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~-kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~--~~~~~~~~~~~~~~-  206 (373)
                      ...++ .....+.+     + .+|+.+...          ..+.++|.++++-..........  ............++ 
T Consensus       107 ~~~~~-~s~~~SpD-----G~~l~vs~~~~----------~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (432)
T d1qksa2         107 ARSIE-TSKMEGWE-----DKYAIAGAYWP----------PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  170 (432)
T ss_dssp             EEEEE-ECCSTTCT-----TTEEEEEEEET----------TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             CCCeE-EecccCCC-----CCEEEEEcCCC----------CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEE
Confidence            22222 21111222     4 466655332          56889999887754432221000  00000001111112 


Q ss_pred             -ECCEEEEEEcCCceEEEEEECCCCcEE
Q 046684          207 -TRGMLYWITSARAYSVIGFDIESNTWR  233 (373)
Q Consensus       207 -~~g~ly~~gg~~~~~i~~yd~~~~~w~  233 (373)
                       .+|...++.......+..+|..+.+-.
T Consensus       171 s~dg~~~~vs~~~~~~i~~~d~~~~~~~  198 (432)
T d1qksa2         171 SHYRPEFIVNVKETGKILLVDYTDLNNL  198 (432)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             CCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence             234433333455678888888765543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.98  E-value=2  Score=35.40  Aligned_cols=75  Identities=4%  Similarity=-0.114  Sum_probs=41.6

Q ss_pred             CCEEEEEEeecCC-----ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcCCccEEE
Q 046684          252 NQKLTLIGGTCGG-----DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREVGLGMII  325 (373)
Q Consensus       252 ~g~l~~~gg~~~~-----~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~  325 (373)
                      ++.+|+.......     ...+|.++.    ...+.+..++......         ...+...|. .+|+.+...+.+.+
T Consensus       275 ~~~~~v~~~~~~~~~~~~~~~v~v~D~----~t~~~~~~~~~~~~~~---------~~a~spDG~~~ly~s~~~~~~v~v  341 (368)
T d1mdah_         275 TDGIMILTVEHSRSCLAAAENTSSVTA----SVGQTSGPISNGHDSD---------AIIAAQDGASDNYANSAGTEVLDI  341 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEES----SSCCEEECCEEEEEEC---------EEEECCSSSCEEEEEETTTTEEEE
T ss_pred             CCEEEEEecCCCceeecCCceEEEEEC----CCCcEeEEecCCCcee---------EEEECCCCCEEEEEEeCCCCeEEE
Confidence            4566666433221     134555544    4456666665432110         122223343 47888877778999


Q ss_pred             EEccccCCcccEEEeccccc
Q 046684          326 WREDEDKRKWEWVWVGGCCL  345 (373)
Q Consensus       326 yd~~~~~~~~~W~~~~~~~~  345 (373)
                      ||.+  ++    +.+..+++
T Consensus       342 ~D~~--tg----k~~~~i~~  355 (368)
T d1mdah_         342 YDAA--SD----QDQSSVEL  355 (368)
T ss_dssp             EESS--SC----EEEEECCC
T ss_pred             EECC--CC----CEEEEEEC
Confidence            9999  88    45555554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.78  E-value=1.9  Score=34.48  Aligned_cols=102  Identities=12%  Similarity=0.017  Sum_probs=52.6

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee-EEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT-LVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~-~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      +|.+.+.+ .....+..+|......... ........... +... ++.+++.++ .+..+.+|++..      ++.+..
T Consensus       237 ~~~~l~s~-s~d~~i~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~------~~~~~~  307 (340)
T d1tbga_         237 NGNAFATG-SDDATCRLFDLRADQELMT-YSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK------ADRAGV  307 (340)
T ss_dssp             TSSEEEEE-ETTSCEEEEETTTTEEEEE-ECCTTCCSCEEEEEECSSSCEEEEEE-TTSCEEEEETTT------CCEEEE
T ss_pred             CCCEEEEE-eCCCeEEEEeecccccccc-cccccccCceEEEEECCCCCEEEEEE-CCCEEEEEECCC------CcEEEE
Confidence            45555553 3456788899887765443 22222222222 2222 556555554 444589998743      455555


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR  327 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd  327 (373)
                      +..-...         ....+...++..++.++.++.|.++|
T Consensus       308 ~~~H~~~---------V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         308 LAGHDNR---------VSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECCCSSC---------EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCC---------EEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            5421100         01122233556666677766777775

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.58  E-value=2  Score=34.29  Aligned_cols=57  Identities=14%  Similarity=-0.021  Sum_probs=34.0

Q ss_pred             eeEEEEeCCCCCcc-ccCCCCCCC-CceeEEeeC-cEEEEeeCCCCceEEEEEcCcccceec
Q 046684           63 LCCYVHNPVSDKWH-VLSLDFLPY-PVRPVSSIG-SFLLLRPINSTILQLVLCNPFTRQFRY  121 (373)
Q Consensus        63 ~~~~~~d~~~~~w~-~~~~~~~~~-~~~~~~~~~-g~l~~~gg~~~~~~~~v~np~t~~w~~  121 (373)
                      ..+..+|..+.+-. .++...... ......+.+ ..+|+.+..  ...+.+||..|++...
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~--~~~v~v~D~~t~~~~~   70 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKIDLVTGETLG   70 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT--TTEEEEEETTTCCEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECC--CCeEEEEECCCCcEEE
Confidence            56777999887533 344332222 222233444 467776653  4679999999987644

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.33  E-value=0.92  Score=40.68  Aligned_cols=115  Identities=12%  Similarity=0.145  Sum_probs=68.5

Q ss_pred             EeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCC--------CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCC
Q 046684           91 SSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNV--------SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSD  160 (373)
Q Consensus        91 ~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~--------~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~  160 (373)
                      ...+|.||+...   ...++.+|+.|++  |+.-+..+.        ........+..           +++|+....  
T Consensus        74 iv~~g~vyv~t~---~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~-----------~~v~~~t~~--  137 (573)
T d1kb0a2          74 VVVDGIMYVSAS---WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK-----------GKVYVGAWD--  137 (573)
T ss_dssp             EEETTEEEEECG---GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET-----------TEEEEECTT--
T ss_pred             EEECCEEEEECC---CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEEC-----------CcEEEEecc--
Confidence            467999999876   5678899999886  764332211        11112233333           677764321  


Q ss_pred             CCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEc----CCceEEEEEECCCCc--E
Q 046684          161 EPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS----ARAYSVIGFDIESNT--W  232 (373)
Q Consensus       161 ~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg----~~~~~i~~yd~~~~~--w  232 (373)
                               ..+..+|..+++  |+.-......    .........++++|.+++-..    .....|.+||..+++  |
T Consensus       138 ---------g~l~alda~tG~~~W~~~~~~~~~----~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         138 ---------GRLIALDAATGKEVWHQNTFEGQK----GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             ---------SEEEEEETTTCCEEEEEETTTTCC----SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ---------cceeeeccccccceecccCccCCc----ceEEeecceEEEeccEEEeeccccccccceEEEEecCCcccee
Confidence                     357888888876  8654321100    111223445788999887531    124689999999875  7


Q ss_pred             Ee
Q 046684          233 RE  234 (373)
Q Consensus       233 ~~  234 (373)
                      +.
T Consensus       205 ~~  206 (573)
T d1kb0a2         205 RW  206 (573)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.14  E-value=2.9  Score=35.25  Aligned_cols=115  Identities=8%  Similarity=-0.017  Sum_probs=55.0

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      .+++++....  ...+.++|..|++-..  .++....-.+++  ..+        |++.+++++.+          ..+.
T Consensus        31 ~~~~~V~~~~--dg~v~vwD~~t~~~~~--~l~~g~~~~~va--fSP--------DGk~l~~~~~d----------~~v~   86 (426)
T d1hzua2          31 PNLFSVTLRD--AGQIALVDGDSKKIVK--VIDTGYAVHISR--MSA--------SGRYLLVIGRD----------ARID   86 (426)
T ss_dssp             GGEEEEEETT--TTEEEEEETTTCSEEE--EEECCSSEEEEE--ECT--------TSCEEEEEETT----------SEEE
T ss_pred             CeEEEEEEcC--CCEEEEEECCCCcEEE--EEeCCCCeeEEE--ECC--------CCCEEEEEeCC----------CCEE
Confidence            4555565542  5789999999987533  222222212222  221        14443344433          3688


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEe
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRE  234 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~  234 (373)
                      ++|..+++-.....++.. .. +..........-+|+..++++.....+..+|.+++.-..
T Consensus        87 vwd~~t~~~~~~~~i~~~-~~-~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~  145 (426)
T d1hzua2          87 MIDLWAKEPTKVAEIKIG-IE-ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ  145 (426)
T ss_dssp             EEETTSSSCEEEEEEECC-SE-EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred             EEEccCCceeEEEEEeCC-CC-CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeE
Confidence            999988764333222110 00 000000000012455333334456778888988775443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.71  E-value=1.8  Score=34.96  Aligned_cols=141  Identities=6%  Similarity=-0.149  Sum_probs=75.0

Q ss_pred             eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCC
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPA  142 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~  142 (373)
                      ..++++|...+...+++.  ..+.....-+.+|..+++.+......+++||..+++.+++......    -..+...+  
T Consensus        24 g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~----v~~~~~sp--   95 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN----VFAMGVDR--   95 (360)
T ss_dssp             TEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS----EEEEEECT--
T ss_pred             CeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce----EEeeeecc--
Confidence            477889988877766532  2222223335577655554433345689999999887765432221    11122211  


Q ss_pred             CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEE------
Q 046684          143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWIT------  215 (373)
Q Consensus       143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~g------  215 (373)
                            +++.++.++..          ..+.+++..++.-........       . ....+++ -+|+..++.      
T Consensus        96 ------dg~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~spdg~~la~~~~~~~~  151 (360)
T d1k32a3          96 ------NGKFAVVANDR----------FEIMTVDLETGKPTVIERSRE-------A-MITDFTISDNSRFIAYGFPLKHG  151 (360)
T ss_dssp             ------TSSEEEEEETT----------SEEEEEETTTCCEEEEEECSS-------S-CCCCEEECTTSCEEEEEEEECSS
T ss_pred             ------cccccceeccc----------cccccccccccceeeeeeccc-------c-cccchhhccceeeeeeecccccc
Confidence                  14455555443          357888888877544433211       1 1111222 245544433      


Q ss_pred             ---cCCceEEEEEECCCCcEEec
Q 046684          216 ---SARAYSVIGFDIESNTWREL  235 (373)
Q Consensus       216 ---g~~~~~i~~yd~~~~~w~~~  235 (373)
                         +.....+..+|..+++-..+
T Consensus       152 ~~~~~~~~~~~v~d~~~~~~~~~  174 (360)
T d1k32a3         152 ETDGYVMQAIHVYDMEGRKIFAA  174 (360)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEEC
T ss_pred             ceeeccccceeeeccccCceeee
Confidence               12345678899988765554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=91.46  E-value=2.9  Score=33.83  Aligned_cols=226  Identities=8%  Similarity=-0.037  Sum_probs=108.9

Q ss_pred             eeEEEEeCCCCCccccCCCCCC---CCceeEE--eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCC--CCeEE
Q 046684           63 LCCYVHNPVSDKWHVLSLDFLP---YPVRPVS--SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT--NPAVG  135 (373)
Q Consensus        63 ~~~~~~d~~~~~w~~~~~~~~~---~~~~~~~--~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~--~~~~~  135 (373)
                      ..++.+|+.++.+.....+...   .....++  ..++++|+.+.   ...+.++++.++....+........  .+.-.
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~---~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl  122 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDC  122 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTEEEEEETTSCEEECCSBCTTSCBCBCCCEE
T ss_pred             CEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---CCeEEEEeCCCcEEEEEeccccccccCCCcEE
Confidence            4688899988876554222111   1112222  23567888776   4568899998776544332222211  11222


Q ss_pred             EEEcCCCCCCCCCceEEEEEeccCCCC-----CCCCcccceEEEEECCCCceeeecC-CCccccccceeccCCceEE-EC
Q 046684          136 IVMEGPAQHGPFPNFRIYVAGGMSDEP-----RGGATYESMVEMYDSRHDAWQIIGS-MPVEFAVRLTVWTPNESVC-TR  208 (373)
Q Consensus       136 ~~~~~~~~~~~~~~~kl~~~gg~~~~~-----~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~~~~~~~~~~~~~~~~-~~  208 (373)
                      .++ +        ++.+|+........     .........++.+++.. +...+.. +.          .....++ -+
T Consensus       123 ~~d-~--------~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~----------~pNGi~~~~d  182 (314)
T d1pjxa_         123 AFD-Y--------EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQ----------FPNGIAVRHM  182 (314)
T ss_dssp             EEC-T--------TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEES----------SEEEEEEEEC
T ss_pred             EEC-C--------CCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCcc----------eeeeeEECCC
Confidence            222 1        16788753111000     01112234677777643 4444322 11          0011122 12


Q ss_pred             C-----EEEEEEcCCceEEEEEECCCCc---EEecccCCCCCCC-c-eeEEE-ECCEEEEEEeecCCceEEEEeecCCCC
Q 046684          209 G-----MLYWITSARAYSVIGFDIESNT---WRELSAPMADRLE-F-ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDD  277 (373)
Q Consensus       209 g-----~ly~~gg~~~~~i~~yd~~~~~---w~~~~~~~p~~~~-~-~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~  277 (373)
                      +     .||+. ......|++||+..+.   ...+-...+.... . .+++. .+|.||+... ....+.+|+++    +
T Consensus       183 ~d~~~~~lyv~-d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~-~~g~I~~~dp~----~  256 (314)
T d1pjxa_         183 NDGRPYQLIVA-ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW-GSSHIEVFGPD----G  256 (314)
T ss_dssp             TTSCEEEEEEE-ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE-TTTEEEEECTT----C
T ss_pred             CCcceeEEEEE-eecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc-CCCEEEEEeCC----C
Confidence            2     57777 3456789999876442   1111012222111 1 13333 4789998753 33334455443    3


Q ss_pred             CCeEEEEeechhhhhhhcCCCCCCCceEEEec--CCEEEEEEcCCccEEEEEcc
Q 046684          278 DIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG--NGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       278 ~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~yd~~  329 (373)
                      ..-...-.+|...            +..++..  ++.||+.....+.++.+|..
T Consensus       257 g~~~~~i~~p~~~------------~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         257 GQPKMRIRCPFEK------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             BSCSEEEECSSSC------------EEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEEECCCCC------------EEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            4433322344321            2223332  34799988777788888876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.32  E-value=1.8  Score=33.98  Aligned_cols=146  Identities=10%  Similarity=0.059  Sum_probs=67.3

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIE  228 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~  228 (373)
                      +++++.|+.+          ..+.+||..+++....-...       . ..-..++.. ++.+.+.+ .....+..++..
T Consensus        29 ~~~l~s~s~D----------g~i~iWd~~~~~~~~~~~~h-------~-~~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~   89 (317)
T d1vyhc1          29 FSVMVSASED----------ATIKVWDYETGDFERTLKGH-------T-DSVQDISFDHSGKLLASC-SADMTIKLWDFQ   89 (317)
T ss_dssp             SSEEEEEESS----------SCEEEEETTTCCCCEEECCC-------S-SCEEEEEECTTSSEEEEE-ETTSCCCEEETT
T ss_pred             CCEEEEEeCC----------CeEEEEECCCCCEEEEEeCC-------C-CcEEEEeeeccccccccc-cccccccccccc
Confidence            5566666554          35889998876532211110       0 000111111 33444332 334445566666


Q ss_pred             CCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe
Q 046684          229 SNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA  308 (373)
Q Consensus       229 ~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~  308 (373)
                      ..+.... ...............++...+.+ ..+..+.+|++..    ..............           ......
T Consensus        90 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~  152 (317)
T d1vyhc1          90 GFECIRT-MHGHDHNVSSVSIMPNGDHIVSA-SRDKTIKMWEVQT----GYCVKTFTGHREWV-----------RMVRPN  152 (317)
T ss_dssp             SSCEEEC-CCCCSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTT----CCEEEEEECCSSCE-----------EEEEEC
T ss_pred             ccccccc-cccccccceeeeccCCCceEEee-ccCcceeEeeccc----ceeeeEEccCCCcc-----------eeeecc
Confidence            5554443 11111111111122244444444 3444578998865    44333222111110           122233


Q ss_pred             cCCEEEEEEcCCccEEEEEccccCC
Q 046684          309 GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .++.+++.++..+.+.+||..  ++
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~--~~  175 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVA--TK  175 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETT--TC
T ss_pred             cCCCEEEEEeCCCeEEEEeec--cc
Confidence            356677777777789999988  66

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.20  E-value=2.9  Score=33.33  Aligned_cols=103  Identities=7%  Similarity=-0.004  Sum_probs=52.5

Q ss_pred             CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684           94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE  173 (373)
Q Consensus        94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~  173 (373)
                      +..++..+.   ...+.+||..+++....  +.............           .+.++.|+.+          ..+.
T Consensus       213 ~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~h~~~v~~~~~~-----------~~~l~~~~~d----------g~i~  266 (355)
T d1nexb2         213 RKRCISASM---DTTIRIWDLENGELMYT--LQGHTALVGLLRLS-----------DKFLVSAAAD----------GSIR  266 (355)
T ss_dssp             TTEEEEEET---TSCEEEEETTTCCEEEE--ECCCSSCCCEEEEC-----------SSEEEEECTT----------SEEE
T ss_pred             ceeeecccc---cceEEeeeccccccccc--cccccccccccccc-----------cceeeeeecc----------cccc
Confidence            444444443   45688999888764331  11111111222222           4455566554          3578


Q ss_pred             EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcE
Q 046684          174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTW  232 (373)
Q Consensus       174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w  232 (373)
                      +||..+..-.....        ............++.+.+.|.  .+.|..||+++++.
T Consensus       267 iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~g~--d~~i~vwd~~tg~~  315 (355)
T d1nexb2         267 GWDANDYSRKFSYH--------HTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGKL  315 (355)
T ss_dssp             EEETTTCCEEEEEE--------CTTCCCCCEEEECSSEEEEEE--TTEEEEEETTTCCB
T ss_pred             cccccccceecccc--------cCCceEEEEEcCCCCEEEEEe--CCEEEEEECCCCCE
Confidence            89887654221111        111122223345677665542  46799999988764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.73  E-value=3.1  Score=32.82  Aligned_cols=23  Identities=9%  Similarity=0.007  Sum_probs=19.2

Q ss_pred             cCCEEEEEEcCCccEEEEEccccCC
Q 046684          309 GNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       309 ~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .++.+++.++.++.|.+||.+  ++
T Consensus       261 p~~~~lasg~~Dg~v~vWD~~--~~  283 (342)
T d1yfqa_         261 PRHKFLYTAGSDGIISCWNLQ--TR  283 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETT--TT
T ss_pred             CCccEEEEECCCCEEEEEECC--CC
Confidence            366777888888899999999  87

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.59  E-value=0.95  Score=40.46  Aligned_cols=121  Identities=15%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             CceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCC--------CCCceeEEEECCEEEEEEeecCCceEEEEe
Q 046684          202 NESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMAD--------RLEFATLVSRNQKLTLIGGTCGGDACVWEL  271 (373)
Q Consensus       202 ~~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~--------~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~  271 (373)
                      ...++.+|.||+..  ....++++|.+++  .|+.- ...+.        .......+..++++|+.....    .++.+
T Consensus        60 stPiv~~g~vyv~t--~~~~v~AlDa~tG~~lW~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----~l~Al  132 (560)
T d1kv9a2          60 ATPLFHDGVIYTSM--SWSRVIAVDAASGKELWRYD-PEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDG----RLIAL  132 (560)
T ss_dssp             CCCEEETTEEEEEE--GGGEEEEEETTTCCEEEEEC-CCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTS----EEEEE
T ss_pred             eCCEEECCEEEEEC--CCCeEEEEeCCCCCEEEEEC-CCCCccccccccccccccCcceeCCeEEEEeCCC----EEEEE
Confidence            34589999999875  3578999999987  48743 11111        112234556677777654321    45666


Q ss_pred             ecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC-----CccEEEEEccccCCcccEEEe
Q 046684          272 SEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV-----GLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       272 ~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      +....+..|+....-+.....         ....-...++.+++-...     .+.+..||.+  +++..|+.-
T Consensus       133 da~tG~~~w~~~~~~~~~~~~---------~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~--TG~~~W~~~  195 (560)
T d1kv9a2         133 DAKTGKAIWSQQTTDPAKPYS---------ITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDAD--TGKLAWRFY  195 (560)
T ss_dssp             ETTTCCEEEEEECSCTTSSCB---------CCSCCEEETTEEEECCBCTTTCCBCEEEEEETT--TCCEEEEEE
T ss_pred             ECCCCcEEeccCccCccccee---------eeeeeeeecCcccccccceeccccceEEEEECC--CceEEeeee
Confidence            541122345543222111100         012334457777764321     2469999999  998888864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.55  E-value=3.3  Score=32.92  Aligned_cols=63  Identities=11%  Similarity=0.189  Sum_probs=31.4

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE  273 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~  273 (373)
                      ++.+.+.+ .....+..+|..+.+.... ...............++..++.++ .+..+.+|++..
T Consensus       170 ~~~~~~~~-~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~  232 (355)
T d1nexb2         170 HGNIVVSG-SYDNTLIVWDVAQMKCLYI-LSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLEN  232 (355)
T ss_dssp             ETTEEEEE-ETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTT
T ss_pred             ccceeeee-cccceeeeeecccccceee-eeccccccccccccccceeeeccc-ccceEEeeeccc
Confidence            34444443 3456788899887765443 121111111222233455555544 334467887754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.04  E-value=3.6  Score=32.57  Aligned_cols=105  Identities=13%  Similarity=0.074  Sum_probs=54.2

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee-EEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT-LVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~-~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +.+.+. +.....+..||..+.+-... ..  .+..... ++.. ++.+++.++ .+..+.+|++..    .  ..+...
T Consensus       196 ~~~~~~-~~~d~~v~i~d~~~~~~~~~-~~--~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~----~--~~~~~~  264 (340)
T d1tbga_         196 TRLFVS-GACDASAKLWDVREGMCRQT-FT--GHESDINAICFFPNGNAFATGS-DDATCRLFDLRA----D--QELMTY  264 (340)
T ss_dssp             SSEEEE-EETTTEEEEEETTTTEEEEE-EC--CCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT----T--EEEEEE
T ss_pred             cceeEE-eecCceEEEEECCCCcEEEE-Ee--CCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecc----c--cccccc
Confidence            344444 34566788889887654332 11  1111122 2222 566666654 344578998854    3  333322


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .......   .    ........++.+++.++..+.+.+||..  +.
T Consensus       265 ~~~~~~~---~----i~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~  302 (340)
T d1tbga_         265 SHDNIIC---G----ITSVSFSKSGRLLLAGYDDFNCNVWDAL--KA  302 (340)
T ss_dssp             CCTTCCS---C----EEEEEECSSSCEEEEEETTSCEEEEETT--TC
T ss_pred             ccccccC---c----eEEEEECCCCCEEEEEECCCEEEEEECC--CC
Confidence            2111100   0    0122233356677778777889999998  66

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.01  E-value=1.1  Score=37.65  Aligned_cols=113  Identities=11%  Similarity=-0.054  Sum_probs=59.4

Q ss_pred             EEcCCceEEEEEECCCCcEEecccCC----CCCCCceeEEE--ECCEEEEEEeecCCc--eEEEEeecCCCCCCeEEEEe
Q 046684          214 ITSARAYSVIGFDIESNTWRELSAPM----ADRLEFATLVS--RNQKLTLIGGTCGGD--ACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       214 ~gg~~~~~i~~yd~~~~~w~~~~~~~----p~~~~~~~~~~--~~g~l~~~gg~~~~~--~~i~~~~~~~~~~~W~~v~~  285 (373)
                      +.+...+.|..||+.+++.... ...    ..+......+.  -+|++++.++.++..  +.+|+++.    ......-.
T Consensus       199 asgs~Dg~i~iwd~~~~~~~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~----g~~~~~l~  273 (393)
T d1sq9a_         199 ATGFNNGTVQISELSTLRPLYN-FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF----GERIGSLS  273 (393)
T ss_dssp             EEECTTSEEEEEETTTTEEEEE-EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT----CCEEEEEC
T ss_pred             EEEeCCCcEEEEeecccccccc-cccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc----ceeeeeec
Confidence            3355678899999998764332 111    11111122222  278888888776653  78998865    33222211


Q ss_pred             echh--hhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          286 VPIE--MGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       286 ~p~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ....  .......++.......++..++.+++.++.++.|.++|.+  ++
T Consensus       274 ~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~--~g  321 (393)
T d1sq9a_         274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK--TK  321 (393)
T ss_dssp             BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT--TT
T ss_pred             cccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC--CC
Confidence            1111  1101111111111122333467788888888899999999  88

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.63  E-value=3.4  Score=31.69  Aligned_cols=69  Identities=12%  Similarity=0.076  Sum_probs=36.8

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV  172 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~  172 (373)
                      .+|..++.|+.  ...+.+||..+++....  +.....  .+..+..    +     +++++.|+.+          ..+
T Consensus        23 ~d~~~l~sgs~--Dg~i~vWd~~~~~~~~~--l~~H~~--~V~~v~~----~-----~~~l~s~s~D----------~~i   77 (293)
T d1p22a2          23 YDDQKIVSGLR--DNTIKIWDKNTLECKRI--LTGHTG--SVLCLQY----D-----ERVIITGSSD----------STV   77 (293)
T ss_dssp             CCSSEEEEEES--SSCEEEEESSSCCEEEE--ECCCSS--CEEEEEC----C-----SSEEEEEETT----------SCE
T ss_pred             EcCCEEEEEeC--CCeEEEEECCCCcEEEE--EecCCC--CEeeeec----c-----cceeeccccc----------ccc
Confidence            35555555543  46788999988765431  111111  1222221    1     4556666554          357


Q ss_pred             EEEECCCCceeeec
Q 046684          173 EMYDSRHDAWQIIG  186 (373)
Q Consensus       173 ~~yd~~~~~W~~~~  186 (373)
                      .+++..++......
T Consensus        78 ~~~~~~~~~~~~~~   91 (293)
T d1p22a2          78 RVWDVNTGEMLNTL   91 (293)
T ss_dssp             EEEESSSCCEEEEE
T ss_pred             cccccccccccccc
Confidence            88888877654443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.49  E-value=3.9  Score=32.13  Aligned_cols=147  Identities=9%  Similarity=0.014  Sum_probs=84.4

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEEC
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDI  227 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~  227 (373)
                      .+||..-..          ...+++++.....-+.+.....     .   .....++.  +|.+||........|...++
T Consensus        89 ~~lY~~d~~----------~~~I~v~~~~g~~~~~~~~~~~-----~---~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~  150 (266)
T d1ijqa1          89 SNIYWTDSV----------LGTVSVADTKGVKRKTLFRENG-----S---KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (266)
T ss_dssp             TEEEEEETT----------TTEEEEEETTSSSEEEEEECTT-----C---CEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             ceEEEEecC----------CCEEEeEecCCceEEEEEcCCC-----C---CcceEEEEcccCeEEEeccCCCcceeEecc
Confidence            779986422          2468899887655333221100     0   11122332  68999996445678999999


Q ss_pred             CCCcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceE
Q 046684          228 ESNTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTR  305 (373)
Q Consensus       228 ~~~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~  305 (373)
                      ....-..+ ...... .-.+++.-  +++||.+.... ..++..+++-    ..=..+........          .+..
T Consensus       151 dGs~~~~l-~~~~~~-~p~gl~iD~~~~~lYw~d~~~-~~I~~~~~dG----~~~~~~~~~~~~~~----------~p~~  213 (266)
T d1ijqa1         151 NGVDIYSL-VTENIQ-WPNGITLDLLSGRLYWVDSKL-HSISSIDVNG----GNRKTILEDEKRLA----------HPFS  213 (266)
T ss_dssp             TSCCEEEE-ECSSCS-CEEEEEEETTTTEEEEEETTT-TEEEEEETTS----CSCEEEEECTTTTS----------SEEE
T ss_pred             CCCceecc-cccccc-eeeEEEeeccccEEEEecCCc-CEEEEEECCC----CCEEEEEeCCCccc----------ccEE
Confidence            87666555 222111 11234443  68899986433 2244444432    22133333222111          1567


Q ss_pred             EEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          306 CAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       306 ~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      ++..++.||..+...+.+...|..  ++
T Consensus       214 lav~~~~ly~td~~~~~I~~~~~~--~g  239 (266)
T d1ijqa1         214 LAVFEDKVFWTDIINEAIFSANRL--TG  239 (266)
T ss_dssp             EEEETTEEEEEETTTTEEEEEETT--TC
T ss_pred             EEEECCEEEEEECCCCeEEEEECC--CC
Confidence            788899999998888889999988  65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.38  E-value=3.8  Score=31.86  Aligned_cols=25  Identities=8%  Similarity=0.070  Sum_probs=16.3

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEE
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWR  233 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~  233 (373)
                      +|...+. +.....+..||..+.+-.
T Consensus       173 ~~~~l~~-g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         173 SETYIAA-GDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             TSSEEEE-EETTSCEEEEETTTTEEE
T ss_pred             Ccccccc-ccccccccceeecccccc
Confidence            4554444 445677899999876543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.80  E-value=4.3  Score=36.07  Aligned_cols=119  Identities=8%  Similarity=0.054  Sum_probs=68.7

Q ss_pred             ceEEECCEEEEEEcCCceEEEEEECC-CC--cEEecccCCCCC--------CCceeEEEECCEEEEEEeecCCceEEEEe
Q 046684          203 ESVCTRGMLYWITSARAYSVIGFDIE-SN--TWRELSAPMADR--------LEFATLVSRNQKLTLIGGTCGGDACVWEL  271 (373)
Q Consensus       203 ~~~~~~g~ly~~gg~~~~~i~~yd~~-~~--~w~~~~~~~p~~--------~~~~~~~~~~g~l~~~gg~~~~~~~i~~~  271 (373)
                      +.++.+|.+|+.. ...+.++++|.. ++  .|+.- ...+..        ....+++..+++||+....    -.++.+
T Consensus        57 tP~v~~g~vyv~t-~~~~~v~Alda~~tG~~~W~~~-~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~----g~l~al  130 (571)
T d2ad6a1          57 APLVIGDMMYVHS-AFPNNTYALNLNDPGKIVWQHK-PKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN----GHLLAL  130 (571)
T ss_dssp             CCEEETTEEEEEC-STTTCEEEEETTCTTSEEEEEC-CCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT----SEEEEE
T ss_pred             CCEEECCEEEEec-CCCCeEEEEeCCCCCceEEEec-CCCCcccccccccCcCCCcceeeCCeEEEEeCC----CcEEee
Confidence            3478999999983 234679999974 44  58754 121111        1123466778888875422    157777


Q ss_pred             ecCCCCC--CeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc-----CCccEEEEEccccCCcccEEEe
Q 046684          272 SEGGDDD--IWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE-----VGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       272 ~~~~~~~--~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      +.  ++.  .|+.-  +.......       .....-+..+|.|++-..     ..+.+..||.+  +++..|+.-
T Consensus       131 da--~tG~~~w~~~--~~~~~~~~-------~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~--TG~~~W~~~  193 (571)
T d2ad6a1         131 DA--KTGKINWEVE--VCDPKVGS-------TLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLK--TGELKWRAF  193 (571)
T ss_dssp             ET--TTCCEEEEEE--CCCGGGTC-------BCCSCCEEETTEEEEECBCGGGTCCCEEEEEETT--TCCEEEEEE
T ss_pred             eh--hhhhhhcccc--cccccccc-------ceeecCeEeCCeEEEeeccccccccCcEEEEECC--CCcEEEEEe
Confidence            76  444  36542  21111100       001233456788877542     23579999999  998888753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=88.63  E-value=4.7  Score=31.98  Aligned_cols=107  Identities=12%  Similarity=0.102  Sum_probs=52.9

Q ss_pred             ceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684          219 AYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG  297 (373)
Q Consensus       219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~  297 (373)
                      ...+..+|..+...... ...+........... ++..++....  ..+.+|++..    .  +.+..++.....     
T Consensus       229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~d~~~----~--~~~~~~~~~~~~-----  294 (346)
T d1jmxb_         229 LYGYLSVDLKTGKTHTQ-EFADLTELYFTGLRSPKDPNQIYGVL--NRLAKYDLKQ----R--KLIKAANLDHTY-----  294 (346)
T ss_dssp             EEEEEEEETTTCCEEEE-EEEECSSCEEEEEECSSCTTEEEEEE--SEEEEEETTT----T--EEEEEEECSSCC-----
T ss_pred             CceEEEEECCCCceEEE-EeecccceeEEEEEeCCCCEEEEecC--CeEEEEECCC----C--cEEEEEcCCCCE-----
Confidence            34577778777665444 222222222222222 3333333322  2367777644    4  333333322110     


Q ss_pred             CCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCc
Q 046684          298 KASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQ  350 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~  350 (373)
                          ....+...|..||+ ++..+.+.+||.+  +.    +.+...++++...
T Consensus       295 ----~~va~s~DG~~l~v-~~~d~~v~v~D~~--t~----~~i~~i~~p~g~~  336 (346)
T d1jmxb_         295 ----YCVAFDKKGDKLYL-GGTFNDLAVFNPD--TL----EKVKNIKLPGGDM  336 (346)
T ss_dssp             ----CEEEECSSSSCEEE-ESBSSEEEEEETT--TT----EEEEEEECSSSCC
T ss_pred             ----EEEEEcCCCCEEEE-EeCCCcEEEEECc--cC----CEEEEEECCCCCc
Confidence                12333334455555 5666789999999  76    5566666666543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=88.48  E-value=3  Score=33.24  Aligned_cols=114  Identities=10%  Similarity=0.003  Sum_probs=59.1

Q ss_pred             CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684          208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV  286 (373)
Q Consensus       208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~  286 (373)
                      +|+..+. +...+.|..+|+++++-... .+.+....-..++.. +|+..++.+..+..+.+|+++.      .+.+..+
T Consensus         7 ~~~~l~~-~~~~~~v~v~D~~t~~~~~t-~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t------~~~~~~~   78 (346)
T d1jmxb_           7 GHEYMIV-TNYPNNLHVVDVASDTVYKS-CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT------CKNTFHA   78 (346)
T ss_dssp             TCEEEEE-EETTTEEEEEETTTTEEEEE-EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT------TEEEEEE
T ss_pred             CCcEEEE-EcCCCEEEEEECCCCCEEEE-EEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc------Ceeeeee
Confidence            4555555 45567899999999976543 244443332334433 6665444444445578888744      4555443


Q ss_pred             chhhhhhhcCCCCCCCceEEEecCCEEEEEEc-----------CCccEEEEEccccCC
Q 046684          287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYRE-----------VGLGMIIWREDEDKR  333 (373)
Q Consensus       287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~~yd~~~~~~  333 (373)
                      +.........  .......+...|..+|+.+.           ....+.+||..  ++
T Consensus        79 ~~~~~~~~~~--~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~--~~  132 (346)
T d1jmxb_          79 NLSSVPGEVG--RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA--DG  132 (346)
T ss_dssp             ESCCSTTEEE--ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG--GG
T ss_pred             cccccccccC--CceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc--cc
Confidence            3221100000  00112334445667777652           23457777777  65

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.17  E-value=3.9  Score=30.42  Aligned_cols=115  Identities=11%  Similarity=0.026  Sum_probs=60.8

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccce---eccCCC--CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQF---RYLPLL--NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT  167 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w---~~lp~~--~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~  167 (373)
                      .++.+|++-|    .++++|+..+-+.   +.+...  +.......+++...   .+     +++|++-|..        
T Consensus        63 ~~~~~yffkg----~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~---~~-----~~~y~Fkg~~--------  122 (192)
T d1pexa_          63 SHDLIFIFRG----RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFE---DT-----GKTLLFSGNQ--------  122 (192)
T ss_dssp             TTTEEEEEET----TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECT---TT-----SEEEEEETTE--------
T ss_pred             CCCEEEEEcC----CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEEC---CC-----CEEEEEeCCE--------
Confidence            4799999887    6789998665332   122221  12222223333321   11     7899987543        


Q ss_pred             ccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEe
Q 046684          168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRE  234 (373)
Q Consensus       168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~  234 (373)
                          .+.||..++.=....+.+..-..+..+..-.++...+|++|++-|   ...+.||..+++-..
T Consensus       123 ----y~~y~~~~~~~~~~~pk~I~~~w~gvp~~vdAa~~~~g~~YfF~g---~~y~r~~~~~~~v~~  182 (192)
T d1pexa_         123 ----VWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNG---PIQFEYSIWSNRIVR  182 (192)
T ss_dssp             ----EEEEETTTTEECSSCCCBHHHHSTTSCSCCSEEEEETTEEEEEET---TEEEEEETTTTEEEE
T ss_pred             ----EEEEcCccccccCCCcEEHhhcCCCCCCCceEEEEeCCEEEEEEC---CEEEEEeCCcCeEcc
Confidence                688887665311110110000000111122344567899999953   578889988766543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=87.96  E-value=5.3  Score=31.76  Aligned_cols=195  Identities=7%  Similarity=-0.103  Sum_probs=96.0

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE  169 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~  169 (373)
                      +..-+|.||+....  ...++.+||... ...+...+..   ....... +   +     +++|+.+...     .   .
T Consensus        34 Av~pdG~l~vt~~~--~~~I~~i~p~g~-~~~~~~~~~~---~~gla~~-~---d-----G~l~v~~~~~-----~---~   90 (302)
T d2p4oa1          34 ASAPDGTIFVTNHE--VGEIVSITPDGN-QQIHATVEGK---VSGLAFT-S---N-----GDLVATGWNA-----D---S   90 (302)
T ss_dssp             EECTTSCEEEEETT--TTEEEEECTTCC-EEEEEECSSE---EEEEEEC-T---T-----SCEEEEEECT-----T---S
T ss_pred             EECCCCCEEEEeCC--CCEEEEEeCCCC-EEEEEcCCCC---cceEEEc-C---C-----CCeEEEecCC-----c---e
Confidence            44557888887654  568999999865 3333333321   1112222 1   1     6788876322     1   1


Q ss_pred             ceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECCCCcEEecccCC---C-----
Q 046684          170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIESNTWRELSAPM---A-----  240 (373)
Q Consensus       170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~---p-----  240 (373)
                      ....-.+...+.-+.+...+..       ......+. -+|.+|+. ......++.+|+.++.-.......   +     
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-------~~~n~i~~~~~g~~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (302)
T d2p4oa1          91 IPVVSLVKSDGTVETLLTLPDA-------IFLNGITPLSDTQYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  162 (302)
T ss_dssp             CEEEEEECTTSCEEEEEECTTC-------SCEEEEEESSSSEEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEEEEecccccceeeccccCCc-------cccceeEEccCCCEEee-ccccccceeeeccCCcceeEecCCccceeeccC
Confidence            1122233333443444333211       11111222 35777776 345678999999877543321110   1     


Q ss_pred             CCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCC--CeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc
Q 046684          241 DRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDD--IWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE  318 (373)
Q Consensus       241 ~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~--~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  318 (373)
                      ......++...++.+|+..... .  .+|.++..+...  .-........+             .-.++..++.||+...
T Consensus       163 ~~~~~ngi~~~~~~l~~~~~~~-~--~i~~~~~~~~~~~~~~~~~~~~~~p-------------dgia~d~dG~l~va~~  226 (302)
T d2p4oa1         163 VFPAANGLKRFGNFLYVSNTEK-M--LLLRIPVDSTDKPGEPEIFVEQTNI-------------DDFAFDVEGNLYGATH  226 (302)
T ss_dssp             CSCSEEEEEEETTEEEEEETTT-T--EEEEEEBCTTSCBCCCEEEEESCCC-------------SSEEEBTTCCEEEECB
T ss_pred             cccccccccccCCceeeecCCC-C--eEEeccccccccccccccccCCCCC-------------cceEECCCCCEEEEEc
Confidence            0112234556678888875432 2  455554310111  11111111100             1344445678999887


Q ss_pred             CCccEEEEEccccCC
Q 046684          319 VGLGMIIWREDEDKR  333 (373)
Q Consensus       319 ~~~~~~~yd~~~~~~  333 (373)
                      ..+.|..|+++  .+
T Consensus       227 ~~~~V~~i~p~--G~  239 (302)
T d2p4oa1         227 IYNSVVRIAPD--RS  239 (302)
T ss_dssp             TTCCEEEECTT--CC
T ss_pred             CCCcEEEECCC--CC
Confidence            77789999998  55

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=87.70  E-value=3.5  Score=32.94  Aligned_cols=107  Identities=10%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE-EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684          207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV-SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK  285 (373)
Q Consensus       207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~-~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~  285 (373)
                      -+|.||+.. .....|+.+|+..+. ..+ ...+..  -.+++ .-+|.||+.+... ..+..+.+..  ...+-+.+..
T Consensus        37 pdG~l~vt~-~~~~~I~~i~p~g~~-~~~-~~~~~~--~~gla~~~dG~l~v~~~~~-~~~~~~~~~~--~~~~~~~~~~  108 (302)
T d2p4oa1          37 PDGTIFVTN-HEVGEIVSITPDGNQ-QIH-ATVEGK--VSGLAFTSNGDLVATGWNA-DSIPVVSLVK--SDGTVETLLT  108 (302)
T ss_dssp             TTSCEEEEE-TTTTEEEEECTTCCE-EEE-EECSSE--EEEEEECTTSCEEEEEECT-TSCEEEEEEC--TTSCEEEEEE
T ss_pred             CCCCEEEEe-CCCCEEEEEeCCCCE-EEE-EcCCCC--cceEEEcCCCCeEEEecCC-ceEEEEEecc--cccceeeccc
Confidence            368998874 456789999988653 333 232221  12232 3378888886433 3345666654  4455556666


Q ss_pred             echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684          286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR  333 (373)
Q Consensus       286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~  333 (373)
                      .+.....          .-.....++.+|+.......++.+|+.  ++
T Consensus       109 ~~~~~~~----------n~i~~~~~g~~~v~~~~~~~i~~~~~~--~~  144 (302)
T d2p4oa1         109 LPDAIFL----------NGITPLSDTQYLTADSYRGAIWLIDVV--QP  144 (302)
T ss_dssp             CTTCSCE----------EEEEESSSSEEEEEETTTTEEEEEETT--TT
T ss_pred             cCCcccc----------ceeEEccCCCEEeeccccccceeeecc--CC
Confidence            5543221          123344578999988777789999998  76

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.18  E-value=4.1  Score=36.15  Aligned_cols=116  Identities=13%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             EEeeCcEEEEeeCCCCceEEEEEcCc-ccc--eeccCCCCCC--------CCCCeEEEEEcCCCCCCCCCceEEEEEecc
Q 046684           90 VSSIGSFLLLRPINSTILQLVLCNPF-TRQ--FRYLPLLNVS--------RTNPAVGIVMEGPAQHGPFPNFRIYVAGGM  158 (373)
Q Consensus        90 ~~~~~g~l~~~gg~~~~~~~~v~np~-t~~--w~~lp~~~~~--------~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~  158 (373)
                      -...+|.||+....  ...++.+|.. |++  |+.-|..+..        .....++...           .+||+.. .
T Consensus        58 P~v~~g~vyv~t~~--~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~-----------~~i~~~~-~  123 (571)
T d2ad6a1          58 PLVIGDMMYVHSAF--PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGA-----------GQIVKKQ-A  123 (571)
T ss_dssp             CEEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEET-----------TEEEEEC-T
T ss_pred             CEEECCEEEEecCC--CCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeC-----------CeEEEEe-C
Confidence            34579999997642  2457777764 554  6543322211        1112233333           7777643 2


Q ss_pred             CCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCC--
Q 046684          159 SDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESN--  230 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~--  230 (373)
                      +          ..+...|.++++  |+.-..-+.     .......+.+++++.+|+-...    ....|.+||..++  
T Consensus       124 ~----------g~l~alda~tG~~~w~~~~~~~~-----~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~  188 (571)
T d2ad6a1         124 N----------GHLLALDAKTGKINWEVEVCDPK-----VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             T----------SEEEEEETTTCCEEEEEECCCGG-----GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             C----------CcEEeeehhhhhhhccccccccc-----cccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcE
Confidence            1          367888998886  765322211     1122344568899999886522    3568999999987  


Q ss_pred             cEEe
Q 046684          231 TWRE  234 (373)
Q Consensus       231 ~w~~  234 (373)
                      .|+.
T Consensus       189 ~W~~  192 (571)
T d2ad6a1         189 KWRA  192 (571)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.86  E-value=6.3  Score=31.47  Aligned_cols=102  Identities=8%  Similarity=0.063  Sum_probs=49.9

Q ss_pred             eEEEEEeccCCCCCCCCcccceEEEEECCCCcee-eecCCCccccccceeccCC--ceEEECCEEEEEEcCCceEEEEEE
Q 046684          150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQ-IIGSMPVEFAVRLTVWTPN--ESVCTRGMLYWITSARAYSVIGFD  226 (373)
Q Consensus       150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~~~~~~~~~~~~--~~~~~~g~ly~~gg~~~~~i~~yd  226 (373)
                      +++++.|+.+          ..+.+||.++++-. .+..-       .......  +....+|...+.++ ....|..||
T Consensus       218 ~~~l~s~~~d----------~~i~iwd~~~~~~~~~l~~~-------~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iwd  279 (325)
T d1pgua1         218 GEFVITVGSD----------RKISCFDGKSGEFLKYIEDD-------QEPVQGGIFALSWLDSQKFATVG-ADATIRVWD  279 (325)
T ss_dssp             CCEEEEEETT----------CCEEEEETTTCCEEEECCBT-------TBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEE
T ss_pred             ceeccccccc----------cceeeeeecccccccccccc-------ccccccceeeeeccCCCEEEEEe-CCCeEEEEE
Confidence            4566666554          35889998877632 22211       1111111  11223566555543 456789999


Q ss_pred             CCCCcEEecccCCCCCC-Cc--eeEEEECCEEEEEEeecCCceEEEEe
Q 046684          227 IESNTWRELSAPMADRL-EF--ATLVSRNQKLTLIGGTCGGDACVWEL  271 (373)
Q Consensus       227 ~~~~~w~~~~~~~p~~~-~~--~~~~~~~g~l~~~gg~~~~~~~i~~~  271 (373)
                      +++++-... ....... ..  ..+...++..++.+ ..+..+.+|++
T Consensus       280 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~vwdl  325 (325)
T d1pgua1         280 VTTSKCVQK-WTLDKQQLGNQQVGVVATGNGRIISL-SLDGTLNFYEL  325 (325)
T ss_dssp             TTTTEEEEE-EECCTTCGGGCEEEEEEEETTEEEEE-ETTSCEEEEET
T ss_pred             CCCCCEEEE-EEecCCcccCeEEEEEECCCCEEEEE-ECCCEEEEEEC
Confidence            998764332 1221111 11  12222233333444 34455889974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.83  E-value=6.8  Score=30.82  Aligned_cols=109  Identities=10%  Similarity=0.036  Sum_probs=54.9

Q ss_pred             EEEEcCCceEEEEEECCCCcEEecccCCCCC-CCceeEEEE-CCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684          212 YWITSARAYSVIGFDIESNTWRELSAPMADR-LEFATLVSR-NQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI  288 (373)
Q Consensus       212 y~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~-~~~~~~~~~-~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~  288 (373)
                      |++.+...+.|.++|.++.+-... .+.+.. ..-..++.. +|+ ||+.+ .....+.+|+++.    .+.......+.
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~-i~~~~~~~~~~~i~~spDg~~l~v~~-~~~~~v~v~D~~t----~~~~~~~~~~~   76 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKV-ITIADAGPTPMVPMVAPGGRIAYATV-NKSESLVKIDLVT----GETLGRIDLST   76 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEE-EECTTCTTCCCCEEECTTSSEEEEEE-TTTTEEEEEETTT----CCEEEEEECCB
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEE-EECCCCCCCccEEEECCCCCEEEEEE-CCCCeEEEEECCC----CcEEEEEecCC
Confidence            344445568899999998765433 233322 222233333 565 45554 3444578888754    43333222222


Q ss_pred             hhhhhhcCCCCCCCceEEEecCCEEEEEEc-----------CCccEEEEEccccCC
Q 046684          289 EMGMRLSGGKASWGGTRCAAGNGAICLYRE-----------VGLGMIIWREDEDKR  333 (373)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~~~yd~~~~~~  333 (373)
                      ......     ......+...++.+++.+.           ....+..+|..  ++
T Consensus        77 ~~~~~~-----~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~  125 (337)
T d1pbyb_          77 PEERVK-----SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE--TL  125 (337)
T ss_dssp             TTEEEE-----CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT--TT
T ss_pred             Cccccc-----ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc--CC
Confidence            211100     0112344444666766542           23467888988  77

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.83  E-value=5.3  Score=29.62  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=56.7

Q ss_pred             eeCcEEEEeeCCCCceEEEEEcCcccce---ecc----CCCCCCCCCCeEEEEE-cCCCCCCCCCceEEEEEeccCCCCC
Q 046684           92 SIGSFLLLRPINSTILQLVLCNPFTRQF---RYL----PLLNVSRTNPAVGIVM-EGPAQHGPFPNFRIYVAGGMSDEPR  163 (373)
Q Consensus        92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w---~~l----p~~~~~~~~~~~~~~~-~~~~~~~~~~~~kl~~~gg~~~~~~  163 (373)
                      ..+|.+|++.|    +++++|+..+-..   +.|    |.+|   ...-+++.. .....+     +++|++.|..    
T Consensus        57 ~~~~~~yfFkG----~~yw~y~~~~~~~gyPk~i~~~~~glp---~~iDAA~~~~~~~~~~-----~~~yfFkg~~----  120 (192)
T d1qhua1          57 HGHTSVYLIKG----DKVWVYTSEKNEKVYPKSLQDEFPGIP---FPLDAAVECHRGECQD-----EGILFFQGNR----  120 (192)
T ss_dssp             ETTTEEEEEET----TEEEEECC-------CEEHHHHSTTCC---SSCCEEEEECBBTBSS-----SEEEEEETTE----
T ss_pred             cCCCcEEEEeC----CEEEEEeCCccccCCCcChHHhCCCCC---CCceEEEEccccccCC-----CeEEEEeCCe----
Confidence            44688999988    5788887543221   111    2222   122233332 112223     8899987543    


Q ss_pred             CCCcccceEEEEECCCCc-----eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc
Q 046684          164 GGATYESMVEMYDSRHDA-----WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT  231 (373)
Q Consensus       164 ~~~~~~~~~~~yd~~~~~-----W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~  231 (373)
                              .+.||..++.     |..++.             ..+++..+|.+|++-|   ..-+.||..+.+
T Consensus       121 --------yw~yd~~~~~~~~~~w~gip~-------------~daA~~~~g~~YfFkg---~~y~r~~~~~~~  169 (192)
T d1qhua1         121 --------KWFWDLTTGTKKERSWPAVGN-------------CTSALRWLGRYYCFQG---NQFLRFNPVSGE  169 (192)
T ss_dssp             --------EEEEETTTTEEEEECCTTSCC-------------CSEEEEETTEEEEEET---TEEEEECTTTCC
T ss_pred             --------EEEEeCCCCCcccccccCcCC-------------cceeEEeCCcEEEEEC---CEEEEEcCCcce
Confidence                    6888877753     432221             2344567899999954   577888887754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.56  E-value=2.7  Score=33.21  Aligned_cols=110  Identities=6%  Similarity=-0.030  Sum_probs=55.4

Q ss_pred             CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684          209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI  288 (373)
Q Consensus       209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~  288 (373)
                      +.+.+. +.....+..+|...+.....................++...+.++ ....+.+|++..  .............
T Consensus        69 ~~~l~s-g~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~wd~~~--~~~~~~~~~~~~~  144 (342)
T d1yfqa_          69 DLQIYV-GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS-WDGLIEVIDPRN--YGDGVIAVKNLNS  144 (342)
T ss_dssp             SEEEEE-EETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE-TTSEEEEECHHH--HTTBCEEEEESCS
T ss_pred             CCEEEE-cccccceeeeecccccccccccccccccccccccccccccccccc-cccccceeeccc--cccceeeeccccc
Confidence            334444 445677888898876555441222222222223334555555443 344578998876  3444555444332


Q ss_pred             hhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684          289 EMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .....       ..........+..++.+...+.+..||..
T Consensus       145 ~~~~~-------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  178 (342)
T d1yfqa_         145 NNTKV-------KNKIFTMDTNSSRLIVGMNNSQVQWFRLP  178 (342)
T ss_dssp             SSSSS-------CCCEEEEEECSSEEEEEESTTEEEEEESS
T ss_pred             ccccc-------eeeeeeeeccCCceeeecCCCcEEEEecc
Confidence            22110       01233334445555556666678888876

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=85.40  E-value=5.3  Score=31.64  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=39.4

Q ss_pred             ceEEECCEEEEEE----cCCceEEEEEECC-CCcEEecccCCCCCCCceeEEEECCEEEEEEee
Q 046684          203 ESVCTRGMLYWIT----SARAYSVIGFDIE-SNTWRELSAPMADRLEFATLVSRNQKLTLIGGT  261 (373)
Q Consensus       203 ~~~~~~g~ly~~g----g~~~~~i~~yd~~-~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~  261 (373)
                      ++-.++|.||+..    +....+-+.-... ...|..+..|-..+....-.+-+++.|+++|..
T Consensus       339 cvk~y~gvlyl~trgt~~t~~gssl~~s~d~gq~w~~lrfp~nvhhsnlpfakvgd~l~ifgse  402 (516)
T d1v0ea1         339 CIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE  402 (516)
T ss_dssp             EEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEEC
T ss_pred             hhhhcCCEEEEEeccccCCCCCccceeccccccChhhccCCccccccCCChhhcCCeEEEeccc
Confidence            3456899999997    2233444444433 457998855555555566678889999999864

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.91  E-value=6.7  Score=29.13  Aligned_cols=113  Identities=9%  Similarity=-0.023  Sum_probs=60.9

Q ss_pred             eCcEEEEeeCCCCceEEEEEcCcccce---eccC---CCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684           93 IGSFLLLRPINSTILQLVLCNPFTRQF---RYLP---LLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA  166 (373)
Q Consensus        93 ~~g~l~~~gg~~~~~~~~v~np~t~~w---~~lp---~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~  166 (373)
                      .+|.+|++-|    .++++|+..+...   +.+.   -+|......-+++...   .+     +++|++-|..       
T Consensus        66 ~~~~~yfFkG----~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~---~~-----~~~Y~FkG~~-------  126 (195)
T d1su3a2          66 DRDEVRFFKG----NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEE---NT-----GKTYFFVANK-------  126 (195)
T ss_dssp             GGTEEEEEET----TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEET---TT-----TEEEEEETTE-------
T ss_pred             CCcEEEEECC----cEEEEEcCCccccCCCccchhhcCCCCCccccccccccC---CC-----CeEEEEeCCE-------
Confidence            3689999987    6888887543221   1110   1122222233333331   11     7899997653       


Q ss_pred             cccceEEEEECCCCceeeecCCCcccc--ccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEe
Q 046684          167 TYESMVEMYDSRHDAWQIIGSMPVEFA--VRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRE  234 (373)
Q Consensus       167 ~~~~~~~~yd~~~~~W~~~~~~p~~~~--~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~  234 (373)
                           .+.||..++.  .-...|....  -+..+..-.++...+|++|++-|   ...+.||..+.+-..
T Consensus       127 -----y~ry~~~~~~--vd~gyPk~I~~~w~Gvp~~iDAAf~~~g~~YfFkg---~~y~r~~~~~~~v~~  186 (195)
T d1su3a2         127 -----YWRYDEYKRS--MDPGYPKMIAHDFPGIGHKVDAVFMKDGFFYFFHG---TRQYKFDPKTKRILT  186 (195)
T ss_dssp             -----EEEEETTTTE--ECSSCSEEHHHHSTTSCSCCSEEEEETTEEEEEET---TEEEEEETTTTEEEE
T ss_pred             -----EEEEeccCcc--ccCCcccccccccCCCCCCccEEEEECCeEEEEEC---CEEEEEeCCcCEEEe
Confidence                 7889887653  2122221100  00111222344567899999954   478889987766543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.71  E-value=10  Score=33.45  Aligned_cols=121  Identities=11%  Similarity=0.113  Sum_probs=66.8

Q ss_pred             ceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCC--------CCCceeEEEECCEEEEEEeecCCceEEEEee
Q 046684          203 ESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMAD--------RLEFATLVSRNQKLTLIGGTCGGDACVWELS  272 (373)
Q Consensus       203 ~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~--------~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~  272 (373)
                      +.++.+|++|+..  ..+.|+++|.+++  .|+.- ...+.        .....+.+..++++|+....    -.++-++
T Consensus        72 tPiv~~g~vyv~t--~~~~v~AlDa~TG~~~W~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~----g~l~ald  144 (573)
T d1kb0a2          72 TPVVVDGIMYVSA--SWSVVHAIDTRTGNRIWTYD-PQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD----GRLIALD  144 (573)
T ss_dssp             CCEEETTEEEEEC--GGGCEEEEETTTTEEEEEEC-CCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT----SEEEEEE
T ss_pred             CCEEECCEEEEEC--CCCeEEEEeCCCCCeEEEeC-CCCCcccccccccccccccceEECCcEEEEecc----cceeeec
Confidence            3478999999874  4567999999987  47643 11111        11223466678887775421    1456665


Q ss_pred             cCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc-----CCccEEEEEccccCCcccEEEe
Q 046684          273 EGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE-----VGLGMIIWREDEDKRKWEWVWV  340 (373)
Q Consensus       273 ~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~yd~~~~~~~~~W~~~  340 (373)
                      ....+..|+....-.....        ......-...++.+++-..     ..+.+..||.+  +++..|+.-
T Consensus       145 a~tG~~~W~~~~~~~~~~~--------~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~--TG~~~W~~~  207 (573)
T d1kb0a2         145 AATGKEVWHQNTFEGQKGS--------LTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAE--TGERKWRWF  207 (573)
T ss_dssp             TTTCCEEEEEETTTTCCSS--------CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT--TCCEEEEEE
T ss_pred             cccccceecccCccCCcce--------EEeecceEEEeccEEEeeccccccccceEEEEecC--Cccceeeee
Confidence            4112233654211000000        0001223445777776331     12469999999  997778764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.74  E-value=8  Score=34.40  Aligned_cols=61  Identities=11%  Similarity=0.198  Sum_probs=38.5

Q ss_pred             ceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCC--cEEec
Q 046684          170 SMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESN--TWREL  235 (373)
Q Consensus       170 ~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~--~w~~~  235 (373)
                      ..+...|.+|++  |+.-..-+.     .......+.+++++++|+-...    ....|.+||.+++  .|+.-
T Consensus       131 g~l~Alda~tG~~~w~~~~~d~~-----~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         131 GNVAALNAETGETVWKVENSDIK-----VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGG-----GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEeeccccCceeccccccccc-----cccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            357888888876  765322111     1122344568889999875321    2578999999987  47643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.75  E-value=9.9  Score=29.56  Aligned_cols=105  Identities=8%  Similarity=0.001  Sum_probs=55.4

Q ss_pred             ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684          207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE  284 (373)
Q Consensus       207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~  284 (373)
                      .+++|||.. .....|...++....-+.+ ...... .-..+++  .+|.||........ ..|+....  +...-+.+.
T Consensus        89 ~~~~lY~~d-~~~~~I~~~~~dg~~~~~l-~~~~l~-~p~~l~vdp~~g~ly~t~~~~~~-~~I~r~~~--dG~~~~~i~  162 (263)
T d1npea_          89 LGRTIFWTD-SQLDRIEVAKMDGTQRRVL-FDTGLV-NPRGIVTDPVRGNLYWTDWNRDN-PKIETSHM--DGTNRRILA  162 (263)
T ss_dssp             TTTEEEEEE-TTTTEEEEEETTSCSCEEE-ECSSCS-SEEEEEEETTTTEEEEEECCSSS-CEEEEEET--TSCCCEEEE
T ss_pred             cCCeEEEec-cCCCEEEEEecCCceEEEE-eccccc-CCcEEEEecccCcEEEeecCCCC-cEEEEecC--CCCCceeee
Confidence            378999994 4567899999876654444 221111 1123444  37788877533222 24665554  222222221


Q ss_pred             eechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEcc
Q 046684          285 KVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWRED  329 (373)
Q Consensus       285 ~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~  329 (373)
                      .  ....          .+.+++.  .+++||..+...+.+..+|++
T Consensus       163 ~--~~~~----------~P~glaiD~~~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         163 Q--DNLG----------LPNGLTFDAFSSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             C--TTCS----------CEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             e--eccc----------ccceEEEeecCcEEEEEeCCCCEEEEEECC
Confidence            1  1100          0223333  367788777666677777777