Citrus Sinensis ID: 046692

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MICESPTGEEDSLRRDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAETGEECGDPSSRRRSSASEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYYPKL
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccHHHHHHcccHHHHHHHcccHHHHHHHHccccccEEEEEccccccccccEEEEEccccccEEEccccccccccccEEEEEcccEEEEEccccccccccccccccccccEEEEEccccccEEEccccccccccEEEEEEcccccEEEEEEEcccccccccEEEEcccccEEEccccccccccccccccccccEEccccccEEEEcccccccEEEEcccEEEEEEcccccccccccEEEEEEccccEEEEcccccccccEEEEEEEEccEEEEEEcccEEEEEEccccEEEEccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEccccccEEccccccccccccccccccccccccccEccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEEEEccccccccEEEEEcccccccccccccccccccEEEEEEccccEEEEEcccccccccccccccccccccEEEEccccccHccccccccccccEEEEEEEccccEEEEEEEcccccccccHHHccccccccccccccHHHHHccccccccccccccccccccccccHHHHccccccccEEEEEEcccccccccccccEEEccccccEEEHccccccccEEEccEEEccEEEEEEccccEEEEEcccccEEEEccccccccHHHccccc
micesptgeedslrrDFESLSVSKRLVRSVSRKLRNknlrnydgddeddvkgvSLKCLTLygrgggckvgaetgeecgdpssrrrssaseegkgykpfcgseeigvgvdcfsygvkeKFWKKSNRKYLELEDSVRnsrmhiflpdDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRReglhqnpwlFLFGAvkdgycsgeihaldvsqdqWHRIDASILKGRFMFSVVSIMDDVYVVGGcssltsfgrvdrssfkthkgvlvfspltKSWRKVASMRYArsmpilgisevspefsiipchqshqdrrfprsrlggvsdvyedphrlsLRRQYRnsfdgfegsllpnrksykFIRQKSDQSITKASKRFVLIAVGglgswdepldsgeiydsVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSetdklagydiergfwigiqtspfpprvieyypkl
micesptgeedslrrdfeslsvskrlvrsvsrklrnknlrnydgddeddvkGVSLKCLTLygrgggckvgaetgeecgdpssrrrssaseegkgykpfcgseeigvGVDCFSYGVKEKFWKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSfgrvdrssfkthkgvlvfspltkswRKVASMRYARSMPILGISEVSPEFSIIPChqshqdrrfprsrlggvsdvyedphrlslrrqyrnsfdgfegsllpnrksyKFIRQKSDQSITKASKRFVLIAVgglgswdepldSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWigiqtspfpprvieyypkl
MICESPTGEEDSLRRDFEslsvskrlvrsvsrklrNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAETGEECGDPssrrrssasEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYYPKL
*************************************************VKGVSLKCLTLYGRGGGCKVG*************************KPFCGSEEIGVGVDCFSYGVKEKFWKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCH*******************************Y**SFDGFEGSLL****SYKFI*******ITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYY***
****************FESLSVS******************************SLKCLTL*********************************************V***********************************FLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRV*EYYP**
**************RDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAE*********************GYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFI********TKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYYPKL
**************RDFESLSVSKRLVRSVSRKLRNKNL*********DVKGVSLKCLTLYGRGGGCKVGAET*********************YKP*CGSEEIGVGVDCFSYGVKEKFWKKSN************SRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYYPKL
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MICESPTGEEDSLRRDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAETGEECGDPSSRRRSSASEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYYPKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
Q9FII2 563 F-box/kelch-repeat protei yes no 0.952 0.785 0.609 1e-161
Q9FII1 563 F-box/kelch-repeat protei yes no 0.950 0.783 0.608 1e-158
Q9C6Z0398 F-box/kelch-repeat protei no no 0.198 0.231 0.377 2e-09
Q9M310411 F-box/kelch-repeat protei no no 0.299 0.338 0.287 3e-08
Q9LFV5448 F-box/kelch-repeat protei no no 0.362 0.375 0.242 1e-07
Q9M8L2354 F-box/kelch-repeat protei no no 0.293 0.384 0.294 2e-06
Q8LAW2372 F-box protein AFR OS=Arab no no 0.293 0.365 0.265 5e-06
Q9CAG8376 F-box/kelch-repeat protei no no 0.288 0.356 0.224 2e-05
Q9FZK1467 F-box only protein 6 OS=A no no 0.267 0.265 0.251 0.0003
Q0WW40383 F-box/kelch-repeat protei no no 0.299 0.362 0.263 0.0004
>sp|Q9FII2|FK117_ARATH F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1 Back     alignment and function desciption
 Score =  567 bits (1460), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/464 (60%), Positives = 356/464 (76%), Gaps = 22/464 (4%)

Query: 1   MICESPTGEEDSLRRDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTL 60
           MI E P G E+S+R+D E L+VS+RLV+SVS+KL+ K  +    +DE+  +G ++ CL++
Sbjct: 2   MISEKPLGVEESIRQDLEVLTVSRRLVKSVSQKLKKKIHKTEVVEDEEIARG-AVNCLSI 60

Query: 61  YGRGGGCKVGAETGEECGDPSSRRRSSASEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFW 120
                GC+V A+TGE+  D S++R SSASEEGKG    CG+EE    +DCFSYGV+E+FW
Sbjct: 61  ---SVGCRV-ADTGEDFEDSSNKRWSSASEEGKGLMTICGTEE--TRLDCFSYGVRERFW 114

Query: 121 KKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFL 180
           KK+NRKYL   DS ++ R H++LPDDILEMCL+RLPLTSL+NA LVCKKW+ +  T RFL
Sbjct: 115 KKNNRKYLA--DSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFL 172

Query: 181 QMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDD 240
           QMRREG  Q PWLFLF A+KDG  SG+IH  DVSQD+WHRI+  +LKGRFM+SV SI ++
Sbjct: 173 QMRREGSFQTPWLFLFAALKDGCSSGDIHGYDVSQDKWHRIETDLLKGRFMYSVTSIHEE 232

Query: 241 VYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPE 300
           +Y+VGG S       +DR+SFK+H+G+LVFSP  K+WRK+ASMR+ARS+PI+G +EV+ E
Sbjct: 233 IYIVGGRS-------MDRNSFKSHRGILVFSPSIKAWRKIASMRHARSLPIVGATEVTSE 285

Query: 301 FSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFI 360
           FS +   Q+ QDRRF  SR+GG SDVYEDPHRLS+RRQ RNS D          KS++ I
Sbjct: 286 FSTMQTKQNRQDRRFHLSRVGGESDVYEDPHRLSVRRQNRNSADQ------NGTKSHRLI 339

Query: 361 RQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGV 420
           RQK D+    +SKRFVLIA+GG G +DEPLDSGEIYDS +N W E+QRLP+ FGVVS G+
Sbjct: 340 RQKLDRLNRNSSKRFVLIAIGGTGLFDEPLDSGEIYDSATNTWSEMQRLPMGFGVVSCGI 399

Query: 421 VCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYYPKL 464
           +CNGIFY YSE DKL+GYDIERGFWI IQTSP PPRV E+YPKL
Sbjct: 400 ICNGIFYAYSENDKLSGYDIERGFWITIQTSPIPPRVHEFYPKL 443

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FII1|FK118_ARATH F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1 Back     alignment and function description
>sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8L2|FBK30_ARATH F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1 Back     alignment and function description
>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2 Back     alignment and function description
>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1 Back     alignment and function description
>sp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
255539270 583 hypothetical protein RCOM_1601660 [Ricin 0.995 0.792 0.795 0.0
224086066 581 predicted protein [Populus trichocarpa] 0.991 0.791 0.778 0.0
449452995 580 PREDICTED: F-box/kelch-repeat protein At 0.978 0.782 0.757 0.0
449489353 579 PREDICTED: LOW QUALITY PROTEIN: F-box/ke 0.976 0.782 0.750 0.0
225457590 580 PREDICTED: F-box/kelch-repeat protein At 0.991 0.793 0.775 0.0
356508586 579 PREDICTED: F-box/kelch-repeat protein At 0.978 0.784 0.743 0.0
357467123 583 F-box/kelch-repeat protein [Medicago tru 0.997 0.794 0.707 0.0
356517251 582 PREDICTED: F-box/kelch-repeat protein At 0.978 0.780 0.728 0.0
297795309561 kelch repeat-containing F-box family pro 0.950 0.786 0.625 1e-162
388513199412 unknown [Medicago truncatula] 0.881 0.992 0.691 1e-159
>gi|255539270|ref|XP_002510700.1| hypothetical protein RCOM_1601660 [Ricinus communis] gi|223551401|gb|EEF52887.1| hypothetical protein RCOM_1601660 [Ricinus communis] Back     alignment and taxonomy information
 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/465 (79%), Positives = 408/465 (87%), Gaps = 3/465 (0%)

Query: 1   MICESPTGEEDSLRRDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTL 60
           M  E  +GE  SL RDFE+LSVS+RLVRSVS+KLR KN R    D+++ VKG+S++CL+L
Sbjct: 1   MFSERLSGEASSLNRDFEALSVSQRLVRSVSQKLRKKNNRCEGEDEDNSVKGISVRCLSL 60

Query: 61  YGRGGGCKVGAETGEECGDPSSRRRSSAS-EEGKGYKPFCGSEEIGVGVDCFSYGVKEKF 119
           YGRGGGCKVGA+TGEE GDPSSRRRSS++ EEGKGYKP CG+EE   GVDCFS+GV+E F
Sbjct: 61  YGRGGGCKVGADTGEEYGDPSSRRRSSSASEEGKGYKPICGTEE--SGVDCFSHGVREMF 118

Query: 120 WKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRF 179
           WKK+NRK  ELEDSV+NSR+HIFLPDDILE+CLVRLPL SLMNARLVCKKWR LTTTPRF
Sbjct: 119 WKKNNRKDFELEDSVQNSRLHIFLPDDILELCLVRLPLISLMNARLVCKKWRCLTTTPRF 178

Query: 180 LQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMD 239
           LQMR+EGL+QNPWLFLFGAVKDG+CSGEIHALDVSQD WHRID+ IL+GRFMFSV SI +
Sbjct: 179 LQMRQEGLYQNPWLFLFGAVKDGFCSGEIHALDVSQDHWHRIDSDILRGRFMFSVASIQE 238

Query: 240 DVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSP 299
           D+Y+VGGCSSLT FGRVDRSS KTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVS 
Sbjct: 239 DIYIVGGCSSLTHFGRVDRSSCKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSS 298

Query: 300 EFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKF 359
           +FSI   HQ   +RRFPRSR+GGVSDVYEDPHRLSLRR YRN+ D  E S L +RKSYKF
Sbjct: 299 DFSIGHNHQHRHERRFPRSRIGGVSDVYEDPHRLSLRRHYRNAIDENEASSLHSRKSYKF 358

Query: 360 IRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSG 419
           IRQKSDQS  K  KRFVLIAVGGLGSWDEPLDSGEIYD VSNKW EIQ+L +DFGVV SG
Sbjct: 359 IRQKSDQSNAKGCKRFVLIAVGGLGSWDEPLDSGEIYDPVSNKWTEIQKLSIDFGVVCSG 418

Query: 420 VVCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYYPKL 464
           V+CNGIFYVYSETDKL GYDIERGFW+ IQT PFPPRV EYYPKL
Sbjct: 419 VICNGIFYVYSETDKLMGYDIERGFWVAIQTFPFPPRVHEYYPKL 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224086066|ref|XP_002307801.1| predicted protein [Populus trichocarpa] gi|222857250|gb|EEE94797.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452995|ref|XP_004144244.1| PREDICTED: F-box/kelch-repeat protein At5g42350-like isoform 1 [Cucumis sativus] gi|449452997|ref|XP_004144245.1| PREDICTED: F-box/kelch-repeat protein At5g42350-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449489353|ref|XP_004158287.1| PREDICTED: LOW QUALITY PROTEIN: F-box/kelch-repeat protein At5g42350-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225457590|ref|XP_002273276.1| PREDICTED: F-box/kelch-repeat protein At5g42350-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508586|ref|XP_003523036.1| PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max] Back     alignment and taxonomy information
>gi|357467123|ref|XP_003603846.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355492894|gb|AES74097.1| F-box/kelch-repeat protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356517251|ref|XP_003527302.1| PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max] Back     alignment and taxonomy information
>gi|297795309|ref|XP_002865539.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297311374|gb|EFH41798.1| kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388513199|gb|AFK44661.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
TAIR|locus:2162286 563 AT5G42350 "AT5G42350" [Arabido 0.952 0.785 0.575 3.1e-138
TAIR|locus:2162301 563 AT5G42360 "AT5G42360" [Arabido 0.950 0.783 0.574 2e-136
TAIR|locus:2198304398 AT1G30090 "AT1G30090" [Arabido 0.254 0.296 0.341 3.5e-10
TAIR|locus:2143256448 AT5G15710 "AT5G15710" [Arabido 0.336 0.348 0.265 3.9e-10
TAIR|locus:2082797411 HWS "HAWAIIAN SKIRT" [Arabidop 0.209 0.236 0.343 5.6e-09
TAIR|locus:2198958354 AT1G80440 "AT1G80440" [Arabido 0.284 0.372 0.296 6.3e-07
TAIR|locus:2032855383 AT1G16250 "AT1G16250" [Arabido 0.299 0.362 0.276 1.1e-06
TAIR|locus:2008773376 AT1G67480 "AT1G67480" [Arabido 0.295 0.364 0.227 4.6e-06
TAIR|locus:2046683372 AFR "ATTENUATED FAR-RED RESPON 0.336 0.419 0.238 7.5e-06
TAIR|locus:2148483413 AT5G26960 "AT5G26960" [Arabido 0.140 0.157 0.358 1.1e-05
TAIR|locus:2162286 AT5G42350 "AT5G42350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
 Identities = 267/464 (57%), Positives = 334/464 (71%)

Query:     1 MICESPTGEEDSLRRDFEXXXXXXXXXXXXXXXXXNKNLRNYDGDDEDDVKGVSLKCLTL 60
             MI E P G E+S+R+D E                  K  +    +DE+  +G ++ CL++
Sbjct:     2 MISEKPLGVEESIRQDLEVLTVSRRLVKSVSQKLKKKIHKTEVVEDEEIARG-AVNCLSI 60

Query:    61 YGRGGGCKVGAETGEECGDPXXXXXXXXXEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFW 120
                  GC+V A+TGE+  D          EEGKG    CG+EE    +DCFSYGV+E+FW
Sbjct:    61 ---SVGCRV-ADTGEDFEDSSNKRWSSASEEGKGLMTICGTEE--TRLDCFSYGVRERFW 114

Query:   121 KKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFL 180
             KK+NRKYL   DS ++ R H++LPDDILEMCL+RLPLTSL+NA LVCKKW+ +  T RFL
Sbjct:   115 KKNNRKYLA--DSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFL 172

Query:   181 QMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDD 240
             QMRREG  Q PWLFLF A+KDG  SG+IH  DVSQD+WHRI+  +LKGRFM+SV SI ++
Sbjct:   173 QMRREGSFQTPWLFLFAALKDGCSSGDIHGYDVSQDKWHRIETDLLKGRFMYSVTSIHEE 232

Query:   241 VYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPE 300
             +Y+VGG S       +DR+SFK+H+G+LVFSP  K+WRK+ASMR+ARS+PI+G +EV+ E
Sbjct:   233 IYIVGGRS-------MDRNSFKSHRGILVFSPSIKAWRKIASMRHARSLPIVGATEVTSE 285

Query:   301 FSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFI 360
             FS +   Q+ QDRRF  SR+GG SDVYEDPHRLS+RRQ RNS D   G+     KS++ I
Sbjct:   286 FSTMQTKQNRQDRRFHLSRVGGESDVYEDPHRLSVRRQNRNSADQ-NGT-----KSHRLI 339

Query:   361 RQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGV 420
             RQK D+    +SKRFVLIA+GG G +DEPLDSGEIYDS +N W E+QRLP+ FGVVS G+
Sbjct:   340 RQKLDRLNRNSSKRFVLIAIGGTGLFDEPLDSGEIYDSATNTWSEMQRLPMGFGVVSCGI 399

Query:   421 VCNGIFYVYSETDKLAGYDIERGFWIGIQTSPFPPRVIEYYPKL 464
             +CNGIFY YSE DKL+GYDIERGFWI IQTSP PPRV E+YPKL
Sbjct:   400 ICNGIFYAYSENDKLSGYDIERGFWITIQTSPIPPRVHEFYPKL 443
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2162301 AT5G42360 "AT5G42360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198304 AT1G30090 "AT1G30090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198958 AT1G80440 "AT1G80440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032855 AT1G16250 "AT1G16250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148483 AT5G26960 "AT5G26960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FII1FK118_ARATHNo assigned EC number0.60860.95040.7833yesno
Q9FII2FK117_ARATHNo assigned EC number0.60990.95250.7850yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002903001
SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (551 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 2e-07
pfam0064648 pfam00646, F-box, F-box domain 3e-07
pfam1293747 pfam12937, F-box-like, F-box-like 9e-06
pfam0134446 pfam01344, Kelch_1, Kelch motif 3e-05
pfam1396450 pfam13964, Kelch_6, Kelch motif 1e-04
smart0061247 smart00612, Kelch, Kelch domain 2e-04
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information 
 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 143 LPDDILEMCLVRLPLTSLMNARLVCKKWRYL 173
           LPD+ILE  L +L    L+  R V +KWR L
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSL 31

Length = 41
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif Back     alignment and domain information
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif Back     alignment and domain information
>gnl|CDD|128874 smart00612, Kelch, Kelch domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
PHA02713557 hypothetical protein; Provisional 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
PHA03098534 kelch-like protein; Provisional 100.0
PHA02790480 Kelch-like protein; Provisional 100.0
PHA02713557 hypothetical protein; Provisional 100.0
PLN02153341 epithiospecifier protein 99.98
PLN02193470 nitrile-specifier protein 99.97
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.97
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.97
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.96
PLN02153341 epithiospecifier protein 99.96
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.96
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.96
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.96
PHA03098534 kelch-like protein; Provisional 99.95
PLN02193470 nitrile-specifier protein 99.95
PHA02790480 Kelch-like protein; Provisional 99.94
KOG4693392 consensus Uncharacterized conserved protein, conta 99.9
KOG4693392 consensus Uncharacterized conserved protein, conta 99.9
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 99.84
KOG1230 521 consensus Protein containing repeated kelch motifs 99.81
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 99.76
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 99.76
KOG1230 521 consensus Protein containing repeated kelch motifs 99.71
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 99.69
COG3055381 Uncharacterized protein conserved in bacteria [Fun 99.47
COG3055381 Uncharacterized protein conserved in bacteria [Fun 99.45
PF1396450 Kelch_6: Kelch motif 99.23
KOG2437 723 consensus Muskelin [Signal transduction mechanisms 99.04
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 98.94
PF1396450 Kelch_6: Kelch motif 98.8
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 98.75
PF1341549 Kelch_3: Galactose oxidase, central domain 98.74
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 98.63
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 98.63
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 98.6
smart0061247 Kelch Kelch domain. 98.49
PF1341549 Kelch_3: Galactose oxidase, central domain 98.42
KOG2437 723 consensus Muskelin [Signal transduction mechanisms 98.34
smart0061247 Kelch Kelch domain. 98.33
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 98.31
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 98.13
PF1385442 Kelch_5: Kelch motif 98.08
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 97.91
PLN02772 398 guanylate kinase 97.74
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 97.49
PLN02772 398 guanylate kinase 97.43
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 97.42
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 96.88
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 96.78
PF1385442 Kelch_5: Kelch motif 96.64
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 96.36
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 96.2
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 96.19
smart0025641 FBOX A Receptor for Ubiquitination Targets. 96.14
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 95.98
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 95.97
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 95.69
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 95.21
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 95.16
PF03089337 RAG2: Recombination activating protein 2; InterPro 94.88
KOG0281499 consensus Beta-TrCP (transducin repeats containing 94.43
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 94.02
PF12768 281 Rax2: Cortical protein marker for cell polarity 93.79
smart00284255 OLF Olfactomedin-like domains. 92.38
KOG0310 487 consensus Conserved WD40 repeat-containing protein 89.66
KOG2055514 consensus WD40 repeat protein [General function pr 89.09
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 87.38
PF03089337 RAG2: Recombination activating protein 2; InterPro 87.23
PRK13684334 Ycf48-like protein; Provisional 86.99
PF12768 281 Rax2: Cortical protein marker for cell polarity 85.37
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 83.25
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 83.23
KOG0310 487 consensus Conserved WD40 repeat-containing protein 81.44
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 81.2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-43  Score=374.88  Aligned_cols=293  Identities=21%  Similarity=0.304  Sum_probs=243.0

Q ss_pred             cccccccC--ccccchhhhhhcccCCCCChHHHHHHHHhhCCcchhhhhhcccc-------ccccccCCchHHH-HHhhc
Q 046692          117 EKFWKKSN--RKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCK-------KWRYLTTTPRFLQ-MRREG  186 (464)
Q Consensus       117 ~~~W~~~~--~r~~~l~~ll~~vrl~~~lp~dl~~~iL~rLp~~sl~~~~~vck-------~W~~l~~~~~f~~-~r~~~  186 (464)
                      .++|++||  +|..|++++++++|++++.|.+|.+.+    ....+++.++.|+       .|+.++......+ .+...
T Consensus       204 ~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v----~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~  279 (571)
T KOG4441|consen  204 AMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIV----ESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRP  279 (571)
T ss_pred             HHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHH----hhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCccc
Confidence            46799999  667899999999999988888887755    3333555555554       3544444322111 11111


Q ss_pred             c-CCCCeEEEeccccC-CccccceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCcccc
Q 046692          187 L-HQNPWLFLFGAVKD-GYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTH  264 (464)
Q Consensus       187 ~-~~~~~l~v~GG~~~-~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~  264 (464)
                      . ...+.||++||... ....+.+.+|||.+++|..+++ |+.+|..+++++++|+|||+||.+         . .....
T Consensus       280 r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-m~~~r~~~~~~~~~~~lYv~GG~~---------~-~~~~l  348 (571)
T KOG4441|consen  280 RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-MPSPRCRVGVAVLNGKLYVVGGYD---------S-GSDRL  348 (571)
T ss_pred             CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCC-CCcccccccEEEECCEEEEEcccc---------C-CCccc
Confidence            2 45688999999986 5678899999999999999998 889999999999999999999954         1 22567


Q ss_pred             ceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCC
Q 046692          265 KGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFD  344 (464)
Q Consensus       265 ~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n  344 (464)
                      +++|+|||.+++|+.+|+|+.+|..+++++++                |  .||++||.++    ...++++|+|||.+|
T Consensus       349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~----------------g--~iYavGG~dg----~~~l~svE~YDp~~~  406 (571)
T KOG4441|consen  349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD----------------G--KLYAVGGFDG----EKSLNSVECYDPVTN  406 (571)
T ss_pred             ceEEEecCCCCceeccCCccCccccceeEEEC----------------C--EEEEEecccc----ccccccEEEecCCCC
Confidence            89999999999999999999999999999998                3  3899999975    688999999999999


Q ss_pred             cccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEEC
Q 046692          345 GFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCN  423 (464)
Q Consensus       345 ~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~  423 (464)
                      +|+. .+|+.++..          +++++++++||++||.++....++++++|||.+|+|+.+++|+.+|..++ +++++
T Consensus       407 ~W~~va~m~~~r~~----------~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~  475 (571)
T KOG4441|consen  407 KWTPVAPMLTRRSG----------HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLN  475 (571)
T ss_pred             cccccCCCCcceee----------eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEEC
Confidence            9999 777775432          46789999999999998775689999999999999999999999988876 45999


Q ss_pred             CEEEEEeCCC------ceEEEeCCCCcEEEcccCCCCccc
Q 046692          424 GIFYVYSETD------KLAGYDIERGFWIGIQTSPFPPRV  457 (464)
Q Consensus       424 g~lYViGG~~------~v~~YD~~~~~W~~l~~lp~pr~~  457 (464)
                      ++||++||.+      +|++|||.+++|+.+++|+.+|.-
T Consensus       476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~  515 (571)
T KOG4441|consen  476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA  515 (571)
T ss_pred             CEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence            9999999965      599999999999999999988864

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF12768 Rax2: Cortical protein marker for cell polarity Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PF12768 Rax2: Cortical protein marker for cell polarity Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 2e-11
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 2e-07
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 5e-07
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 6e-07
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 7e-07
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 4e-05
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 4e-10
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 5e-08
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 7e-08
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 2e-06
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 3e-05
2xn4_A 302 Kelch-like protein 2; structural protein, cytoskel 4e-04
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 8e-04
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 4e-10
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 1e-08
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 2e-08
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 4e-07
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 2e-06
4asc_A 315 Kelch repeat and BTB domain-containing protein 5; 4e-05
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 8e-04
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 6e-10
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 7e-09
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 4e-08
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 1e-06
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 2e-06
2woz_A 318 Kelch repeat and BTB domain-containing protein 10; 1e-04
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 1e-09
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 2e-08
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 3e-08
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 1e-06
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 3e-06
3ii7_A 306 Kelch-like protein 7; protein-binding, kelch-repea 5e-05
2uvk_A 357 YJHT; unknown function, hypothetical protein, sial 2e-08
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 9e-07
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 2e-05
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 3e-08
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 4e-07
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 4e-07
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 5e-07
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 2e-06
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 1e-05
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 1e-05
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 3e-04
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 4e-04
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 15/121 (12%)

Query: 170 WRYLT--TTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILK 227
             + +    PR              ++  G          + A + S   W R+ A +  
Sbjct: 6   HHHHSSGLVPR----GSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRL-ADLQV 59

Query: 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYAR 287
            R   +   +   +Y VGG ++         +       +  ++P+T  W   A M   R
Sbjct: 60  PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA-------LDCYNPMTNQWSPCAPMSVPR 112

Query: 288 S 288
           +
Sbjct: 113 N 113
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 100.0
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 100.0
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 100.0
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 100.0
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 100.0
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 100.0
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 100.0
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 100.0
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 100.0
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 100.0
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 100.0
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 100.0
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.98
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.97
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.96
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 99.95
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.93
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 99.9
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.83
2ovr_B 445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.79
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 97.43
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 97.11
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 97.0
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 96.91
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 96.68
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.64
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 96.56
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 96.17
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 96.05
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 96.04
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 95.82
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 95.62
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 95.54
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 95.49
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 95.18
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 95.08
3jrp_A 379 Fusion protein of protein transport protein SEC13 95.05
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 95.03
3jrp_A379 Fusion protein of protein transport protein SEC13 94.84
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 94.79
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 94.76
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 94.48
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 94.39
3bws_A 433 Protein LP49; two-domain, immunoglobulin-like, 7-b 94.35
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 94.31
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 94.05
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 94.04
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 93.84
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 93.77
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 93.68
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 93.53
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 93.46
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 93.45
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 93.14
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 93.14
3jro_A 753 Fusion protein of protein transport protein SEC13 93.06
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 93.05
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 92.97
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 92.81
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 92.69
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 92.58
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 92.46
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 92.23
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 92.1
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 91.7
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 91.68
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 91.39
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 91.38
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 91.33
2iwa_A 266 Glutamine cyclotransferase; pyroglutamate, acyltra 91.3
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 91.26
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 91.04
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 90.99
1ri6_A 343 Putative isomerase YBHE; 7-bladed propeller, enzym 90.81
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 90.57
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 90.39
4g56_B357 MGC81050 protein; protein arginine methyltransfera 90.27
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 90.15
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 89.81
3v9f_A 781 Two-component system sensor histidine kinase/RESP 89.77
2pm7_B297 Protein transport protein SEC13, protein transport 89.44
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 89.28
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 89.15
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 89.14
4e54_B435 DNA damage-binding protein 2; beta barrel, double 89.13
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 89.13
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 89.08
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 89.0
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 88.99
3jro_A 753 Fusion protein of protein transport protein SEC13 88.96
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 88.94
4a2l_A 795 BT_4663, two-component system sensor histidine kin 88.93
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 88.62
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 88.45
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 88.36
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 88.15
4g56_B357 MGC81050 protein; protein arginine methyltransfera 88.1
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 88.04
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 87.96
1qks_A 567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 87.85
3v9f_A 781 Two-component system sensor histidine kinase/RESP 87.62
1nir_A 543 Nitrite reductase; hemoprotein, denitrification, d 87.21
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 86.77
1qhu_A460 Protein (hemopexin); beta propeller, HAEM binding 86.65
2aq5_A 402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 86.22
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 86.21
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 86.16
2pm9_A 416 Protein WEB1, protein transport protein SEC31; bet 86.11
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 84.85
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 84.66
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 84.15
3p5b_L400 Low density lipoprotein receptor variant; B-propel 84.15
1sq9_A 397 Antiviral protein SKI8; WD repeat, beta-transducin 83.97
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 83.94
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 83.56
4a2l_A 795 BT_4663, two-component system sensor histidine kin 82.93
4a11_B 408 DNA excision repair protein ERCC-8; DNA binding pr 82.31
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 82.16
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 81.95
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 81.95
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 81.35
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 81.2
2pm7_B297 Protein transport protein SEC13, protein transport 80.85
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 80.7
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 80.35
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
Probab=100.00  E-value=3e-36  Score=297.37  Aligned_cols=255  Identities=20%  Similarity=0.258  Sum_probs=212.8

Q ss_pred             CcchhhhhhccccccccccCCchHHHHHhh--ccCCCCeEEEeccc----cCCccccceEEeeCCCCceeeccccccCCC
Q 046692          156 PLTSLMNARLVCKKWRYLTTTPRFLQMRRE--GLHQNPWLFLFGAV----KDGYCSGEIHALDVSQDQWHRIDASILKGR  229 (464)
Q Consensus       156 p~~sl~~~~~vck~W~~l~~~~~f~~~r~~--~~~~~~~l~v~GG~----~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R  229 (464)
                      +..++..+++.+++|..+...|.   .|..  ....++.||++||.    ......++++.||+.+++|.++++ ++.+|
T Consensus        37 ~~~~~~~~d~~~~~W~~~~~~p~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r  112 (308)
T 1zgk_A           37 SLSYLEAYNPSNGTWLRLADLQV---PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP-MSVPR  112 (308)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSS---CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC-CSSCC
T ss_pred             CcceEEEEcCCCCeEeECCCCCc---ccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC-CCcCc
Confidence            34567889999999999977664   2222  23568999999998    444567889999999999999988 78999


Q ss_pred             cceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCC
Q 046692          230 FMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQS  309 (464)
Q Consensus       230 ~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~  309 (464)
                      ..|++++++++|||+||..+         .  ...+++++||+.+++|+.+++||.+|..+++++++             
T Consensus       113 ~~~~~~~~~~~iyv~GG~~~---------~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-------------  168 (308)
T 1zgk_A          113 NRIGVGVIDGHIYAVGGSHG---------C--IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN-------------  168 (308)
T ss_dssp             BTCEEEEETTEEEEECCEET---------T--EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET-------------
T ss_pred             cccEEEEECCEEEEEcCCCC---------C--cccccEEEECCCCCeEeECCCCCccccceEEEEEC-------------
Confidence            99999999999999999532         1  34678999999999999999999999999999886             


Q ss_pred             CCCCccceEEecCcCCCCCCccccccceeeecCCCcccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCC
Q 046692          310 HQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDE  388 (464)
Q Consensus       310 ~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~  388 (464)
                         +  .||++||.++    ...++.+++||+.+++|+. .++|.++..          +++++.+++||++||.+.. .
T Consensus       169 ---~--~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~~~p~~r~~----------~~~~~~~~~iyv~GG~~~~-~  228 (308)
T 1zgk_A          169 ---R--LLYAVGGFDG----TNRLNSAECYYPERNEWRMITAMNTIRSG----------AGVCVLHNCIYAAGGYDGQ-D  228 (308)
T ss_dssp             ---T--EEEEECCBCS----SCBCCCEEEEETTTTEEEECCCCSSCCBS----------CEEEEETTEEEEECCBCSS-S
T ss_pred             ---C--EEEEEeCCCC----CCcCceEEEEeCCCCeEeeCCCCCCcccc----------ceEEEECCEEEEEeCCCCC-C
Confidence               3  3899999865    2448899999999999998 666665432          3456779999999998754 4


Q ss_pred             ccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCC------CceEEEeCCCCcEEEcccCCCCccccc
Q 046692          389 PLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET------DKLAGYDIERGFWIGIQTSPFPPRVIE  459 (464)
Q Consensus       389 ~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~------~~v~~YD~~~~~W~~l~~lp~pr~~~~  459 (464)
                      .++++++||+.+++|+.++++|.++..+. +++++++|||+||.      +.+++||+++++|+.++.||.||..+.
T Consensus       229 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~  304 (308)
T 1zgk_A          229 QLNSVERYDVETETWTFVAPMKHRRSALG-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVG  304 (308)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCE
T ss_pred             ccceEEEEeCCCCcEEECCCCCCCccceE-EEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccce
Confidence            57899999999999999999998877665 45789999999984      579999999999999999999987653
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 464
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 7e-08
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 6e-05
d1zgka1288 b.68.11.1 (A:322-609) Kelch-like ECH-associated pr 2e-04
d1zgka1 288 b.68.11.1 (A:322-609) Kelch-like ECH-associated pr 0.004
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 9e-04
d1k3ia3387 b.69.1.1 (A:151-537) Galactose oxidase, central do 0.001
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 0.002
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (110), Expect = 7e-08
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 143 LPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRF 179
           LPD++L      L L  L+    VCK+W  L +    
Sbjct: 4   LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.97
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.97
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 99.93
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 99.88
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 97.55
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.19
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 95.45
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.33
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 91.9
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 91.81
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 91.14
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 90.08
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 89.06
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 87.78
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 84.92
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 84.84
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 84.67
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 82.28
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 81.62
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 81.2
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 80.74
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-31  Score=253.70  Aligned_cols=253  Identities=19%  Similarity=0.240  Sum_probs=208.0

Q ss_pred             cchhhhhhccccccccccCCchHHHHHhhc--cCCCCeEEEeccccC----CccccceEEeeCCCCceeeccccccCCCc
Q 046692          157 LTSLMNARLVCKKWRYLTTTPRFLQMRREG--LHQNPWLFLFGAVKD----GYCSGEIHALDVSQDQWHRIDASILKGRF  230 (464)
Q Consensus       157 ~~sl~~~~~vck~W~~l~~~~~f~~~r~~~--~~~~~~l~v~GG~~~----~~~~~~v~~yD~~t~~W~~l~~~~~~~R~  230 (464)
                      ...+..|++..++|..+.+.|.   .|..+  ...++.||++||...    ....++++.||+.+++|..+++ ++.+|.
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~---~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~-~p~~r~   93 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQV---PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP-MSVPRN   93 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSS---CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC-CSSCCB
T ss_pred             CceEEEEECCCCeEEECCCCCC---ccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccccc-ccceec
Confidence            3566789999999999987764   33322  366899999999642    2356789999999999999998 889999


Q ss_pred             ceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCC
Q 046692          231 MFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSH  310 (464)
Q Consensus       231 ~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~  310 (464)
                      .|++++++++||++||..+         .  ...+.+++||+.+++|...++++.+|..+++++...             
T Consensus        94 ~~~~~~~~~~i~~~gg~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-------------  149 (288)
T d1zgka1          94 RIGVGVIDGHIYAVGGSHG---------C--IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNR-------------  149 (288)
T ss_dssp             TCEEEEETTEEEEECCEET---------T--EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT-------------
T ss_pred             ceeccccceeeEEecceec---------c--cccceeeeeccccCccccccccccccccceeeeeee-------------
Confidence            9999999999999999532         1  346789999999999999999999999999988763             


Q ss_pred             CCCccceEEecCcCCCCCCccccccceeeecCCCcccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCc
Q 046692          311 QDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEP  389 (464)
Q Consensus       311 ~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~  389 (464)
                           .+|++||.+.    ...+..++.||+.+++|.. ...+.....          .++++.+++||++||.... ..
T Consensus       150 -----~~~~~GG~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~i~GG~~~~-~~  209 (288)
T d1zgka1         150 -----LLYAVGGFDG----TNRLNSAECYYPERNEWRMITAMNTIRSG----------AGVCVLHNCIYAAGGYDGQ-DQ  209 (288)
T ss_dssp             -----EEEEECCBCS----SCBCCCEEEEETTTTEEEECCCCSSCCBS----------CEEEEETTEEEEECCBCSS-SB
T ss_pred             -----cceEecCccc----ccccceEEEeecccccccccccccccccc----------ccccceeeeEEEecCcccc-cc
Confidence                 3899999754    4567789999999999998 333332221          4557788999999998654 56


Q ss_pred             cCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCC------CceEEEeCCCCcEEEcccCCCCcccc
Q 046692          390 LDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET------DKLAGYDIERGFWIGIQTSPFPPRVI  458 (464)
Q Consensus       390 l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~------~~v~~YD~~~~~W~~l~~lp~pr~~~  458 (464)
                      +++.++||+.+++|+.++++|.++..+. +++++++|||+||.      +.+++||+++++|+.+..||.||..|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~  283 (288)
T d1zgka1         210 LNSVERYDVETETWTFVAPMKHRRSALG-ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGV  283 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC
T ss_pred             ccceeeeeecceeeecccCccCcccceE-EEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEeE
Confidence            7899999999999999999998877664 46889999999985      46999999999999999999999866
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure