Citrus Sinensis ID: 046709

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQVPYGAL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccEEEEEccccccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccEcccccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
malsdaviGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRdhhvhnhemckggicwhgvavrspasqvrfrlpqqvpygal
Flexible Loop (DISEMBL)
MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPAsqvrfrlpqqvpygal
Low Complexity Region (SEG)
MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQVPYGAL
Disordered region (IsUnstruct)
*****AVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPA****************
Disordered Region (DISOPRED)
***SDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQ*P****
Disordered Region (DISEMBL)
MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQVPYGAL
Disordered Region (DISPRO)
*ALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQVP***L
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQVPYGAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
255538972	111	conserved hypothetical protein [Ricinus	1.0	0.981	0.828	3e-45
224083071	102	predicted protein [Populus trichocarpa]	0.935	1.0	0.825	5e-41
18410939	125	uncharacterized protein [Arabidopsis tha	1.0	0.872	0.647	2e-36
297839461	122	hypothetical protein ARALYDRAFT_476728 [	1.0	0.893	0.647	3e-36
225457935	106	PREDICTED: uncharacterized protein LOC10	0.935	0.962	0.714	5e-36
356553369	113	PREDICTED: uncharacterized protein LOC10	1.0	0.964	0.654	5e-35
356562415	117	PREDICTED: uncharacterized protein LOC10	1.0	0.931	0.606	1e-33
356517879	109	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.559	3e-28
357438469	112	hypothetical protein MTR_1g025490 [Medic	0.972	0.946	0.495	2e-22
224065799	81	predicted protein [Populus trichocarpa]	0.623	0.839	0.768	3e-20

>gi|255538972|ref|XP_002510551.1| conserved hypothetical protein [Ricinus communis] gi|223551252|gb|EEF52738.1| conserved hypothetical protein [Ricinus communis]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 100/111 (90%), Gaps = 2/111 (1%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           MA+SDAVIGNLTTIYVAVIAGIKAYGLV GRSFS   VLILST++VG++LIG+LTWDVS+
Sbjct: 1   MAVSDAVIGNLTTIYVAVIAGIKAYGLVCGRSFSGGFVLILSTSVVGLILIGSLTWDVSR 60

Query: 61  KAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQ--QVPYGAL 109
           KA YAISRDHH+H HEMCKGGICWHGVAVRSPASQVRFRLPQ  Q  YG L
Sbjct: 61  KATYAISRDHHIHVHEMCKGGICWHGVAVRSPASQVRFRLPQHHQPHYGPL 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083071|ref|XP_002306941.1| predicted protein [Populus trichocarpa] gi|222856390|gb|EEE93937.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 91/103 (88%), Gaps = 1/103 (0%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           MALSDAVIGNLTTIYVAVIAGIK YGLV GRSFS   VLILST +VG++L GTL WD+S+
Sbjct: 1   MALSDAVIGNLTTIYVAVIAGIKVYGLVCGRSFSGGFVLILSTIVVGLILTGTLAWDISR 60

Query: 61  KAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQ 103
           KA YAISRD HV+ HEMCKGGICWHGVAVRSPASQVRFRLPQ 
Sbjct: 61  KATYAISRD-HVNVHEMCKGGICWHGVAVRSPASQVRFRLPQH 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410939|ref|NP_565118.1| uncharacterized protein [Arabidopsis thaliana] gi|6721099|gb|AAF26753.1|AC007396_2 T4O12.4 [Arabidopsis thaliana] gi|37202064|gb|AAQ89647.1| At1g75810 [Arabidopsis thaliana] gi|51971341|dbj|BAD44335.1| hypothetical protein [Arabidopsis thaliana] gi|332197640|gb|AEE35761.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 13/122 (10%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           MALSDAV+GNL TIYVAVI  IKAYGL+TGRSFS+  V+++S T VGV+L  TL WDVS+
Sbjct: 4   MALSDAVLGNLATIYVAVIIAIKAYGLITGRSFSAGFVVVVSITAVGVLLAVTLAWDVSR 63

Query: 61  KAVYAISR----------DHHVHNHE---MCKGGICWHGVAVRSPASQVRFRLPQQVPYG 107
           +A  A+SR           HH H+H+   +CKGGICWHGVAVRSPASQVRFRLPQ +PYG
Sbjct: 64  RAAEAVSRYNRVGGEEDLSHHRHHHDGGAICKGGICWHGVAVRSPASQVRFRLPQHIPYG 123

Query: 108 AL 109
           A 
Sbjct: 124 AF 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839461|ref|XP_002887612.1| hypothetical protein ARALYDRAFT_476728 [Arabidopsis lyrata subsp. lyrata] gi|297333453|gb|EFH63871.1| hypothetical protein ARALYDRAFT_476728 [Arabidopsis lyrata subsp. lyrata]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 93/122 (76%), Gaps = 13/122 (10%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           MALSDAV+GNL TIYVAVI  IKAYGL+TGRSFS+  V+++S T VGV+L  TL WDVS+
Sbjct: 1   MALSDAVLGNLATIYVAVIIAIKAYGLITGRSFSAGFVVVVSITAVGVLLAVTLAWDVSR 60

Query: 61  KAVYAISR----------DHHVHNHE---MCKGGICWHGVAVRSPASQVRFRLPQQVPYG 107
           +A  A+SR           HH H+H+   +CKGGICWHGVAVRSPASQVRFRLPQ +PYG
Sbjct: 61  RAADAVSRYNRVGGEEDLSHHRHHHDGGAICKGGICWHGVAVRSPASQVRFRLPQHIPYG 120

Query: 108 AL 109
           A 
Sbjct: 121 AF 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457935|ref|XP_002273690.1| PREDICTED: uncharacterized protein LOC100245337 [Vitis vinifera]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 85/105 (80%), Gaps = 3/105 (2%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           MA+SDAV+ NLTTIY+  IA IKAYGL TGRSFS   VL+ ST  V ++LIGTL WDVS+
Sbjct: 1   MAISDAVVANLTTIYLVAIAAIKAYGLATGRSFSGGFVLVTSTAAVVLILIGTLAWDVSR 60

Query: 61  KAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQVP 105
           KA YA+SRD   H HEMC+GGICWHGVAV+S ASQVRFRLPQQ P
Sbjct: 61  KATYALSRD---HVHEMCRGGICWHGVAVKSSASQVRFRLPQQPP 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553369|ref|XP_003545029.1| PREDICTED: uncharacterized protein LOC100779434 [Glycine max]

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/113 (65%), Positives = 86/113 (76%), Gaps = 4/113 (3%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           MA+SDAV+ NLT +YVAVIA IKAYG + GRSFS   VL++ST  V ++L+ TLTWDVS+
Sbjct: 1   MAVSDAVMSNLTVLYVAVIACIKAYGFLCGRSFSGWFVLVVSTAAVALILVATLTWDVSR 60

Query: 61  KAVYAISRDH----HVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQVPYGAL 109
           KA YA + D       H HE CKGGICWHGVAVRSPASQVRFRLPQ +PY  L
Sbjct: 61  KATYAFATDQPPPPPHHTHEACKGGICWHGVAVRSPASQVRFRLPQNLPYTTL 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562415|ref|XP_003549467.1| PREDICTED: uncharacterized protein LOC100787853 [Glycine max]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 83/117 (70%), Gaps = 8/117 (6%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           MA+SDAV+ NLT +YVA+I  IKAYG + GRSFS   VL+ ST  V ++L+ TLTWDVS+
Sbjct: 1   MAVSDAVVSNLTLLYVALILSIKAYGFLCGRSFSGCFVLVASTAAVALILVATLTWDVSR 60

Query: 61  KAVYAISRDHHV--------HNHEMCKGGICWHGVAVRSPASQVRFRLPQQVPYGAL 109
           KA YA +             H HE CKGGICWHGVAVRSPASQVRFRLPQ +PY  L
Sbjct: 61  KATYAFAAVQPPPPPPPPPHHTHETCKGGICWHGVAVRSPASQVRFRLPQNLPYTTL 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517879|ref|XP_003527613.1| PREDICTED: uncharacterized protein LOC100814019 [Glycine max]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 76/109 (69%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           MA+SDAV  N +TI+V ++A  +AYG  +GR FS   V+I+ST  V + L+ TLTWDVS+
Sbjct: 1   MAISDAVARNFSTIFVGLMACFEAYGFASGRRFSGGYVVIVSTAAVILFLVATLTWDVSR 60

Query: 61  KAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQVPYGAL 109
           KA  A  RDH     ++CKGGICWHGVA RSPASQVR RLP  +P   L
Sbjct: 61  KATCAFHRDHADSQEDVCKGGICWHGVAPRSPASQVRVRLPSHLPLAPL 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438469|ref|XP_003589510.1| hypothetical protein MTR_1g025490 [Medicago truncatula] gi|355478558|gb|AES59761.1| hypothetical protein MTR_1g025490 [Medicago truncatula]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 5/111 (4%)

Query: 1   MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
           M + D V  NLT IYVAV + +KAY ++ GR FS   V+ +STT+V ++L+ TL WD+S+
Sbjct: 1   MGVCDVVASNLTIIYVAVTSFVKAYEVLYGRRFSGVFVVTVSTTLVALILVATLMWDLSR 60

Query: 61  KAVYAISRDHHV----HN-HEMCKGGICWHGVAVRSPASQVRFRLPQQVPY 106
           K    +  D H     HN    CKGGICWHGVA RSPASQ+ F+LP  +P+
Sbjct: 61  KISKCVFVDQHPRTSQHNTMSYCKGGICWHGVADRSPASQLHFKLPLHLPH 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065799|ref|XP_002301964.1| predicted protein [Populus trichocarpa] gi|222843690|gb|EEE81237.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 62/69 (89%), Gaps = 1/69 (1%)

Query: 1  MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
          MALSDAVIGNLTTIYVAVIAGIKAYGLV GRSFS   VLI+ST +VG++LIGTLTWD+S+
Sbjct: 1  MALSDAVIGNLTTIYVAVIAGIKAYGLVCGRSFSGVFVLIVSTAVVGLILIGTLTWDISR 60

Query: 61 KAV-YAISR 68
          KA+ Y ++R
Sbjct: 61 KAMRYLLAR 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2204335	125	AT1G75810 "AT1G75810" [Arabido	0.990	0.864	0.652	2.7e-36

TAIR|locus:2204335 AT1G75810 "AT1G75810" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 79/121 (65%), Positives = 93/121 (76%)

Query:     1 MALSDAVIGNLTTIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQ 60
             MALSDAV+GNL TIYVAVI  IKAYGL+TGRSFS+  V+++S T VGV+L  TL WDVS+
Sbjct:     4 MALSDAVLGNLATIYVAVIIAIKAYGLITGRSFSAGFVVVVSITAVGVLLAVTLAWDVSR 63

Query:    61 KAVYAISR----------DHHVHNHE---MCKGGICWHGVAVRSPASQVRFRLPQQVPYG 107
             +A  A+SR           HH H+H+   +CKGGICWHGVAVRSPASQVRFRLPQ +PYG
Sbjct:    64 RAAEAVSRYNRVGGEEDLSHHRHHHDGGAICKGGICWHGVAVRSPASQVRFRLPQHIPYG 123

Query:   108 A 108
             A
Sbjct:   124 A 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109       109   0.00091  102 3  11 22  0.38    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.24u 0.06s 10.30t   Elapsed:  00:00:04
  Total cpu time:  10.24u 0.06s 10.30t   Elapsed:  00:00:04
  Start:  Thu May  9 20:01:09 2013   End:  Thu May  9 20:01:13 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V001560 hypothetical protein (102 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	82.89

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=82.89  E-value=0.19  Score=30.17  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=10.5

Q ss_pred             ceeccchhhhhhhcccccccc
Q 046709           55 TWDVSQKAVYAISRDHHVHNH   75 (109)
Q Consensus        55 tWDvSrka~~a~~rdhh~h~h   75 (109)
                      .|...++..+++..|||+|+|
T Consensus       316 G~~aA~~I~~~L~~e~~~~~~  336 (336)
T 3kkj_A          316 GQEAARRLLEHLQLEHHHHHH  336 (336)
T ss_dssp             HHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHhhccCCccCC
Confidence            456677778888889998876

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00