Citrus Sinensis ID: 046715
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | 2.2.26 [Sep-21-2011] | |||||||
| A8WFU8 | 634 | Kinesin-like protein KIF2 | yes | no | 0.502 | 0.397 | 0.334 | 9e-29 | |
| Q3V300 | 660 | Kinesin-like protein KIF2 | yes | no | 0.508 | 0.386 | 0.346 | 1e-28 | |
| Q14807 | 665 | Kinesin-like protein KIF2 | yes | no | 0.508 | 0.383 | 0.342 | 2e-28 | |
| A6QPL4 | 662 | Kinesin-like protein KIF2 | yes | no | 0.508 | 0.385 | 0.342 | 2e-28 | |
| Q5I0E8 | 657 | Kinesin-like protein KIF2 | yes | no | 0.664 | 0.506 | 0.293 | 3e-28 | |
| Q5REP4 | 665 | Kinesin-like protein KIF2 | yes | no | 0.508 | 0.383 | 0.339 | 1e-27 | |
| O59751 | 784 | Kinesin-like protein 6 OS | yes | no | 0.708 | 0.452 | 0.255 | 1e-26 | |
| Q6RZZ9 | 1265 | Kinesin-related protein 1 | yes | no | 0.524 | 0.207 | 0.300 | 2e-26 | |
| O14343 | 883 | Kinesin-like protein 5 OS | no | no | 0.540 | 0.306 | 0.295 | 1e-25 | |
| Q9US60 | 554 | Kinesin-like protein 3 OS | no | no | 0.491 | 0.444 | 0.322 | 9e-25 |
| >sp|A8WFU8|KIF22_DANRE Kinesin-like protein KIF22 OS=Danio rerio GN=kif22 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 138/281 (49%), Gaps = 29/281 (10%)
Query: 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGM 217
YQ F +++Q EV+ V P++ L G++ + A GP+G+GKTHT+ G +PG+
Sbjct: 64 YQ-FDVFHGEETTQQEVFLTSVKPILPHILNGQNASVFAYGPTGAGKTHTMLGSQEQPGV 122
Query: 218 VPIALKRIFK--GTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLL-PDGVDLCMQQST 274
+P A+K +F G K S +S EIY+ EK+LDLL P DL +++
Sbjct: 123 IPRAVKEVFNLVGAQKKEQDGWEYSIGMSYLEIYN-----EKVLDLLSPGSQDLPIREDK 177
Query: 275 -----IKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSR 329
I GL +S A ++ A L R TA T N +SSRS I+ ++ ++ R
Sbjct: 178 DRNILIPGLTHTPLSSFADFDTHFIPASLNRTTASTKLNQRSSRSHAILLIKVVKSQ--R 235
Query: 330 GDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVF---------GLCLRK 380
G L ++DLAG+E +RTGNQG RL ES IN + G R
Sbjct: 236 GPPHRQQTGKLYLVDLAGSEDNRRTGNQGIRLKESGAINLSLFTLSKVVDALNTGAGGRV 295
Query: 381 PLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDT 421
P +++S LTR L+D L G +I + + Y DT
Sbjct: 296 P----YRDSKLTRLLQDSLGGSAHSVMITNIAPEYKYYFDT 332
|
Kinesin family member that is involved in spindle formation and the movements of chromosomes during mitosis and meiosis. Binds to microtubules and to DNA. Danio rerio (taxid: 7955) |
| >sp|Q3V300|KIF22_MOUSE Kinesin-like protein KIF22 OS=Mus musculus GN=Kif22 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q14807|KIF22_HUMAN Kinesin-like protein KIF22 OS=Homo sapiens GN=KIF22 PE=1 SV=5 | Back alignment and function description |
|---|
| >sp|A6QPL4|KIF22_BOVIN Kinesin-like protein KIF22 OS=Bos taurus GN=KIF22 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q5I0E8|KIF22_RAT Kinesin-like protein KIF22 OS=Rattus norvegicus GN=Kif22 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q5REP4|KIF22_PONAB Kinesin-like protein KIF22 OS=Pongo abelii GN=KIF22 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|O59751|KLP6_SCHPO Kinesin-like protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=klp6 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q6RZZ9|KIF13_DICDI Kinesin-related protein 13 OS=Dictyostelium discoideum GN=kif13 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|O14343|KLP5_SCHPO Kinesin-like protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=klp5 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9US60|KLP3_SCHPO Kinesin-like protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=klp3 PE=2 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | ||||||
| 302142689 | 533 | unnamed protein product [Vitis vinifera] | 0.934 | 0.878 | 0.602 | 1e-169 | |
| 225457927 | 1273 | PREDICTED: uncharacterized protein LOC10 | 0.914 | 0.359 | 0.665 | 1e-169 | |
| 224123954 | 555 | predicted protein [Populus trichocarpa] | 0.974 | 0.879 | 0.582 | 1e-166 | |
| 255538982 | 944 | protein with unknown function [Ricinus c | 0.954 | 0.506 | 0.587 | 1e-165 | |
| 449470098 | 894 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.543 | 0.548 | 1e-154 | |
| 297850412 | 960 | hypothetical protein ARALYDRAFT_335256 [ | 0.934 | 0.487 | 0.579 | 1e-149 | |
| 8778993 | 923 | Contains similarity to kinesin from Xeno | 0.860 | 0.466 | 0.585 | 1e-139 | |
| 356517968 | 912 | PREDICTED: uncharacterized protein LOC10 | 0.940 | 0.516 | 0.528 | 1e-134 | |
| 240254119 | 970 | ATP binding microtubule motor family pro | 0.878 | 0.453 | 0.520 | 1e-123 | |
| 222621993 | 845 | hypothetical protein OsJ_04995 [Oryza sa | 0.800 | 0.474 | 0.503 | 1e-110 |
| >gi|302142689|emb|CBI19892.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 333/553 (60%), Positives = 387/553 (69%), Gaps = 85/553 (15%)
Query: 1 METNSPPSTCPKTVAIRRNPHRKARPTPSRSVAIQNPTPATILPQISSFPIDEILSIQIP 60
MET S P CP TV +RRNPHRKAR TPS SV + I +I +FPI EIL++Q+P
Sbjct: 1 METQSSPP-CPYTVTVRRNPHRKARATPSTSVPPRPLLSNPITSEIPAFPIQEILAMQVP 59
Query: 61 QNPSQHKSSSATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDK 120
Q + T SP E L+VFLRI+PLI Q ++ R KN
Sbjct: 60 Q-------TLPTPSP-ENLRVFLRIRPLI----TLQGTKIKRKKN--------------- 92
Query: 121 NVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVN 180
K+ E CI VN+ SVTLSPP L+ KRIKSEVY+GFS+VFSADSSQ EVYE+MV
Sbjct: 93 ----KNSEICIAVNNTQSVTLSPPSHLKDLKRIKSEVYEGFSHVFSADSSQEEVYERMVK 148
Query: 181 PLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRS 240
PLVEDF+ GKSGMLAALGPSGSGKTHT+FGCPREPGMVP+AL++IFK T+ SE+TRS
Sbjct: 149 PLVEDFINGKSGMLAALGPSGSGKTHTVFGCPREPGMVPLALQQIFK-RTEGSGSEATRS 207
Query: 241 FYLSIFEIYSERGKGEKLLDLLPDGVDLCMQQSTIKGLQEIIISDAAQAESLIARAMLKR 300
FY+SIFEIYSERGKGE++LDL P G DL MQQS+IKGLQE++ISD AQAESLIA+ MLKR
Sbjct: 208 FYISIFEIYSERGKGERMLDLSPGGADLFMQQSSIKGLQEVVISDVAQAESLIAQGMLKR 267
Query: 301 ATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGAR 360
TAMTNSN+QSSRSQCIIN+R A N L GV N AVLTI+DLAGAEREKRTGNQGAR
Sbjct: 268 CTAMTNSNSQSSRSQCIINIRSAPNNLESDVGVQLNSAVLTIVDLAGAEREKRTGNQGAR 327
Query: 361 LLESNFINNTSMVFGLCLR----------KPLQKHFQNSLLTRYLRDYLEGKKRMTLILT 410
LLESNFINNTSMVFGLCLR KPLQKHFQNSLLTRYLRDYLEGKKRM LILT
Sbjct: 328 LLESNFINNTSMVFGLCLRSLLEHQRNPKKPLQKHFQNSLLTRYLRDYLEGKKRMALILT 387
Query: 411 VKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSNFLCSKRQLPSLSGKDQLKRVKLSGLE 470
+K GEEDYLDTS+LL+QASPYMKIKF+NVE+ S+ + +KR + +L +Q KR+K S +
Sbjct: 388 IKPGEEDYLDTSFLLKQASPYMKIKFNNVEELSDLVANKRHVRTLPRFEQRKRMKFSNPD 447
Query: 471 AC------------------------------------------SERNDQIMQKFAKAMW 488
AC ERN+QIMQ FAKA+W
Sbjct: 448 ACVVNPEELKETGTVKALVQSPRNSKLDVYDSTFLKLNGVELAKRERNNQIMQGFAKALW 507
Query: 489 NVLKEYNHKLKVM 501
+VLK+Y KL+ +
Sbjct: 508 DVLKQYKEKLEAI 520
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457927|ref|XP_002279681.1| PREDICTED: uncharacterized protein LOC100252261 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224123954|ref|XP_002319205.1| predicted protein [Populus trichocarpa] gi|222857581|gb|EEE95128.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255538982|ref|XP_002510556.1| protein with unknown function [Ricinus communis] gi|223551257|gb|EEF52743.1| protein with unknown function [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449470098|ref|XP_004152755.1| PREDICTED: uncharacterized protein LOC101210482 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297850412|ref|XP_002893087.1| hypothetical protein ARALYDRAFT_335256 [Arabidopsis lyrata subsp. lyrata] gi|297338929|gb|EFH69346.1| hypothetical protein ARALYDRAFT_335256 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|8778993|gb|AAF79908.1|AC022472_17 Contains similarity to kinesin from Xenopus laevis gb|AJ249840 and contains a kinesin motor PF|00225 domain [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356517968|ref|XP_003527656.1| PREDICTED: uncharacterized protein LOC100794655 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|240254119|ref|NP_173434.4| ATP binding microtubule motor family protein [Arabidopsis thaliana] gi|332191808|gb|AEE29929.1| ATP binding microtubule motor family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|222621993|gb|EEE56125.1| hypothetical protein OsJ_04995 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 501 | ||||||
| TAIR|locus:2198611 | 970 | AT1G20060 [Arabidopsis thalian | 0.682 | 0.352 | 0.552 | 6.8e-117 | |
| UNIPROTKB|I3LNN6 | 663 | KIF22 "Uncharacterized protein | 0.602 | 0.455 | 0.332 | 4.8e-28 | |
| UNIPROTKB|B7Z265 | 597 | KIF22 "cDNA FLJ53835, highly s | 0.530 | 0.445 | 0.347 | 6.3e-28 | |
| UNIPROTKB|A6QPL4 | 662 | KIF22 "Kinesin-like protein KI | 0.530 | 0.401 | 0.347 | 6.5e-28 | |
| UNIPROTKB|E2RRZ0 | 664 | KIF22 "Uncharacterized protein | 0.530 | 0.400 | 0.347 | 6.5e-28 | |
| UNIPROTKB|H3BRB3 | 611 | KIF22 "Kinesin-like protein KI | 0.530 | 0.435 | 0.347 | 6.9e-28 | |
| UNIPROTKB|Q14807 | 665 | KIF22 "Kinesin-like protein KI | 0.530 | 0.4 | 0.347 | 9.2e-28 | |
| RGD|1311886 | 657 | Kif22 "kinesin family member 2 | 0.600 | 0.458 | 0.325 | 1.7e-27 | |
| MGI|MGI:109233 | 660 | Kif22 "kinesin family member 2 | 0.514 | 0.390 | 0.350 | 4.1e-27 | |
| ZFIN|ZDB-GENE-080204-34 | 634 | kif22 "kinesin family member 2 | 0.536 | 0.424 | 0.331 | 8.2e-27 |
| TAIR|locus:2198611 AT1G20060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
Identities = 201/364 (55%), Positives = 247/364 (67%)
Query: 5 SPPSTCPKTVAIRRNPHRKARPTPSRSVAIQNPTP--ATILPQ-ISSFPIDEILSIQIPQ 61
SPP CP TV +RRNP R+AR TP + + P A P + +FPIDEILSIQIPQ
Sbjct: 9 SPPP-CPSTVTVRRNPPRRARATPFTTTT-KPPLSSLACAKPHDVPTFPIDEILSIQIPQ 66
Query: 62 NPXXXXXXXXXXXXXETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQXXXXXXXXX--- 118
+ E+LK+FLRIKPL T + SR +NVWPQ
Sbjct: 67 SEPKPAIA-------ESLKIFLRIKPL-RTFTKVTTTTKSRPRNVWPQNPSKKNNAKENR 118
Query: 119 ----XXXXXXXHQEDCITVNDHNSVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEV 174
+E CIT+ND SVTL+PP +LQ KR K+EVY+GFS+VF AD SQ +V
Sbjct: 119 NPEITKKVRKKDEEACITLNDSYSVTLTPPQSLQELKRSKTEVYEGFSHVFPADCSQNDV 178
Query: 175 YEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRS 234
Y+KMV PL+EDF+KGKSGMLAALGPSGSGKTHT+FG ++PG+VPI L++IFK +
Sbjct: 179 YDKMVQPLLEDFMKGKSGMLAALGPSGSGKTHTVFGSLKDPGIVPITLRQIFKKNDE-SC 237
Query: 235 SESTRSFYLSIFEIYSERGKGEKLLDLLP-DGVDLCMQQSTIKGLQEIIISDAAQAESLI 293
S S RSF LSIFEI SERGKGEK DLL + +L +QQSTI+GL+E+ I + +AESLI
Sbjct: 238 SGSLRSFNLSIFEICSERGKGEKAYDLLGGESSELSVQQSTIRGLKEVPIQNLEEAESLI 297
Query: 294 ARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKR 353
+AMLKRATA TNSN+QSSRSQCIIN+R + N S + ++DA+LTI+DLAGAEREKR
Sbjct: 298 GQAMLKRATATTNSNSQSSRSQCIINIRASCNGFSNETKLQSSDAMLTIVDLAGAEREKR 357
Query: 354 TGNQ 357
TGNQ
Sbjct: 358 TGNQ 361
|
|
| UNIPROTKB|I3LNN6 KIF22 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B7Z265 KIF22 "cDNA FLJ53835, highly similar to Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QPL4 KIF22 "Kinesin-like protein KIF22" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RRZ0 KIF22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|H3BRB3 KIF22 "Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q14807 KIF22 "Kinesin-like protein KIF22" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1311886 Kif22 "kinesin family member 22" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:109233 Kif22 "kinesin family member 22" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-080204-34 kif22 "kinesin family member 22" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | GSVIVG00014393001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (584 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 501 | |||
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 3e-84 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 2e-52 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-51 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 3e-48 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 1e-45 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 1e-42 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 1e-40 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 2e-40 | |
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 3e-40 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 3e-37 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 3e-35 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 2e-34 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 4e-32 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 4e-31 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 4e-29 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 1e-28 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 3e-23 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 9e-17 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 5e-11 |
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
Score = 262 bits (673), Expect = 3e-84
Identities = 108/320 (33%), Positives = 167/320 (52%), Gaps = 24/320 (7%)
Query: 127 QEDCITVNDHNSVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDF 186
+E CITV+D+ +VTL+PP + + + F +VF +S+Q +VYE PLVE
Sbjct: 19 EESCITVDDNKTVTLTPPKDGRKAGPKS---FT-FDHVFDPNSTQEDVYETTAKPLVESV 74
Query: 187 LKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTRSFYLSIF 246
L+G +G + A G +GSGKT+T+FG P++PG++P AL+ +F + + + S +S
Sbjct: 75 LEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYL 134
Query: 247 EIYSERGKGEKLLDLL---PDGVDLCMQQS-----TIKGLQEIIISDAAQAESLIARAML 298
EIY EK+ DLL P L +++ +KGL E+ + A A SL+ + +
Sbjct: 135 EIY-----NEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLK 189
Query: 299 KRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQG 358
R TA T N +SSRS I + + DG + L ++DLAG+ER K+TG +G
Sbjct: 190 NRTTASTAMNERSSRSHAIFTIHVEQRNTT-NDGRSIKSSKLNLVDLAGSERAKKTGAEG 248
Query: 359 ARLLESNFINNTSMVFGLCLRKPLQKH------FQNSLLTRYLRDYLEGKKRMTLILTVK 412
RL E+ IN + G + +++S LTR L+D L G + +I +
Sbjct: 249 DRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANIS 308
Query: 413 SGEEDYLDTSYLLRQASPYM 432
E+Y +T LR AS
Sbjct: 309 PSSENYDETLSTLRFASRAK 328
|
This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 98.01 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 94.46 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 94.27 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 93.84 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.36 | |
| PRK06620 | 214 | hypothetical protein; Validated | 92.34 | |
| PRK12377 | 248 | putative replication protein; Provisional | 91.81 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 91.0 | |
| PRK06526 | 254 | transposase; Provisional | 90.96 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 90.94 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.92 | |
| PRK09087 | 226 | hypothetical protein; Validated | 90.72 | |
| PRK08116 | 268 | hypothetical protein; Validated | 90.36 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 89.97 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 89.79 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 89.63 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 88.87 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 88.66 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 88.55 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 88.21 | |
| PRK08181 | 269 | transposase; Validated | 87.93 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 87.81 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 87.73 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 87.62 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 87.54 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 87.01 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 86.9 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 86.77 | |
| PRK08727 | 233 | hypothetical protein; Validated | 85.94 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 85.51 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 85.4 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 85.38 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 84.79 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 84.45 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 84.0 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 83.94 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 83.82 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 83.06 | |
| PF01935 | 229 | DUF87: Domain of unknown function DUF87; InterPro: | 82.9 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 82.72 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 82.61 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 82.37 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 82.29 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 81.95 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 81.92 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 81.56 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 81.39 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 81.39 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 81.35 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 81.25 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 80.73 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 80.69 |
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-85 Score=722.86 Aligned_cols=331 Identities=27% Similarity=0.405 Sum_probs=296.5
Q ss_pred CCCCCCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCccccc
Q 046715 71 ATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQT 149 (501)
Q Consensus 71 ~~~~~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~ 149 (501)
......-||+|+|||||++..| .......+|.+++ ++.|.+...-...
T Consensus 43 ~~~e~~~NIqVivRcRp~n~~E------------------------------~~~~s~~VVs~~~~~kEV~v~~~~~sk- 91 (1041)
T KOG0243|consen 43 DHKEKEVNIQVIVRCRPRNDRE------------------------------RKSKSSVVVSCDGIRKEVAVRQTIASK- 91 (1041)
T ss_pred CCCCCCCceEEEEEeCCCCchh------------------------------hhcCCCeEEecCCCcceEEEecccccc-
Confidence 3444568999999999999888 2445666777777 6668887651111
Q ss_pred cccccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCccccccc--------CCCCCCCchhH
Q 046715 150 SKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFG--------CPREPGMVPIA 221 (501)
Q Consensus 150 ~~~~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G--------~~~~~GIipr~ 221 (501)
. ..+.|+||+||+|++.|.+||+.+|.|+|+.|+.|||||||||||||+||||||.| .+.+.|||||+
T Consensus 92 --~--~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRa 167 (1041)
T KOG0243|consen 92 --Q--IDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRA 167 (1041)
T ss_pred --c--ccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHH
Confidence 1 23569999999999999999999999999999999999999999999999999999 56789999999
Q ss_pred HHHHHhhcccccCCCccceEEEEEEEEeeccCCCcceeccCCCCcc--------------cccccccccCceEEEecCHH
Q 046715 222 LKRIFKGTTKIRSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVD--------------LCMQQSTIKGLQEIIISDAA 287 (501)
Q Consensus 222 ~~~LF~~~~~~~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~--------------~~~~~~~v~~l~~~~v~s~~ 287 (501)
+.+||+.+.. .+..|+|+|||+|+||| .|+|||++... ...+++.|+||.++.|.++.
T Consensus 168 l~~IFd~Le~---~~~EYsvKVSfLELYNE-----El~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ 239 (1041)
T KOG0243|consen 168 LRQIFDTLEA---QGAEYSVKVSFLELYNE-----ELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNAD 239 (1041)
T ss_pred HHHHHHHHHh---cCCeEEEEEEehhhhhH-----HHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchh
Confidence 9999999887 45899999999999998 99999976432 23356789999999999999
Q ss_pred HHHHHHHHhhccccccccCCCCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHH
Q 046715 288 QAESLIARAMLKRATAMTNSNNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFI 367 (501)
Q Consensus 288 e~~~ll~~g~~~R~~~~t~~n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~I 367 (501)
|++.+|.+|.++|++++|.||..|||||+||+|+|........+..-.+.|+|+||||||||-+.++|+.+.|.+|++.|
T Consensus 240 ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~I 319 (1041)
T KOG0243|consen 240 EIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEI 319 (1041)
T ss_pred HHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhh
Confidence 99999999999999999999999999999999999887666555556788999999999999999999999999999999
Q ss_pred hhhHHHHHHHhc----CCCCcccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch
Q 046715 368 NNTSMVFGLCLR----KPLQKHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS 443 (501)
Q Consensus 368 N~SL~~L~~vi~----~~~~vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~ 443 (501)
|+||++||+||+ ...|||||+|||||||||||||.++|+|||||||+..+++||++||.||.|||+|+|+|.+|+.
T Consensus 320 NqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk 399 (1041)
T KOG0243|consen 320 NQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK 399 (1041)
T ss_pred hHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence 999999999998 7899999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 046715 444 N 444 (501)
Q Consensus 444 ~ 444 (501)
-
T Consensus 400 l 400 (1041)
T KOG0243|consen 400 L 400 (1041)
T ss_pred H
Confidence 3
|
|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown | Back alignment and domain information |
|---|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 501 | ||||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 3e-29 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 4e-25 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 2e-24 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 4e-24 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-23 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 2e-23 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 1e-22 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-22 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 9e-22 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 9e-22 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 1e-21 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 1e-21 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 1e-21 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 1e-21 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 1e-21 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 1e-21 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 2e-20 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-20 | ||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-20 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 7e-20 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 8e-20 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 1e-19 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 2e-19 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 5e-19 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 2e-18 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-18 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 2e-18 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 2e-17 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 2e-17 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 2e-17 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 3e-17 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 3e-17 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 3e-17 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 1e-16 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 1e-16 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 2e-16 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 4e-16 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 7e-16 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 8e-16 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 9e-16 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 1e-15 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 3e-15 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 3e-15 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 3e-14 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 6e-14 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 7e-14 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 8e-14 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 8e-14 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-13 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-13 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 3e-12 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 4e-12 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 5e-12 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-11 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-11 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 2e-11 |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
|
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 3e-50
Identities = 100/380 (26%), Positives = 158/380 (41%), Gaps = 61/380 (16%)
Query: 57 IQIPQNPSQHKSSSATSSPSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNA 116
+ + S + + P ++V +R++P
Sbjct: 1 MHHHHHHSSGRENLYFQGPPARVRVAVRLRPF--------VDGT---------------- 36
Query: 117 VKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYE 176
C+ D S+ ++ Q + + YQ F + S+Q ++Y
Sbjct: 37 ------AGASDPPCVRGMDSCSLEIANWRNHQETLK-----YQ-FDAFYGERSTQQDIYA 84
Query: 177 KMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSE 236
V P++ L+G++ + A GP+G+GKTHT+ G P +PG++P AL + + T + +
Sbjct: 85 GSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEG 144
Query: 237 STRSF--YLSIFEIYSERGKGEKLLDLL-PDGVDLCMQQS-----TIKGLQEIIISDAAQ 288
+ +S EIY EK+LDLL P DL +++ I GL + IS A
Sbjct: 145 RPWALSVTMSYLEIYQ-----EKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFAD 199
Query: 289 AESLIARAMLKRATAMTNSNNQSSRSQCI--INLRCAANELSRGDGVHANDAVLTIIDLA 346
E A R T N +SSRS + + + R + L +IDLA
Sbjct: 200 FERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR----ERLAPFRQREGKLYLIDLA 255
Query: 347 GAEREKRTGNQGARLLESNFINNTSMVFGLC---LRKPLQKH--FQNSLLTRYLRDYLEG 401
G+E +RTGN+G RL ES IN + V G L + +++S LTR L+D L G
Sbjct: 256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG-LPRVPYRDSKLTRLLQDSLGG 314
Query: 402 KKRMTLILTVKSGEEDYLDT 421
LI + YLDT
Sbjct: 315 SAHSILIANIAPERRFYLDT 334
|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 100.0 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 100.0 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 100.0 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 100.0 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 100.0 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 100.0 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 100.0 | |
| 2owm_A | 443 | Nckin3-434, related to kinesin-like protein KIF1C; | 100.0 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 100.0 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 100.0 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 100.0 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 100.0 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 100.0 | |
| 1ry6_A | 360 | Internal kinesin; kinesin motor domain, nucleotide | 100.0 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 100.0 | |
| 2rep_A | 376 | Kinesin-like protein KIFC1; structural genomics co | 100.0 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 100.0 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 100.0 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 100.0 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 100.0 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 100.0 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 100.0 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 100.0 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 100.0 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 100.0 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 100.0 | |
| 4h1g_A | 715 | Maltose binding protein-cakar3 motor domain fusio; | 100.0 | |
| 2o0a_A | 298 | S.cerevisiae chromosome XVI reading frame ORF YPL2 | 99.93 | |
| 2kin_B | 100 | Kinesin; motor protein, cytoskeleton; HET: ADP; 2. | 99.93 | |
| 3kin_B | 117 | Kinesin heavy chain; motor protein, cytoskeleton; | 99.92 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.23 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.1 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 92.75 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 88.62 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 87.67 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 87.6 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 86.7 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 86.58 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 86.14 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 85.77 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 85.71 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 85.31 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 85.3 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 85.27 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 84.78 | |
| 4etp_B | 333 | Spindle POLE BODY-associated protein VIK1; kinesin | 84.77 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 84.47 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 84.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 83.36 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 83.24 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 82.87 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 81.9 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 81.59 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 81.57 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 81.47 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 81.43 | |
| 4gkp_A | 275 | Spindle POLE BODY-associated protein VIK1; kinesin | 80.51 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 80.34 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 80.3 |
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-87 Score=687.84 Aligned_cols=333 Identities=26% Similarity=0.412 Sum_probs=264.0
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcC-CceEEecCCcccccc-cc
Q 046715 75 PSETLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVND-HNSVTLSPPLALQTS-KR 152 (501)
Q Consensus 75 ~~~~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~l~~p~~~~~~-~~ 152 (501)
.+++|+||||+||+...| ...+...|+.+++ ..+|.+.+|...... ..
T Consensus 2 ~~~~i~V~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~ 51 (350)
T 2vvg_A 2 SSDNIKVIVRCRPLNARE------------------------------TRENALNIIRMDEASAQVIVDPPEQEKSATQA 51 (350)
T ss_dssp --CBCEEEEEECCCCHHH------------------------------HHTTCCBCEEEEGGGTEEEECC----------
T ss_pred CCCCeEEEEEeCCCChhh------------------------------hccCCceEEEEcCCCCEEEEeecccccccccc
Confidence 358999999999998766 2345566777764 668888876542211 11
Q ss_pred ccceeeecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccc
Q 046715 153 IKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKI 232 (501)
Q Consensus 153 ~~~~~~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~ 232 (501)
....+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.+..
T Consensus 52 ~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~- 130 (350)
T 2vvg_A 52 KKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINS- 130 (350)
T ss_dssp ----EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHT-
T ss_pred CCCceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHh-
Confidence 2235679999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCCccceEEEEEEEEeeccCCCcceeccCCCCcccccc-----cccccCceEEEecCHHHHHHHHHHhhccccccccCC
Q 046715 233 RSSESTRSFYLSIFEIYSERGKGEKLLDLLPDGVDLCMQ-----QSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNS 307 (501)
Q Consensus 233 ~~~~~~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~~~~-----~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~ 307 (501)
...+..|.|++||+||||| +|+|||.+...+.++ +.+|.|++++.|.+++|++.+|..|.++|++++|.+
T Consensus 131 ~~~~~~~~v~vS~~EIYnE-----~i~DLL~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 205 (350)
T 2vvg_A 131 SSSNQNFLVIGSYLELYNE-----EIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQM 205 (350)
T ss_dssp CCTTEEEEEEEEEEEEETT-----EEEETTTTEEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC-------
T ss_pred hccCCcEEEEEEEEEEeCC-----EEEEcccCCcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccC
Confidence 3556789999999999998 999999876666554 468999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----CCCC
Q 046715 308 NNQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----KPLQ 383 (501)
Q Consensus 308 n~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~~~~ 383 (501)
|..|||||+||+|+|.+.....+. .....|+|+|||||||||..++++.|.+++|+..||+||++||+||. +..|
T Consensus 206 N~~SSRSH~if~i~v~~~~~~~~~-~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~h 284 (350)
T 2vvg_A 206 NDTSSRSHSIFMVRIECSEVIENK-EVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATH 284 (350)
T ss_dssp ---CTTCEEEEEEEEEEEEC-----CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCcceEEEEEEEEEeeccCCC-ccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999887644322 23456999999999999999999999999999999999999999997 6689
Q ss_pred cccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCchh
Q 046715 384 KHFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSSN 444 (501)
Q Consensus 384 vpyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~~ 444 (501)
|||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|++++|++.
T Consensus 285 vPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~ 345 (350)
T 2vvg_A 285 IPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345 (350)
T ss_dssp CCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSC
T ss_pred CCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCc
Confidence 9999999999999999999999999999999999999999999999999999999988653
|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
| >4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} | Back alignment and structure |
|---|
| >2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
| >4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A | Back alignment and structure |
|---|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 501 | ||||
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 2e-36 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 1e-35 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 3e-35 | |
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 3e-34 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 7e-34 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 2e-33 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 6e-30 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 6e-29 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 1e-28 |
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (339), Expect = 2e-36
Identities = 84/364 (23%), Positives = 141/364 (38%), Gaps = 57/364 (15%)
Query: 80 KVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSV 139
KV R +PL ++ ++ + ++V
Sbjct: 8 KVMCRFRPLN------------------------------ESEVNRGDKYIAKFQGEDTV 37
Query: 140 TLSPPLALQTSKRIKSEVYQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGP 199
I S+ Y F VF + +SQ +VY +V+D L+G +G + A G
Sbjct: 38 V------------IASKPYA-FDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQ 84
Query: 200 SGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSESTR--SFYLSIFEIYSERGKGEK 257
+ SGKTHT+ G +P + I + + I S + +S FEIY + K
Sbjct: 85 TSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLD--KIRD 142
Query: 258 LLDLLPDGVDLCMQQS---TIKGLQEIIISDAAQAESLIARAMLKRATAMTNSNNQSSRS 314
LLD+ + + ++ +KG E + + I R A+TN N SSRS
Sbjct: 143 LLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRS 202
Query: 315 QCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVF 374
I + + L ++DLAG+E+ +TG +GA L E+ IN +
Sbjct: 203 HSIFLINVKQENTQTEQKLSGK---LYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSAL 259
Query: 375 GLCLRKPLQKH----FQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASP 430
G + + +++S +TR L+D L G R T+++ + +T L
Sbjct: 260 GNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR 319
Query: 431 YMKI 434
I
Sbjct: 320 AKTI 323
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 501 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.82 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.88 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.46 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.27 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.09 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.09 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.23 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 86.78 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.02 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 85.98 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.9 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 85.81 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 84.69 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 83.35 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 81.98 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 81.67 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 80.89 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.21 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=5.8e-80 Score=637.32 Aligned_cols=331 Identities=25% Similarity=0.359 Sum_probs=281.6
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCccccccCcccccccccccccccCCCCccEEEEcCCceEEecCCcccccccccccee
Q 046715 78 TLKVFLRIKPLIYPKTGYQNSRPSRAKNVWPQNSVKKNAVKDKNVKSKHQEDCITVNDHNSVTLSPPLALQTSKRIKSEV 157 (501)
Q Consensus 78 ~ikV~vRiRPl~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~l~~p~~~~~~~~~~~~~ 157 (501)
+|||||||||+...| ...+...++.+.++.++....... ..+
T Consensus 1 rIkV~vRvRP~~~~E------------------------------~~~~~~~~v~~~~~~~~~~~~~~~--------~~~ 42 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKE------------------------------IIAKERNAIRSVDEFTVEHLWKDD--------KAK 42 (364)
T ss_dssp CCEEEEEECCCCHHH------------------------------HHTTCCBCEEECSTTEEEEECSSS--------SEE
T ss_pred CeEEEEEcCCCChhh------------------------------cccCCCCeEEeCCCCeEEecCCCC--------Cce
Confidence 589999999998655 234455667777766665543221 235
Q ss_pred eecccccCCCCCchhHHHHhhhhhHHHHHhcCCCeEEEeccCCCCCcccccccCCCCCCCchhHHHHHHhhcccccCCCc
Q 046715 158 YQGFSYVFSADSSQGEVYEKMVNPLVEDFLKGKSGMLAALGPSGSGKTHTIFGCPREPGMVPIALKRIFKGTTKIRSSES 237 (501)
Q Consensus 158 ~f~FD~Vf~~~~sQ~evf~~~v~plv~~~l~G~n~tI~aYGqTgSGKTyTm~G~~~~~GIipr~~~~LF~~~~~~~~~~~ 237 (501)
.|.||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.+.+ .....
T Consensus 43 ~f~FD~vf~~~~~q~~vy~~-v~~lv~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~-~~~~~ 120 (364)
T d1sdma_ 43 QHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKK-DSNKF 120 (364)
T ss_dssp EEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHH-GGGTE
T ss_pred EEECCeecCCCCCHHHHHHH-HHHHHHHHhcCCceeeeccccCCCCcccccccCccccchhHHHHHHHHhhhhh-ccccc
Confidence 69999999999999999997 58999999999999999999999999999999999999999999999999887 44567
Q ss_pred cceEEEEEEEEeeccCCCcceeccCCCCccc---------ccccccccCceEEEecCHHHHHHHHHHhhccccccccCCC
Q 046715 238 TRSFYLSIFEIYSERGKGEKLLDLLPDGVDL---------CMQQSTIKGLQEIIISDAAQAESLIARAMLKRATAMTNSN 308 (501)
Q Consensus 238 ~~~v~vS~~EIynE~~~~e~i~DLL~~~~~~---------~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n 308 (501)
.|.|++||+||||| .++|||.+.... ...+.+|.|++++.|.+++|++.+|..|.++|.+++|.+|
T Consensus 121 ~~~v~~S~~EIyne-----~i~DLL~~~~~~~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n 195 (364)
T d1sdma_ 121 SFSLKAYMVELYQD-----TLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMN 195 (364)
T ss_dssp EEEEEEEEEEESSS-----CEEETTSCTTSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTT
T ss_pred cceEEEEEEEEecc-----ccccccCcccccccccceeecccCccccccceeeeeCCHHHHHHHhhccceeecccccccc
Confidence 89999999999998 999999764321 2245789999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEeeeeccCCCccccccceeEeeecCCCccccccCCcchhhhHHHHHhhhHHHHHHHhc----CCCCc
Q 046715 309 NQSSRSQCIINLRCAANELSRGDGVHANDAVLTIIDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLR----KPLQK 384 (501)
Q Consensus 309 ~~SSRSH~If~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~----~~~~v 384 (501)
..|||||+||+|++.+...... ....++|+|||||||||..++++.|.+++|+..||+||++|++||. +..||
T Consensus 196 ~~ssRsH~i~~i~v~~~~~~~~---~~~~~kl~~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~i 272 (364)
T d1sdma_ 196 EQSSRSHLIVSVIIESTNLQTQ---AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHI 272 (364)
T ss_dssp CHHHHSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHHHTCSCC
T ss_pred ccccccceEEEEEEEEeccCcc---eeeeEEEEeechhhccccccccccCceeeeccccccchhhHHHHHHHHHcCCCcC
Confidence 9999999999999988765433 2455899999999999999999999999999999999999999997 77899
Q ss_pred ccCcchhhhhchhccCCCceEEEEeecCCCCCChHHHHHHHHhHhhcccCccccccCch--hhhhhhhhccchh
Q 046715 385 HFQNSLLTRYLRDYLEGKKRMTLILTVKSGEEDYLDTSYLLRQASPYMKIKFDNVEDSS--NFLCSKRQLPSLS 456 (501)
Q Consensus 385 pyRdSkLT~LL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~ra~~Ik~~~v~~~~--~~~~~~~~~~~l~ 456 (501)
|||+||||+||+|+|||||+|+|||||||+..+++||++||+||++|++|+|+++.|.. ++..++++++.|+
T Consensus 273 pyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~~~~~~l~~~i~~l~ 346 (364)
T d1sdma_ 273 PYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWK 346 (364)
T ss_dssp CGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEECHHHHHHHTTTTCC-
T ss_pred CchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887744 4556777777773
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|