Citrus Sinensis ID: 046720

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MNDIGIDTGESYEEARLGQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHRGEIVRKEYVCSKEGATTKEVVEKKRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAIKHKDCYPDFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFMIRFNRALNHQRHEELNANHADIMKNLL
cccccccccccccccccccEEccHHHHHHHHHHHHccccEEEEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccccccEEEcccccccccHHHHccccEEEEEEcccccccccEEEEEEEEccccccEEEEEccccccccHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHcccccccccccccHHHHHHcccccccccccccHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccccEEEccHHHHHHHHHHHHHHcccEEEEEcEEEccccEEEEEEEEEcccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEcccccccccHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEccHHHHHHHHcccEEEEEccEccccccccEEEEEEEcccccEEEEEEHHHccccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mndigidtgesyeeARLGQEFVLLDDVHEFYNEYAKKVGFSVrinssrkshrgeivrkeyvcskegattKEVVEKKRRCSKVREGCKAKLAVVKSKSGTYVVSVFEedhnhplttprrVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLElqgggiqnigclgkdlyndetksknkvkghdaDMLLEHFQlekeknsafTFTIEsdnenrithcfwadatsrrgynsfgDVVVFDTtyntnkygmifapfigvnnhgqTTVFACSFLSDETTESFVWLFEQFKkampgdlpkmiitdqdPAITKAISetlpntfhRYCIWHILNKFSDKihaikhkdcypdfqKCIWkslsrddfdRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFsagmsssqrAESCHSFFKRYVSKKNSLLDFMIRFNRALNHQRHEELNANHADIMKNLL
mndigidtgesyeeaRLGQEFVLLDDVHEFYNEYAkkvgfsvrinssrkshrgeivrkeyvcskegattkevvekkrrcskvregckaklavvksksgTYVVSVfeedhnhplttprrvhlLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWadatsrrgynSFGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAIKHKDCYPDFQKCIWKSLSRDDFDRNWLEIiekgklrdnaWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFMIRFNRALNHQRheelnanhadimknll
MNDIGIDTGESYEEARLGQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHRGEIVRKEYVCSKEGATTKEVVEKKRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAIKHKDCYPDFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFMIRFNRALNHQRHEELNANHADIMKNLL
**************ARLGQEFVLLDDVHEFYNEYAKKVGFSVRIN*******GEIVRKEYVCSKEG*****VV***RRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYN***************MLLEHFQLEK*KNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAIKHKDCYPDFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGM******ESCHSFFKRYVSKKNSLLDFMIRFNRALN*******************
********GESYEEARLGQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHRGEIVRKEYVCSKEG*****************EGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAIKHKDCYPDFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFMIRFNRALNHQRHEELNANHADIMK*L*
MNDIGIDTGESYEEARLGQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHRGEIVRKEYVCSKEGAT***************EGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAIKHKDCYPDFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSA***********HSFFKRYVSKKNSLLDFMIRFNRALNHQRHEELNANHADIMKNLL
**********SYEEARLGQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHRGEIVRKEYVCSKE******************EGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAIKHKDCYPDFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFMIRFNRALNHQRHEELNANHADIM****
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MNDIGIDTGESYEEARLGQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHRGEIVRKEYVCSKEGATTKEVVEKKRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAIKHKDCYPDFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFMIRFNRALNHQRHEELNANHADIMKNLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query455 2.2.26 [Sep-21-2011]
Q9SZL8 788 Protein FAR1-RELATED SEQU yes no 0.942 0.544 0.373 2e-79
Q9SWG3 827 Protein FAR-RED IMPAIRED no no 0.967 0.532 0.356 4e-74
Q9LIE5 839 Protein FAR-RED ELONGATED no no 0.918 0.498 0.316 2e-64
Q6NQJ7 732 Protein FAR1-RELATED SEQU no no 0.914 0.568 0.337 1e-62
Q9M8J3 764 Protein FAR1-RELATED SEQU no no 0.837 0.498 0.299 1e-55
Q9ZVC9 851 Protein FAR1-RELATED SEQU no no 0.909 0.486 0.298 1e-54
Q3E7I5 788 Protein FAR1-RELATED SEQU no no 0.837 0.483 0.304 1e-53
Q9LKR4 685 Putative protein FAR1-REL no no 0.881 0.585 0.300 3e-51
Q9SSQ4 703 Protein FAR1-RELATED SEQU no no 0.934 0.604 0.283 2e-50
Q9SY66 680 Protein FAR1-RELATED SEQU no no 0.885 0.592 0.287 7e-48
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1 Back     alignment and function desciption
 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/439 (37%), Positives = 251/439 (57%), Gaps = 10/439 (2%)

Query: 18  GQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHR-GEIVRKEYVCSKEG------ATTK 70
           G EF   +    FYN YA+++GFS R++SSR+S R G I+++++VC+KEG        TK
Sbjct: 76  GLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTK 135

Query: 71  EVVEKKRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSE 130
           +  E KR  +  R GCKA L+V    SG ++VS F +DHNH L  P +VH LRSHR +S 
Sbjct: 136 DR-EIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISG 194

Query: 131 VKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGHDADMLL 190
             ++L   L AA +   + +S L  + GGI  +G    D  N    ++ K    +  +LL
Sbjct: 195 PAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIEGEIQLLL 254

Query: 191 EHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMI 250
           ++ +     N  F ++++   +  + + FWAD  +   +  FGD V FDTTY +N+Y + 
Sbjct: 255 DYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLP 314

Query: 251 FAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAI 310
           FAPF GVN+HGQ  +F C+F+ +ET  SFVWLF  +  AM    P  I TD D  I  AI
Sbjct: 315 FAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSITTDHDAVIRAAI 374

Query: 311 SETLPNTFHRYCIWHILNKFSDKIHAI--KHKDCYPDFQKCIWKSLSRDDFDRNWLEIIE 368
               P   HR+C WHIL K  +K+  +  KH     DF KC+  + S +DF+R W  +++
Sbjct: 375 MHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLD 434

Query: 369 KGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFM 428
           K +LRD+ WL++++  R +WVP  +   F A MS + R++S +S+F  Y++   +L  F 
Sbjct: 435 KYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFF 494

Query: 429 IRFNRALNHQRHEELNANH 447
             + +AL  +  +E+ A++
Sbjct: 495 KLYEKALESRLEKEVKADY 513
Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1 Back     alignment and function description
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2 Back     alignment and function description
>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LKR4|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2 Back     alignment and function description
>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
124359207 800 FAR1; Zinc finger, SWIM-type [Medicago t 0.958 0.545 0.404 2e-93
115447811 766 Os02g0668200 [Oryza sativa Japonica Grou 0.951 0.565 0.387 5e-90
222623408 805 hypothetical protein OsJ_07864 [Oryza sa 0.951 0.537 0.387 6e-90
295841810 718 unnamed protein product [Solanum lycoper 0.969 0.614 0.377 4e-88
46063440 1510 putative Mutator-like transposase [Oryza 0.958 0.288 0.388 8e-88
242039985 558 hypothetical protein SORBIDRAFT_01g02691 0.942 0.768 0.391 9e-88
222631315 748 hypothetical protein OsJ_18260 [Oryza sa 0.958 0.582 0.388 1e-87
54287612 896 hypothetical protein [Oryza sativa Japon 0.958 0.486 0.388 2e-87
7673677 709 transposase [Zea mays] 0.947 0.607 0.380 1e-85
357443771 1950 Cysteine-rich receptor-like protein kina 0.907 0.211 0.386 2e-83
>gi|124359207|gb|ABN05718.1| FAR1; Zinc finger, SWIM-type [Medicago truncatula] Back     alignment and taxonomy information
 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/452 (40%), Positives = 268/452 (59%), Gaps = 16/452 (3%)

Query: 17  LGQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHRGEIVRKEYVCSKEGATTKEVVEK- 75
           +G+ F  L +  +FY  YA   GFSVR NS +   +  +  K ++CSKEG   ++ V+K 
Sbjct: 94  IGKVFDTLVEGGDFYKAYAYVAGFSVR-NSIKTKDKDGVKWKYFLCSKEGFKEEKKVDKP 152

Query: 76  -----------KRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRS 124
                       R+    REGCKA+L + ++  G Y VS F E H+H L +P +   LRS
Sbjct: 153 QLLIAENSLSKSRKRKLTREGCKARLVLKRTIDGKYEVSNFYEGHSHGLVSPSKRQFLRS 212

Query: 125 HRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNKVKGH 184
            RNV+ V +++      AN+   +   +++ Q G  +NIGC  +DL N     K  +K  
Sbjct: 213 ARNVTSVHKNILFSCNRANVGTSKSYQIMKEQVGSYENIGCTQRDLQNYSRNLKELIKDS 272

Query: 185 DADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNT 244
           DADM +++F+ ++E N +F +  E+DNE ++ H FWAD   R+ Y+ FGDVV FDTTY T
Sbjct: 273 DADMFIDNFRRKREINPSFFYDYEADNEGKLKHVFWADGICRKNYSLFGDVVSFDTTYRT 332

Query: 245 NKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDP 304
           NKY MIFAPF G+N+H Q+  F  + L +E  ESFVWLFE F KAM G  P MIITDQD 
Sbjct: 333 NKYFMIFAPFTGINHHRQSITFGAALLKNEKEESFVWLFETFLKAMGGHKPVMIITDQDG 392

Query: 305 AITKAISETLPNTFHRYCIWHILNKFSDKI-HAIKHKDCYPD-FQKCIWKSLSRDDFDRN 362
            +  AI   L  + HR+C+WHIL K S+K+  ++     + D F+ C+W S S ++FD  
Sbjct: 393 GMKNAIGAVLKGSSHRFCMWHILKKLSEKVGSSMDENSGFNDRFKSCVWNSESSEEFDLE 452

Query: 363 WLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSAG-MSSSQRAESCHSFFKRYVSKK 421
           W  II    L  N WL +++++RS W+PA     F AG + ++ R+ES +SFF  Y++  
Sbjct: 453 WNNIISDYSLEGNGWLSTMYDLRSMWIPAYFKDTFMAGILRTTSRSESENSFFGNYLNHN 512

Query: 422 NSLLDFMIRFNRALNHQRHEELNANHADIMKN 453
            +L++F +RF+ AL  QRH+EL A++  +  N
Sbjct: 513 LTLVEFWVRFDSALAAQRHKELFADNNTLHSN 544

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|115447811|ref|NP_001047685.1| Os02g0668200 [Oryza sativa Japonica Group] gi|113537216|dbj|BAF09599.1| Os02g0668200 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222623408|gb|EEE57540.1| hypothetical protein OsJ_07864 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|295841810|dbj|BAJ06702.1| unnamed protein product [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|46063440|gb|AAS79743.1| putative Mutator-like transposase [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242039985|ref|XP_002467387.1| hypothetical protein SORBIDRAFT_01g026910 [Sorghum bicolor] gi|241921241|gb|EER94385.1| hypothetical protein SORBIDRAFT_01g026910 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|222631315|gb|EEE63447.1| hypothetical protein OsJ_18260 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|54287612|gb|AAV31356.1| hypothetical protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|7673677|gb|AAF66982.1| transposase [Zea mays] Back     alignment and taxonomy information
>gi|357443771|ref|XP_003592163.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355481211|gb|AES62414.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2121060 788 FRS5 "FAR1-related sequence 5" 0.953 0.550 0.373 6.6e-81
TAIR|locus:2129665 827 FAR1 "FAR-RED IMPAIRED RESPONS 0.962 0.529 0.360 6.5e-74
TAIR|locus:2014639 732 FRS4 "FAR1-related sequence 4" 0.923 0.573 0.336 6e-64
TAIR|locus:2082420 764 FRS7 "FAR1-related sequence 7" 0.617 0.367 0.324 1.8e-57
TAIR|locus:2062606 807 FRS2 "FAR1-related sequence 2" 0.558 0.314 0.332 2.3e-57
TAIR|locus:2090394 839 FHY3 "far-red elongated hypoco 0.949 0.514 0.310 4.5e-57
TAIR|locus:2144930 788 FRS12 "FAR1-related sequence 1 0.617 0.356 0.328 2.7e-55
TAIR|locus:2035144 703 FRS6 "FAR1-related sequence 6" 0.931 0.603 0.285 5.1e-51
TAIR|locus:2059304 851 FRS3 "FAR1-related sequence 3" 0.859 0.459 0.308 4.2e-49
TAIR|locus:2012828 680 FRS11 "FAR1-related sequence 1 0.898 0.601 0.302 4.7e-48
TAIR|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 166/445 (37%), Positives = 257/445 (57%)

Query:    18 GQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHR-GEIVRKEYVCSKEG---ATTKEVV 73
             G EF   +    FYN YA+++GFS R++SSR+S R G I+++++VC+KEG      K   
Sbjct:    76 GLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTK 135

Query:    74 EK--KRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEV 131
             ++  KR  +  R GCKA L+V    SG ++VS F +DHNH L  P +VH LRSHR +S  
Sbjct:   136 DREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGP 195

Query:   132 KRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKSKNK-VKGHDADMLL 190
              ++L   L AA +   + +S L  + GGI  +G    D  N    ++ K ++G +  +LL
Sbjct:   196 AKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIEG-EIQLLL 254

Query:   191 EHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVVVFDTTYNTNKYGMI 250
             ++ +     N  F ++++   +  + + FWAD  +   +  FGD V FDTTY +N+Y + 
Sbjct:   255 DYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLP 314

Query:   251 FAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAI 310
             FAPF GVN+HGQ  +F C+F+ +ET  SFVWLF  +  AM    P  I TD D  I  AI
Sbjct:   315 FAPFTGVNHHGQPILFGCAFIINETEASFVWLFNTWLAAMSAHPPVSITTDHDAVIRAAI 374

Query:   311 SETLPNTFHRYCIWHILNKFSDKI-HA-IKHKDCYPDFQKCIWKSLSRDDFDRNWLEIIE 368
                 P   HR+C WHIL K  +K+ H  +KH     DF KC+  + S +DF+R W  +++
Sbjct:   375 MHVFPGARHRFCKWHILKKCQEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLD 434

Query:   369 KGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFM 428
             K +LRD+ WL++++  R +WVP  +   F A MS + R++S +S+F  Y++   +L  F 
Sbjct:   435 KYELRDHEWLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFF 494

Query:   429 IRFNRALNHQRHEELNANHADIMKN 453
               + +AL  +  +E+ A++ D M +
Sbjct:   495 KLYEKALESRLEKEVKADY-DTMNS 518
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009639 "response to red or far red light" evidence=ISS
TAIR|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012828 FRS11 "FAR1-related sequence 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
4330261
transposon protein, putative, unclassified (766 aa)
(Oryza sativa Japonica)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
PLN03097 846 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY 2e-86
pfam1055188 pfam10551, MULE, MULE transposase domain 1e-29
pfam0310190 pfam03101, FAR1, FAR1 DNA-binding domain 9e-26
pfam00872381 pfam00872, Transposase_mut, Transposase, Mutator f 0.003
>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
 Score =  281 bits (720), Expect = 2e-86
 Identities = 148/452 (32%), Positives = 241/452 (53%), Gaps = 50/452 (11%)

Query: 18  GQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSHRG-EIVRKEYVCSKEGATTKEVVEK- 75
           G EF    + + FY EYA+ +GF+  I +SR+S    E +  ++ CS+ G  TK   +K 
Sbjct: 77  GMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYG--TKREYDKS 134

Query: 76  ------------------KRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPR 117
                             +R C+K    CKA + V +   G +V+  F ++HNH L   +
Sbjct: 135 FNRPRARQTKQDPENGTGRRSCAKT--DCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQ 192

Query: 118 RVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLGKDLYNDETKS 177
            V         SE  R +   +A               Q    +N+  L  D  +   K 
Sbjct: 193 AV---------SEQTRKMYAAMAR--------------QFAEYKNVVGLKNDSKSSFDKG 229

Query: 178 KN-KVKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNSFGDVV 236
           +N  ++  D  +LL+ F   +  NS F + ++   + R+ + FW DA SR  Y +F DVV
Sbjct: 230 RNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVV 289

Query: 237 VFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPK 296
            FDTTY  NKY M  A F+GVN H Q  +  C+ +SDE+  ++ WL + + +AM G  PK
Sbjct: 290 SFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPK 349

Query: 297 MIITDQDPAITKAISETLPNTFHRYCIWHILNKFSDKIHAI--KHKDCYPDFQKCIWKSL 354
           +IITDQD A+   ISE  PN  H + +WHIL K S+ +  +  +H++    F+KCI++S 
Sbjct: 350 VIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSW 409

Query: 355 SRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWVPACVNHVFSAGMSSSQRAESCHSFF 414
           + ++F + W +I+++ +L+++ W++S++E R +WVP  +   F AGMS+ QR+ES ++FF
Sbjct: 410 TEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFF 469

Query: 415 KRYVSKKNSLLDFMIRFNRALNHQRHEELNAN 446
            +YV KK ++ +F+ ++   L  +  EE  A+
Sbjct: 470 DKYVHKKTTVQEFVKQYETILQDRYEEEAKAD 501

Length = 846
>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain Back     alignment and domain information
>gnl|CDD|217369 pfam03101, FAR1, FAR1 DNA-binding domain Back     alignment and domain information
>gnl|CDD|216166 pfam00872, Transposase_mut, Transposase, Mutator family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
PLN03097 846 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis 100.0
PF00872381 Transposase_mut: Transposase, Mutator family; Inte 99.91
PF1055193 MULE: MULE transposase domain; InterPro: IPR018289 99.88
PF0310191 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 99.79
COG3328379 Transposase and inactivated derivatives [DNA repli 99.65
PF08731111 AFT: Transcription factor AFT; InterPro: IPR014842 99.51
PF0310867 DBD_Tnp_Mut: MuDR family transposase; InterPro: IP 99.06
PF01610249 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut 97.45
PF0310660 WRKY: WRKY DNA -binding domain; InterPro: IPR00365 96.94
PF06782470 UPF0236: Uncharacterised protein family (UPF0236); 96.54
PF13610140 DDE_Tnp_IS240: DDE domain 96.2
PF0450062 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00 95.33
smart0077459 WRKY DNA binding domain. The WRKY domain is a DNA 95.28
PF04684496 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact 93.77
PF00665120 rve: Integrase core domain; InterPro: IPR001584 In 92.01
PF03050271 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: 89.27
PF04937153 DUF659: Protein of unknown function (DUF 659); Int 87.38
COG3316215 Transposase and inactivated derivatives [DNA repli 86.8
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.6e-84  Score=659.74  Aligned_cols=422  Identities=34%  Similarity=0.654  Sum_probs=379.9

Q ss_pred             CCcccCCCCCCccCCHHHHHHHHHHHhcccCeEEEEeceecCC-CCcEEEEEEEecCCCCcccccc----c---------
Q 046720            9 GESYEEARLGQEFVLLDDVHEFYNEYAKKVGFSVRINSSRKSH-RGEIVRKEYVCSKEGATTKEVV----E---------   74 (455)
Q Consensus         9 ~~~~~~p~~g~~F~s~~e~~~~~~~ya~~~gf~i~~~~s~~~~-~~~~~~~~~~C~r~g~~~~~~~----~---------   74 (455)
                      ++...+|.+||+|+|.|||++||+.||...||+||+.+|++++ ++.++.++|+|+|+|+++...+    .         
T Consensus        68 ~~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~  147 (846)
T PLN03097         68 EDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDP  147 (846)
T ss_pred             CCCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCc
Confidence            4577899999999999999999999999999999999999887 7789999999999998643211    0         


Q ss_pred             --ccccccccccCCccEEEEEEccCCcEEEEEEecCCCCCCCCccccccccccCCCCHHHHHhHHHHhhcCCCcchhhHH
Q 046720           75 --KKRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLTTPRRVHLLRSHRNVSEVKRSLTHQLAAANIPIHQQISV  152 (455)
Q Consensus        75 --~~r~~~s~~~gCpa~i~~~~~~~~~w~v~~~~~~HNH~~~~~~~~~~~~~~r~ls~~~~~~i~~l~~~g~~~~~I~~~  152 (455)
                        .+++++.+|+||||+|.+++..+|+|.|+.+..+|||++.++...         +.              .++.++..
T Consensus       148 ~~~~~rR~~tRtGC~A~m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~---------~~--------------~~r~~~~~  204 (846)
T PLN03097        148 ENGTGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAV---------SE--------------QTRKMYAA  204 (846)
T ss_pred             ccccccccccCCCCceEEEEEEcCCCeEEEEEEecCCCCCCCCcccc---------ch--------------hhhhhHHH
Confidence              012345689999999999987689999999999999999865321         11              12223333


Q ss_pred             HhhccCCccccccccccccchhhhhccc-ccCCCHHHHHHHHHHhhhcCCCeEEEEeecCCCceeeeEecccccchhhhh
Q 046720          153 LELQGGGIQNIGCLGKDLYNDETKSKNK-VKGHDADMLLEHFQLEKEKNSAFTFTIESDNENRITHCFWADATSRRGYNS  231 (455)
Q Consensus       153 l~~~~g~~~~~~~t~~di~n~~~~~r~~-~~~~d~~~l~~~l~~~~~~~p~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~  231 (455)
                      +....++..++..+..|..|...+.|.. +..+|++.|++|+++++.+||+|+|.+++|+++++++|||+++.++..|..
T Consensus       205 ~~~~~~~~~~v~~~~~d~~~~~~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~  284 (846)
T PLN03097        205 MARQFAEYKNVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGN  284 (846)
T ss_pred             HHhhhhccccccccchhhcchhhHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHh
Confidence            3344444556666667777776666644 788999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEeeeeccccCCceeeeEEEEeeCCcceeehhhhccCcchhhHHHHHHHHHHHCCCCCCceEecCcCHHHHHHHH
Q 046720          232 FGDVVVFDTTYNTNKYGMIFAPFIGVNNHGQTTVFACSFLSDETTESFVWLFEQFKKAMPGDLPKMIITDQDPAITKAIS  311 (455)
Q Consensus       232 ~~~v~~~D~t~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~p~~ii~D~~~~~~~ai~  311 (455)
                      |||||.+|+||.+|+|++||+.|+|+|+||+++++|+||+.+|+.++|.|+|+.|++.|++..|.+||||++.++.+||.
T Consensus       285 FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~  364 (846)
T PLN03097        285 FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVIS  364 (846)
T ss_pred             cCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCcCccchhhhHHHHHHHhhhcccCC--CCchhhHHhhhccCCCHHHHHHHHHHHHHHcCCCchHHHHHHHhhccccc
Q 046720          312 ETLPNTFHRYCIWHILNKFSDKIHAIKH--KDCYPDFQKCIWKSLSRDDFDRNWLEIIEKGKLRDNAWLKSVFEIRSKWV  389 (455)
Q Consensus       312 ~vfp~~~~~~C~~Hi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~W~  389 (455)
                      +|||++.|++|.|||.+|+.+++.....  +.+..+|.+||+.+.+++||+..|..|+++|++..++||..+|+.|++||
T Consensus       365 ~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWa  444 (846)
T PLN03097        365 EVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWV  444 (846)
T ss_pred             HHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhh
Confidence            9999999999999999999999987643  78999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHhchHhhhhhc
Q 046720          390 PACVNHVFSAGMSSSQRAESCHSFFKRYVSKKNSLLDFMIRFNRALNHQRHEELNANHADIMKN  453 (455)
Q Consensus       390 ~~~~~~~~~~~~~Ttn~~Es~n~~lk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (455)
                      ++|+++.+++|+.||+++||+|+.||+++++.++|.+|+++|+.++..++++|++||++++++.
T Consensus       445 paY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~  508 (846)
T PLN03097        445 PTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQ  508 (846)
T ss_pred             HHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999998764

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ] Back     alignment and domain information
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants Back     alignment and domain information
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis Back     alignment and domain information
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ] Back     alignment and domain information
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element Back     alignment and domain information
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif Back     alignment and domain information
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function Back     alignment and domain information
>PF13610 DDE_Tnp_IS240: DDE domain Back     alignment and domain information
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00774 WRKY DNA binding domain Back     alignment and domain information
>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication Back     alignment and domain information
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known Back     alignment and domain information
>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function Back     alignment and domain information
>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 89/602 (14%), Positives = 171/602 (28%), Gaps = 209/602 (34%)

Query: 7   DTGE---SYEE--ARLGQEFVL-LD--DVHEFYNEYAKKVGFSVRINSSRKSHRGEIVRK 58
           +TGE    Y++  +     FV   D  DV +       K      I S           +
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK---DAVSGTLR 66

Query: 59  --EYVCSKEGATTKEVVEKKRR------CSKVREGCKAKLAVVKSKSGTYVVSVFEEDHN 110
               + SK+    ++ VE+  R       S ++   +    + +          + E  +
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM---------YIEQRD 117

Query: 111 HPLTTPRRV---HLLRSHRNVSEVKRSLTHQLAAANIPIHQQISVLELQGGGIQNIGCLG 167
                 +     ++ R  +   +++++L     A N+ I          G      G  G
Sbjct: 118 RLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLID---------GVL----GS-G 162

Query: 168 K-----DLYND---ETKSKNKV------KGHDADMLLEHFQ---LEKEKNSAFTFTIESD 210
           K     D+      + K   K+        +  + +LE  Q    + + N    +T  SD
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN----WTSRSD 218

Query: 211 NENRITHCF--WADATSR----RGY-NSF---GDV----VV--FD-------TTYNTNKY 247
           + + I            R    + Y N      +V        F+       TT      
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-- 276

Query: 248 GMIFAPFIGVNNHGQTTV--FACSFLSDETTESFVWLFEQFKKAMPGDLPK--------- 296
                 F+        ++   + +   DE       L  ++    P DLP+         
Sbjct: 277 ---VTDFLSAATTTHISLDHHSMTLTPDEVKS----LLLKYLDCRPQDLPREVLTTNPRR 329

Query: 297 --MI---ITD-----------QDPAITKAISETL----PNTFHRY--------------- 321
             +I   I D               +T  I  +L    P  + +                
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 322 ---CI-W---------HILNKFSDK-------------IHAI-------------KHK-- 340
               + W          ++NK                 I +I              H+  
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 341 -DCYPDFQKCIWKSLSRDDFDRNW-------LEIIEKGKLRDNAWLKSVF-EIRSKWVPA 391
            D Y   +      L     D+ +       L+ IE  +       + VF + R  ++  
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT--LFRMVFLDFR--FLEQ 505

Query: 392 CVNHVFSAGMSSSQRAESCH--SFFKRYVSKK--------NSLLDFMIRFNRALNHQRHE 441
            + H  +A  +S     +     F+K Y+           N++LDF+ +    L   ++ 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565

Query: 442 EL 443
           +L
Sbjct: 566 DL 567

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
2ayd_A76 WRKY transcription factor 1; beta strands, zinc fi 96.95
1wj2_A78 Probable WRKY transcription factor 4; DNA-binding 96.74
2rpr_A87 Flywch-type zinc finger-containing protein 1; flyw 95.68
3kks_A152 Integrase, IN; beta-strands flanked by alpha-helic 81.3
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=96.95  E-value=0.004  Score=43.63  Aligned_cols=57  Identities=25%  Similarity=0.485  Sum_probs=44.0

Q ss_pred             cCeEEEEeceecCCCCcEEEEEEEecCCCCcccccccccccccccccCCccEEEEEEcc-CCcEEEEEEecCCCCCC
Q 046720           38 VGFSVRINSSRKSHRGEIVRKEYVCSKEGATTKEVVEKKRRCSKVREGCKAKLAVVKSK-SGTYVVSVFEEDHNHPL  113 (455)
Q Consensus        38 ~gf~i~~~~s~~~~~~~~~~~~~~C~r~g~~~~~~~~~~r~~~s~~~gCpa~i~~~~~~-~~~w~v~~~~~~HNH~~  113 (455)
                      =||.+|+--.+..++...-+-+|.|+..                   |||++=.+.+.. ++...++.+..+|||++
T Consensus        16 DGy~WRKYGQK~ikgs~~PRsYYrCt~~-------------------gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   73 (76)
T 2ayd_A           16 DGYRWRKYGQKSVKGSPYPRSYYRCSSP-------------------GCPVKKHVERSSHDTKLLITTYEGKHDHDM   73 (76)
T ss_dssp             CSSCEEEEEEECCTTCSSCEEEEEECST-------------------TCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred             CCchhhhCcccccCCCCCceeEeEcCCC-------------------CCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence            4777777666655544455678899853                   599999998886 77888888999999986
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Back     alignment and structure
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
d1wj2a_71 WRKY DNA-binding protein 4 {Thale cress (Arabidops 97.04
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.00052  Score=45.57  Aligned_cols=57  Identities=26%  Similarity=0.469  Sum_probs=42.2

Q ss_pred             cCeEEEEeceecCCCCcEEEEEEEecCCCCcccccccccccccccccCCccEEEEEEcc-CCcEEEEEEecCCCCCC
Q 046720           38 VGFSVRINSSRKSHRGEIVRKEYVCSKEGATTKEVVEKKRRCSKVREGCKAKLAVVKSK-SGTYVVSVFEEDHNHPL  113 (455)
Q Consensus        38 ~gf~i~~~~s~~~~~~~~~~~~~~C~r~g~~~~~~~~~~r~~~s~~~gCpa~i~~~~~~-~~~w~v~~~~~~HNH~~  113 (455)
                      =||.+|+--.+.-++....+-+|.|+..                   ||||+=.+.... ++.-.++.+..+|||++
T Consensus        12 DGy~WRKYGQK~ikgs~~pRsYYrCt~~-------------------~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          12 DGYRWRKYGQKVVKGNPYPRSYYKCTTP-------------------GCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             SSSCBCCCEEECCTTCSSCEEEEEEECS-------------------SCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             CCcEecccCceeccCCCCceEEEEcccc-------------------CCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            3666665555544444455778999964                   599999998887 77778888999999975