Citrus Sinensis ID: 046732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
Protein Sequence
MSHIISKIRKRKRKDEQVGYEDDDDDDNNDDECYDSSGNESPRPSSSSEEGGGGKKKDLNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETERVKRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSGQHRRLWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEEEccEEEEEccccccHHHHccccccccccccccEEEEEEEcccccEEEEEcccccccccHHHHHccHHHHHHHcccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccccccccccccccHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHccccccccEEEEEccEEEEEcccHHHHHHccccEEEEcccccEEEEEEEEEccccEEEEEEEcccccccHHHHHHHcHHHHHHccccccccEEEEcccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MSHIISKIRKrkrkdeqvgyeddddddnnddecydssgnesprpsssseeggggkkkdlNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETERVKRKKSRSLATSVAAITAIAADDSLQAEKQVkqgtggagsgqhrrlWVKDRSKawwdecnrpdypeeeFKKWFRMRRQTFDMICEELNSVIAKedttlrnaipvRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVlmpkylqwpdddALRKIKDEFEVIsgipnvvgsmytthvpiiapkISVAAYFNKrhternqktsySITVQgvvnpngaftdvcigwpgsmpddqvleKSALYQRASGGLLkgvwivggsgyplmdwvlvpytqqhlTWTQHAFNEKIGEIQRVSKDAFARLKGRwcclqkrtevklqdlpvvLGACCVLHNICEMMneeldpelafdlvddemvPEVALRSVSSMKTRDSIAHNLLhhglagtafl
Flexible Loop (DISEMBL)
mshiiskirkrkrkdeqvgyeddddddnnDDECydssgnesprpsssseeggggkkkDLNGIITSLLLLEEQEKGDQDAQKKASaeeksffeanhrnkkkTMLEYYSNIQDYYAEVQEtervkrkksrslATSVAAITaiaaddslQAEKQVKqgtggagsgqhrrlwvkdrskawwdecnrpdypeeefKKWFRMRRQTFDMICEELNSViakedttlrnaipvrqRVAVCIWRlatgeplrlVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHternqktsysiTVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKrtevklqdlpvVLGACCVLHNICEMMNEELDPELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLlhhglagtafl
Low Complexity Region (SEG)
MSHiiskirkrkrkDEQVGYEddddddnnddECYDssgnesprpsssseeggggKKKDLNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETERVKRKKSRSlatsvaaitaiaaddslQAEKQVKQGTGGAGSGQHRRLWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL
Disordered region (IsUnstruct)
**************************************************************ITSLL**********************************MLEYYSNIQDYYAEV*****************VAAITAI*************************RLWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDEMVPEVAL************AHNLLHH********
Disordered Region (DISOPRED)
*************************************************************IITSLLL***********************EAN************************************************************************LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDD***************TRDSIAHNLLHHG*A***FL
Disordered Region (DISEMBL)
***************************NNDD************************KKDLNGIITSLLLLEEQ****************SFFEANHRNKKKTMLEYYSNIQDYYAEVQE**************SVAAITAIAADDSLQA******************LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL
Disordered Region (DISPRO)
********************************************************KDLNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETERVKRKK******SVAAITAIAADDS*****************QHRRLWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHIISKIRKRKRKDEQVGYEDDDDDDNNDDECYDSSGNESPRPSSSSEEGGGGKKKDLNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETERVKRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSGQHRRLWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	516	2.2.26 [Sep-21-2011]
Q17QR8	349	Putative nuclease HARBI1	yes	no	0.548	0.810	0.264	1e-18
B0BN95	349	Putative nuclease HARBI1	yes	no	0.548	0.810	0.260	4e-18
Q96MB7	349	Putative nuclease HARBI1	yes	no	0.548	0.810	0.257	6e-18
Q8BR93	349	Putative nuclease HARBI1	yes	no	0.552	0.816	0.259	1e-17
Q6AZB8	349	Putative nuclease HARBI1	no	no	0.348	0.515	0.284	3e-15
Q5U538	347	Putative nuclease HARBI1	N/A	no	0.344	0.512	0.260	1e-09

>sp|Q17QR8|HARB1_BOVIN Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 20/303 (6%)

Query: 167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
           L +  R     D     D  +E     +   RQ    + E L + +++     R   P  
Sbjct: 12  LLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGASLSRPTQRSRAISPET 71

Query: 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LR 285
           Q +A   +  +     R+     G+  ++  + V  V  A+      +++ +P D+A ++
Sbjct: 72  QILAALGFYTSGSFQTRM-GDAIGISQASMSRCVANVTEALVE-RASQFIHFPADEASVQ 129

Query: 286 KIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNP 345
            +KDEF  ++GIP V+G +   HV I AP     +Y N+       K  +S+    V + 
Sbjct: 130 ALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDI 182

Query: 346 NGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQH 405
            GA   V   WPGS+ D  VL++S+L  +   G+ K  W++G S + L  W++ P    H
Sbjct: 183 RGALMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRTWLMTPL---H 239

Query: 406 L--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVL 459
           +  T  ++ +N        V +  F  L  R+ CL   ++  LQ  P     ++ ACCVL
Sbjct: 240 IPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEKSSHIILACCVL 298

Query: 460 HNI 462
           HNI
Sbjct: 299 HNI 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|B0BN95|HARB1_RAT Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 20/303 (6%)

Query: 167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
           L +  R     D     D  +E     +   RQ    + E L + +++     R   P  
Sbjct: 12  LLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGASLSRPTQRSRAISPET 71

Query: 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LR 285
           Q +A  +    +G     +    G+  ++  + V  V  A+      +++ +P D+A ++
Sbjct: 72  QILAA-LGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVER-ASQFIHFPADEAAIQ 129

Query: 286 KIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNP 345
            +KDEF  ++G+P V+G++   HV I AP     +Y N+       K  +S+    V + 
Sbjct: 130 SLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYVNR-------KGLHSLNCLVVCDI 182

Query: 346 NGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQH 405
            GA   V   WPGS+ D  VL++S+L  +   G+ K  W++G S + L  W+L P    H
Sbjct: 183 RGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSFFLHTWLLTPL---H 239

Query: 406 L--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVL 459
           +  T  ++ +N        V +     L  R+ CL   ++  LQ  P     ++ ACCVL
Sbjct: 240 IPETPAEYRYNRAHSATHSVIEKTLRTLCCRFRCLDG-SKGALQYSPEKSSHIILACCVL 298

Query: 460 HNI 462
           HNI
Sbjct: 299 HNI 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q96MB7|HARB1_HUMAN Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 20/303 (6%)

Query: 167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
           L +  R     D     D  +E     +   RQ    + E L + +++  T    AI   
Sbjct: 12  LLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGANLSRP-TQRSRAISPE 70

Query: 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LR 285
            +V   +    +G     +    G+  ++  + V  V  A+      +++++P D+A ++
Sbjct: 71  TQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVER-ASQFIRFPADEASIQ 129

Query: 286 KIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNP 345
            +KDEF  ++G+P V+G +   HV I AP     +Y N+       K  +S+    V + 
Sbjct: 130 ALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDI 182

Query: 346 NGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQH 405
            G    V   WPGS+ D  VL++S+L  +   G+ K  W++G S + L  W++ P    H
Sbjct: 183 RGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFFLRTWLMTPL---H 239

Query: 406 L--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVL 459
           +  T  ++ +N        V +  F  L  R+ CL   ++  LQ  P     ++ ACCVL
Sbjct: 240 IPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEKSSHIILACCVL 298

Query: 460 HNI 462
           HNI
Sbjct: 299 HNI 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q8BR93|HARB1_MOUSE Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 131/301 (43%), Gaps = 16/301 (5%)

Query: 167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
           L +  R     D     D  +E     +   RQ    + E L + +++     R   P  
Sbjct: 12  LLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYFLVELLGASLSRPTQRSRAISPET 71

Query: 227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWP-DDDALR 285
           Q +A  +    +G     +    G+  ++  + V  V  A+      +++ +P D+ A++
Sbjct: 72  QILAA-LGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVE-RASQFIHFPVDEAAVQ 129

Query: 286 KIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNP 345
            +KDEF  ++G+P V+G     HV I AP     +Y N+       K  +S+    V + 
Sbjct: 130 SLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDLSYVNR-------KGLHSLNCLVVCDI 182

Query: 346 NGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQH 405
            GA   V   WPGS+ D  VL++S+L  +   G+ K  W++G S + L  W+L P     
Sbjct: 183 RGALMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFFLRSWLLTPLPIPE 242

Query: 406 LTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVLHN 461
            T  ++ +N        V +     L  R+ CL   ++  LQ  P     ++ ACCVLHN
Sbjct: 243 -TAAEYRYNRAHSATHSVIERTLQTLCCRFRCLDG-SKGALQYSPEKCSHIILACCVLHN 300

Query: 462 I 462
           I
Sbjct: 301 I 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6AZB8|HARB1_DANRE Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 17/197 (8%)

Query: 273 PKYLQWPDDDALRK-IKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQ 331
           P+++ +  D+A ++  KDEF  I+GIPNV G +   H+ I AP    ++Y NK       
Sbjct: 116 PEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCAHIAIKAPNADDSSYVNK------- 168

Query: 332 KTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKS---ALYQRASGGLLKGVWIVGG 388
           K  +SI  Q V +  G        WPGS+ D  V ++S    L++          W++G 
Sbjct: 169 KGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVAKLFEEQEND--DEGWLLGD 226

Query: 389 SGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCL---QKRTEVK 445
           + YPL  W++ P  Q   +   + +N        +    F  ++ R+ CL   +   +  
Sbjct: 227 NRYPLKKWLMTP-VQSPESPADYRYNLAHTTTHEIVDRTFRAIQTRFRCLDGAKGYLQYS 285

Query: 446 LQDLPVVLGACCVLHNI 462
            +    ++ ACCVLHNI
Sbjct: 286 PEKCSHIIQACCVLHNI 302

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5U538|HARB1_XENLA Putative nuclease HARBI1 OS=Xenopus laevis GN=harbi1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 18/196 (9%)

Query: 274 KYLQWPDDD-ALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQK 332
           +++ +P D+ +++ +KDEF  ++G+P V+G +  T V I AP     +Y N R       
Sbjct: 117 QFISFPRDERSVQGLKDEFYNLAGVPGVLGVVDCTQVNIKAPNSEDLSYVNSRGL----- 171

Query: 333 TSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYP 392
             +S+    V +  G+         GSM D+ VL +S L       + K  W++  + + 
Sbjct: 172 --HSLNCLLVCDARGSLLWAETSRLGSMQDNAVLHQSELSGLFETKMHKQGWLLADNAFI 229

Query: 393 LMDWVLVPY------TQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKL 446
           L  W++ P       +         A +  +   QR  +  F  L G    LQ   E   
Sbjct: 230 LRPWLMTPVQIPESPSDYRYNMAHTATHSVMERTQRSLRLRFRCLDGSRATLQYSPEKSA 289

Query: 447 QDLPVVLGACCVLHNI 462
           Q    ++ ACC+LHNI
Sbjct: 290 Q----IVLACCILHNI 301

Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
343887274	515	hypothetical protein [Citrus unshiu]	0.998	1.0	0.992	0.0
224092160	507	predicted protein [Populus trichocarpa]	0.949	0.966	0.750	0.0
224113883	465	predicted protein [Populus trichocarpa]	0.901	1.0	0.792	0.0
225429570	484	PREDICTED: uncharacterized protein LOC10	0.922	0.983	0.741	0.0
255550093	498	conserved hypothetical protein [Ricinus	0.939	0.973	0.719	0.0
356552466	534	PREDICTED: uncharacterized protein LOC10	0.874	0.844	0.765	0.0
356563940	536	PREDICTED: putative nuclease HARBI1-like	0.885	0.852	0.772	0.0
449447145	496	PREDICTED: putative nuclease HARBI1-like	0.879	0.915	0.771	0.0
357437265	1056	hypothetical protein MTR_1g015070 [Medic	0.885	0.432	0.742	0.0
15239835	502	uncharacterized protein [Arabidopsis tha	0.887	0.912	0.702	0.0

>gi|343887274|dbj|BAK61820.1| hypothetical protein [Citrus unshiu]

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/516 (99%), Positives = 514/516 (99%), Gaps = 1/516 (0%)

Query: 1   MSHIISKIRKRKRKDEQVGYEDDDDDDNNDDECYDSSGNESPRPSSSSEEGGGGKKKDLN 60
           MSHIISKIRKRKRKDEQVGYEDDDDDDN+D ECYDSSGNESPRPSSSSEEGGGGKKKDLN
Sbjct: 1   MSHIISKIRKRKRKDEQVGYEDDDDDDNDD-ECYDSSGNESPRPSSSSEEGGGGKKKDLN 59

Query: 61  GIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETE 120
           GIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETE
Sbjct: 60  GIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETE 119

Query: 121 RVKRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSGQHRRLWVKDRSKAWWDEC 180
           RVKRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSGQHRRLWVKDRSKAWWDEC
Sbjct: 120 RVKRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSGQHRRLWVKDRSKAWWDEC 179

Query: 181 NRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGE 240
           NRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGE
Sbjct: 180 NRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGE 239

Query: 241 PLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNV 300
           PLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNV
Sbjct: 240 PLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNV 299

Query: 301 VGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSM 360
           VGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNG FTDVCIGWPGSM
Sbjct: 300 VGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGVFTDVCIGWPGSM 359

Query: 361 PDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEI 420
           PDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEI
Sbjct: 360 PDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEI 419

Query: 421 QRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVD 480
           QRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEE+DPELAFDLVD
Sbjct: 420 QRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEEMDPELAFDLVD 479

Query: 481 DEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           DEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL
Sbjct: 480 DEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 515

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092160|ref|XP_002309488.1| predicted protein [Populus trichocarpa] gi|222855464|gb|EEE93011.1| predicted protein [Populus trichocarpa]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/513 (75%), Positives = 422/513 (82%), Gaps = 23/513 (4%)

Query: 4   IISKIRKRKRKDEQVGYEDDDDDDNNDDECYDSSGNESPRPSSSSEEGGGGKKKDLNGII 63
           + S  +KR+RK+++ G    +D D ND               S  ++G   KKK+L GII
Sbjct: 18  MFSNSKKRQRKEDRQG----NDSDGND---------------SFEQDGREKKKKNLKGII 58

Query: 64  TSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETERVK 123
           TSL+LLE+QEK DQ+ Q KAS EEK   EANH  + KTM+EYY   QDY+ EVQETER K
Sbjct: 59  TSLILLEQQEKSDQEEQSKASNEEKVLLEANHNKRIKTMVEYYDKFQDYHVEVQETERRK 118

Query: 124 RKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSGQHRRLWVKDRSKAWWDECNRP 183
           RK SR++A ++A  T      + +  K  K G    G GQ RRLWVKDR K WWD+CNRP
Sbjct: 119 RKNSRAIAGALAVSTVSNGVAAREGIKDTKHG----GGGQQRRLWVKDRDKEWWDDCNRP 174

Query: 184 DYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLR 243
           DYPEEEFKK FRM + TFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLR
Sbjct: 175 DYPEEEFKKAFRMSKSTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLR 234

Query: 244 LVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGS 303
           LVSKRFGLGISTCHKLVLEVC+AIRSVLMPKYLQWPD+D LRKIK+EFE ISGIPN VGS
Sbjct: 235 LVSKRFGLGISTCHKLVLEVCSAIRSVLMPKYLQWPDEDGLRKIKNEFESISGIPNAVGS 294

Query: 304 MYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDD 363
           MYTTH+PIIAPKISVAAYFNKRHTERNQKTSYSITVQGVV+P G FTDVCIGWPGSMPDD
Sbjct: 295 MYTTHIPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDPKGIFTDVCIGWPGSMPDD 354

Query: 364 QVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRV 423
           QVLEKSAL+QRA+GGLLK VWIVG SGYPLMDWVLVPY QQ+LTWTQHAFNEKIGEIQ V
Sbjct: 355 QVLEKSALFQRANGGLLKDVWIVGTSGYPLMDWVLVPYAQQNLTWTQHAFNEKIGEIQLV 414

Query: 424 SKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDEM 483
           +KDAFARLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICEM NEE+DPEL  +LVDDEM
Sbjct: 415 AKDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICEMQNEEIDPELRVELVDDEM 474

Query: 484 VPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           VPEVALRS +SMK RD+IAHNLLHH  AGT FL
Sbjct: 475 VPEVALRSATSMKARDAIAHNLLHHCHAGTRFL 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113883|ref|XP_002332479.1| predicted protein [Populus trichocarpa] gi|222832470|gb|EEE70947.1| predicted protein [Populus trichocarpa]

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/467 (79%), Positives = 402/467 (86%), Gaps = 2/467 (0%)

Query: 50  EGGGGKKKDLNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNI 109
           +G   KKK L G ITSL+LLE+QEK DQ+ Q  AS EEK  FEANH+ + KTM+EYY NI
Sbjct: 1   DGSRKKKKTLKGFITSLILLEQQEKSDQEEQNHASNEEKILFEANHKKRIKTMVEYYGNI 60

Query: 110 QDYYAEVQETERVKRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSGQHRRLWV 169
           QD + E+QETER KRKKSR++A + A   A     +++  K  K G      GQ RRLWV
Sbjct: 61  QDDHVEIQETERNKRKKSRAVAGAAAVSAASNGVAAMKGIKDAKHGG--GAGGQQRRLWV 118

Query: 170 KDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRV 229
           KDR K WWD+CNR DYPEEEFKK FRM + TFD ICEELNSVIAKEDTTLRNAIPVRQRV
Sbjct: 119 KDRDKEWWDDCNRSDYPEEEFKKAFRMSKSTFDSICEELNSVIAKEDTTLRNAIPVRQRV 178

Query: 230 AVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKD 289
           AVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC+AIR+VLMPKYLQWPD+D LRK K+
Sbjct: 179 AVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCSAIRNVLMPKYLQWPDEDNLRKTKN 238

Query: 290 EFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAF 349
           EFE ISGIPNVVGSMYTTH+ IIAPKISVAAYFNKRHTERNQKTSYSITVQGVV+P G F
Sbjct: 239 EFESISGIPNVVGSMYTTHISIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDPKGVF 298

Query: 350 TDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWT 409
           TDVCIGWPGSMPDDQVLEKSAL+QRA+GGLLK VW+VG SGYPLMDWVLVPYTQQ+LTWT
Sbjct: 299 TDVCIGWPGSMPDDQVLEKSALFQRANGGLLKDVWLVGTSGYPLMDWVLVPYTQQNLTWT 358

Query: 410 QHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEE 469
           QHAFNEKIGEIQ V+KDAFARLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICEM NEE
Sbjct: 359 QHAFNEKIGEIQSVAKDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICEMQNEE 418

Query: 470 LDPELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           +DPEL  +LVDDEMVPEVALRS SSMK RD+IAHNLLHH  AGT+FL
Sbjct: 419 MDPELRMELVDDEMVPEVALRSASSMKARDAIAHNLLHHCHAGTSFL 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429570|ref|XP_002280033.1| PREDICTED: uncharacterized protein LOC100262760 [Vitis vinifera] gi|296081670|emb|CBI20675.3| unnamed protein product [Vitis vinifera]

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/488 (74%), Positives = 413/488 (84%), Gaps = 12/488 (2%)

Query: 35  DSSGNESPRPSSSSEEG-----GGGKKKDLNGIITSLLLLEEQEKGDQDAQKKASAEEKS 89
           DS+ N   R      EG       GKK+DL  IITSLLLLEEQ+K DQ+   +   EEK 
Sbjct: 3   DSTSNRKKRRRKDEGEGELGVVKEGKKRDLKEIITSLLLLEEQQKRDQEEFDRTLEEEKM 62

Query: 90  FFEANHRNKKKTMLEYYSNIQDYYAEVQETERVKRKKSRSLATSVAAITAIAADDSLQ-A 148
            FE NH+ K + M++YYSN+QDYY E+ + ++ +RK+  S + + AA    A   SL+ +
Sbjct: 63  VFEENHKKKTRAMMDYYSNLQDYYNELDDMDQARRKRCNSASATTAAAAGAAGAASLEFS 122

Query: 149 EKQVKQGTGGAGSGQHRRLWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEEL 208
           +  VK G+G       RRLWVKDRSKAWWDECN+P++PEEEF+K FRM R TFDMIC+EL
Sbjct: 123 DSSVKPGSGA------RRLWVKDRSKAWWDECNKPEFPEEEFRKAFRMSRATFDMICDEL 176

Query: 209 NSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR 268
           NSV+AKEDT LR AIPVRQRVAVCIWRLATGEPLRLVSK+FGLGISTCHKLVLEVC+AIR
Sbjct: 177 NSVVAKEDTMLRAAIPVRQRVAVCIWRLATGEPLRLVSKKFGLGISTCHKLVLEVCSAIR 236

Query: 269 SVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTE 328
           +VLMPKYLQWPD++ LR++KDEFE ISGIPNVVGSMYTTH+PIIAPKISVAAYFN+RHTE
Sbjct: 237 TVLMPKYLQWPDEETLRRMKDEFESISGIPNVVGSMYTTHIPIIAPKISVAAYFNRRHTE 296

Query: 329 RNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGG 388
           RNQKTSYSITVQGVV+P G FTDVCIGWPGSMPDDQVLEKSALYQRA+GGLLKGVWIVGG
Sbjct: 297 RNQKTSYSITVQGVVDPKGVFTDVCIGWPGSMPDDQVLEKSALYQRANGGLLKGVWIVGG 356

Query: 389 SGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQD 448
           SGYPLMDWV+VPYTQQ+LTWTQHAFNEKIGEIQRVS++AFARLK RWCCLQKRTEVKLQD
Sbjct: 357 SGYPLMDWVMVPYTQQNLTWTQHAFNEKIGEIQRVSREAFARLKARWCCLQKRTEVKLQD 416

Query: 449 LPVVLGACCVLHNICEMMNEELDPELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHH 508
           LPVVLGACCVLHNICE+ NEE+DPEL  +L+DDEM+PE+ LRS +SMK RD+IAHNLLHH
Sbjct: 417 LPVVLGACCVLHNICELQNEEMDPELRINLIDDEMIPEIPLRSTTSMKARDAIAHNLLHH 476

Query: 509 GLAGTAFL 516
           GLAGTAFL
Sbjct: 477 GLAGTAFL 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550093|ref|XP_002516097.1| conserved hypothetical protein [Ricinus communis] gi|223544583|gb|EEF46099.1| conserved hypothetical protein [Ricinus communis]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/514 (71%), Positives = 421/514 (81%), Gaps = 29/514 (5%)

Query: 9   RKRKRKDEQVGYEDDDDDDNNDDECYDSSGNESPRPSSSSEEGGGGKKKDLNGIITSLLL 68
           +KR+RK    GY  +  D ++ +   + S N +             K KDL+GIITSL+L
Sbjct: 8   KKRQRK----GYRQESVDKDDSNSFEEDSNNTT-----------SLKTKDLSGIITSLIL 52

Query: 69  LEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETERVKRKKSR 128
           +E+QEK DQ+ + +A +EEK   EANH+ K +T +EYYSN+QDYY+E++ET+RVKRKKSR
Sbjct: 53  IEDQEKCDQEEENRAFSEEKHLLEANHKKKTRTAVEYYSNLQDYYSEIEETDRVKRKKSR 112

Query: 129 SLATSVAAITAIAADDSLQAEKQVKQGTGGA------GSGQHRRLWVKDRSKAWWDECNR 182
           ++A + A   +              + TG A      G GQ RRLWVKDR K WWDECNR
Sbjct: 113 AIAGAAAISASSNG--------VANKATGDAKQGSGGGGGQQRRLWVKDRDKEWWDECNR 164

Query: 183 PDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPL 242
           PDYPEEEFKK FRM + TFD+ICEEL+S I KEDTTLRNAIPVRQRVAVCIWRLATGEPL
Sbjct: 165 PDYPEEEFKKAFRMSKATFDLICEELHSCIQKEDTTLRNAIPVRQRVAVCIWRLATGEPL 224

Query: 243 RLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVG 302
           RLVSKRFGLGISTCHKLVLEVC+AI++VLMPKYLQWPD+D+L+K+K+EFE ISGIPNVVG
Sbjct: 225 RLVSKRFGLGISTCHKLVLEVCSAIKNVLMPKYLQWPDEDSLKKVKNEFESISGIPNVVG 284

Query: 303 SMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPD 362
           SMYTTH+PIIAPKISVAAYFNKRHTERNQKTSYSITVQGVV+P G FTDVCIGWPGSMPD
Sbjct: 285 SMYTTHIPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDPKGVFTDVCIGWPGSMPD 344

Query: 363 DQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQR 422
           DQVLEKSALYQRA+GGLLK VWIVG SGYPLMDWVLVPYTQQHLTWTQHAFNEKIGE+Q 
Sbjct: 345 DQVLEKSALYQRANGGLLKDVWIVGSSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEVQT 404

Query: 423 VSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDE 482
           V+K+AF RLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICE+  EE+DP+L  +LVDDE
Sbjct: 405 VAKEAFTRLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICELRKEEIDPKLRVELVDDE 464

Query: 483 MVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           MVPEVALRS SSMK RD+IAHNLLHH  AGT FL
Sbjct: 465 MVPEVALRSASSMKARDAIAHNLLHHCHAGTGFL 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552466|ref|XP_003544588.1| PREDICTED: uncharacterized protein LOC100804219 [Glycine max]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/456 (76%), Positives = 396/456 (86%), Gaps = 5/456 (1%)

Query: 62  IITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETER 121
           I+TS+LLL+EQEK DQ    + S EEK   E NH+ K K ML+YYSN+ +YY+ V+E+ER
Sbjct: 83  ILTSILLLDEQEKLDQQQNNRVSEEEKFSLETNHKKKTKAMLQYYSNLDEYYSHVEESER 142

Query: 122 VKRKKSRSLATSVAAITAIAADDSLQAEKQ-VKQGTGGAGSGQHRRLWVKDRSKAWWDEC 180
           VKRKKSR +A +VA +      +      + VK G GG+     RRLWVKDRS AWWD C
Sbjct: 143 VKRKKSRGMARAVAVVACEREGEGGGGSAEGVKSGVGGS----QRRLWVKDRSGAWWDGC 198

Query: 181 NRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGE 240
           N+ D+PEEEF+K FRM R+TFDMIC+ELNS I KEDTTLRNAIPVRQRVAVC+WRLATG+
Sbjct: 199 NKEDFPEEEFRKAFRMGRETFDMICDELNSAIVKEDTTLRNAIPVRQRVAVCLWRLATGD 258

Query: 241 PLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNV 300
           PLR+VSKRFGLGISTCHKLVLEVCTAI+SVLMPKYL WPD+ +LR++K EFE +SGIPNV
Sbjct: 259 PLRIVSKRFGLGISTCHKLVLEVCTAIKSVLMPKYLNWPDEGSLRRVKSEFEGVSGIPNV 318

Query: 301 VGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSM 360
           VGSMYT+HVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVV+  G FTDVCIGWPGSM
Sbjct: 319 VGSMYTSHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDHRGVFTDVCIGWPGSM 378

Query: 361 PDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEI 420
           PDDQVLEKSAL+QRA+GGLLKGVWIVG SGYPLMDWVLVPY+QQ+LTWTQHAFNEKIGE+
Sbjct: 379 PDDQVLEKSALFQRANGGLLKGVWIVGSSGYPLMDWVLVPYSQQNLTWTQHAFNEKIGEV 438

Query: 421 QRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVD 480
           Q+V++DAFARLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICE+  E++DPEL  DLVD
Sbjct: 439 QKVARDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICELKGEKIDPELKVDLVD 498

Query: 481 DEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           DEMVPEVALRS+SSMK RD+IAHNLLHHGLAGT+FL
Sbjct: 499 DEMVPEVALRSMSSMKARDAIAHNLLHHGLAGTSFL 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563940|ref|XP_003550215.1| PREDICTED: putative nuclease HARBI1-like [Glycine max]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/458 (77%), Positives = 397/458 (86%), Gaps = 1/458 (0%)

Query: 59  LNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQE 118
           L GI+TS+LLL+EQEK +Q    K S EEK   E NH+ K K ML YYSN+ +YY+ V+E
Sbjct: 80  LKGILTSILLLDEQEKLEQQQNNKVSEEEKFSLETNHKKKTKAMLHYYSNLDEYYSHVEE 139

Query: 119 TERVKRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSGQHRRLWVKDRSKAWWD 178
           +ERVKRKKSR +A +VA   A    +        + G  GAG G  RRLWVKDRS AWWD
Sbjct: 140 SERVKRKKSRGMARAVAVAVAACEREGEGGGGSAEGGKSGAG-GSQRRLWVKDRSGAWWD 198

Query: 179 ECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLAT 238
           ECN+ D+PEE+FKK FRM R+TFDMICEELNS I KEDTTLRNAIPVRQRVAVC+WRLAT
Sbjct: 199 ECNKEDFPEEDFKKAFRMGRETFDMICEELNSAIVKEDTTLRNAIPVRQRVAVCLWRLAT 258

Query: 239 GEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIP 298
           G+PLR+VSKRFGLGISTCHKLVLEVCTAI+SVLMPKYL WPD+ ALR++K EFE +SGIP
Sbjct: 259 GDPLRIVSKRFGLGISTCHKLVLEVCTAIKSVLMPKYLNWPDEVALRRVKSEFEGVSGIP 318

Query: 299 NVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPG 358
           NVVGSMYT+HVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVV+  G FTDVCIGWPG
Sbjct: 319 NVVGSMYTSHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDHRGVFTDVCIGWPG 378

Query: 359 SMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIG 418
           SMPDDQVLEKSAL+QRA+GGLLKG WIVG SGYPLMDWVLVPY+QQ+LTWTQHAFNEKIG
Sbjct: 379 SMPDDQVLEKSALFQRANGGLLKGDWIVGSSGYPLMDWVLVPYSQQNLTWTQHAFNEKIG 438

Query: 419 EIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDL 478
           E+Q+V++DAFARLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICE+  E++DPEL  DL
Sbjct: 439 EVQKVARDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICELKGEKIDPELKVDL 498

Query: 479 VDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           +DDEMVPEVALRS+SSMKTRD+IAHNLLHHGLAGT+FL
Sbjct: 499 MDDEMVPEVALRSMSSMKTRDAIAHNLLHHGLAGTSFL 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447145|ref|XP_004141329.1| PREDICTED: putative nuclease HARBI1-like [Cucumis sativus]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/459 (77%), Positives = 399/459 (86%), Gaps = 5/459 (1%)

Query: 63  ITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQETERV 122
           +TSLLLL+EQ+K +QD Q + S E K   E NHR K K M+++YS +QDYY+EV+E++R+
Sbjct: 38  VTSLLLLDEQDKCEQDEQDRISVEAKISMEVNHRKKTKAMVDFYSEVQDYYSEVEESDRM 97

Query: 123 KRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTGGAGSG-----QHRRLWVKDRSKAWW 177
           KRKKSR  A SVA          +++EK  K+G  G G        HRRLWVKDRSKAWW
Sbjct: 98  KRKKSRLAANSVAVAAVSDGLQKIESEKSNKRGGDGGGGSGGGGGHHRRLWVKDRSKAWW 157

Query: 178 DECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLA 237
           DECN PDYP+EEFKK FRM R TFDMICEELNS IAKEDTTLR AIPV+QRVAVC+WRLA
Sbjct: 158 DECNSPDYPDEEFKKQFRMGRATFDMICEELNSAIAKEDTTLRTAIPVQQRVAVCLWRLA 217

Query: 238 TGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGI 297
           TG+PLR+VSK+FGLGISTCHKLVLEVCTAIR+VLMPK+LQWP+++ LR+IK+E+E ISGI
Sbjct: 218 TGDPLRVVSKKFGLGISTCHKLVLEVCTAIRTVLMPKHLQWPEEETLRRIKEEYESISGI 277

Query: 298 PNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWP 357
           PNVVGSMYTTH+PIIAPKISVAAYFNKRHTERNQKTSYSITVQGVV+P G FTDVCIGWP
Sbjct: 278 PNVVGSMYTTHIPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDPRGVFTDVCIGWP 337

Query: 358 GSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKI 417
           GSMPDDQVLEKSAL+QRA+GGLLKGVWIVGGS YPLMDWVLVPYTQQHLTWTQHAFNEKI
Sbjct: 338 GSMPDDQVLEKSALFQRANGGLLKGVWIVGGSSYPLMDWVLVPYTQQHLTWTQHAFNEKI 397

Query: 418 GEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFD 477
           GEIQ+V+KDAFARLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICE+ N+E+D EL  +
Sbjct: 398 GEIQKVAKDAFARLKGRWRCLQKRTEVKLQDLPVVLGACCVLHNICELGNQEMDTELLTE 457

Query: 478 LVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           L DDEM PE+ALRSV SMK RD+IAHNLLHHGLAGT+FL
Sbjct: 458 LQDDEMAPEMALRSVPSMKARDAIAHNLLHHGLAGTSFL 496

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437265|ref|XP_003588908.1| hypothetical protein MTR_1g015070 [Medicago truncatula] gi|355477956|gb|AES59159.1| hypothetical protein MTR_1g015070 [Medicago truncatula]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/463 (74%), Positives = 399/463 (86%), Gaps = 6/463 (1%)

Query: 59  LNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEVQE 118
           L GI+TS+LLL+EQEK + +  KK S +EK   EANH+ K K M++YYSN++D Y++V+E
Sbjct: 49  LKGILTSILLLDEQEKQEIEDSKKVSEDEKFSLEANHKKKTKAMVDYYSNLEDGYSQVEE 108

Query: 119 TERVKRKKSRSLATSVAAITAIAADDSLQAE----KQVKQGTGGAGSGQHRRLWVKDRSK 174
           +E+V+R+K+R+++ SVA     + +    +E      V  G    G G  RRLWVKDRS 
Sbjct: 109 SEKVRRRKTRNMSNSVAIAATCSENFEANSEGVNVNDVNSGKSNGG-GSQRRLWVKDRSG 167

Query: 175 AWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIW 234
           AWWDECN+ D+PE+EFKK FRM + TFD+ICEELNS I KEDTTLR AIPVRQRVAVC+W
Sbjct: 168 AWWDECNKEDFPEDEFKKAFRMGKSTFDLICEELNSAIVKEDTTLRTAIPVRQRVAVCLW 227

Query: 235 RLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVI 294
           RLATG+PLR+VSKRFGLGISTCHKLVLEVCTAI++VLMPKYLQWP++ +LRKIK+EFE +
Sbjct: 228 RLATGDPLRIVSKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWPNETSLRKIKNEFEGM 287

Query: 295 SGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCI 354
           SGIPNVVGSMYT+HVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVV+ NG FTDVCI
Sbjct: 288 SGIPNVVGSMYTSHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDTNGVFTDVCI 347

Query: 355 GWPGSMPDDQVLEKSALYQRA-SGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAF 413
           GWPGSMPDDQVLEKSAL+QRA +GGLLKGVWIVG SGYPLMDWVLVPYTQQ+LTWTQH F
Sbjct: 348 GWPGSMPDDQVLEKSALFQRANNGGLLKGVWIVGSSGYPLMDWVLVPYTQQNLTWTQHGF 407

Query: 414 NEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPE 473
           NEKIGEIQ+V+KDAFARLKGRW CLQKRTEVKLQDLPVVLGACCVLHNICEM  E++DPE
Sbjct: 408 NEKIGEIQKVAKDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICEMKGEKMDPE 467

Query: 474 LAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           L  D+VDDEMVPEV+LRSV+S+K RD+IAHNLLHHGLA   F+
Sbjct: 468 LMVDIVDDEMVPEVSLRSVNSLKARDAIAHNLLHHGLADCLFI 510

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239835|ref|NP_196762.1| uncharacterized protein [Arabidopsis thaliana] gi|7573368|emb|CAB87674.1| putative protein [Arabidopsis thaliana] gi|16604352|gb|AAL24182.1| AT5g12010/F14F18_180 [Arabidopsis thaliana] gi|25141199|gb|AAN73294.1| At5g12010/F14F18_180 [Arabidopsis thaliana] gi|332004367|gb|AED91750.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/464 (70%), Positives = 392/464 (84%), Gaps = 6/464 (1%)

Query: 57  KDLNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEV 116
           K+L G  TSLLL+EE EK DQ+A+  AS  E S F++N+R + +TM +YYS++ DYYA+ 
Sbjct: 41  KNLKGFFTSLLLMEEHEKQDQEARNAASRREMSDFQSNYRKRARTMSDYYSDLNDYYADA 100

Query: 117 QETERVKRKKSRSLATSVAAITAIAADDSLQAEKQVKQGTG---GAGSGQHRRLWVKDRS 173
           +E+  +  KKSR      +   A A++  ++AE     G+G   G GSGQ RRLWVKDRS
Sbjct: 101 EESGDINLKKSRVSRAVASVAVAAASE--IEAESSEITGSGSVRGTGSGQQRRLWVKDRS 158

Query: 174 KAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCI 233
           +AWW+EC+R DYPEE+FKK FRM + TF++IC+ELNS +AKEDT LRNAIPVRQRVAVCI
Sbjct: 159 RAWWEECSRLDYPEEDFKKAFRMSKSTFELICDELNSAVAKEDTALRNAIPVRQRVAVCI 218

Query: 234 WRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEV 293
           WRLATGEPLRLVSK+FGLGISTCHKLVLEVC AI+ VLMPKYLQWPDD++LR I++ FE 
Sbjct: 219 WRLATGEPLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWPDDESLRNIRERFES 278

Query: 294 ISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVC 353
           +SGIPNVVGSMYTTH+PIIAPKISVA+YFNKRHTERNQKTSYSIT+Q VVNP G FTD+C
Sbjct: 279 VSGIPNVVGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVVNPKGVFTDLC 338

Query: 354 IGWPGSMPDDQVLEKSALYQRA-SGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHA 412
           IGWPGSMPDD+VLEKS LYQRA +GGLLKG+W+ GG G+PL+DWVLVPYTQQ+LTWTQHA
Sbjct: 339 IGWPGSMPDDKVLEKSLLYQRANNGGLLKGMWVAGGPGHPLLDWVLVPYTQQNLTWTQHA 398

Query: 413 FNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDP 472
           FNEK+ E+Q V+K+AF RLKGRW CLQKRTEVKLQDLP VLGACCVLHNICEM  E+++P
Sbjct: 399 FNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNICEMREEKMEP 458

Query: 473 ELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
           EL  +++DDE++PE  LRSV++MK RD+I+HNLLHHGLAGT+FL
Sbjct: 459 ELMVEVIDDEVLPENVLRSVNAMKARDTISHNLLHHGLAGTSFL 502

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
TAIR|locus:2143104	502	AT5G12010 [Arabidopsis thalian	0.887	0.912	0.698	3.7e-183
TAIR|locus:2123874	540	AT4G29780 "AT4G29780" [Arabido	0.893	0.853	0.597	6.9e-150
ZFIN|ZDB-GENE-050327-32	415	zgc:113227 "zgc:113227" [Danio	0.587	0.730	0.339	3.5e-52
TAIR|locus:2099901	406	AT3G55350 [Arabidopsis thalian	0.569	0.724	0.313	2.1e-36
TAIR|locus:2077259	396	AT3G63270 [Arabidopsis thalian	0.542	0.707	0.304	4.6e-34
ZFIN|ZDB-GENE-081022-77	394	zgc:194221 "zgc:194221" [Danio	0.589	0.771	0.277	1.5e-22
UNIPROTKB|E1BQ99	348	HARBI1 "Uncharacterized protei	0.527	0.781	0.263	1.1e-21
UNIPROTKB|Q17QR8	349	HARBI1 "Putative nuclease HARB	0.527	0.779	0.263	3.5e-18
UNIPROTKB|E2RCW9	349	HARBI1 "Uncharacterized protei	0.527	0.779	0.260	3.5e-18
UNIPROTKB|F1SIA2	349	HARBI1 "Uncharacterized protei	0.527	0.779	0.260	6.3e-18

TAIR|locus:2143104 AT5G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 1777 (630.6 bits), Expect = 3.7e-183, P = 3.7e-183
 Identities = 324/464 (69%), Positives = 386/464 (83%)

Query:    57 KDLNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAEV 116
             K+L G  TSLLL+EE EK DQ+A+  AS  E S F++N+R + +TM +YYS++ DYYA+ 
Sbjct:    41 KNLKGFFTSLLLMEEHEKQDQEARNAASRREMSDFQSNYRKRARTMSDYYSDLNDYYADA 100

Query:   117 QETERVKRKKSRSXXXXXXXXXXXXXXXXXQAEKQVKQGTG---GAGSGQHRRLWVKDRS 173
             +E+  +  KKSR                  +AE     G+G   G GSGQ RRLWVKDRS
Sbjct:   101 EESGDINLKKSR--VSRAVASVAVAAASEIEAESSEITGSGSVRGTGSGQQRRLWVKDRS 158

Query:   174 KAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCI 233
             +AWW+EC+R DYPEE+FKK FRM + TF++IC+ELNS +AKEDT LRNAIPVRQRVAVCI
Sbjct:   159 RAWWEECSRLDYPEEDFKKAFRMSKSTFELICDELNSAVAKEDTALRNAIPVRQRVAVCI 218

Query:   234 WRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEV 293
             WRLATGEPLRLVSK+FGLGISTCHKLVLEVC AI+ VLMPKYLQWPDD++LR I++ FE 
Sbjct:   219 WRLATGEPLRLVSKKFGLGISTCHKLVLEVCKAIKDVLMPKYLQWPDDESLRNIRERFES 278

Query:   294 ISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVC 353
             +SGIPNVVGSMYTTH+PIIAPKISVA+YFNKRHTERNQKTSYSIT+Q VVNP G FTD+C
Sbjct:   279 VSGIPNVVGSMYTTHIPIIAPKISVASYFNKRHTERNQKTSYSITIQAVVNPKGVFTDLC 338

Query:   354 IGWPGSMPDDQVLEKSALYQRAS-GGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHA 412
             IGWPGSMPDD+VLEKS LYQRA+ GGLLKG+W+ GG G+PL+DWVLVPYTQQ+LTWTQHA
Sbjct:   339 IGWPGSMPDDKVLEKSLLYQRANNGGLLKGMWVAGGPGHPLLDWVLVPYTQQNLTWTQHA 398

Query:   413 FNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDP 472
             FNEK+ E+Q V+K+AF RLKGRW CLQKRTEVKLQDLP VLGACCVLHNICEM  E+++P
Sbjct:   399 FNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNICEMREEKMEP 458

Query:   473 ELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
             EL  +++DDE++PE  LRSV++MK RD+I+HNLLHHGLAGT+FL
Sbjct:   459 ELMVEVIDDEVLPENVLRSVNAMKARDTISHNLLHHGLAGTSFL 502

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2123874 AT4G29780 "AT4G29780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
 Identities = 278/465 (59%), Positives = 341/465 (73%)

Query:    56 KKDLNGIITSLLLLEEQEKGDQDAQKKASAEEKSFFEANHRNKKKTMLEYYSNIQDYYAE 115
             K     I+ +LLLL+E+ K  Q+       +EKS  EANH+ K KTM  YY+ +QD+Y+ 
Sbjct:    76 KAAFGDILATLLLLDEEAKQQQEQWDFEFIKEKSLLEANHKKKVKTMDGYYNQMQDHYSA 135

Query:   116 VQETERVKRKKSRSXXXXXXXXXXXXXXXXXQAEKQVKQG--TGGAGSG-QHRRLWVKDR 172
               ET+  + K++R                       V       G+GSG  HRRLWVK+R
Sbjct:   136 AGETDGSRSKRARKTAVAAVVSAVASGADTTGLAAPVPTADIASGSGSGPSHRRLWVKER 195

Query:   173 SKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVC 232
             +  WWD  +RPD+PE+EF++ FRM + TF++ICEEL++ + K++T LR+AIP  +RV VC
Sbjct:   196 TTDWWDRVSRPDFPEDEFRREFRMSKSTFNLICEELDTTVTKKNTMLRDAIPAPKRVGVC 255

Query:   233 IWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFE 292
             +WRLATG PLR VS+RFGLGISTCHKLV+EVC AI  VLMPKYL WP D  +   K +FE
Sbjct:   256 VWRLATGAPLRHVSERFGLGISTCHKLVIEVCRAIYDVLMPKYLLWPSDSEINSTKAKFE 315

Query:   293 VISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDV 352
              +  IPNVVGS+YTTH+PIIAPK+ VAAYFNKRHTERNQKTSYSITVQGVVN +G FTDV
Sbjct:   316 SVHKIPNVVGSIYTTHIPIIAPKVHVAAYFNKRHTERNQKTSYSITVQGVVNADGIFTDV 375

Query:   353 CIGWPGSMPDDQVLEKSALY-QRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQH 411
             CIG PGS+ DDQ+LEKS+L  QRA+ G+L+  WIVG SG+PL D++LVPYT+Q+LTWTQH
Sbjct:   376 CIGNPGSLTDDQILEKSSLSRQRAARGMLRDSWIVGNSGFPLTDYLLVPYTRQNLTWTQH 435

Query:   412 AFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELD 471
             AFNE IGEIQ ++  AF RLKGRW CLQKRTEVKLQDLP VLGACCVLHNICEM  EE+ 
Sbjct:   436 AFNESIGEIQGIATAAFERLKGRWACLQKRTEVKLQDLPYVLGACCVLHNICEMRKEEML 495

Query:   472 PELAFDLVDDEMVPEVALRSVSSMKTRDSIAHNLLHHGLAGTAFL 516
             PEL F++ DD  VPE  +RS S++ TRD I+HNLLH GLAGT  L
Sbjct:   496 PELKFEVFDDVAVPENNIRSASAVNTRDHISHNLLHRGLAGTRTL 540

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

ZFIN|ZDB-GENE-050327-32 zgc:113227 "zgc:113227" [Danio rerio (taxid:7955)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 110/324 (33%), Positives = 186/324 (57%)

Query:   167 LWVKDRSKAWWDECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVR 226
             +W   R   WWD    P++  EEF + FR+ R++F+ IC  L  ++ ++DT  R ++PV+
Sbjct:    59 VWSHPREHRWWDVIV-PEFTPEEFIQNFRVSRESFEYICRRLRHMLERKDTNFRLSVPVK 117

Query:   227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRK 286
             +RVA+ + +LATG   R VS+ FG+G+ST    V + C+A+  +L+P ++++P  + L++
Sbjct:   118 KRVAIALCKLATGSEYRYVSQLFGVGVSTVFNCVQDFCSAVIKILVPVHMKFPSPEKLKE 177

Query:   287 IKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPN 346
             + D FE    +P  +GS+   H+PIIAP+ +   Y N+       K  +S+ +Q VV+ N
Sbjct:   178 MADVFENCWNVPQCIGSIDAHHIPIIAPEKNPRGYLNR-------KGWHSVVLQAVVDGN 230

Query:   347 GAFTDVCIGWPGSMPDDQVLEKSALYQRAS------------GGLLKGVWIVGGSGYPLM 394
             G F D+C+G+ G++ D +VL +S L+   S             G   G +++G S YPL 
Sbjct:   231 GLFWDLCVGFSGNLSDARVLRQSYLWSLLSERDLLNHNKVDISGCDVGYYLIGDSAYPLQ 290

Query:   395 DWVLVPYTQ-QHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVL 453
             +W++ P+     LT  Q +FN ++   + VS  +F +LK RW CL +R + K++ +  + 
Sbjct:   291 NWLMKPFPDIGGLTPQQESFNSRLSSARSVSDLSFKKLKARWQCLFRRNDCKVELVKKMA 350

Query:   454 GACCVLHNICEMMNEELDPELAFD 477
               CCVLHNICE    +   + + D
Sbjct:   351 LTCCVLHNICEEKGTQFSEDHSTD 374

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2099901 AT3G55350 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 102/325 (31%), Positives = 170/325 (52%)

Query:   172 RSKAWWDECNRPDY----PEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLR----NAI 223
             +S  WWD  +R  Y      + F+  F++ R+TFD IC  + +    +         N +
Sbjct:    50 QSLDWWDGFSRRIYGGSTDPKTFESVFKISRKTFDYICSLVKADFTAKPANFSDSNGNPL 109

Query:   224 PVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA 283
              +  RVAV + RL +GE L ++ + FG+  ST  ++      ++    +  +L WP    
Sbjct:   110 SLNDRVAVALRRLGSGESLSVIGETFGMNQSTVSQITWRFVESMEERAI-HHLSWPSK-- 166

Query:   284 LRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVV 343
             L +IK +FE ISG+PN  G++  TH+ +  P +  +   NK   +  +K ++S+T+Q VV
Sbjct:   167 LDEIKSKFEKISGLPNCCGAIDITHIVMNLPAVEPS---NKVWLD-GEK-NFSMTLQAVV 221

Query:   344 NPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGL-LKGV------------WIVGGSG 390
             +P+  F DV  GWPGS+ DD VL+ S  Y+    G  L G             +IVG SG
Sbjct:   222 DPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSG 281

Query:   391 YPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQD-L 449
             +PL+ W+L PY  +  +  Q  FN++  E  + ++ A ++LK RW  +     +  ++ L
Sbjct:   282 FPLLPWLLTPYQGKPTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRL 341

Query:   450 PVVLGACCVLHNIC-EMMNEELDPE 473
             P ++  CC+LHNI  +M ++ LD +
Sbjct:   342 PRIIFVCCLLHNIIIDMEDQTLDDQ 366

GO:0005634 "nucleus" evidence=ISM

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

TAIR|locus:2077259 AT3G63270 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 94/309 (30%), Positives = 160/309 (51%)

Query:   176 WWDECNRPDYPEEE---FKKWFRMRRQTFDMICEELNS-VIAKEDTTLRNA----IPVRQ 227
             +W   + P  P +E   FK +FR  + TF  IC  +   +I++  + L N     + V +
Sbjct:    48 FWLRNSSPSVPSDEDYAFKHFFRASKTTFSYICSLVREDLISRPPSGLINIEGRLLSVEK 107

Query:   228 RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKI 287
             +VA+ + RLA+G+    V   FG+G ST  ++      A+       +L+WPD D + +I
Sbjct:   108 QVAIALRRLASGDSQVSVGAAFGVGQSTVSQVTWRFIEALEE-RAKHHLRWPDSDRIEEI 166

Query:   288 KDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNG 347
             K +FE + G+PN  G++ TTH+ +  P +  +  +       +Q+ +YS+ +QGV +   
Sbjct:   167 KSKFEEMYGLPNCCGAIDTTHIIMTLPAVQASDDWC------DQEKNYSMFLQGVFDHEM 220

Query:   348 AFTDVCIGWPGSMPDDQVLEKSALY------QRASGG---LLKGV----WIVGGSGYPLM 394
              F ++  GWPG M   ++L+ S  +      Q   G    L +G     ++VGG  YPL+
Sbjct:   221 RFLNMVTGWPGGMTVSKLLKFSGFFKLCENAQILDGNPKTLSQGAQIREYVVGGISYPLL 280

Query:   395 DWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQK-RTEVKLQDLPVVL 453
              W++ P+   H + +  AFNE+  +++ V+  AF +LKG W  L K       + LP ++
Sbjct:   281 PWLITPHDSDHPSDSMVAFNERHEKVRSVAATAFQQLKGSWRILSKVMWRPDRRKLPSII 340

Query:   454 GACCVLHNI 462
               CC+LHNI
Sbjct:   341 LVCCLLHNI 349

GO:0005634 "nucleus" evidence=ISM

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

ZFIN|ZDB-GENE-081022-77 zgc:194221 "zgc:194221" [Danio rerio (taxid:7955)]

 Score = 277 (102.6 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 91/328 (27%), Positives = 150/328 (45%)

Query:   190 FKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRF 249
             F+++FR+ R+ FD +  ++   IA++DT  R +I   +R+A+C+  LATG+  R ++  +
Sbjct:    53 FQRYFRLDREQFDSLLSKVGPQIARQDTNYRQSIEPAERLAICLRFLATGDSYRTIAFSY 112

Query:   250 GLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHV 309
              +G+ST   +V  V  AI   L  + +  P  +  R I  +F      PN +GS+   HV
Sbjct:   113 RVGVSTVAGIVAAVTRAIWDTLAQEVMPVPTTEDWRNISTDFLHRWNFPNCLGSIDGKHV 172

Query:   310 PIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKS 369
              I AP  S + ++N + T       YS+ +  VV+    F  V +G  G M D  VL  S
Sbjct:   173 VIKAPDNSGSLFYNYKGT-------YSVVLLAVVDSQYRFRVVDVGSYGRMSDGGVLANS 225

Query:   370 ----ALYQRASG----GLLKGVW--------IVGGSGYPLMDWVLVPYTQQHLTWTQHAF 413
                 AL   A G     LL G           V    +PL   ++ P+   +L+  Q  F
Sbjct:   226 IFGQALRDGALGLPQDALLSGAEHFGPQPHVFVADEAFPLRRDLMRPFPGHNLSGRQRIF 285

Query:   414 NEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPE 473
             N ++   + + ++ F  L  +W   +   E+   ++   + A CVLHN          P 
Sbjct:   286 NYRLSRARLIVENTFGILTAQWRMYRGAIEISPANVDACVKATCVLHNFLRSTTSTRIPL 345

Query:   474 LAFDLVDDEMVPEVALRSVSSMKTRDSI 501
              +    D   + EV  R  S+  TR++I
Sbjct:   346 PSAADGDAAGLQEVT-RVGSNNATREAI 372

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BQ99 HARBI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 77/292 (26%), Positives = 135/292 (46%)

Query:   178 DECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLA 237
             D     D  +E     +   RQ    + + L + +++  T    AI    +V   +    
Sbjct:    23 DRFKLEDVTDEYLVSTYGFPRQFICYLVDLLGASLSRP-TQRSRAISPETQVLAALGFYT 81

Query:   238 TGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LRKIKDEFEVISG 296
             +G     +    G+  ++  + V  V  A+     P+++ +P+D+A ++ +KD+F  ++G
Sbjct:    82 SGSFQTRMGDAIGISQASMSRCVANVTEALVE-RAPQFIHFPEDEAAVQSLKDDFYALAG 140

Query:   297 IPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGW 356
             +P V+G +  THV I AP     +Y N+       K  +S+    V +  GA       W
Sbjct:   141 MPGVLGVVDCTHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDARGALLSAETHW 193

Query:   357 PGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWT--QHAFN 414
             PGSMPD  VL+++AL  +    L K  W++G S + L  W++ P    H+  T  ++ +N
Sbjct:   194 PGSMPDCNVLQQAALTSQFENELYKDGWLLGDSSFFLRTWLMTPL---HIPETPAEYRYN 250

Query:   415 EKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVLHNI 462
                     V +  F  ++ R+ CL   ++  LQ  P     ++ ACCVLHNI
Sbjct:   251 MAHSATHNVIERTFRTIRSRFRCLDG-SKGTLQYSPEKSSHIILACCVLHNI 301

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

UNIPROTKB|Q17QR8 HARBI1 "Putative nuclease HARBI1" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 3.5e-18, P = 3.5e-18
 Identities = 77/292 (26%), Positives = 132/292 (45%)

Query:   178 DECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLA 237
             D     D  +E     +   RQ    + E L + +++  T    AI    ++   +    
Sbjct:    23 DRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGASLSRP-TQRSRAISPETQILAALGFYT 81

Query:   238 TGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LRKIKDEFEVISG 296
             +G     +    G+  ++  + V  V  A+      +++ +P D+A ++ +KDEF  ++G
Sbjct:    82 SGSFQTRMGDAIGISQASMSRCVANVTEALVE-RASQFIHFPADEASVQALKDEFYGLAG 140

Query:   297 IPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGW 356
             IP V+G +   HV I AP     +Y N+       K  +S+    V +  GA   V   W
Sbjct:   141 IPGVIGVVDCMHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDIRGALMTVETSW 193

Query:   357 PGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWT--QHAFN 414
             PGS+ D  VL++S+L  +   G+ K  W++G S + L  W++ P    H+  T  ++ +N
Sbjct:   194 PGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRTWLMTPL---HIPETPAEYRYN 250

Query:   415 EKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVLHNI 462
                     V +  F  L  R+ CL   ++  LQ  P     ++ ACCVLHNI
Sbjct:   251 MAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEKSSHIILACCVLHNI 301

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

UNIPROTKB|E2RCW9 HARBI1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 3.5e-18, P = 3.5e-18
 Identities = 76/292 (26%), Positives = 132/292 (45%)

Query:   178 DECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLA 237
             D     D  +E     +   RQ    + E L + +++  T    AI    ++   +    
Sbjct:    23 DRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGASLSRP-TQRSRAISPETQILAALGFYT 81

Query:   238 TGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LRKIKDEFEVISG 296
             +G     +    G+  ++  + V  V  A+      +++++P D+A ++ +KDEF  ++G
Sbjct:    82 SGSFQTRMGDAIGISQASMSRCVANVTEALVE-RATQFIRFPADEASMQALKDEFYGLAG 140

Query:   297 IPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGW 356
             +P V+G +   HV I AP     +Y N+       K  +S+    V +  GA   V   W
Sbjct:   141 MPGVIGVVDCIHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDIRGALMTVETNW 193

Query:   357 PGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWT--QHAFN 414
             PGS+ D  VL++S+L      G+ K  W++G S + L  W++ P    H+  T  ++ +N
Sbjct:   194 PGSLQDYAVLQQSSLNSHFEAGMHKDSWLLGDSSFFLRTWLMTPL---HIPETPAEYRYN 250

Query:   415 EKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVLHNI 462
                     V +  F  L  R+ CL   ++  LQ  P     ++ ACCVLHNI
Sbjct:   251 MAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEKSSHIILACCVLHNI 301

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1SIA2 HARBI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 237 (88.5 bits), Expect = 6.3e-18, P = 6.3e-18
 Identities = 76/292 (26%), Positives = 132/292 (45%)

Query:   178 DECNRPDYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLA 237
             D     D  +E     +   RQ    + E L S +++  T    AI    ++   +    
Sbjct:    23 DRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGSSLSRP-TQRSRAISPETQILAALGFYT 81

Query:   238 TGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDA-LRKIKDEFEVISG 296
             +G     +    G+  ++  + V  V  A+      +++++P D+A ++ +KDEF  ++G
Sbjct:    82 SGSFQTRMGDAIGISQASMSRCVTNVTEALVE-RASQFIRFPADEASVQALKDEFYGLAG 140

Query:   297 IPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGW 356
             +P V+G +   HV I AP     +Y N+       K  +S+    V +  G    V   W
Sbjct:   141 MPGVIGVVDCIHVAIKAPNAEDLSYVNR-------KGLHSLNCLMVCDIRGTLMTVETNW 193

Query:   357 PGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWT--QHAFN 414
             PGS+ D  VL++S+L  +   G+ K  W++G S + L  W++ P    H+  T  ++ +N
Sbjct:   194 PGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRSWLMTPL---HIPETPAEYRYN 250

Query:   415 EKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPV----VLGACCVLHNI 462
                     V +  F  L  R+ CL   ++  LQ  P     ++ ACCVLHNI
Sbjct:   251 MAHSATHSVIEKTFRTLCSRFRCLDG-SKGALQYSPEKCSHIILACCVLHNI 301

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	516
pfam13359	155	pfam13359, DDE_4, DDE superfamily endonuclease	3e-41

>gnl|CDD|222071 pfam13359, DDE_4, DDE superfamily endonuclease

 Score =  145 bits (367), Expect = 3e-41
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 19/166 (11%)

Query: 304 MYTTHVPIIAPK---ISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSM 360
           +  T +PI  PK        Y   +          ++ V  VV+P+G    V +GWPGS+
Sbjct: 1   IDGTEIPIERPKSLEEQAQTYSGYKKH-------NTLKVLIVVDPDGRIIFVSVGWPGSV 53

Query: 361 PDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVP----YTQQHLTWTQHAFNEK 416
            D ++LE S L ++    L  G +++   G+PL D +L P         LT  +  FN +
Sbjct: 54  SDKRILENSGLLEK----LPPGDYVLADRGFPLSDSLLAPPAKKPGGAQLTEEEVEFNRR 109

Query: 417 IGEIQRVSKDAFARLKGRWCCLQKRTEVK-LQDLPVVLGACCVLHN 461
           I   +   +    RLKGR+  L+ R  +  L  L  ++  CC LHN
Sbjct: 110 IASARIHVERVIGRLKGRFRILRGRLRISKLTTLDKIVLVCCALHN 155

This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	516
KOG4585	326	consensus Predicted transposase [Replication, reco	100.0
PF13359	158	DDE_Tnp_4: DDE superfamily endonuclease	100.0
PF04827	205	Plant_tran: Plant transposon protein; InterPro: IP	99.97
PF13612	155	DDE_Tnp_1_3: Transposase DDE domain	98.84
PF13613	53	HTH_Tnp_4: Helix-turn-helix of DDE superfamily end	98.67
PF01609	213	DDE_Tnp_1: Transposase DDE domain; InterPro: IPR00	97.7
PF13586	88	DDE_Tnp_1_2: Transposase DDE domain	96.55
PF04218	53	CENP-B_N: CENP-B N-terminal DNA-binding domain; In	94.46
PF04545	50	Sigma70_r4: Sigma-70, region 4; InterPro: IPR00763	93.28
PF02796	45	HTH_7: Helix-turn-helix domain of resolvase; Inter	92.68
PF13936	44	HTH_38: Helix-turn-helix domain; PDB: 2W48_A.	92.05
PF13340	75	DUF4096: Putative transposase of IS4/5 family (DUF	90.16
PF12116	82	SpoIIID: Stage III sporulation protein D; InterPro	90.07
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	89.68
PF13518	52	HTH_28: Helix-turn-helix domain	89.52
PF02209	36	VHP: Villin headpiece domain; InterPro: IPR003128	88.9
PF13384	50	HTH_23: Homeodomain-like domain; PDB: 2X48_C.	88.05
smart00153	36	VHP Villin headpiece domain.	87.43
smart00351	125	PAX Paired Box domain.	86.72
cd00569	42	HTH_Hin_like Helix-turn-helix domain of Hin and re	86.34
PF05225	45	HTH_psq: helix-turn-helix, Psq domain; InterPro: I	85.79
PF13011	85	LZ_Tnp_IS481: leucine-zipper of insertion element	85.31
cd00131	128	PAX Paired Box domain	84.36
PRK04217	110	hypothetical protein; Provisional	83.4
PRK09413	121	IS2 repressor TnpA; Reviewed	83.29
smart00421	58	HTH_LUXR helix_turn_helix, Lux Regulon. lux regulo	83.0
COG3415	138	Transposase and inactivated derivatives [DNA repli	82.34
PRK09639	166	RNA polymerase sigma factor SigX; Provisional	82.09
cd06171	55	Sigma70_r4 Sigma70, region (SR) 4 refers to the mo	81.34
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	81.18
PRK00118	104	putative DNA-binding protein; Validated	80.46

>KOG4585 consensus Predicted transposase [Replication, recombination and repair]

Probab=100.00  E-value=8.6e-40  Score=335.19  Aligned_cols=297  Identities=36%  Similarity=0.606  Sum_probs=238.5

Q ss_pred             HcCCCHHHHHHHHHHhhccccccCC--CCCCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhh
Q 046732          193 WFRMRRQTFDMICEELNSVIAKEDT--TLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSV  270 (516)
Q Consensus       193 ~FRmsk~tF~~L~~~L~~~i~k~~t--~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~  270 (516)
                      .|++++.+|..|+............  .....+++..+++++|+.++++.+.+.++..||...+|+      ++......
T Consensus         7 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~fg~~~~~~------~~~~~~~~   80 (326)
T KOG4585|consen    7 EFRKSYTTFDKICSLVQSLNVVKNSGFMLSSLLPADTLVAVALWRLKTGESLRTVEKKFGLGQSTC------KFLEEKED   80 (326)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhcccchhhhccccHHhhhhhhhccccccchHHHHHHHcCCcchhh------hHHHhhhc
Confidence            7889999999999986653222221  122233388999999999999999999999999999998      33344445


Q ss_pred             cccccccCCChhHHHhhHHHHHhhhCCCccccCCCceeeEEeCCCcccccccccccccccCCcccceeecceecCCCCee
Q 046732          271 LMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFT  350 (516)
Q Consensus       271 L~~~~I~~P~~ee~~~i~~~F~~~~gfP~~vGaIDgThIpI~~P~~~~~~y~n~~~~~~n~K~~~Si~vq~V~D~~g~fi  350 (516)
                      +++.++.||....+..+.+.|+.   ||+|+|+||+|||++..|......|+|+         .++.++|+|||++++|+
T Consensus        81 ~~~~~~~~p~~~~~~~i~~~~~~---~~~~~g~~d~~hi~~~~~~~~~~~~~n~---------~~~~Nvlav~n~d~~f~  148 (326)
T KOG4585|consen   81 LAPHFLKWPSRRILYEIRERFES---LPNCVGAIDTTHIPIRVPPKSGSVYFNK---------EQSKNLLAVCNFDMRFI  148 (326)
T ss_pred             ccchhhcCchhhhhhhhcccccc---ccchhccccccccceecCcccccccccc---------ccchhhhheecCCceEE
Confidence            78999999998888888888876   9999999999999999999888888773         57888999999999999


Q ss_pred             ccccCCCCCCCChhHhhhHHHHhhhhcCcc-----------eeEEEEeccCCCCcccccCccccCccccchhhhhhhhhh
Q 046732          351 DVCIGWPGSMPDDQVLEKSALYQRASGGLL-----------KGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGE  419 (516)
Q Consensus       351 ~v~~g~pGs~hDs~V~~~S~L~~~l~~~~~-----------~~~~llGD~gYpl~~~LltPy~~~~lt~~q~~FN~~~s~  419 (516)
                      +|++||||++||+.|++.|.+........+           ...+++|+.+||+.+++|+||.++.++..++.||++|+.
T Consensus       149 ~v~vg~~Gs~~D~kvl~~~~~~~~~~~~~~~k~yl~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~elFN~rh~~  228 (326)
T KOG4585|consen  149 YVDVGWPGSAHDTKVLQDSLLYKRNFPHPPLKYYLVDSGYPLRPGLLGPIGFPLYSLLMFPYGGPQPTNSQELFNKRHSS  228 (326)
T ss_pred             EEEccCCCCccHHHHHHhhcccccccccCCccccccccCcccccccccccccccchhhhcccCCCCCCchHHHHhhhhhh
Confidence            999999999999999999988765543333           245677777788888888888888778899999999999


Q ss_pred             hhhhhhhhhhhccccccccccccccCCCCcchhhhHHHHHhhhhhhcCCCCCcccccCCCCCCC-----CccccccChhH
Q 046732          420 IQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNICEMMNEELDPELAFDLVDDEM-----VPEVALRSVSS  494 (516)
Q Consensus       420 ~R~~VE~aFG~LK~RFriL~~~~~~~~~~~~~iI~AccvLHNi~~~~~~~~~~~~~~~~~dd~~-----~p~~~~~~~~~  494 (516)
                      +|.++|++||+||.||+||+........+.+.||.|||+|||||++..+...+....+..+|..     .........-+
T Consensus       229 ~r~v~e~~fg~lk~rw~il~~~~~~~~~~~~~iV~a~caLHN~~~~~~~~~~~~~~~e~~~d~~~~~~~~~~~~~~~~~~  308 (326)
T KOG4585|consen  229 LRSVAERAFGVLKAKWRILQRREKYDLKKLPKIVTACCALHNIIRDSDEEDPDDPKWEKFDDYGENVAHLRYAPQQRDYM  308 (326)
T ss_pred             HHHHHHHHHHHhhhhhHHHhhcccccccchHHHHHHHHHHHHHHHhhcccccccccccccccccccchhcccchhHHHHH
Confidence            9999999999999999999988667788999999999999999998776543322222222221     11112223457


Q ss_pred             HHHHHHHHHHHhh
Q 046732          495 MKTRDSIAHNLLH  507 (516)
Q Consensus       495 ~~~Rd~ia~~l~~  507 (516)
                      ..+||.|+..||.
T Consensus       309 ~~~r~~l~~~l~~  321 (326)
T KOG4585|consen  309 EKIRDNLLSELWN  321 (326)
T ss_pred             HHHHHHHHHHHHh
Confidence            7889999998864

>PF13359 DDE_Tnp_4: DDE superfamily endonuclease

Probab=100.00  E-value=1.1e-36  Score=281.80  Aligned_cols=154  Identities=35%  Similarity=0.641  Sum_probs=138.3

Q ss_pred             CCceeeEEeCCCcccccccccccccccCCcccceeecceecCCCCeeccccCCCCCCCChhHhhhHHHHhhhhcCcceeE
Q 046732          304 MYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGV  383 (516)
Q Consensus       304 IDgThIpI~~P~~~~~~y~n~~~~~~n~K~~~Si~vq~V~D~~g~fi~v~~g~pGs~hDs~V~~~S~L~~~l~~~~~~~~  383 (516)
                      ||||||||.+|....    .....|+|+|+.|++++|+|||++|+|++++++||||+||+.||++|.+...+...++.++
T Consensus         1 iDgt~v~i~~P~~~~----~~~~~y~~~k~~~~~~~q~v~d~~g~i~~v~~~~~Gs~~D~~i~~~s~~~~~l~~~~~~~~   76 (158)
T PF13359_consen    1 IDGTHVPIQRPSDKE----EQREFYSGKKKNHSLKVQIVCDPDGRIIYVSVGWPGSVHDSTIFRQSGLLDRLEQAFPPGE   76 (158)
T ss_pred             CccEEEEEEeCCccc----cccccccCCCCcceEeEEEEEeccceeEeeecccccccccccccccccccceeecccccCc
Confidence            799999999998621    1123346679999999999999999999999999999999999999998877653366789


Q ss_pred             EEEeccCCCCcccccCccc---cCccccchhhhhhhhhhhhhhhhhhhhhccccccccccccccC-CCCcchhhhHHHHH
Q 046732          384 WIVGGSGYPLMDWVLVPYT---QQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVK-LQDLPVVLGACCVL  459 (516)
Q Consensus       384 ~llGD~gYpl~~~LltPy~---~~~lt~~q~~FN~~~s~~R~~VE~aFG~LK~RFriL~~~~~~~-~~~~~~iI~AccvL  459 (516)
                      |+|||+|||+.+++|+||+   +..++..+..||++|+++|.+||++||+||+||+||+.+++.+ +..+..+|.|||+|
T Consensus        77 ~~l~D~gy~~~~~~~~P~~~~~~~~l~~~e~~~N~~~s~~R~~vE~~~~~lK~rf~~l~~~~~~~~~~~~~~ii~~~~~L  156 (158)
T PF13359_consen   77 YLLGDSGYPLSPYLLTPYKKPKGRELTPEEKEFNRRHSSARIIVERAFGRLKSRFRILRGRLRLSRPEKAPQIILACCVL  156 (158)
T ss_pred             cccccccccccccccccccccccccccccccchhccccceeeeeHHHHHHHHHhcccCCcccCCCcHhHHHHHHheeEEE
Confidence            9999999999999999996   5568999999999999999999999999999999998888888 88999999999999


Q ss_pred             hh
Q 046732          460 HN  461 (516)
Q Consensus       460 HN  461 (516)
                      ||
T Consensus       157 hN  158 (158)
T PF13359_consen  157 HN  158 (158)
T ss_pred             EC
Confidence            99

>PF04827 Plant_tran: Plant transposon protein; InterPro: IPR006912 This entry represents a putative Harbinger transposase-derived nuclease, which is thought to have nuclease activity

Probab=99.97  E-value=1.5e-31  Score=249.97  Aligned_cols=185  Identities=21%  Similarity=0.311  Sum_probs=163.8

Q ss_pred             ccccCCChhHHHhhHHHHHhhhCCCccccCCCceeeEEe-CCCcccccccccccccccCCcccceeecceecCCCCeecc
Q 046732          274 KYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTTHVPII-APKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGAFTDV  352 (516)
Q Consensus       274 ~~I~~P~~ee~~~i~~~F~~~~gfP~~vGaIDgThIpI~-~P~~~~~~y~n~~~~~~n~K~~~Si~vq~V~D~~g~fi~v  352 (516)
                      +|++-|+.++++++.+.+ +..|||+.+|+|||+|+.+. +|......|.      +|+++..++.+++|++.+.+|+++
T Consensus         2 ~YLr~P~~~d~~rll~~~-e~rGFpGmlGSIDCmHw~WkncP~aw~g~~~------~G~~g~pTiiLEaVAs~dlwIWha   74 (205)
T PF04827_consen    2 EYLRRPTNEDLERLLQIG-EARGFPGMLGSIDCMHWEWKNCPTAWKGQYT------RGKEGVPTIILEAVASHDLWIWHA   74 (205)
T ss_pred             cccCCCChhHHHHHHHhh-hhcCCCccccceeEEEeehhcchHHhhhccc------CCCCCCCeehhhhhhccchhhhhe
Confidence            578889999999998665 45899999999999999999 6666556554      457899999999999999999999


Q ss_pred             ccCCCCCCCChhHhhhHHHHhhhhcCcce------------eEEEEeccCCCCcccccCccccCccccchhhhhhhhhhh
Q 046732          353 CIGWPGSMPDDQVLEKSALYQRASGGLLK------------GVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEI  420 (516)
Q Consensus       353 ~~g~pGs~hDs~V~~~S~L~~~l~~~~~~------------~~~llGD~gYpl~~~LltPy~~~~lt~~q~~FN~~~s~~  420 (516)
                      ..|.|||.+|..|+..|+|+..+..+..+            -.|.|+|..||-...++.+.+.|. +..++.|.++..++
T Consensus        75 ffG~~GS~NDiNVL~~Splf~~~~~G~ap~v~f~VNg~~Y~~gYYLaDGiYP~watfvktI~~p~-~~k~k~fa~~QE~~  153 (205)
T PF04827_consen   75 FFGMPGSNNDINVLDRSPLFDDLLQGQAPRVQFTVNGHEYNMGYYLADGIYPEWATFVKTISLPQ-GEKRKLFAKHQESA  153 (205)
T ss_pred             eeccCCcccccccccccHHHHHHhcCcCCceEEEecCeecccceeeccCcCcchHhHhhhcchhh-chhhHHHHHhCHHH
Confidence            99999999999999999999888665321            358999999999999999999876 66899999999999


Q ss_pred             hhhhhhhhhhccccccccccccc-cCCCCcchhhhHHHHHhhhhhhc
Q 046732          421 QRVSKDAFARLKGRWCCLQKRTE-VKLQDLPVVLGACCVLHNICEMM  466 (516)
Q Consensus       421 R~~VE~aFG~LK~RFriL~~~~~-~~~~~~~~iI~AccvLHNi~~~~  466 (516)
                      |.-||+|||+|++||+|++.+.+ ++.+.+..|+.||++||||+++.
T Consensus       154 RKDVErAFGVLQaRfaIi~~p~r~w~~~~l~~Im~aCiILHNMIvED  200 (205)
T PF04827_consen  154 RKDVERAFGVLQARFAIIRGPARLWDREDLANIMRACIILHNMIVED  200 (205)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhccCHHHHHHHHHHHHHhhheeEec
Confidence            99999999999999999999865 57788999999999999999853

However it does not have transposase activity [, ]. ; GO: 0016788 hydrolase activity, acting on ester bonds

>PF13612 DDE_Tnp_1_3: Transposase DDE domain

Probab=98.84  E-value=7.1e-10  Score=102.90  Aligned_cols=135  Identities=16%  Similarity=0.195  Sum_probs=97.1

Q ss_pred             CCccccCCCceeeEEeCCCccc-ccccccc--cccccCCcccceeecceecCCCCeeccccCCCCCCCChhHhhhHHHHh
Q 046732          297 IPNVVGSMYTTHVPIIAPKISV-AAYFNKR--HTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQ  373 (516)
Q Consensus       297 fP~~vGaIDgThIpI~~P~~~~-~~y~n~~--~~~~n~K~~~Si~vq~V~D~~g~fi~v~~g~pGs~hDs~V~~~S~L~~  373 (516)
                      -+..+.+||.|.||++.|.... ...+...  .-|+..+.+|++++.++|+..|.++.+.+. ||++||..++.      
T Consensus         3 ~~~~i~~iDS~Pi~vC~~~R~~r~k~~~~~a~~G~~a~~~fyGfKlHllv~~~G~i~~~~lT-~an~~D~~~~~------   75 (155)
T PF13612_consen    3 QCTGIYIIDSFPIPVCHNIRIKRHKVFKGLAYRGYCAMGWFYGFKLHLLVNDSGEIVAFTLT-PANVHDRKVLE------   75 (155)
T ss_pred             CccEEEEEecCChhHhCccchhhhccccCccccceeccceeEeeeeeeEEccCCcEEEEEEc-ccccccccccc------
Confidence            3556789999999999776321 1111110  012333567899999999999999988775 99999999884      


Q ss_pred             hhhcCcceeEEEEeccCCCCcc----------cccCccccCccccchhhhhhhhhhhhhhhhhhhhhcccccccccc
Q 046732          374 RASGGLLKGVWIVGGSGYPLMD----------WVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQK  440 (516)
Q Consensus       374 ~l~~~~~~~~~llGD~gYpl~~----------~LltPy~~~~lt~~q~~FN~~~s~~R~~VE~aFG~LK~RFriL~~  440 (516)
                      .+...+  ...|+||.||-...          .|+||.+..--......+++.+.+.|.+||-+|+.||+.|.+=+.
T Consensus        76 ~l~~~~--~g~l~gDkGYis~~L~~~L~~~gI~L~t~~RkNmk~~~~~~~~~~l~~~R~~IETvfs~Lk~~~~ie~~  150 (155)
T PF13612_consen   76 ELSENL--KGKLFGDKGYISKELKDELKEQGIKLITPRRKNMKNKLMPLFDKLLLRKRRIIETVFSQLKNQFNIEHS  150 (155)
T ss_pred             cccccc--ccceecchhhhcchHHhhhhhceEEEeccccccccccccchhhhhhhheeeEeehHHHHHHHhhceEee
Confidence            222222  34799999997554          388998854222234567889999999999999999999887654

>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease

Probab=98.67  E-value=8.9e-09  Score=78.39  Aligned_cols=51  Identities=18%  Similarity=0.284  Sum_probs=48.3

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhcc
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLM  272 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L~  272 (516)
                      .++++++++++|.||+.|.++.++|..||||+|||++++++++++|+..+.
T Consensus         2 kLs~~d~lll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~~~~L~~~l~   52 (53)
T PF13613_consen    2 KLSLEDQLLLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEWIPLLYQVLK   52 (53)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999998653

>PF01609 DDE_Tnp_1: Transposase DDE domain; InterPro: IPR002559 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=97.70  E-value=2.3e-06  Score=80.81  Aligned_cols=151  Identities=16%  Similarity=0.118  Sum_probs=81.7

Q ss_pred             ccccCCCceeeEEeCCCcccccccccccccccCCcccceeeccee-cCCCCeeccccCCCCCCCChhHhhhHHHHhhhhc
Q 046732          299 NVVGSMYTTHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVV-NPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASG  377 (516)
Q Consensus       299 ~~vGaIDgThIpI~~P~~~~~~y~n~~~~~~n~K~~~Si~vq~V~-D~~g~fi~v~~g~pGs~hDs~V~~~S~L~~~l~~  377 (516)
                      ..+-+||+|+|+.. +......++      .+++.....++++++ +..|.++.+.+. +|+.+|...+..  +...  .
T Consensus         4 ~~~~~iD~T~i~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~d~~~~~~--ll~~--~   71 (213)
T PF01609_consen    4 RRVVAIDGTTIRTP-HDKSARRYK------KGKKRGFGYKLHLAVDDNSGLPLSVKVT-PGNVHDSKALPE--LLER--K   71 (213)
T ss_dssp             EEEEEEETTT--EE-EEEEE-B-S------SGGGHSSHGGHHHHHHHHHGGGGGGEEE-EEEGG-HHHHHH--HHTT---
T ss_pred             CeEEEEECcEEEee-cchhhhccc------CCCCcCCCEeEEEEEeecccceeeeecc-ccccceeecccc--cccc--c
Confidence            35668999999998 221112222      234556677999998 567778888887 999999998885  3222  2


Q ss_pred             CcceeEEEEeccCCCCccc----------ccCccccCccc----------------------------------cchhhh
Q 046732          378 GLLKGVWIVGGSGYPLMDW----------VLVPYTQQHLT----------------------------------WTQHAF  413 (516)
Q Consensus       378 ~~~~~~~llGD~gYpl~~~----------LltPy~~~~lt----------------------------------~~q~~F  413 (516)
                      ....+.++++|+||.....          .+.|.+.....                                  ......
T Consensus        72 ~~~~~~~vv~D~gy~s~~~~~~l~~~~~~~vi~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (213)
T PF01609_consen   72 PGRKPDLVVADRGYDSAENLEALKERGIHFVIRLKKNRKKKIQKIENKFWKSFDRRSARKKPKQKSKRVRVVIRKEQKKK  151 (213)
T ss_dssp             ----EEEEEE-S--BBTTHHHHHHTS---EEEEE--EEEE-TTS-EEEE--EEEEEEEEEEETGGGEEEEEEEEEECS--
T ss_pred             ccccccceeecccccceeccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence            2345789999999986652          23444322100                                  111112


Q ss_pred             hhh--------------hhhhhhhhhhhhhhccccccccccccccCCCCcchhhhHHHHHhhh
Q 046732          414 NEK--------------IGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLGACCVLHNI  462 (516)
Q Consensus       414 N~~--------------~s~~R~~VE~aFG~LK~RFriL~~~~~~~~~~~~~iI~AccvLHNi  462 (516)
                      ...              +.+.|-.||+.|..||+.|..= .....+...+...+.+|++-.|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~Y~~Rw~IE~~f~~lK~~~~l~-~~~~~~~~~~~~~~~~~~la~nl  213 (213)
T PF01609_consen  152 GYFLVTNITTLPRDTAALYRRRWQIERFFRELKQFLGLE-RLRVRSPERIEAHLFLTLLAYNL  213 (213)
T ss_dssp             TTS---EEEEEESS--SHHHCGGHHHHHHHHHTTTTTGG-GS--SSHHHHHHHHHHHHHH---
T ss_pred             cccccccccccccccceeecccchhhHHHHHHHhcCCCc-hhcccCHHHHHHHHHHHHhhCcC
Confidence            222              8889999999999999865532 21112334455556666665554

Transposases have been grouped into various families [, , ]. This family includes the IS4 transposase. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A 1B7E_A.

>PF13586 DDE_Tnp_1_2: Transposase DDE domain

Probab=96.55  E-value=0.00069  Score=56.77  Aligned_cols=73  Identities=19%  Similarity=0.315  Sum_probs=47.6

Q ss_pred             EEeccCCCCccc----------ccCccccCccccchhhhhhhhhhhhhhhhhhhhhccccccccccccccCCCCcchhhh
Q 046732          385 IVGGSGYPLMDW----------VLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQKRTEVKLQDLPVVLG  454 (516)
Q Consensus       385 llGD~gYpl~~~----------LltPy~~~~lt~~q~~FN~~~s~~R~~VE~aFG~LK~RFriL~~~~~~~~~~~~~iI~  454 (516)
                      +++|.||-....          +..|-+.......+..+...+...|.+||++|+.|| +|+.|....+-.+......|.
T Consensus         1 v~aDkgYd~~~~r~~l~~~gi~~~i~~~~~~~~~~~~~~d~~~~~~Rw~VEr~f~wlk-~~Rrl~~ryek~~~s~~~~v~   79 (88)
T PF13586_consen    1 VLADKGYDSRALREYLRERGIRPVIPKRGRRKKRRPRKFDFRLYKRRWVVERTFAWLK-RFRRLATRYEKLASSFLAFVH   79 (88)
T ss_pred             CcccCCcCCHHHHHHHHHCCCEEecCCCCCccccccCccchhhhccceehhhhhHHHH-HcCccccccccCHHHHHHHHH
Confidence            468888865331          222222222113467888899999999999999999 599998877655555444443


Q ss_pred             HHHH
Q 046732          455 ACCV  458 (516)
Q Consensus       455 Accv  458 (516)
                      -+|+
T Consensus        80 la~~   83 (88)
T PF13586_consen   80 LACI   83 (88)
T ss_pred             HHHH
Confidence            3343

>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere

Probab=94.46  E-value=0.014  Score=44.35  Aligned_cols=42  Identities=26%  Similarity=0.540  Sum_probs=31.4

Q ss_pred             CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732          220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE  262 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~  262 (516)
                      |..+++++++-+ +.++-.|.+..+||..|||+.|||+.++..
T Consensus         4 R~~LTl~eK~~i-I~~~e~g~s~~~ia~~fgv~~sTv~~I~K~   45 (53)
T PF04218_consen    4 RKSLTLEEKLEI-IKRLEEGESKRDIAREFGVSRSTVSTILKN   45 (53)
T ss_dssp             SSS--HHHHHHH-HHHHHCTT-HHHHHHHHT--CCHHHHHHHC
T ss_pred             CccCCHHHHHHH-HHHHHcCCCHHHHHHHhCCCHHHHHHHHHh
Confidence            568999999988 456788889999999999999999887654

Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.

>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=93.28  E-value=0.062  Score=39.90  Aligned_cols=45  Identities=20%  Similarity=0.391  Sum_probs=37.5

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHH
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAI  267 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL  267 (516)
                      .+|+.++-.+.++| -.|.++..+|..+|+|.+||+++..+.+.-|
T Consensus         4 ~L~~~er~vi~~~y-~~~~t~~eIa~~lg~s~~~V~~~~~~al~kL   48 (50)
T PF04545_consen    4 QLPPREREVIRLRY-FEGLTLEEIAERLGISRSTVRRILKRALKKL   48 (50)
T ss_dssp             TS-HHHHHHHHHHH-TST-SHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHh-cCCCCHHHHHHHHCCcHHHHHHHHHHHHHHh
Confidence            58899999999888 6889999999999999999999887776544

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....

>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms

Probab=92.68  E-value=0.026  Score=41.31  Aligned_cols=39  Identities=18%  Similarity=0.237  Sum_probs=29.1

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhh
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVL  261 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~  261 (516)
                      .++.+ ++.-++..++.|.+...||..||||++||.+++.
T Consensus         5 ~~~~~-~~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l~   43 (45)
T PF02796_consen    5 KLSKE-QIEEIKELYAEGMSIAEIAKQFGVSRSTVYRYLN   43 (45)
T ss_dssp             SSSHC-CHHHHHHHHHTT--HHHHHHHTTS-HHHHHHHHC
T ss_pred             CCCHH-HHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence            34443 5666777889999999999999999999998864

Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....

>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A

Probab=92.05  E-value=0.04  Score=40.17  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=22.3

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE  262 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~  262 (516)
                      .++++++..+.- ++..|.+++.||..+|+|+|||++.+.+
T Consensus         4 ~Lt~~eR~~I~~-l~~~G~s~~~IA~~lg~s~sTV~relkR   43 (44)
T PF13936_consen    4 HLTPEERNQIEA-LLEQGMSIREIAKRLGRSRSTVSRELKR   43 (44)
T ss_dssp             --------HHHH-HHCS---HHHHHHHTT--HHHHHHHHHH
T ss_pred             chhhhHHHHHHH-HHHcCCCHHHHHHHHCcCcHHHHHHHhc
Confidence            467777777664 4689999999999999999999887653

>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096)

Probab=90.16  E-value=0.34  Score=39.32  Aligned_cols=64  Identities=22%  Similarity=0.254  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHhhccccccCCCCCCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732          197 RRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC  264 (516)
Q Consensus       197 sk~tF~~L~~~L~~~i~k~~t~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~  264 (516)
                      |-+....|-..|.+.   ....++..++..+-|-..|+.|.+|+.++.|-..|| +.+||++.+.+..
T Consensus         2 sD~~W~~i~p~lp~~---~~~~~~~~~~~R~v~~ail~~lrtG~~Wr~LP~~fg-~~~tv~~~f~rW~   65 (75)
T PF13340_consen    2 SDEEWALIEPLLPPR---KPRGGRPRIDLREVLNAILYVLRTGCPWRDLPEDFG-PWSTVYRRFRRWS   65 (75)
T ss_pred             CHHHHHHHHhhCCCC---CCCCCCCccchHHHHhcccccceecceecccchhcc-CcCcHHHHHHHHH
Confidence            444444454444431   122346678999999999999999999999999999 7888888776654

>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D

Probab=90.07  E-value=0.089  Score=43.18  Aligned_cols=44  Identities=30%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             HHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhcc
Q 046732          229 VAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLM  272 (516)
Q Consensus       229 L~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L~  272 (516)
                      +-++-|.+.+..+.+..|..||||+||||+=+.+=+..|...|+
T Consensus         9 i~i~~yIi~~~aTVR~~Ak~FGvSKSTVHkDvteRL~~in~~La   52 (82)
T PF12116_consen    9 IEIANYIIETKATVRQAAKVFGVSKSTVHKDVTERLPKINPELA   52 (82)
T ss_dssp             HHHHHHHHHH---HHHHHHHHTS-HHHHHHHHTTHHHHH-HHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHCCcHHHHHHHHHHHHHhcCHHHH
Confidence            55666788899999999999999999999988877776666553

It is present in genomes if, and only if, the species is capable of endospore formation. In Bacillus subtilis SpoIIID is a DNA binding protein that is involved in gene repression as well as activation [].; PDB: 2L0K_A.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=89.68  E-value=0.21  Score=37.48  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT  265 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~  265 (516)
                      .+|+.++.++.|.|+ .|.++.++|..+|+|.+||...+.+...
T Consensus        10 ~L~~~~r~i~~l~~~-~g~s~~eIa~~l~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   10 QLPERQREIFLLRYF-QGMSYAEIAEILGISESTVKRRLRRARK   52 (54)
T ss_dssp             CS-HHHHHHHHHHHT-S---HHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH-HCcCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence            478888888877655 8999999999999999999877766543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>PF13518 HTH_28: Helix-turn-helix domain

Probab=89.52  E-value=0.13  Score=38.00  Aligned_cols=37  Identities=24%  Similarity=0.421  Sum_probs=30.3

Q ss_pred             HHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732          228 RVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT  265 (516)
Q Consensus       228 kL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~  265 (516)
                      ++.++..++ .|.++..++..||||.+||.+++..+..
T Consensus         2 r~~iv~~~~-~g~s~~~~a~~~gis~~tv~~w~~~y~~   38 (52)
T PF13518_consen    2 RLQIVELYL-EGESVREIAREFGISRSTVYRWIKRYRE   38 (52)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHCCCHhHHHHHHHHHHh
Confidence            456667777 6779999999999999999888877654

>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia

Probab=88.90  E-value=0.27  Score=34.40  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=17.3

Q ss_pred             CChhHHHHHcCCCHHHHHHHHH
Q 046732          185 YPEEEFKKWFRMRRQTFDMICE  206 (516)
Q Consensus       185 ~~d~~Fk~~FRmsk~tF~~L~~  206 (516)
                      ++|++|...|+|+++.|..|-.
T Consensus         2 Lsd~dF~~vFgm~~~eF~~lP~   23 (36)
T PF02209_consen    2 LSDEDFEKVFGMSREEFYKLPK   23 (36)
T ss_dssp             S-HHHHHHHHSS-HHHHHHS-H
T ss_pred             cCHHHHHHHHCCCHHHHHHChH
Confidence            5799999999999999998754

The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....

>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C

Probab=88.05  E-value=0.1  Score=38.49  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             hHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732          227 QRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC  264 (516)
Q Consensus       227 ekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~  264 (516)
                      .++.+. ..+..|.+.+.++..+|||.+||++++.++.
T Consensus         6 ~R~~ii-~l~~~G~s~~~ia~~lgvs~~Tv~~w~kr~~   42 (50)
T PF13384_consen    6 RRAQII-RLLREGWSIREIAKRLGVSRSTVYRWIKRYR   42 (50)
T ss_dssp             ----HH-HHHHHT--HHHHHHHHTS-HHHHHHHHT---
T ss_pred             HHHHHH-HHHHCCCCHHHHHHHHCcCHHHHHHHHHHcc
Confidence            344433 3344599999999999999999999887653

>smart00153 VHP Villin headpiece domain

Probab=87.43  E-value=0.44  Score=33.36  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=19.0

Q ss_pred             CChhHHHHHcCCCHHHHHHHH
Q 046732          185 YPEEEFKKWFRMRRQTFDMIC  205 (516)
Q Consensus       185 ~~d~~Fk~~FRmsk~tF~~L~  205 (516)
                      ++|++|...|+||++.|..|-
T Consensus         2 LsdeeF~~vfgmsr~eF~~LP   22 (36)
T smart00153        2 LSDEDFEEVFGMTREEFYKLP   22 (36)
T ss_pred             CCHHHHHHHHCCCHHHHHhCc
Confidence            578999999999999998874

>smart00351 PAX Paired Box domain

Probab=86.72  E-value=0.36  Score=43.19  Aligned_cols=43  Identities=12%  Similarity=0.138  Sum_probs=37.2

Q ss_pred             CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732          221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC  264 (516)
Q Consensus       221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~  264 (516)
                      .+++.+.+.-+.+.+. .|.+.+.++..||||.+||++++.++-
T Consensus        16 ~~~s~~~R~riv~~~~-~G~s~~~iA~~~gvs~~tV~kwi~r~~   58 (125)
T smart00351       16 RPLPDEERQRIVELAQ-NGVRPCDISRQLCVSHGCVSKILGRYY   58 (125)
T ss_pred             CCCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4588888888877765 899999999999999999999988764

>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella

Probab=86.34  E-value=0.42  Score=31.21  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=27.4

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeeh
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKL  259 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsri  259 (516)
                      .++.+.+..+... +..|.++..++..||++.+|++++
T Consensus         5 ~~~~~~~~~i~~~-~~~~~s~~~ia~~~~is~~tv~~~   41 (42)
T cd00569           5 KLTPEQIEEARRL-LAAGESVAEIARRLGVSRSTLYRY   41 (42)
T ss_pred             cCCHHHHHHHHHH-HHcCCCHHHHHHHHCCCHHHHHHh
Confidence            4555555444443 457889999999999999998765

The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D

>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []

Probab=85.79  E-value=0.24  Score=36.29  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=27.1

Q ss_pred             hhHHHHHHhhcccC-Ccchhhhhhcccccceeeehhh
Q 046732          226 RQRVAVCIWRLATG-EPLRLVSKRFGLGISTCHKLVL  261 (516)
Q Consensus       226 eekL~v~L~~La~G-~s~~~la~~Fgis~STvsrii~  261 (516)
                      ++.+..+|..+.+| .+++..+..|||++||+++.++
T Consensus         2 ee~l~~Ai~~v~~g~~S~r~AA~~ygVp~sTL~~r~~   38 (45)
T PF05225_consen    2 EEDLQKAIEAVKNGKMSIRKAAKKYGVPRSTLRRRLR   38 (45)
T ss_dssp             HHHHHHHHHHHHTTSS-HHHHHHHHT--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHc
Confidence            46677778777788 9999999999999999876554

In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.

>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481

Probab=85.31  E-value=0.53  Score=39.40  Aligned_cols=47  Identities=17%  Similarity=0.214  Sum_probs=41.6

Q ss_pred             CCCCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732          218 TLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC  264 (516)
Q Consensus       218 ~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~  264 (516)
                      .....+++..++.++-..+..|.+...++..||||..|+++++.++-
T Consensus         4 H~nA~Lt~~gR~~lv~~vv~~g~~~a~aA~~~gVS~~Ta~kW~~Ryr   50 (85)
T PF13011_consen    4 HKNARLTPRGRLRLVRRVVEQGWPVAHAAAEFGVSRRTAYKWLARYR   50 (85)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHH
Confidence            34567999999999999999999999999999999999988876653

>cd00131 PAX Paired Box domain

Probab=84.36  E-value=0.61  Score=41.97  Aligned_cols=45  Identities=11%  Similarity=0.122  Sum_probs=37.8

Q ss_pred             CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732          220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT  265 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~  265 (516)
                      ..++|.+.+.-|.+.+ ..|.+.+.++..||||.+||.+++.++-.
T Consensus        15 ~~~lS~d~R~rIv~~~-~~G~s~~~iA~~~~Vs~~tV~r~i~r~~e   59 (128)
T cd00131          15 GRPLPDSIRQRIVELA-QSGIRPCDISRQLRVSHGCVSKILNRYYE   59 (128)
T ss_pred             CCcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4578888887777665 69999999999999999999999887653

>PRK04217 hypothetical protein; Provisional

Probab=83.40  E-value=0.76  Score=40.38  Aligned_cols=50  Identities=14%  Similarity=0.108  Sum_probs=39.6

Q ss_pred             CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      ..++.+++-++.|+ ...|.++.+||..+|||.+||.+++.+....|...+
T Consensus        41 ~~Lt~eereai~l~-~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkLre~L   90 (110)
T PRK04217         41 IFMTYEEFEALRLV-DYEGLTQEEAGKRMGVSRGTVWRALTSARKKVAQML   90 (110)
T ss_pred             ccCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence            45777887555444 348889999999999999999999998877776654

>PRK09413 IS2 repressor TnpA; Reviewed

Probab=83.29  E-value=0.77  Score=40.75  Aligned_cols=46  Identities=15%  Similarity=0.239  Sum_probs=41.6

Q ss_pred             CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732          220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT  265 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~  265 (516)
                      +...+.+.++-++...+..|.++..++..|||+.+|+++++.++..
T Consensus        10 rr~ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~~   55 (121)
T PRK09413         10 RRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQE   55 (121)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHhh
Confidence            5678999999999999999999999999999999999999888653

>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon

Probab=83.00  E-value=0.76  Score=33.81  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=33.8

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHH
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAI  267 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL  267 (516)
                      .++..++-++.  ++..|.++..++..+|+|.+||.+++.++...+
T Consensus         3 ~l~~~e~~i~~--~~~~g~s~~eia~~l~is~~tv~~~~~~~~~kl   46 (58)
T smart00421        3 SLTPREREVLR--LLAEGLTNKEIAERLGISEKTVKTHLSNIMRKL   46 (58)
T ss_pred             CCCHHHHHHHH--HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            35666655333  357899999999999999999999888775544

lux regulon (activates the bioluminescence operon

>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=82.34  E-value=0.55  Score=42.94  Aligned_cols=43  Identities=28%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC  264 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~  264 (516)
                      +.+...+.+++..++..|.+.+.++..||||.|||.+.+.+.-
T Consensus         4 ~~s~~~R~~~~~~~~~~G~S~re~Ak~~gvs~sTvy~wv~r~~   46 (138)
T COG3415           4 PFSNDLRERVVDAVVGEGLSCREAAKRFGVSISTVYRWVRRYR   46 (138)
T ss_pred             hhhHHHHHHHHHHHHHcCccHHHHHHHhCccHHHHHHHHHHhc
Confidence            3455677888889999999999999999999999998887764

>PRK09639 RNA polymerase sigma factor SigX; Provisional

Probab=82.09  E-value=0.87  Score=41.79  Aligned_cols=48  Identities=13%  Similarity=0.245  Sum_probs=41.7

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      .+|+.++-++.|++  .|.++..||..+|++.+||...+.+....|...|
T Consensus       112 ~L~~~~r~il~l~~--~g~s~~eIA~~lgis~~tV~~~i~ra~~~Lr~~l  159 (166)
T PRK09639        112 KMTERDRTVLLLRF--SGYSYKEIAEALGIKESSVGTTLARAKKKFRKIY  159 (166)
T ss_pred             cCCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            47888998888877  9999999999999999999998888877776644

>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs)

Probab=81.34  E-value=0.91  Score=32.68  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             CCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHH
Q 046732          223 IPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCT  265 (516)
Q Consensus       223 l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~  265 (516)
                      +|+.++-++.+.++ .|.++..++..+|++.+||.+++.....
T Consensus        11 l~~~~~~~~~~~~~-~~~~~~~ia~~~~~s~~~i~~~~~~~~~   52 (55)
T cd06171          11 LPEREREVILLRFG-EGLSYEEIAEILGISRSTVRQRLHRALK   52 (55)
T ss_pred             CCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            56666666655554 8899999999999999999888776543

A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=81.18  E-value=1  Score=47.97  Aligned_cols=129  Identities=12%  Similarity=0.122  Sum_probs=69.4

Q ss_pred             hcccCCcchhhhhh----cc---cccceeeehhhhhHHHHHhhcccccccCCChhHHHhhHHHHHhhhCCCccccCCCce
Q 046732          235 RLATGEPLRLVSKR----FG---LGISTCHKLVLEVCTAIRSVLMPKYLQWPDDDALRKIKDEFEVISGIPNVVGSMYTT  307 (516)
Q Consensus       235 ~La~G~s~~~la~~----Fg---is~STvsrii~~v~~aL~~~L~~~~I~~P~~ee~~~i~~~F~~~~gfP~~vGaIDgT  307 (516)
                      .++.|.|.++++..    +|   +|++|||+++..+...+.. +..+                  ...+.|=++-.|||+
T Consensus       110 ly~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~~~-w~~R------------------~L~~~~y~~l~iD~~  170 (381)
T PF00872_consen  110 LYLKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEVEA-WRNR------------------PLESEPYPYLWIDGT  170 (381)
T ss_pred             hhccccccccccchhhhhhcccccCchhhhhhhhhhhhhHHH-Hhhh------------------ccccccccceeeeee
Confidence            35566666665544    45   8999999987776544433 1110                  001122246689999


Q ss_pred             eeEEeCCCcccccccccccccccCCcccceeecceecCCCC--eeccccCCCCCCCChhHhhhHHHHhhh-hcCcceeEE
Q 046732          308 HVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVNPNGA--FTDVCIGWPGSMPDDQVLEKSALYQRA-SGGLLKGVW  384 (516)
Q Consensus       308 hIpI~~P~~~~~~y~n~~~~~~n~K~~~Si~vq~V~D~~g~--fi~v~~g~pGs~hDs~V~~~S~L~~~l-~~~~~~~~~  384 (516)
                      |+.+..-.    .           -..-++.+-+.+|.+|+  ++.+.++   ..-....|.  .++..+ .+|+.....
T Consensus       171 ~~kvr~~~----~-----------~~~~~~~v~iGi~~dG~r~vLg~~~~---~~Es~~~W~--~~l~~L~~RGl~~~~l  230 (381)
T PF00872_consen  171 YFKVREDG----R-----------VVKKAVYVAIGIDEDGRREVLGFWVG---DRESAASWR--EFLQDLKERGLKDILL  230 (381)
T ss_pred             eccccccc----c-----------cccchhhhhhhhhcccccceeeeecc---cCCccCEee--ecchhhhhccccccce
Confidence            99986211    0           11123445556677774  5665554   322333333  233333 456666678


Q ss_pred             EEeccCCCCcccccCccc
Q 046732          385 IVGGSGYPLMDWVLVPYT  402 (516)
Q Consensus       385 llGD~gYpl~~~LltPy~  402 (516)
                      +++|..=.+..-+-.-|+
T Consensus       231 vv~Dg~~gl~~ai~~~fp  248 (381)
T PF00872_consen  231 VVSDGHKGLKEAIREVFP  248 (381)
T ss_pred             eecccccccccccccccc
Confidence            888855444444444443

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PRK00118 putative DNA-binding protein; Validated

Probab=80.46  E-value=1.1  Score=38.95  Aligned_cols=48  Identities=8%  Similarity=0.119  Sum_probs=38.9

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhh
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSV  270 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~  270 (516)
                      .+|..++-++.|+ +-.|.++..||..+|+|.+||++.+.+....+...
T Consensus        17 ~L~ekqRevl~L~-y~eg~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~   64 (104)
T PRK00118         17 LLTEKQRNYMELY-YLDDYSLGEIAEEFNVSRQAVYDNIKRTEKLLEDY   64 (104)
T ss_pred             cCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence            4677777776555 45699999999999999999999998877766664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	516
1tc3_C	51	Protein (TC3 transposase); DNA binding, helix-turn	93.23
2p7v_B	68	Sigma-70, RNA polymerase sigma factor RPOD; RSD, r	91.98
2w7n_A	101	TRFB transcriptional repressor protein; INCP, plas	91.04
2glo_A	59	Brinker CG9653-PA; protein-DNA complex, helix-turn	90.88
1ku3_A	73	Sigma factor SIGA; helix-turn-helix, transcription	90.19
1tty_A	87	Sigma-A, RNA polymerase sigma factor RPOD; helix-t	89.59
2jn6_A	97	Protein CGL2762, transposase; GFT PSI-2, protein s	89.59
1wy3_A	35	Villin; structural protein; HET: NLE; 0.95A {Synth	89.46
1jko_C	52	HIN recombinase, DNA-invertase HIN; water-mediated	88.98
2o8x_A	70	Probable RNA polymerase sigma-C factor; promoter r	88.58
1und_A	37	Advillin, P92; actin binding, F-actin binding, cyt	88.39
3hug_A	92	RNA polymerase sigma factor; ECF sigma factor, zin	87.73
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	87.48
3t72_q	99	RNA polymerase sigma factor RPOD, DNA-directed RN	85.01
2elh_A	87	CG11849-PA, LD40883P; structural genomics, NPPSFA,	82.79
1u78_A	141	TC3 transposase, transposable element TC3 transpos	82.59
1fse_A	74	GERE; helix-turn-helix DNA-binding protein transcr	81.51
1rp3_A	239	RNA polymerase sigma factor sigma-28 (FLIA); trans	80.59
1hlv_A	131	CENP-B, major centromere autoantigen B; helix-turn	80.51
1iuf_A	144	Centromere ABP1 protein; riken structural genomics	80.33

>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2

Probab=93.23  E-value=0.026  Score=39.47  Aligned_cols=41  Identities=10%  Similarity=0.103  Sum_probs=32.4

Q ss_pred             CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732          221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE  262 (516)
Q Consensus       221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~  262 (516)
                      ..++.+++..+... +..|.++..+|..+|||.+||.+++..
T Consensus         4 ~~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~   44 (51)
T 1tc3_C            4 SALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD   44 (51)
T ss_dssp             CCCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence            46777777555544 468999999999999999999887654

>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2

Probab=91.98  E-value=0.079  Score=40.52  Aligned_cols=50  Identities=14%  Similarity=0.177  Sum_probs=42.4

Q ss_pred             CCCHhhHHHHHHhh-c--ccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          222 AIPVRQRVAVCIWR-L--ATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~-L--a~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      .+|+.++-.+.|+| |  ..|.++..+|..+|+|.+||...+.+....|...+
T Consensus         5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~   57 (68)
T 2p7v_B            5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS   57 (68)
T ss_dssp             CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred             cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence            58999998888888 3  58999999999999999999998888777666543

>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}

Probab=91.04  E-value=0.088  Score=44.32  Aligned_cols=59  Identities=20%  Similarity=0.324  Sum_probs=46.6

Q ss_pred             CCCHHHHHHHHHHhhccccccCCCCCCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHH
Q 046732          195 RMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAI  267 (516)
Q Consensus       195 Rmsk~tF~~L~~~L~~~i~k~~t~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL  267 (516)
                      |||.+.|+.++..++             ++ +..+-++-.||-.|.++..|+..+|+|+++|++++.+.-...
T Consensus         4 rmT~~eFe~~~~~l~-------------~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~   62 (101)
T 2w7n_A            4 RLTESQFQEAIQGLE-------------VG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF   62 (101)
T ss_dssp             CCCHHHHHHHHTTCC-------------CC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHccCC-------------hH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            799999999876441             21 134556677889999999999999999999999988765543

>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}

Probab=90.88  E-value=0.068  Score=39.91  Aligned_cols=43  Identities=9%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             CCCCCHhhHHHHHHhhcccCCc----chhhhhhcccccceeeehhhhh
Q 046732          220 RNAIPVRQRVAVCIWRLATGEP----LRLVSKRFGLGISTCHKLVLEV  263 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~G~s----~~~la~~Fgis~STvsrii~~v  263 (516)
                      +...+++.++.+ +.++..|.+    ...++..|||+.+|+.+.+...
T Consensus         3 r~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~   49 (59)
T 2glo_A            3 RRIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCE   49 (59)
T ss_dssp             CCCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred             CCcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence            457889999888 777888888    9999999999999998877553

>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*

Probab=90.19  E-value=0.15  Score=39.46  Aligned_cols=50  Identities=10%  Similarity=0.134  Sum_probs=42.7

Q ss_pred             CCCHhhHHHHHHhhc-c--cCCcchhhhhhcccccceeeehhhhhHHHHH-hhc
Q 046732          222 AIPVRQRVAVCIWRL-A--TGEPLRLVSKRFGLGISTCHKLVLEVCTAIR-SVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~L-a--~G~s~~~la~~Fgis~STvsrii~~v~~aL~-~~L  271 (516)
                      .+|+.++-.+.|+|+ .  .|.++..||..+|+|.+||...+.+....|. ..+
T Consensus        10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~   63 (73)
T 1ku3_A           10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHES   63 (73)
T ss_dssp             TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence            589999988888874 3  7899999999999999999999888887776 533

>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2

Probab=89.59  E-value=0.12  Score=41.71  Aligned_cols=50  Identities=12%  Similarity=0.188  Sum_probs=42.3

Q ss_pred             CCCHhhHHHHHHhh-cc--cCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          222 AIPVRQRVAVCIWR-LA--TGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~-La--~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      .+|+.++-.+.|+| |.  .|.++..||..+|+|.+||..++.+....|...+
T Consensus        18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l   70 (87)
T 1tty_A           18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS   70 (87)
T ss_dssp             TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred             hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            47888998888887 45  7899999999999999999998888877766543

>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19

Probab=89.59  E-value=0.13  Score=42.11  Aligned_cols=44  Identities=9%  Similarity=0.185  Sum_probs=37.3

Q ss_pred             CCCCCHhhHHHHHHhhccc-CCcchhhhhhcccccceeeehhhhh
Q 046732          220 RNAIPVRQRVAVCIWRLAT-GEPLRLVSKRFGLGISTCHKLVLEV  263 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~-G~s~~~la~~Fgis~STvsrii~~v  263 (516)
                      +...+++.++.++-.++.. |.+...++..||||.+|+++++...
T Consensus         3 r~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~   47 (97)
T 2jn6_A            3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY   47 (97)
T ss_dssp             CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence            3568889998888778877 9999999999999999998877554

>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*

Probab=89.46  E-value=0.18  Score=34.13  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=18.9

Q ss_pred             CChhHHHHHcCCCHHHHHHHH
Q 046732          185 YPEEEFKKWFRMRRQTFDMIC  205 (516)
Q Consensus       185 ~~d~~Fk~~FRmsk~tF~~L~  205 (516)
                      ++|++|...|+|+++.|..|-
T Consensus         1 Lsd~dF~~vFgmsr~eF~~LP   21 (35)
T 1wy3_A            1 LSDEDFKAVFGMTRSAFANLP   21 (35)
T ss_dssp             CCHHHHHHHHSSCHHHHHHSC
T ss_pred             CCHHHHHHHHCCCHHHHHHCc
Confidence            579999999999999998874

>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C

Probab=88.98  E-value=0.09  Score=37.07  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhh
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLE  262 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~  262 (516)
                      .++.++.. .++..+..|.+...++..+|||.+||++++..
T Consensus         5 ~~~~~~~~-~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~   44 (52)
T 1jko_C            5 AINKHEQE-QISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA   44 (52)
T ss_dssp             SSCTTHHH-HHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred             CCCHHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence            34444432 33334568899999999999999999887654

>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}

Probab=88.58  E-value=0.22  Score=37.70  Aligned_cols=49  Identities=16%  Similarity=0.096  Sum_probs=40.0

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      .+|+.++-.+.|+| ..|.++..+|..+|+|.+||.+.+.+....|...+
T Consensus        15 ~L~~~~r~il~l~~-~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l   63 (70)
T 2o8x_A           15 DLTTDQREALLLTQ-LLGLSYADAAAVCGCPVGTIRSRVARARDALLADA   63 (70)
T ss_dssp             SSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred             hCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence            47888887777765 47899999999999999999999888877776644

>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1

Probab=88.39  E-value=0.23  Score=34.00  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             CChhHHHHHcCCCHHHHHHHH
Q 046732          185 YPEEEFKKWFRMRRQTFDMIC  205 (516)
Q Consensus       185 ~~d~~Fk~~FRmsk~tF~~L~  205 (516)
                      ++|++|...|+|+++.|..|-
T Consensus         3 Lsd~dF~~vFgmsr~eF~~LP   23 (37)
T 1und_A            3 LSEQDFVSVFGITRGQFAALP   23 (37)
T ss_dssp             CCHHHHHHHHSSCHHHHHHSC
T ss_pred             CCHHHHHHHHCcCHHHHHHCh
Confidence            689999999999999998873

>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}

Probab=87.73  E-value=0.24  Score=40.14  Aligned_cols=49  Identities=14%  Similarity=0.159  Sum_probs=40.6

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      .+|+.++-++.|+| ..|.++..||..+|+|.+||...+.+....|...|
T Consensus        37 ~L~~~~r~vl~l~~-~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l   85 (92)
T 3hug_A           37 QLSAEHRAVIQRSY-YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL   85 (92)
T ss_dssp             TSCHHHHHHHHHHH-TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence            47888888777765 48899999999999999999998888877776644

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=87.48  E-value=0.12  Score=43.47  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=32.8

Q ss_pred             CCCHhhHHHHHHhh-----cccC-CcchhhhhhcccccceeeehhhhhHH
Q 046732          222 AIPVRQRVAVCIWR-----LATG-EPLRLVSKRFGLGISTCHKLVLEVCT  265 (516)
Q Consensus       222 ~l~~eekL~v~L~~-----La~G-~s~~~la~~Fgis~STvsrii~~v~~  265 (516)
                      -+++.++-++.++|     |..| .+|+.|+...|+|.|||+|+ .+.+.
T Consensus        35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~   83 (101)
T 1jhg_A           35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLK   83 (101)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHH
Confidence            36777776666644     3367 99999999999999999998 55443

>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B

Probab=85.01  E-value=0.4  Score=40.01  Aligned_cols=50  Identities=14%  Similarity=0.129  Sum_probs=42.9

Q ss_pred             CCCHhhHHHHHHhhc---ccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          222 AIPVRQRVAVCIWRL---ATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~L---a~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      .+|+.++-.+.|+|+   ..|.++..+|..+|+|.+||..+..+....|...+
T Consensus        19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~   71 (99)
T 3t72_q           19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS   71 (99)
T ss_pred             cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence            478999999999885   37899999999999999999999888877776643

>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}

Probab=82.79  E-value=0.42  Score=38.43  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=34.5

Q ss_pred             CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhH
Q 046732          220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVC  264 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~  264 (516)
                      +...+.+.+..+.-.+ ..|.+...++..||||.+|+++++.+.-
T Consensus        20 ~~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~   63 (87)
T 2elh_A           20 LRSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNED   63 (87)
T ss_dssp             CSSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3567888876655444 6889999999999999999988876543

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=82.59  E-value=1.7  Score=37.09  Aligned_cols=79  Identities=13%  Similarity=0.093  Sum_probs=52.7

Q ss_pred             CCChhHHHHHcCCCHHHHHHHHHHhhccccccCCCCCCCCCHhhHHHHHHhhcccCCcchhhhhhcc--cccceeeehhh
Q 046732          184 DYPEEEFKKWFRMRRQTFDMICEELNSVIAKEDTTLRNAIPVRQRVAVCIWRLATGEPLRLVSKRFG--LGISTCHKLVL  261 (516)
Q Consensus       184 ~~~d~~Fk~~FRmsk~tF~~L~~~L~~~i~k~~t~~r~~l~~eekL~v~L~~La~G~s~~~la~~Fg--is~STvsrii~  261 (516)
                      .++-.+.-..|++++.|+...+......-.....+....+++++...+.-.....+.+...|+..+|  +|.+||++++.
T Consensus        22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~  101 (141)
T 1u78_A           22 NVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIK  101 (141)
T ss_dssp             TCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence            4677888899999999998887765442211122233457776654333222234478899999998  78889888876


Q ss_pred             h
Q 046732          262 E  262 (516)
Q Consensus       262 ~  262 (516)
                      +
T Consensus       102 ~  102 (141)
T 1u78_A          102 R  102 (141)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2

Probab=81.51  E-value=0.7  Score=35.17  Aligned_cols=46  Identities=9%  Similarity=0.140  Sum_probs=37.5

Q ss_pred             CCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHH
Q 046732          221 NAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIR  268 (516)
Q Consensus       221 ~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~  268 (516)
                      ..+++.++-.+.+  +..|.++..+|..+|+|.+||...+......|.
T Consensus        10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~   55 (74)
T 1fse_A           10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKLG   55 (74)
T ss_dssp             CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence            4688888866666  378999999999999999999988877665554

>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A

Probab=80.59  E-value=0.74  Score=42.88  Aligned_cols=49  Identities=18%  Similarity=0.312  Sum_probs=42.6

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      .+|+.++-++.|+|+ .|.++..||..+|+|.+||...+.+....|...|
T Consensus       187 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l  235 (239)
T 1rp3_A          187 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML  235 (239)
T ss_dssp             TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            488999999888875 6899999999999999999999888887776654

>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A

Probab=80.51  E-value=0.59  Score=40.01  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=38.8

Q ss_pred             CCCCCHhhHHHHHHhhcccCCcch-hhhhhcccccceeeehhhhhHHH
Q 046732          220 RNAIPVRQRVAVCIWRLATGEPLR-LVSKRFGLGISTCHKLVLEVCTA  266 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~G~s~~-~la~~Fgis~STvsrii~~v~~a  266 (516)
                      +..++.+.++-++-.+..+|.+.. .++..|||+.+|+++++...-..
T Consensus         5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~   52 (131)
T 1hlv_A            5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAI   52 (131)
T ss_dssp             SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred             ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhh
Confidence            567999999988777667777765 99999999999999998875443

>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7

Probab=80.33  E-value=0.7  Score=40.85  Aligned_cols=48  Identities=13%  Similarity=0.182  Sum_probs=39.3

Q ss_pred             CCCCCCCHhhHHHHHHhh--cccCCcchhhhh----hc--ccccceeeehhhhhHH
Q 046732          218 TLRNAIPVRQRVAVCIWR--LATGEPLRLVSK----RF--GLGISTCHKLVLEVCT  265 (516)
Q Consensus       218 ~~r~~l~~eekL~v~L~~--La~G~s~~~la~----~F--gis~STvsrii~~v~~  265 (516)
                      ..|..++.++++.|+.++  -..+.+..+|+.    .|  +||+|||++++..=-.
T Consensus         7 ~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~   62 (144)
T 1iuf_A            7 IKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS   62 (144)
T ss_dssp             CSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred             CcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence            347789999999999988  335568889999    99  9999999999876433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	516
d1ijwc_	47	HIN recombinase (DNA-binding domain) {Synthetic}	94.85
d1hlva1	66	DNA-binding domain of centromere binding protein B	93.03
d1rp3a2	71	Sigma factor sigma-28 (FliA) {Aquifex aeolicus [Ta	91.86
d1or7a1	68	SigmaE factor (RpoE) {Escherichia coli [TaxId: 562	91.02
d1unda_	36	Advillin {Human (Homo sapiens) [TaxId: 9606]}	88.38
d1yu8x1	35	Villin {Chicken (Gallus gallus) [TaxId: 9031]}	87.9
d1s7oa_	106	Hypothetical protein SPy1201 {Streptococcus pyogen	86.55
d2jn6a1	89	Uncharacterized protein Cgl2762 {Corynebacterium g	83.19
d1xsva_	106	Hypothetical protein SAV1236 {Staphylococcus aureu	82.53

>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic

Probab=94.85  E-value=0.0029  Score=44.17  Aligned_cols=40  Identities=25%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             CCCCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehh
Q 046732          220 RNAIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLV  260 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii  260 (516)
                      ++.++. +++..+..+|+.|.+..+|+..||||++|+++++
T Consensus         3 ~~~lt~-~q~~~a~~l~~~G~s~~~iA~~~gVSr~TiYry~   42 (47)
T d1ijwc_           3 PRAINK-HEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYF   42 (47)
T ss_dssp             CCSSCH-HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred             CCcCCH-HHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHhhC
Confidence            345555 6778888899999999999999999999998875

>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Centromere-binding
domain: DNA-binding domain of centromere binding protein B (CENP-B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.015  Score=43.34  Aligned_cols=45  Identities=13%  Similarity=0.120  Sum_probs=36.4

Q ss_pred             CCCCCCHhhHHHHHHhhcccC-Ccchhhhhhcccccceeeehhhhh
Q 046732          219 LRNAIPVRQRVAVCIWRLATG-EPLRLVSKRFGLGISTCHKLVLEV  263 (516)
Q Consensus       219 ~r~~l~~eekL~v~L~~La~G-~s~~~la~~Fgis~STvsrii~~v  263 (516)
                      .|..|+..+++-+.-++-.++ .+..+||..|||+.|||+.|+..=
T Consensus         4 kRk~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK   49 (66)
T d1hlva1           4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNK   49 (66)
T ss_dssp             SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred             ccccCCHHHHHHHHHHHHcCCcchHHHHHHHhCCChhHHHHHHHHH
Confidence            467899999998866555544 478899999999999999887653

>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: Sigma factor sigma-28 (FliA)
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.86  E-value=0.038  Score=40.90  Aligned_cols=49  Identities=18%  Similarity=0.312  Sum_probs=42.2

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhc
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVL  271 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L  271 (516)
                      .+|+.++-++.|+|+ .|.++..+|..+|+|.+||...+.+....|...|
T Consensus        21 ~L~~~~r~v~~l~~~-~~~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~L   69 (71)
T d1rp3a2          21 KLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML   69 (71)
T ss_dssp             TSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh-HhCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHc
Confidence            488999988888776 7899999999999999999999988887776643

>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: SigmaE factor (RpoE)
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.052  Score=40.01  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=42.2

Q ss_pred             CCCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHhhcc
Q 046732          222 AIPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRSVLM  272 (516)
Q Consensus       222 ~l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~~L~  272 (516)
                      .+|+.++-++.|+|+ .|.++..+|..+|+|.+||...+.+....|...|.
T Consensus        18 ~Lp~~~r~v~~l~~~-~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~l~   67 (68)
T d1or7a1          18 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ   67 (68)
T ss_dssp             HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHH-hCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcC
Confidence            378889988888776 78889999999999999999998888877776554

>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Advillin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.11  Score=33.74  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             CChhHHHHHcCCCHHHHHHHH
Q 046732          185 YPEEEFKKWFRMRRQTFDMIC  205 (516)
Q Consensus       185 ~~d~~Fk~~FRmsk~tF~~L~  205 (516)
                      ++|++|...|+||++.|..|-
T Consensus         2 Lsd~dF~~vFgmsr~eF~~LP   22 (36)
T d1unda_           2 LSEQDFVSVFGITRGQFAALP   22 (36)
T ss_dssp             CCHHHHHHHHSSCHHHHHHSC
T ss_pred             CCHHHHHHHHCcCHHHHHHCc
Confidence            589999999999999998773

>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Villin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.90  E-value=0.094  Score=33.85  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             CChhHHHHHcCCCHHHHHHHH
Q 046732          185 YPEEEFKKWFRMRRQTFDMIC  205 (516)
Q Consensus       185 ~~d~~Fk~~FRmsk~tF~~L~  205 (516)
                      ++|++|...|+||++.|..|-
T Consensus         1 Lsd~dF~~vfgmsr~eF~~LP   21 (35)
T d1yu8x1           1 LSDEDFKAVFGMTRSAFANLP   21 (35)
T ss_dssp             SCHHHHHHHHSSCHHHHHTSC
T ss_pred             CCHHHHHHHHCCCHHHHHHCc
Confidence            578999999999999998763

>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: YlxM/p13-like
domain: Hypothetical protein SPy1201
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.55  E-value=0.13  Score=41.60  Aligned_cols=46  Identities=9%  Similarity=0.138  Sum_probs=40.9

Q ss_pred             CCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHh
Q 046732          223 IPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRS  269 (516)
Q Consensus       223 l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~  269 (516)
                      +|+.++-++.|+|+ .|.++..+|..+|||.+||+..+++....|..
T Consensus        17 Lp~~qR~v~~L~y~-~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~   62 (106)
T d1s7oa_          17 LTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILET   62 (106)
T ss_dssp             SCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            78889988888765 89999999999999999999999998887765

>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Cgl2762-like
domain: Uncharacterized protein Cgl2762
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=83.19  E-value=0.22  Score=38.55  Aligned_cols=44  Identities=9%  Similarity=0.185  Sum_probs=36.0

Q ss_pred             CCCCCHhhHHHHHHhhccc-CCcchhhhhhcccccceeeehhhhh
Q 046732          220 RNAIPVRQRVAVCIWRLAT-GEPLRLVSKRFGLGISTCHKLVLEV  263 (516)
Q Consensus       220 r~~l~~eekL~v~L~~La~-G~s~~~la~~Fgis~STvsrii~~v  263 (516)
                      +...|++-+.-++=.++.+ |.++..++..|||+.+|+++++.+.
T Consensus         3 rk~Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~~   47 (89)
T d2jn6a1           3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY   47 (89)
T ss_dssp             CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCcHHHHHHHHCCCHHHHHHHHHHH
Confidence            4467888888877566654 8999999999999999998887664

>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: YlxM/p13-like
domain: Hypothetical protein SAV1236
species: Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]

Probab=82.53  E-value=0.29  Score=39.41  Aligned_cols=46  Identities=11%  Similarity=0.164  Sum_probs=40.2

Q ss_pred             CCHhhHHHHHHhhcccCCcchhhhhhcccccceeeehhhhhHHHHHh
Q 046732          223 IPVRQRVAVCIWRLATGEPLRLVSKRFGLGISTCHKLVLEVCTAIRS  269 (516)
Q Consensus       223 l~~eekL~v~L~~La~G~s~~~la~~Fgis~STvsrii~~v~~aL~~  269 (516)
                      +|+.++-++.|+|+ .|.++..+|...|||.+||+..+++....|..
T Consensus        19 Lpe~QR~vl~L~~~-e~ls~~EIA~~lgiS~~aV~~~l~Ra~~~L~~   64 (106)
T d1xsva_          19 LTNKQRNYLELFYL-EDYSLSEIADTFNVSRQAVYDNIRRTGDLVED   64 (106)
T ss_dssp             SCHHHHHHHHHHHT-SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-hCCcHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            68888888877664 89999999999999999999999998887765