Citrus Sinensis ID: 046745

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR
Secondary Structure (PSIPRED)
cEEEEEcccEEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccEEEEEEEEccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHcccccHHHccHccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
vylpifmndhwVLGVVDILGGKISIYDSMIDLTNDSVLVrqllpvadmipLVLQKISyhetnpdcseviskipwpivrvrdipqqksggdcGAFLLRYLEVLAHeldvnsycqQDHVTQFRQALAVKLFGHR
Flexible Loop (DISEMBL)
VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR
Low Complexity Region (SEG)
VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR
Disordered region (IsUnstruct)
*YLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLF***
Disordered Region (DISOPRED)
VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR
Disordered Region (DISEMBL)
VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR
Disordered Region (DISPRO)
VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q94F30	489	Ubiquitin-like-specific p	no	no	0.795	0.214	0.311	4e-08
Q5RBB1	645	Sentrin-specific protease	yes	no	0.878	0.179	0.292	5e-07
Q9P0U3	644	Sentrin-specific protease	yes	no	0.878	0.180	0.292	5e-07
P59110	640	Sentrin-specific protease	yes	no	0.863	0.178	0.272	5e-07
O65278	341	Putative ubiquitin-like-s	no	no	0.772	0.299	0.278	2e-06
Q8GYL3	502	Ubiquitin-like-specific p	no	no	0.833	0.219	0.270	3e-06
Q09353	697	Sentrin-specific protease	yes	no	0.643	0.121	0.303	3e-05

>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 17/122 (13%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           +++PI    HW L V++    K+   DS             L  V  MI   L K    E
Sbjct: 371 IFVPIHRGVHWTLAVINNRESKLLYLDS-------------LNGVDPMILNALAKYMGDE 417

Query: 61  TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYC-QQDHVTQ 119
            N    + I    W +  V D+PQQK+G DCG F+L+Y++  +  L +   C  Q+H+  
Sbjct: 418 ANEKSGKKIDANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGL---CFSQEHMPY 474

Query: 120 FR 121
           FR
Sbjct: 475 FR 476

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)

Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++    E +
Sbjct: 527 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 581

Query: 63  PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
            +  ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct: 582 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 633

Query: 123 ALAVKLFGHR 132
            +  ++  HR
Sbjct: 634 RMVWEIL-HR 642

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)

Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++    E +
Sbjct: 526 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 580

Query: 63  PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
            +  ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct: 581 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 632

Query: 123 ALAVKLFGHR 132
            +  ++  HR
Sbjct: 633 RMVWEIL-HR 641

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 18/132 (13%)

Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++  +            +LQ +     +
Sbjct: 522 VPIHLGVHWCLAVVDFRRKSITYYDSMGGINNEACRI------------LLQYLKQESVD 569

Query: 63  PDCSEVISKIPWPIV--RVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQF 120
               E  +   W +   + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  F
Sbjct: 570 KKRKEFDTN-GWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYF 626

Query: 121 RQALAVKLFGHR 132
           R+ +  ++  HR
Sbjct: 627 RKRMVWEIL-HR 637

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis thaliana GN=ULP1B PE=5 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 13/115 (11%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           +++PI ++ HW LGV++    K    DS+      ++L      + D +    QK     
Sbjct: 222 IFVPIHIDIHWTLGVINNRERKFVYLDSLFTGVGHTILNAMAKYLVDEVKQKSQK----- 276

Query: 61  TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQD 115
            N D S       W +  V + PQQ++G DCG F+L+Y++  +  L +  + Q+D
Sbjct: 277 -NIDVS------SWGMEYVEERPQQQNGYDCGMFMLKYIDFYSRGLSL-QFSQKD 323

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana GN=ULP1A PE=2 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 23/133 (17%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           +++PI MN HW L V++I   K    DS                     P +L  ++ + 
Sbjct: 384 IFIPIHMNIHWTLAVINIKDQKFQYLDSF----------------KGREPKILDALARYF 427

Query: 61  TNP--DCSEVISKIP-WPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYC-QQDH 116
            +   D SEV   +  W    V+D+P Q++G DCG F+++Y++  +  LD+   C  Q+ 
Sbjct: 428 VDEVRDKSEVDLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYIDFYSRGLDL---CFTQEQ 484

Query: 117 VTQFRQALAVKLF 129
           +  FR   A ++ 
Sbjct: 485 MPYFRARTAKEIL 497

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, and very inefficiently of SUM3. Seems to be the only ULP1 able to cleave SUM3 precursors. Cleaves SUMO peptides better than SUMO-conjugated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2 SV=3

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 17/102 (16%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVL--VRQLLPVADMIPLVLQKISY 58
           V +P+ +  HW + V+D+   KI  YDS+ D  N +VL  +R  L          + +  
Sbjct: 576 VLVPVHLGMHWCMAVIDMGEKKIEFYDSLYD-GNTAVLPALRGYLEA--------ESLDK 626

Query: 59  HETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLE 100
            +T  + S       W I ++ DIP+Q++G DCG F  ++ E
Sbjct: 627 KKTAMNFSG------WTIQQMTDIPRQQNGSDCGVFSCQFGE 662

Protease that deconjugates smo-1 from targeted proteins and may catalyze the processing of smo-1 to its mature form.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
147778025	701	hypothetical protein VITISV_042738 [Viti	0.954	0.179	0.346	1e-13
449462703	418	PREDICTED: uncharacterized protein LOC10	0.954	0.301	0.323	5e-13
449509363	421	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.954	0.299	0.307	7e-13
46398240	423	Ulp1-like peptidase [Cucumis melo] gi|51	0.977	0.304	0.300	9e-13
449468674	314	PREDICTED: uncharacterized protein LOC10	0.969	0.407	0.310	3e-12
449437278	418	PREDICTED: uncharacterized protein LOC10	0.969	0.306	0.295	4e-10
147800488	183	hypothetical protein VITISV_011864 [Viti	0.886	0.639	0.315	1e-08
15242433	921	Ulp1 protease family protein [Arabidopsi	0.931	0.133	0.292	1e-08
7267288	1312	putative protein [Arabidopsis thaliana]	0.931	0.093	0.260	2e-08
297790001	699	hypothetical protein ARALYDRAFT_921059 [	0.727	0.137	0.348	5e-08

>gi|147778025|emb|CAN65286.1| hypothetical protein VITISV_042738 [Vitis vinifera]

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 77/130 (59%), Gaps = 4/130 (3%)

Query: 1   VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           VY+PI +   HWVLGVV +    I +YDS++ + N++ L   +  +A ++P +L  I+Y+
Sbjct: 568 VYVPINVRASHWVLGVVYLHRRIIYVYDSLMGINNNARLQVAIKALAKLLPHILNAIAYY 627

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
             + D    ++   W I R++DIPQQ++ GDCG F+++Y+E L H   + S      +  
Sbjct: 628 GFHGDTK--VNYQEWEIERLQDIPQQENDGDCGMFVMKYVEYLMHNHTLKSLTSA-RMDC 684

Query: 120 FRQALAVKLF 129
           F + +A +LF
Sbjct: 685 FWEKMAAELF 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462703|ref|XP_004149080.1| PREDICTED: uncharacterized protein LOC101212094 [Cucumis sativus]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 75/130 (57%), Gaps = 4/130 (3%)

Query: 1   VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           +Y P  ++ +HW+L  +D++  ++ ++DS+  LT+   +   L P+ +M+P +L    + 
Sbjct: 286 IYSPFNIHGNHWILLCLDLVRCQVKVWDSLPSLTSAEDMRSILEPIQEMVPNLLDATGFF 345

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
                 S    K PWP+V V  IP Q++  DCG F ++Y E  A  LDV + CQ++ ++ 
Sbjct: 346 VRRGGSS--THKEPWPLVIVDSIPLQRNNSDCGVFTIKYFEYEASGLDVATLCQEN-MSY 402

Query: 120 FRQALAVKLF 129
           FR+ LA +L+
Sbjct: 403 FRKQLAFQLW 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509363|ref|XP_004163567.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225160, partial [Cucumis sativus]

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 74/130 (56%), Gaps = 4/130 (3%)

Query: 1   VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           +Y P  ++ +HW+L  +D++  ++ ++DS+  LT+   +   L+P+ +M+P +L    + 
Sbjct: 289 IYSPFNIHGNHWILLCLDLVSCQVKVWDSLPSLTSAEDMRSILMPIREMVPNLLNTTEFF 348

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
                 S    K PWP+V V  IP  ++  DCG F ++Y E  A  LDV + CQ++ ++ 
Sbjct: 349 VRRGRSS--THKEPWPLVIVDSIPLXRNNSDCGVFTIKYFEYEASGLDVATLCQEN-MSY 405

Query: 120 FRQALAVKLF 129
           FR+ L  +L+
Sbjct: 406 FRKQLTFQLW 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46398240|gb|AAS91798.1| Ulp1-like peptidase [Cucumis melo] gi|51477401|gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 78/133 (58%), Gaps = 4/133 (3%)

Query: 1   VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           VY P  ++ +HWVL  +D++  ++ ++DS+  LT    +   LLP+  ++P +L    + 
Sbjct: 287 VYSPFNVHGNHWVLLCLDLVSCQVKVWDSLPSLTTAEEMTNILLPIRQLVPKLLDSTGFF 346

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
           +     S    K PWP+V V  IP Q++  DCG F ++Y E +A  + +++ CQ++ ++ 
Sbjct: 347 DRRGRSSTY--KEPWPVVIVDPIPLQRNNCDCGVFAIKYFEYIAAGVGLDTLCQEN-MSY 403

Query: 120 FRQALAVKLFGHR 132
           FR+ LA +++ ++
Sbjct: 404 FRKQLAFQVWTNQ 416

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468674|ref|XP_004152046.1| PREDICTED: uncharacterized protein LOC101216923 [Cucumis sativus]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 76/132 (57%), Gaps = 4/132 (3%)

Query: 1   VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           +Y P  ++ +HW+L  +D++  ++ ++DS+  LT+   +   L+ + +M+P +L    + 
Sbjct: 182 IYSPFNIHGNHWILLCLDLVRCQVKVWDSLPSLTSVEDMRSILMSIREMVPNLLDTTGFF 241

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
                 S    K PWP+V V  IP Q++  DCG F ++Y E  A  LDV + CQ++ ++ 
Sbjct: 242 VRRGGSS--THKEPWPLVIVDSIPLQRNNSDCGVFTIKYFEYEASGLDVATLCQEN-MSY 298

Query: 120 FRQALAVKLFGH 131
           FR+ LA +L+ +
Sbjct: 299 FRKQLAFQLWTN 310

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437278|ref|XP_004136419.1| PREDICTED: uncharacterized protein LOC101204276 [Cucumis sativus] gi|449442501|ref|XP_004139020.1| PREDICTED: uncharacterized protein LOC101209520 [Cucumis sativus] gi|449443700|ref|XP_004139615.1| PREDICTED: uncharacterized LOC101216800 [Cucumis sativus] gi|449443962|ref|XP_004139744.1| PREDICTED: uncharacterized protein LOC101211335 [Cucumis sativus] gi|449447675|ref|XP_004141593.1| PREDICTED: uncharacterized protein LOC101216800 [Cucumis sativus] gi|449449116|ref|XP_004142311.1| PREDICTED: uncharacterized protein LOC101215362 [Cucumis sativus] gi|449459746|ref|XP_004147607.1| PREDICTED: uncharacterized protein LOC101219741 [Cucumis sativus]

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 74/132 (56%), Gaps = 4/132 (3%)

Query: 1   VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           +Y P  ++ +HW+L  +D++  ++ ++DS+  LT+   +   L P+ +M+P +L    + 
Sbjct: 286 IYSPFNIHGNHWILLCLDLVRCQVKVWDSLPSLTSAEDMRSILEPIQEMVPNLLDATGFF 345

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
                 S    K PWP+V V  IP Q++  D G   ++Y E +A   DV + CQ++ ++ 
Sbjct: 346 VRRGGSS--THKEPWPLVIVDFIPLQQNNSDYGVVTIKYFEYVAASFDVVTLCQEN-MSY 402

Query: 120 FRQALAVKLFGH 131
           FR+ LA +L+ +
Sbjct: 403 FRKQLAFQLWTN 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800488|emb|CAN68582.1| hypothetical protein VITISV_011864 [Vitis vinifera]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 13/130 (10%)

Query: 1   VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           VY+PI +   HWVLGVV +    I +YDS++ + N++ L   + P+  ++P +L  I+Y+
Sbjct: 59  VYVPINVRVSHWVLGVVHLHRRIIYVYDSLMXINNNARLQVXIKPLTXLLPHILNAIAYY 118

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
             + D    ++   W I R+          DCG F+++Y+E L H   + S      +  
Sbjct: 119 GFHGDTK--VNYQEWEIERL---------DDCGMFVIKYVEYLMHNHPLKS-LTSARMDW 166

Query: 120 FRQALAVKLF 129
           FR+ +AV+LF
Sbjct: 167 FREKMAVELF 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242433|ref|NP_199370.1| Ulp1 protease family protein [Arabidopsis thaliana] gi|10177930|dbj|BAB11195.1| unnamed protein product [Arabidopsis thaliana] gi|332007886|gb|AED95269.1| Ulp1 protease family protein [Arabidopsis thaliana]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 7/130 (5%)

Query: 1   VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           +Y  +F+N +HWV   +D+   ++++YDS+  LT D+ +  Q + V  MIP +L      
Sbjct: 771 LYAYLFVNGNHWVALDIDLTNKRVNVYDSIPSLTTDTEMAIQCMFVMTMIPAMLSSFIPS 830

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
           +         SK+ W   R+  IP+    GDC  + ++Y+E LA     +  C ++ +  
Sbjct: 831 KQR---RRSYSKLEWK--RITKIPENLDPGDCAIYSIKYIECLALGKSFDGLCDEN-MQS 884

Query: 120 FRQALAVKLF 129
            R  LAV++F
Sbjct: 885 LRTKLAVEMF 894

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7267288|emb|CAB81070.1| putative protein [Arabidopsis thaliana]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 76/138 (55%), Gaps = 15/138 (10%)

Query: 1    VYLPI-FMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
            VY P+ + ++HWV   +++    I++YD++I  T +S +  ++ P+ +MIP +++ +   
Sbjct: 977  VYAPMNWKSEHWVALGINLNERLITVYDALISHTRESAVKARMTPICEMIPYLVRAM--- 1033

Query: 60   ETNPDCSEVI----SKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLA--HELDVNSYCQ 113
                 C +V+    S  P+  VR   + Q  + GDCG++ +++LE+LA  H     +  +
Sbjct: 1034 -----CQDVLISPYSVEPFEYVRCPTVAQNPTTGDCGSYTMKFLELLAFGHPFSELTTIR 1088

Query: 114  QDHVTQFRQALAVKLFGH 131
            +  +  +RQ  +V ++ H
Sbjct: 1089 EADMVFYRQKYSVDIYEH 1106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790001|ref|XP_002862916.1| hypothetical protein ARALYDRAFT_921059 [Arabidopsis lyrata subsp. lyrata] gi|297308689|gb|EFH39175.1| hypothetical protein ARALYDRAFT_921059 [Arabidopsis lyrata subsp. lyrata]

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 16/112 (14%)

Query: 1   VYLPI-FMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           VYLP+ +   HWV   VD+  G I I D   D T+   +V  + PVA M+P +L+ +   
Sbjct: 567 VYLPMNWGKRHWVALAVDLPRGHIDILDPFEDCTSARKVVSYMSPVAQMLPSLLRSV--- 623

Query: 60  ETNPDCSEVISKIPWPIV-----RVRDIPQQKSGGDCGAFLLRYLEVLAHEL 106
                C +V S   WP       R+ +I Q   GGDCG   L+++E+ +H+L
Sbjct: 624 -----CVDVPST--WPSTGFTFNRLPNITQNHRGGDCGPMCLKFIELHSHQL 668

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2157141	921	AT5G45570 [Arabidopsis thalian	0.931	0.133	0.292	1.4e-10
TAIR|locus:2115860	808	AT4G08430 [Arabidopsis thalian	0.931	0.152	0.292	2.8e-09
ZFIN|ZDB-GENE-060810-183	598	si:rp71-56k2.4 "si:rp71-56k2.4	0.886	0.195	0.276	2.2e-08
TAIR|locus:2130864	489	ESD4 "EARLY IN SHORT DAYS 4" [	0.848	0.229	0.302	5.5e-08
MGI|MGI:2445054	640	Senp1 "SUMO1/sentrin specific	0.878	0.181	0.315	6.4e-08
UNIPROTKB|H9L083	612	SENP1 "Uncharacterized protein	0.878	0.189	0.307	7.7e-08
UNIPROTKB|F1SGU9	628	SENP1 "Uncharacterized protein	0.878	0.184	0.3	8e-08
UNIPROTKB|Q9P0U3	644	SENP1 "Sentrin-specific protea	0.878	0.180	0.3	8.3e-08
UNIPROTKB|Q5RBB1	645	SENP1 "Sentrin-specific protea	0.878	0.179	0.3	8.3e-08
UNIPROTKB|F1PUE6	646	SENP1 "Uncharacterized protein	0.878	0.179	0.3	8.3e-08

TAIR|locus:2157141 AT5G45570 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 38/130 (29%), Positives = 67/130 (51%)

Query:     1 VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
             +Y  +F+N +HWV   +D+   ++++YDS+  LT D+ +  Q + V  MIP +L      
Sbjct:   771 LYAYLFVNGNHWVALDIDLTNKRVNVYDSIPSLTTDTEMAIQCMFVMTMIPAMLSSFIPS 830

Query:    60 ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
             +         SK+ W   R+  IP+    GDC  + ++Y+E LA     +  C ++ +  
Sbjct:   831 KQR---RRSYSKLEWK--RITKIPENLDPGDCAIYSIKYIECLALGKSFDGLCDEN-MQS 884

Query:   120 FRQALAVKLF 129
              R  LAV++F
Sbjct:   885 LRTKLAVEMF 894

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

TAIR|locus:2115860 AT4G08430 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 38/130 (29%), Positives = 68/130 (52%)

Query:     1 VYLPIFMN-DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
             +Y  +F+N +HWV   +D+   +I++YDS+  LT D+ +V Q + V  MIP +L      
Sbjct:   658 LYAYLFVNGNHWVALDIDLPKKRINVYDSIPSLTTDTEMVIQCMFVMTMIPAMLSSFIPS 717

Query:    60 ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
             +         SK+ W   R+  IP+     DC  + ++Y+E LA     +  C ++  + 
Sbjct:   718 KQR---RRSYSKLEWK--RITKIPENLDACDCAIYSIKYIECLALGKSFDGLCDENMQSL 772

Query:   120 FRQALAVKLF 129
             + + LAV++F
Sbjct:   773 WTK-LAVEMF 781

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

ZFIN|ZDB-GENE-060810-183 si:rp71-56k2.4 "si:rp71-56k2.4" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 37/134 (27%), Positives = 68/134 (50%)

Query:     1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
             + +P+ +  HW L VVD     +  YDSM    +D         + D+I L L++    +
Sbjct:   477 ILVPLHLGVHWSLAVVDFKSKSVRSYDSMGQRHDD---------ICDLILLYLKEEFKVK 527

Query:    61 TNPDCSEVISKIPWPIVRVR--DIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVT 118
                D    +SK  W +  +R  +IPQQK+G DCG F+ +Y + ++   ++    +Q+H+ 
Sbjct:   528 KGKDLD--VSK--WIVSSLRPSEIPQQKNGSDCGVFICKYADYISRGRNLTF--RQNHMP 581

Query:   119 QFRQALAVKLFGHR 132
              FR+A+  ++   +
Sbjct:   582 YFRKAMIWEILNQK 595

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 39/129 (30%), Positives = 60/129 (46%)

Query:     1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
             +++PI    HW L V++    K+   DS+    N          V  MI   L K    E
Sbjct:   371 IFVPIHRGVHWTLAVINNRESKLLYLDSL----NG---------VDPMILNALAKYMGDE 417

Query:    61 TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYC-QQDHVTQ 119
              N    + I    W +  V D+PQQK+G DCG F+L+Y++  +  L +   C  Q+H+  
Sbjct:   418 ANEKSGKKIDANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGL---CFSQEHMPY 474

Query:   120 FRQALAVKL 128
             FR   A ++
Sbjct:   475 FRLRTAKEI 483

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0016926 "protein desumoylation" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

MGI|MGI:2445054 Senp1 "SUMO1/sentrin specific peptidase 1" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 6.4e-08, P = 6.4e-08
 Identities = 41/130 (31%), Positives = 66/130 (50%)

Query:     3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
             +PI +  HW L VVD     I+ YDSM  + N++   R LL        V +K    +TN
Sbjct:   522 VPIHLGVHWCLAVVDFRRKSITYYDSMGGINNEAC--RILLQYLKQ-ESVDKKRKEFDTN 578

Query:    63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
                 ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct:   579 G--WQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 628

Query:   123 ALAVKLFGHR 132
              +  ++  HR
Sbjct:   629 RMVWEIL-HR 637

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IMP;IDA

GO:0016929 "SUMO-specific protease activity" evidence=IDA;IMP

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

UNIPROTKB|H9L083 SENP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 133 (51.9 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 40/130 (30%), Positives = 68/130 (52%)

Query:     3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
             +PI +  HW L VVD     I+ YDSM  + +++   R LL       L  ++  + +TN
Sbjct:   494 VPIHLGVHWCLAVVDFRKKTITYYDSMGGINSEAC--RILLQYLKQESLDKKRKEF-DTN 550

Query:    63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
                  ++SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct:   551 G--WSLLSK------KSQEIPQQMNGSDCGMFACKYADCITKDKPIN-FTQQ-HMPYFRK 600

Query:   123 ALAVKLFGHR 132
              +A ++  HR
Sbjct:   601 RMAWEIL-HR 609

GO:0006508 "proteolysis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1SGU9 SENP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 39/130 (30%), Positives = 67/130 (51%)

Query:     3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
             +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++  + +TN
Sbjct:   510 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEAC--RILLQYLKQESIDKKRKEF-DTN 566

Query:    63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
                 ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct:   567 G--WQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 616

Query:   123 ALAVKLFGHR 132
              +  ++  HR
Sbjct:   617 RMVWEIL-HR 625

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q9P0U3 SENP1 "Sentrin-specific protease 1" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 39/130 (30%), Positives = 67/130 (51%)

Query:     3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
             +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++  + +TN
Sbjct:   526 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEAC--RILLQYLKQESIDKKRKEF-DTN 582

Query:    63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
                 ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct:   583 G--WQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 632

Query:   123 ALAVKLFGHR 132
              +  ++  HR
Sbjct:   633 RMVWEIL-HR 641

GO:0006508 "proteolysis" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0097190 "apoptotic signaling pathway" evidence=IMP

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q5RBB1 SENP1 "Sentrin-specific protease 1" [Pongo abelii (taxid:9601)]

 Score = 133 (51.9 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 39/130 (30%), Positives = 67/130 (51%)

Query:     3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
             +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++  + +TN
Sbjct:   527 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEAC--RILLQYLKQESIDKKRKEF-DTN 583

Query:    63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
                 ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct:   584 G--WQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 633

Query:   123 ALAVKLFGHR 132
              +  ++  HR
Sbjct:   634 RMVWEIL-HR 642

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

UNIPROTKB|F1PUE6 SENP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 133 (51.9 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 39/130 (30%), Positives = 67/130 (51%)

Query:     3 LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
             +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++  + +TN
Sbjct:   528 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEAC--RILLQYLKQESIDKKRKEF-DTN 584

Query:    63 PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
                 ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct:   585 G--WQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 634

Query:   123 ALAVKLFGHR 132
              +  ++  HR
Sbjct:   635 RMVWEIL-HR 643

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!
3rd Layer	3.4.22.68	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	4e-24
PLN03189	490	PLN03189, PLN03189, Protease specific for SMALL UB	8e-10
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	3e-07

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 91.8 bits (228), Expect = 4e-24
 Identities = 38/130 (29%), Positives = 73/130 (56%), Gaps = 7/130 (5%)

Query: 1   VYLPIFMND-HWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           +Y+PI  +  HWVL ++++    I+I DS+I L  ++V  +++ P+ +M+P ++      
Sbjct: 86  IYIPINWDGKHWVLLIINLPKKTITILDSLISLHTEAV-KKRIRPIDNMLPYLMS----- 139

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
           E      +     P+ I R+  +PQQ + GDCG ++L+++E+LA  +          V +
Sbjct: 140 EALKKEQDDPDLTPFEIKRLTKVPQQPNSGDCGPYVLKFIELLAEGVPFEFLTADKDVDR 199

Query: 120 FRQALAVKLF 129
           FR+ LAV ++
Sbjct: 200 FRKKLAVDIY 209

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

 Score = 54.9 bits (132), Expect = 8e-10
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 17/122 (13%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           +++PI    HW L V++    K    DS             L      I   L K    E
Sbjct: 372 IFVPIHQEIHWTLAVINKKDQKFQYLDS-------------LKGRDPKILDALAKYYVDE 418

Query: 61  TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYC-QQDHVTQ 119
                 + I    W    V D+P+QK+G DCG F+++Y++  +  L +   C  Q+H+  
Sbjct: 419 VKDKSEKDIDVSSWEQEFVEDLPEQKNGYDCGMFMIKYIDFYSRGLGL---CFGQEHMPY 475

Query: 120 FR 121
           FR
Sbjct: 476 FR 477

Length = 490

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 19/129 (14%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           +++PI ++ HW L ++D     I  +DS+ + T+D VL              L+     E
Sbjct: 456 IFIPINISYHWFLAIIDNPKKNILYFDSLAN-THDPVLEF------------LRSYLLDE 502

Query: 61  TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQF 120
                     K P   ++   +PQQ++G DCG F+  ++       +      ++   + 
Sbjct: 503 Y----KIQHDKDPQIKMKHCKVPQQRNGSDCGVFVCMFIRYFLE--NPPEQFSKNDRPRA 556

Query: 121 RQALAVKLF 129
           R+ +A  + 
Sbjct: 557 RKNMAHTIK 565

Length = 578

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	100.0
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	100.0
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.95
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.94
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.78
PRK11836	403	deubiquitinase; Provisional	97.85
PRK14848	317	deubiquitinase SseL; Provisional	97.76
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	97.62
PF00770	183	Peptidase_C5: Adenovirus endoprotease; InterPro: I	97.58
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	97.32
PF03421	177	YopJ: YopJ Serine/Threonine acetyltransferase; Int	94.12
KOG4110	120	consensus NADH:ubiquinone oxidoreductase, NDUFS5/1	88.74
PRK15371	287	effector protein YopJ; Provisional	88.4
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	84.92

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=100.00  E-value=1.3e-34  Score=220.41  Aligned_cols=117  Identities=26%  Similarity=0.507  Sum_probs=97.7

Q ss_pred             CEEeeeeCCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCccccccc
Q 046745            1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVR   80 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   80 (132)
                      ||||||.+.||+|+|||++.++|.+||||++.. ..    +++.|++++...+.     ++.+   .+++.+.|+.....
T Consensus       372 IFIPIh~n~HWsLaVId~k~k~I~yyDSLgg~~-~~----vL~~L~rYL~~E~k-----dK~g---~d~D~s~W~~~~~~  438 (490)
T PLN03189        372 IFVPIHQEIHWTLAVINKKDQKFQYLDSLKGRD-PK----ILDALAKYYVDEVK-----DKSE---KDIDVSSWEQEFVE  438 (490)
T ss_pred             EEeeeecCCeeEEEEEEcCCCeEEEEeCCCCCC-HH----HHHHHHHHHHHHHh-----hhcC---CCcchhcceeccCC
Confidence            699999999999999999999999999999863 22    35556665544332     2222   24667889876567


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcCC
Q 046745           81 DIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR  132 (132)
Q Consensus        81 ~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~  132 (132)
                      ++|||.||+|||||||+||++++.|.++ .|+|+ ||+.||++|+.||+..|
T Consensus       439 ~vPQQ~NG~DCGVFVL~yAE~~SrG~~L-tFSQe-DMp~fRrRma~EIl~~r  488 (490)
T PLN03189        439 DLPEQKNGYDCGMFMIKYIDFYSRGLGL-CFGQE-HMPYFRLRTAKEILRLK  488 (490)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHcCCCCC-CcChh-hhHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999998 69999 99999999999999876

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.3e-35  Score=222.99  Aligned_cols=117  Identities=29%  Similarity=0.589  Sum_probs=99.3

Q ss_pred             CEEeeeeCCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCccccccc
Q 046745            1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVR   80 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   80 (132)
                      ||||||.+.||+|+|||+++++|.|||||++..+.     ++..|++    |+++++ .+++   +.+++.+.|.+....
T Consensus       393 i~vPIH~~vHW~l~vid~r~k~i~y~DS~~~~~nr-----~~~aL~~----Yl~~E~-~~k~---~~~~d~s~w~~~~~~  459 (511)
T KOG0778|consen  393 IFVPIHLGVHWCLAVIDLREKTIEYYDSLGGGPNR-----ICDALAK----YLQDES-RDKS---KKDFDVSGWTIEFVQ  459 (511)
T ss_pred             eEeeeecCceEEEEEEEcccceEEEeeccCCCCcc-----hHHHHHH----HHHHHH-hhhh---cCCCCccchhhhhhh
Confidence            79999999999999999999999999999975443     2344554    454443 2332   235788999998888


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcCC
Q 046745           81 DIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR  132 (132)
Q Consensus        81 ~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~  132 (132)
                      ++|||.||+|||+|+|+|+++++.|.|+ +|+|. +|++||++||.||++.|
T Consensus       460 ~iP~Q~Ng~DCG~f~c~~~~~~s~~~p~-~ftq~-dmp~fR~~m~~eI~~~~  509 (511)
T KOG0778|consen  460 NIPQQRNGSDCGMFVCKYADYISRDVPL-TFTQQ-DMPYFRKKMAKEILHLK  509 (511)
T ss_pred             ccccccCCCccceEEeeechhhccCCCc-ccChh-hhHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999 89999 99999999999999864

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.95  E-value=1.1e-27  Score=168.80  Aligned_cols=122  Identities=31%  Similarity=0.595  Sum_probs=85.6

Q ss_pred             CEEeeee-CCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcccccc
Q 046745            1 VYLPIFM-NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRV   79 (132)
Q Consensus         1 i~iPi~~-~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   79 (132)
                      |++|+|. ++||+|++|+++.++|.+|||+++..........+..+..++......     ..+.   ..+..+|.....
T Consensus        86 i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~---~~~~~~~~~~~~  157 (216)
T PF02902_consen   86 IFIPININNNHWVLLVIDLPKKRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKK-----KEGR---DPDKSPFKIVRP  157 (216)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHH-----HHSS---CT-TTTCEEEEE
T ss_pred             EEEEEechhhccceeEEcccccEEEEEeccccccccccchhhhhhhhhhhhhcccc-----cccc---ccccceeeeccc
Confidence            6899999 999999999999999999999998754122222333333333332211     1111   124467877667


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHhccCCCCC---CCcccchHHHHHHHHHHHhcC
Q 046745           80 RDIPQQKSGGDCGAFLLRYLEVLAHELDVNS---YCQQDHVTQFRQALAVKLFGH  131 (132)
Q Consensus        80 ~~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~---~~~~~~~~~~R~~l~~~l~~~  131 (132)
                      .++|||.|++|||+|||+||++++.|.+...   ++++ ++..+|++++.++.+.
T Consensus       158 ~~~pqQ~n~~dCGv~vl~~~~~~~~~~~~~~~~~l~~~-~i~~~r~~~a~~~~e~  211 (216)
T PF02902_consen  158 PNVPQQPNGYDCGVYVLKFMECLLEGPSFDFSQELTEE-DIKNFRKKLAVDLYEE  211 (216)
T ss_dssp             CTS-SSSSSSCHHHHHHHHHHHHHCTHHSTGCCSBTGH-HHHHHHHHHHH-----
T ss_pred             ccccCCCCCCCcHHHHHHHHHHHHhCCCCcccccCCHH-HHHHHHHHHHhhcccc
Confidence            7999999999999999999999999977643   7888 9999999999887653

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.5e-27  Score=180.55  Aligned_cols=112  Identities=21%  Similarity=0.456  Sum_probs=90.2

Q ss_pred             CEEeeeeCCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCccccccc
Q 046745            1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVR   80 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   80 (132)
                      ||||||...||+|++||.+...|.+||||++... .    ++    +++..|+.++ |...+       +.++|.....-
T Consensus       456 I~iPIni~~HW~l~II~~~~~~i~~~DSLan~~~-~----v~----~~L~~Y~ldE-~k~~~-------~k~~~~~~~~~  518 (578)
T COG5160         456 IFIPINISYHWFLAIIDNPKKNILYFDSLANTHD-P----VL----EFLRSYLLDE-YKIQH-------DKDPQIKMKHC  518 (578)
T ss_pred             EEEEecccceEEEEEeecCcceeEEecccccCcH-H----HH----HHHHHHHHHH-Hhccc-------CCchhhhhhcC
Confidence            7999999999999999999999999999998752 2    23    3334455433 22222       33456555567


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcC
Q 046745           81 DIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGH  131 (132)
Q Consensus        81 ~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~  131 (132)
                      ++|||.||+|||||||+|+++++.+.+. .|.+. +++++|+.|+++|++.
T Consensus       519 ~vPqQ~Ng~DCGV~vc~~~~~~~~~~p~-~f~~n-d~~r~Rk~m~h~i~~~  567 (578)
T COG5160         519 KVPQQRNGSDCGVFVCMFIRYFLENPPE-QFSKN-DRPRARKNMAHTIKDL  567 (578)
T ss_pred             CCCCCCCCCccceEEEEeeeecccCChh-hcCcc-chHHHHHHHHHHHHHH
Confidence            8999999999999999999999999886 89998 9999999999999764

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.78  E-value=1.5e-18  Score=120.22  Aligned_cols=104  Identities=30%  Similarity=0.367  Sum_probs=68.6

Q ss_pred             CEEeeeeC---------CeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCccc
Q 046745            1 VYLPIFMN---------DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISK   71 (132)
Q Consensus         1 i~iPi~~~---------~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~   71 (132)
                      ||+|||.+         +||+|+|+..++++.++|||+.+..... -+.+++++.    .++..      +         
T Consensus        91 iflpiNDn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n~nt~~-a~~l~~kl~----~ll~~------~---------  150 (223)
T KOG3246|consen   91 IFLPINDNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSNGNTKD-AKSLMKKLR----ALLKK------K---------  150 (223)
T ss_pred             EEEEecCCCcccccCCCcceEEEEEEeeCCcEEEeecccCCCcHH-HHHHHHHHH----HHHhh------h---------
Confidence            68999983         3999999999999999999999976543 233444433    33321      1         


Q ss_pred             CCccccc-ccCCCCCCCCCChhHHHHHHHHHHhccC---CCCCCCcccchHHHHHHHHHHH
Q 046745           72 IPWPIVR-VRDIPQQKSGGDCGAFLLRYLEVLAHEL---DVNSYCQQDHVTQFRQALAVKL  128 (132)
Q Consensus        72 ~~w~~~~-~~~~P~Q~n~~DCGvfvl~~~~~~~~~~---~~~~~~~~~~~~~~R~~l~~~l  128 (132)
                         ...+ ...+|||.||+|||+|||.+.+.++...   +..+-.+. ..+.+|.++-.+|
T Consensus       151 ---~~~~~~~~~~qQqNgyDCG~hV~~~t~~l~~~~~~~~~~~~~~~-~~~~~i~~lr~~l  207 (223)
T KOG3246|consen  151 ---FAKRVECKCLQQQNGYDCGLHVCCNTRVLAERLLRCPYATSSQL-LVVDLIKALREEL  207 (223)
T ss_pred             ---hhhcccccChhhhcCCchhHHHHHHHHHHHHHHhccccccccch-hhHHHHHHHHHHH
Confidence               1111 3578899999999999999987766432   23233344 4444554444443

>PRK11836 deubiquitinase; Provisional

Probab=97.85  E-value=0.00013  Score=53.71  Aligned_cols=95  Identities=21%  Similarity=0.325  Sum_probs=49.7

Q ss_pred             EEeeeeCCeeEEEEEe--------CCCCeEEEEeCCCCCCChH--HHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCccc
Q 046745            2 YLPIFMNDHWVLGVVD--------ILGGKISIYDSMIDLTNDS--VLVRQLLPVADMIPLVLQKISYHETNPDCSEVISK   71 (132)
Q Consensus         2 ~iPi~~~~HW~L~vi~--------~~~~~i~~~DSl~~~~~~~--~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~   71 (132)
                      ++|||.++||+|+++-        ..+.+..+|.|+.....+.  ..++++..+.   ..++-+++-...++.    ...
T Consensus       223 lFpINtg~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~l~~d~~~t~q~ii~a~~---~~~~~~~~~~~ik~~----~~e  295 (403)
T PRK11836        223 LFPINTGGHWILVSLQKIVNEKNNTQQIKCVIFNSLRALGHDKENSLKRVINSFN---SELMGEMSNNNIKVH----LTE  295 (403)
T ss_pred             EEEecCCCcEEEEEeHHhhhcccccceeEEEEEecHhhhccchhhHHHHHHHhhh---hhhhhhcchhhhccc----ccC
Confidence            6899999999999872        3456678899987654331  1222222211   111111110011111    111


Q ss_pred             CCcccccccCCCCCCCCCChhHHHHHHHHHHhcc
Q 046745           72 IPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHE  105 (132)
Q Consensus        72 ~~w~~~~~~~~P~Q~n~~DCGvfvl~~~~~~~~~  105 (132)
                      ..  +.+...--||.=...||.||++-+.-++..
T Consensus       296 ~e--i~fie~dLQq~vpngCGlFv~~a~Qe~i~q  327 (403)
T PRK11836        296 PE--IIFLHADLQQYLSQSCGAFVCMAAQEVIEQ  327 (403)
T ss_pred             Cc--eEEEechhhhcCCCccceehHHHHHHHHHH
Confidence            11  112222235555689999999888755444

>PRK14848 deubiquitinase SseL; Provisional

Probab=97.76  E-value=0.00026  Score=51.02  Aligned_cols=83  Identities=17%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             EEeeeeCCeeEEEEEe--CCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcccccc
Q 046745            2 YLPIFMNDHWVLGVVD--ILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRV   79 (132)
Q Consensus         2 ~iPi~~~~HW~L~vi~--~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   79 (132)
                      ++|||.++||+|+++-  ..+.+..+|.|+..... ...++++..       -.       ..+.+    ......  +.
T Consensus       192 vF~INtg~HWil~~~~Ki~~kiKC~iFNs~~~l~e-Ns~~~ii~~-------ak-------~ag~~----~e~di~--fI  250 (317)
T PRK14848        192 VFLINTGDHWLLCLFYKLAEKIKCLIFNTYYDLNE-NTKQEIIEA-------AK-------IAGIS----ENEDVN--FI  250 (317)
T ss_pred             EEEecCCCcEEEEEhHHhhhhceEEEeecHhhhhh-hHHHHHHHH-------HH-------hhCcc----cCCceE--Ee
Confidence            5899999999999863  23456678999886542 222222221       00       00111    001111  11


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHhcc
Q 046745           80 RDIPQQKSGGDCGAFLLRYLEVLAHE  105 (132)
Q Consensus        80 ~~~P~Q~n~~DCGvfvl~~~~~~~~~  105 (132)
                      ..--||.=...||.|||.+++.+...
T Consensus       251 e~nLQqnVpngCGlFv~~aIq~l~~~  276 (317)
T PRK14848        251 ETNLQNNVPNGCGLFCYHTIQLLSNA  276 (317)
T ss_pred             ehhhhhhCCCcchHHHHHHHHHHHhc
Confidence            12224555689999999999976544

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=3.9e-05  Score=62.02  Aligned_cols=41  Identities=27%  Similarity=0.631  Sum_probs=31.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHhccCCC------------CCCCcccchHHHHHHH
Q 046745           83 PQQKSGGDCGAFLLRYLEVLAHELDV------------NSYCQQDHVTQFRQAL  124 (132)
Q Consensus        83 P~Q~n~~DCGvfvl~~~~~~~~~~~~------------~~~~~~~~~~~~R~~l  124 (132)
                      |||.|..|||+|++.|++.+..+.+.            +.|.+. .+..+|..+
T Consensus       528 p~q~n~~dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~~~~~~-~~~~~r~~~  580 (595)
T KOG0779|consen  528 PQQNNDVDCGSFVLEFVERFIEDAPERFNIEDEGTINLEWFPPK-EILKFRDEI  580 (595)
T ss_pred             cCccCcccchhhHHHHHHHhhhChhhhcccccccccccccCCch-HHhhhhhhh
Confidence            89999999999999999999876553            235555 666666544

>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.58  E-value=0.00079  Score=45.87  Aligned_cols=82  Identities=20%  Similarity=0.277  Sum_probs=40.5

Q ss_pred             CeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHh-HHHHHHHHHHhhhccCCCCCCCCCcccCCcccccccCCCCCCC
Q 046745            9 DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLP-VADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKS   87 (132)
Q Consensus         9 ~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~-i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~P~Q~n   87 (132)
                      .||....-|++.++++.+|++|=+  +.++..+.+. ...    +++..+ .....++       =.+.+...+.-|=.+
T Consensus        34 vHWlA~Aw~P~s~t~YmFDPfGfs--d~~L~qiY~FeYe~----llrRSA-L~~~~dR-------Cv~LvkstqtVQ~p~   99 (183)
T PF00770_consen   34 VHWLAFAWDPRSRTFYMFDPFGFS--DQKLKQIYQFEYEG----LLRRSA-LSSTPDR-------CVTLVKSTQTVQCPC   99 (183)
T ss_dssp             S-EEEEEEETTTTEEEEE-TT-----HHHHHHHH----HH----HHHHHH-HHH-TTS-------EEEEEEE-EE-S-TT
T ss_pred             eeEEEEEecCCcceEEEeCCCCCC--HHHHHHHHhhhHHH----HHHHHh-hcCCCCc-------eEEEEeccceeeccC
Confidence            799999999999999999999964  3344333221 111    222111 0100111       012222223334558


Q ss_pred             CCChhHHHHHHHHHHhc
Q 046745           88 GGDCGAFLLRYLEVLAH  104 (132)
Q Consensus        88 ~~DCGvfvl~~~~~~~~  104 (132)
                      +.-||.|.|.|+.++..
T Consensus       100 SaaCGLFC~lFL~aF~~  116 (183)
T PF00770_consen  100 SAACGLFCCLFLHAFVH  116 (183)
T ss_dssp             ---HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHh
Confidence            99999999999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.32  E-value=0.001  Score=50.58  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             CEEeeeeCCeeEEEEEeCCCCeEEEEeCCCCC
Q 046745            1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDL   32 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~~~i~~~DSl~~~   32 (132)
                      +.+|++-..||..+++|-+++-+.+|||-|..
T Consensus       234 vmFgfcY~~Hwkc~IfDk~~~~v~FydSgG~~  265 (423)
T PF03290_consen  234 VMFGFCYMSHWKCCIFDKEKKIVYFYDSGGNI  265 (423)
T ss_pred             EEeeeeehhcceEEEEeccccEEEEEcCCCCC
Confidence            46789999999999999999999999999874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp

Probab=94.12  E-value=0.34  Score=33.53  Aligned_cols=26  Identities=35%  Similarity=0.525  Sum_probs=22.7

Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHhcc
Q 046745           80 RDIPQQKSGGDCGAFLLRYLEVLAHE  105 (132)
Q Consensus        80 ~~~P~Q~n~~DCGvfvl~~~~~~~~~  105 (132)
                      .+...|...+|||+|.|.++.....+
T Consensus       138 ie~diQkS~~dC~IFsLs~AkK~~~~  163 (177)
T PF03421_consen  138 IEMDIQKSPSDCGIFSLSLAKKMYKE  163 (177)
T ss_pred             EecccccCcCcchhhHHHHHHHHhhc
Confidence            47888999999999999999887654

causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.

>KOG4110 consensus NADH:ubiquinone oxidoreductase, NDUFS5/15kDa [Energy production and conversion]

Probab=88.74  E-value=0.46  Score=30.08  Aligned_cols=33  Identities=27%  Similarity=0.624  Sum_probs=26.8

Q ss_pred             cCCcccccccCCCCCCCCCChhHHHHHHHHHHh
Q 046745           71 KIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLA  103 (132)
Q Consensus        71 ~~~w~~~~~~~~P~Q~n~~DCGvfvl~~~~~~~  103 (132)
                      ...|.+.-...+|.-.-+.|||.|-..++||.-
T Consensus        16 ~~r~p~tds~~~p~~~q~r~cg~FE~e~~eC~e   48 (120)
T KOG4110|consen   16 IDRWPTTDSTEQPYKHQGRDCGKFEKEWMECAE   48 (120)
T ss_pred             hhhccccccccCccccccccccHHHHHHHHHHH
Confidence            356777555678888889999999999999963

>PRK15371 effector protein YopJ; Provisional

Probab=88.40  E-value=4.7  Score=30.11  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=21.3

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHhccC
Q 046745           81 DIPQQKSGGDCGAFLLRYLEVLAHEL  106 (132)
Q Consensus        81 ~~P~Q~n~~DCGvfvl~~~~~~~~~~  106 (132)
                      ..-.|.-.+|||+|.|.+|.......
T Consensus       162 e~d~QkS~~dC~mFSL~~AkK~~~e~  187 (287)
T PRK15371        162 EMDIQRSSSECGIFSLALAKKLYLER  187 (287)
T ss_pred             ecccccCcccchhhhHHHHHHHhhhh
Confidence            45679999999999999998776543

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=84.92  E-value=3.1  Score=36.38  Aligned_cols=25  Identities=16%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             CeeEEEEEeCCCCeEEEEeCCCCCCC
Q 046745            9 DHWVLGVVDILGGKISIYDSMIDLTN   34 (132)
Q Consensus         9 ~HW~L~vi~~~~~~i~~~DSl~~~~~   34 (132)
                      +||+.++ --+....+.||+||....
T Consensus        63 ghwimli-kg~gn~y~lfdplg~~sg   87 (1439)
T PF12252_consen   63 GHWIMLI-KGQGNQYYLFDPLGKTSG   87 (1439)
T ss_pred             ceeEEEE-EcCCCceEEecccccccc
Confidence            8999875 566778899999997643

There is little literature describing the family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
2xre_A	230	Detection Of Cobalt In Previously Unassigned Human		4e-08
2iyc_A	226	Senp1 Native Structure Length = 226		4e-08
2xph_A	238	Crystal Structure Of Human Senp1 With The Bound Cob		5e-08
2ckg_A	225	The Structure Of Senp1 Sumo-2 Co-Complex Suggests A		1e-07
2iy0_A	226	Senp1 (Mutant) Sumo1 Rangap Length = 226		5e-07
2g4d_A	205	Crystal Structure Of Human Senp1 Mutant (C603s) In		6e-07

>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++    E +
Sbjct: 112 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 166
Query: 63  PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
            +  ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct: 167 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 218
Query: 123 ALAVKLFGHR 132
            +  ++  HR
Sbjct: 219 RMVWEIL-HR 227

>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++    E +
Sbjct: 108 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 162
Query: 63  PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
            +  ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct: 163 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 214
Query: 123 ALAVKLFGHR 132
            +  ++  HR
Sbjct: 215 RMVWEIL-HR 223

>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++    E +
Sbjct: 120 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 174
Query: 63  PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
            +  ++ SK      + ++IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct: 175 TNGWQLFSK------KSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 226
Query: 123 ALAVKLFGHR 132
            +  ++  HR
Sbjct: 227 RMVWEIL-HR 235

>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++  +            +LQ +     +
Sbjct: 108 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRI------------LLQYLKQESID 155
Query: 63  PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
               E  +       +   IPQQ +G DCG F  +Y + +  +  +N + QQ H+  FR+
Sbjct: 156 KKRKEFDTNGWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 213
Query: 123 ALAVKLFGHR 132
            +  ++  HR
Sbjct: 214 RMVWEIL-HR 222

>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++    E +
Sbjct: 108 VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 162
Query: 63  PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
            +  ++ SK      + ++IPQQ +G D G F  +Y + +  +  +N + QQ H+  FR+
Sbjct: 163 TNGWQLFSK------KSQEIPQQMNGSDAGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 214
Query: 123 ALAVKLFGHR 132
            +  ++  HR
Sbjct: 215 RMVWEIL-HR 223

>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 3   LPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETN 62
           +PI +  HW L VVD     I+ YDSM  + N++   R LL       +  ++    E +
Sbjct: 87  VPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKR---KEFD 141
Query: 63  PDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQ 122
            +  ++ SK      + ++IPQQ +G D G F  +Y + +  +  +N + QQ H+  FR+
Sbjct: 142 TNGWQLFSK------KSQEIPQQMNGSDSGMFACKYADCITKDRPIN-FTQQ-HMPYFRK 193
Query: 123 ALAVKLFGHR 132
            +  ++  HR
Sbjct: 194 RMVWEIL-HR 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	1e-11
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	3e-09
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	1e-08
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	4e-08
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	3e-04

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 58.6 bits (141), Expect = 1e-11
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           + +PI +  HW L VVD     I+ YDSM  + N             ++   L++ S  +
Sbjct: 118 LLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINN---------EACRILLQYLKQESIDK 168

Query: 61  TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQF 120
              +     +       + ++IPQQ +G DCG F  +Y + +  +  +N + QQ  +  F
Sbjct: 169 KRKEFD--TNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPIN-FTQQH-MPYF 224

Query: 121 RQALAVKLFGHR 132
           R+ +  ++   +
Sbjct: 225 RKRMVWEILHRK 236

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 13/129 (10%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           + +PI    HW L V+D+    +   DSM        +   LL         LQ  S  +
Sbjct: 106 ILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQ--KGHRICEILLQY-------LQDESKTK 156

Query: 61  TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQF 120
            N D    + +     ++  +IPQQ +G DCG F  +Y + ++ +  +  + Q   +  F
Sbjct: 157 RNSDL--NLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPIT-FTQHQ-MPLF 212

Query: 121 RQALAVKLF 129
           R+ +  ++ 
Sbjct: 213 RKKMVWEIL 221

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 26/133 (19%), Positives = 38/133 (28%), Gaps = 32/133 (24%)

Query: 1   VYLPI-FMNDHWVLGVVDILGGKISI---YDSMIDLTNDSVLVRQLLPVADMIPLVLQKI 56
           V+LPI   N HW L VVD           YDSM         +  +              
Sbjct: 65  VFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQQRYLADMA------------- 111

Query: 57  SYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSY----- 111
                          + +       I  Q  G   G  +L  +EVLAH +   ++     
Sbjct: 112 ----------AYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGG 161

Query: 112 CQQDHVTQFRQAL 124
                +   R  +
Sbjct: 162 RDLTDIEPDRGLI 174

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 49.0 bits (116), Expect = 4e-08
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 18/129 (13%)

Query: 1   VYLPIFMND-HWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           ++ PI +N  HW LG++D+    I   DS+ +  N          ++  I   LQK    
Sbjct: 104 IFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPN---------AMSFAILTDLQKYVME 154

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
           E+     E    I        D PQQ +G DCG ++       + +  ++ +  +D   +
Sbjct: 155 ESKHTIGEDFDLIHL------DCPQQPNGYDCGIYVCMNTLYGSADAPLD-FDYKD-AIR 206

Query: 120 FRQALAVKL 128
            R+ +A  +
Sbjct: 207 MRRFIAHLI 215

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 19/127 (14%), Positives = 33/127 (25%), Gaps = 26/127 (20%)

Query: 4   PIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNP 63
                 HW L V          YDS     +                 V +K+       
Sbjct: 96  QAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSV------------HAKQVAEKLE------ 137

Query: 64  DCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAH------ELDVNSYCQQDHV 117
             + +  K           P Q++  DCG +++   E L           +       ++
Sbjct: 138 --AFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYI 195

Query: 118 TQFRQAL 124
           T+ R   
Sbjct: 196 TKKRGEW 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	100.0
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	100.0
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.97
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.95
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.93
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.92
4ekf_A	204	Adenain; alpha and beta protein (A+B), hydrolase;	97.74

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=100.00  E-value=2.7e-33  Score=198.88  Aligned_cols=117  Identities=21%  Similarity=0.426  Sum_probs=94.6

Q ss_pred             CEEeeeeCCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcccc--c
Q 046745            1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIV--R   78 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~   78 (132)
                      ||+|||.++||+|+|||+++++|.+||||++.. ..    ..+.+++++.....     ++.+.   .++.++|++.  .
T Consensus       106 i~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~-~~----~~~~l~~~l~~e~~-----~k~~~---~~~~~~w~~~~~~  172 (226)
T 1th0_A          106 ILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKG-HR----ICEILLQYLQDESK-----TKRNS---DLNLLEWTHHSMK  172 (226)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEECTTCCCC-HH----HHHHHHHHHHHHHH-----HHTSC---CCCGGGCEEEECC
T ss_pred             EEEeEEeCcEEEEEEEEcCCCceEEEcCCCCCc-hH----HHHHHHHHHHHHHH-----HhcCC---CCCcccceecccc
Confidence            689999999999999999999999999999864 22    23445554444322     22221   3456778863  2


Q ss_pred             ccCCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcCC
Q 046745           79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR  132 (132)
Q Consensus        79 ~~~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~  132 (132)
                      ..++|||.||+|||||||+||++++.|.++ +|+|+ +|+.+|++|+.||+++|
T Consensus       173 ~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~-~f~q~-dm~~~R~~~~~ei~~~~  224 (226)
T 1th0_A          173 PHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQH-QMPLFRKKMVWEILHQQ  224 (226)
T ss_dssp             TTTSCCCCSSSCHHHHHHHHHHHHTTTCCC-CCCGG-GHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhCCCCC-ccChh-hHHHHHHHHHHHHHhCC
Confidence            468999999999999999999999999988 79999 99999999999999986

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=100.00  E-value=5.6e-33  Score=198.61  Aligned_cols=117  Identities=26%  Similarity=0.550  Sum_probs=94.9

Q ss_pred             CEEeeeeCCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcccc--c
Q 046745            1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIV--R   78 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~   78 (132)
                      ||+|||.+.||+|++||+++++|.+||||++... .    .++.+++++...+.     ++.+.   .++..+|++.  .
T Consensus       118 i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~-~----~~~~l~~~L~~e~~-----~k~~~---~~~~~~w~~~~~~  184 (238)
T 2xph_A          118 LLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINN-E----ACRILLQYLKQESI-----DKKRK---EFDTNGWQLFSKK  184 (238)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEECTTCCCCH-H----HHHHHHHHHHHHHH-----HHHCS---CCCCTTCEEEECC
T ss_pred             EEEcccCCCceEEEEEEcccceEEEeecccCCCH-H----HHHHHHHHHHHHHH-----HhcCC---CcCcccceecccC
Confidence            6899999999999999999999999999998643 2    23444554444332     11121   3456788864  2


Q ss_pred             ccCCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcCC
Q 046745           79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR  132 (132)
Q Consensus        79 ~~~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~  132 (132)
                      ..++|||.||+|||||||+||++++.+.++ +|+|+ +|+.+|++|+.+|+++|
T Consensus       185 ~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~-~f~q~-dm~~~R~~m~~eil~~~  236 (238)
T 2xph_A          185 SQEIPQQMNGSDCGMFACKYADCITKDRPI-NFTQQ-HMPYFRKRMVWEILHRK  236 (238)
T ss_dssp             SSSSCCCSBGGGHHHHHHHHHHHHHTTCCC-CCCGG-GHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCCC-CcChh-hHHHHHHHHHHHHHhCC
Confidence            568999999999999999999999999987 79999 99999999999999986

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.97  E-value=1.6e-30  Score=184.07  Aligned_cols=115  Identities=21%  Similarity=0.355  Sum_probs=89.8

Q ss_pred             CEEeeee-CCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcccccc
Q 046745            1 VYLPIFM-NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRV   79 (132)
Q Consensus         1 i~iPi~~-~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   79 (132)
                      ||+|||. ++||+|++|++++++|.+||||++..+.. ...+++.+++    ++..+. .++.        ..+|++. .
T Consensus       104 i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-~~~i~~~l~~----~l~~e~-~~~~--------~~~~~~~-~  168 (221)
T 1euv_A          104 IFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAM-SFAILTDLQK----YVMEES-KHTI--------GEDFDLI-H  168 (221)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHH-HHHHHHHHHH----HHHHHT-TSSS--------CTTCEEE-E
T ss_pred             EEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcch-HHHHHHHHHH----HHHHHH-HHhc--------CCCceEe-e
Confidence            6899999 59999999999999999999999754432 1123444444    343222 1111        1346653 4


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcCC
Q 046745           80 RDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR  132 (132)
Q Consensus        80 ~~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~  132 (132)
                      .++|||.||+|||||||+||++++.|.++ +|+++ +|+.+|++|+.+|++++
T Consensus       169 ~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l-~f~~~-d~~~~R~~i~~~Il~~~  219 (221)
T 1euv_A          169 LDCPQQPNGYDCGIYVCMNTLYGSADAPL-DFDYK-DAIRMRRFIAHLILTDA  219 (221)
T ss_dssp             ECCCCCSSSSTHHHHHHHHHHHHHTTCCC-CCCHH-HHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHhCCCCC-CcCHH-HHHHHHHHHHHHHHhcc
Confidence            68999999999999999999999999998 79999 99999999999999874

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.95  E-value=3.5e-28  Score=171.01  Aligned_cols=109  Identities=21%  Similarity=0.219  Sum_probs=82.7

Q ss_pred             CEEeeee-------CCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCC
Q 046745            1 VYLPIFM-------NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIP   73 (132)
Q Consensus         1 i~iPi~~-------~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~   73 (132)
                      ||+|||.       ++||+|+||++++++|.+||||++.. ...    .+.+.+.|..++..      ..        .+
T Consensus        86 i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n-~~~----~~~l~~~l~~~l~~------~~--------~~  146 (212)
T 2bkr_A           86 VFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSN-SVH----AKQVAEKLEAFLGR------KG--------DK  146 (212)
T ss_dssp             EEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTT-HHH----HHHHHHHHHHHHSC------TT--------CC
T ss_pred             EEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCC-HHH----HHHHHHHHHHHhCC------cc--------cc
Confidence            6899994       79999999999999999999999864 332    23344444444421      11        12


Q ss_pred             cccccccCCCCCCCCCChhHHHHHHHHHHhccCC----C---CCCCcccchHHHHHHHHHHHhc
Q 046745           74 WPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELD----V---NSYCQQDHVTQFRQALAVKLFG  130 (132)
Q Consensus        74 w~~~~~~~~P~Q~n~~DCGvfvl~~~~~~~~~~~----~---~~~~~~~~~~~~R~~l~~~l~~  130 (132)
                      |++. ..++|||.||+|||||||+||++++.+..    +   ..|+++ +++.+|++|+..|.+
T Consensus       147 ~~~~-~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~R~~i~~lI~~  208 (212)
T 2bkr_A          147 LAFV-EEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPA-YITKKRGEWKDLIAT  208 (212)
T ss_dssp             CCEE-ECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHH-HHHHHHHHHHHHHHH
T ss_pred             ceEe-ECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHH-HHHHHHHHHHHHHHH
Confidence            4443 46899999999999999999999998751    1   257888 999999999988764

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.93  E-value=1.7e-26  Score=159.54  Aligned_cols=106  Identities=29%  Similarity=0.303  Sum_probs=76.4

Q ss_pred             CEEeeee-CCeeEEEEEeCCCCeE---EEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCccc
Q 046745            1 VYLPIFM-NDHWVLGVVDILGGKI---SIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPI   76 (132)
Q Consensus         1 i~iPi~~-~~HW~L~vi~~~~~~i---~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~   76 (132)
                      ||+|||. +.||+|+||+.+++++   .+||||++. +.. .    +.+++.+..++      +..        ..  ++
T Consensus        65 i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~~-~~~-~----~~l~~~l~~~l------~~~--------~~--~~  122 (186)
T 2oix_A           65 VFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQK-DPQ-Q----RYLADMAAYHL------GLD--------YQ--QT  122 (186)
T ss_dssp             EEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSSC-CHH-H----HHHHHHHHHHT------TCC--------GG--GC
T ss_pred             EEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCCC-CHH-H----HHHHHHHHHHh------CCC--------cc--cc
Confidence            6999999 7999999999999999   999999984 322 1    22333333332      111        01  12


Q ss_pred             ccccCCCCCCCCCChhHHHHHHHHHHhcc----C--CCCCCCcccchHHHHHHHHHHHhc
Q 046745           77 VRVRDIPQQKSGGDCGAFLLRYLEVLAHE----L--DVNSYCQQDHVTQFRQALAVKLFG  130 (132)
Q Consensus        77 ~~~~~~P~Q~n~~DCGvfvl~~~~~~~~~----~--~~~~~~~~~~~~~~R~~l~~~l~~  130 (132)
                       ...++|||.||+|||||||+||++++.+    .  .+..++.+ ++..+|+.|...|.+
T Consensus       123 -~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~-~i~~~R~~i~~lI~~  180 (186)
T 2oix_A          123 -HEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLT-DIEPDRGLIRDRLAQ  180 (186)
T ss_dssp             -EEECBCCCC--CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBT-TCCCCHHHHHHHHHC
T ss_pred             -ccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCccCCCcCCHH-HHHHHHHHHHHHHHh
Confidence             2468999999999999999999998854    1  23357788 999999999888764

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=159.15  Aligned_cols=117  Identities=20%  Similarity=0.360  Sum_probs=85.6

Q ss_pred             CEEeeeeCCeeEEEEEeCCC------------------------------------------------------------
Q 046745            1 VYLPIFMNDHWVLGVVDILG------------------------------------------------------------   20 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~------------------------------------------------------------   20 (132)
                      ||||||.+.||+|+||+++.                                                            
T Consensus       124 I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (323)
T 3eay_A          124 IFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMC  203 (323)
T ss_dssp             EEEEEEETTEEEEEEEECTTCSSCBCC-------------------------------------------------CCCC
T ss_pred             EEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence            69999999999999999864                                                            


Q ss_pred             --CeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcccccccCCCCCCCCCChhHHHHHH
Q 046745           21 --GKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRY   98 (132)
Q Consensus        21 --~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~P~Q~n~~DCGvfvl~~   98 (132)
                        .+|.+||||++.....    +++.++++|...+..     +++. ...++...|... .+.+|+|.|++|||+|||+|
T Consensus       204 k~pcIl~lDSL~~~~~~~----~~~~Lr~YL~~E~~~-----k~~~-~~~f~~~~~~~~-~~~~P~Q~N~~DCGvfvl~~  272 (323)
T 3eay_A          204 KRPCILILDSLKAASVQN----TVQNLREYLEVEWEV-----KLKT-HRQFSKTNMVDL-CPKVPKQDNSSDCGVYLLQY  272 (323)
T ss_dssp             BCSEEEEECSSCCSSHHH----HHHHHHHHHHHHHHH-----HHSS-CCCCCTTTSCEE-CCBCCCCCSTTCHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCcch----HHHHHHHHHHHHHHh-----hcCC-CcCCCHhHceec-cCCCCCcCCCCcHHHHHHHH
Confidence              2699999999864332    345566665555442     2111 123555667654 46799999999999999999


Q ss_pred             HHHHhccCCCC---------CCCcccchHHHHHHHHHHHh
Q 046745           99 LEVLAHELDVN---------SYCQQDHVTQFRQALAVKLF  129 (132)
Q Consensus        99 ~~~~~~~~~~~---------~~~~~~~~~~~R~~l~~~l~  129 (132)
                      |++++.+.+++         .|+.. .+...|..+..-|.
T Consensus       273 ~e~~~~~~~~~f~~~~~~~~wf~~~-~i~~kR~ei~~LI~  311 (323)
T 3eay_A          273 VESFFKDPIVNFELPIHLEKWFPRH-VIKTKREDIRELIL  311 (323)
T ss_dssp             HHHHHHSCCCCCCSSCBCTTSSCHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHhCCccccccccccccCCCHH-HHHHHHHHHHHHHH
Confidence            99999987642         35556 88888988876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	4e-12
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	3e-11
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	1e-08
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	0.001

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 4e-12
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 13/132 (9%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           + +PI +  HW L VVD     I+ YDSM  + N++              L+        
Sbjct: 106 LLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEAC-----------RILLQYLKQESI 154

Query: 61  TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQF 120
                    +       + ++IPQQ +G D G F  +Y + +  +  +N    Q H+  F
Sbjct: 155 DKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDRPINFT--QQHMPYF 212

Query: 121 RQALAVKLFGHR 132
           R+ +  ++   +
Sbjct: 213 RKRMVWEILHRK 224

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 3e-11
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 13/132 (9%)

Query: 1   VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHE 60
           + +PI    HW L V+D+    +   DSM    +          + +++   LQ  S  +
Sbjct: 106 ILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHR---------ICEILLQYLQDESKTK 156

Query: 61  TNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQF 120
            N D +  + +     ++  +IPQQ +G DCG F  +Y + ++ +  +     Q  +  F
Sbjct: 157 RNSDLN--LLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITF--TQHQMPLF 212

Query: 121 RQALAVKLFGHR 132
           R+ +  ++   +
Sbjct: 213 RKKMVWEILHQQ 224

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 18/129 (13%)

Query: 1   VYLPI-FMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYH 59
           ++ PI     HW LG++D+    I   DS+ +  N          ++  I   LQK    
Sbjct: 104 IFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPN---------AMSFAILTDLQKYVME 154

Query: 60  ETNPDCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQ 119
           E+     E    I          PQQ +G DCG ++       + +  ++ +  +D   +
Sbjct: 155 ESKHTIGEDFDLIHLDC------PQQPNGYDCGIYVCMNTLYGSADAPLD-FDYKD-AIR 206

Query: 120 FRQALAVKL 128
            R+ +A  +
Sbjct: 207 MRRFIAHLI 215

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 26/128 (20%)

Query: 4   PIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNP 63
                 HW L V          YDS    +N     +           V +K+       
Sbjct: 96  QAAGGSHWSLLVYLQDKNSFFHYDSHSR-SNSVHAKQ-----------VAEKLE------ 137

Query: 64  DCSEVISKIPWPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQ------QDHV 117
             + +  K           P Q++  DCG +++   E L                   ++
Sbjct: 138 --AFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYI 195

Query: 118 TQFRQALA 125
           T+ R    
Sbjct: 196 TKKRGEWK 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.97
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.97
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.97
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.91
d1nlna_	203	Human adenovirus 2 proteinase, adenain {Mastadenov	97.64

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=186.46  Aligned_cols=117  Identities=25%  Similarity=0.512  Sum_probs=91.3

Q ss_pred             CEEeeeeCCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcccc--c
Q 046745            1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIV--R   78 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~--~   78 (132)
                      ||+|+|.+.||+|++|+++.++|.+|||+++... ....    .+.+.+...+....  .      ..++...|+..  .
T Consensus       106 I~iPin~~~HW~l~vi~~~~~~i~~~DSl~~~~~-~~~~----~i~~~l~~~~~~~~--~------~~~~~~~~~~~~~~  172 (225)
T d2iy1a1         106 LLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINN-EACR----ILLQYLKQESIDKK--R------KEFDTNGWQLFSKK  172 (225)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEECTTCCCCH-HHHH----HHHHHHHHHHHHHH--S------SCCCCTTCEEEECC
T ss_pred             EEEEEeCCCCEEEEEEEeccceEEEEecCCCCch-HHHH----HHHHHHHHHHHHhc--c------CccCcccceecccc
Confidence            6899999999999999999999999999998653 3322    23333333332111  1      11344566642  3


Q ss_pred             ccCCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcCC
Q 046745           79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR  132 (132)
Q Consensus        79 ~~~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~  132 (132)
                      +.++|||.||+|||+|||+||++++.|.++ +|+++ +|+.+|++||.+|+++|
T Consensus       173 ~~~~pqQ~Ng~DCGvfvl~~~~~~~~~~~~-~~~q~-~~~~~R~~~~~~l~~~~  224 (225)
T d2iy1a1         173 SQEIPQQMNGSDAGMFACKYADCITKDRPI-NFTQQ-HMPYFRKRMVWEILHRK  224 (225)
T ss_dssp             TTTSCCCCSSSTHHHHHHHHHHHHHTTCCC-CCCGG-GHHHHHHHHHHHHHTTC
T ss_pred             cccCCCCCCCCChHHHHHHHHHHHhCCCCC-CcCHH-HHHHHHHHHHHHHHhCc
Confidence            568999999999999999999999999887 79999 99999999999999986

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.9e-31  Score=184.26  Aligned_cols=117  Identities=21%  Similarity=0.452  Sum_probs=90.5

Q ss_pred             CEEeeeeCCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcc--ccc
Q 046745            1 VYLPIFMNDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWP--IVR   78 (132)
Q Consensus         1 i~iPi~~~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~--~~~   78 (132)
                      ||+|+|.++||+|++|+++++++.+|||+++... ..    .+.+.+++...+....  .   .   ......|.  ...
T Consensus       106 i~iPin~~~HW~L~vi~~~~~~i~~~DSl~~~~~-~~----~~~i~~~l~~~~~~~~--~---~---~~~~~~~~~~~~~  172 (226)
T d1th0a_         106 ILVPIHRKVHWSLVVIDLRKKCLKYLDSMGQKGH-RI----CEILLQYLQDESKTKR--N---S---DLNLLEWTHHSMK  172 (226)
T ss_dssp             EEEEEEETTEEEEEEEETTTTEEEEECTTCCCCH-HH----HHHHHHHHHHHHHHHT--S---C---CCCGGGCEEEECC
T ss_pred             EEEeEEcCCceEEEEEEeccceEEEeccccCCCh-HH----HHHHHHHHHHHHHHhh--C---C---CcCcccceeeeec
Confidence            6899999999999999999999999999998643 32    3334444444333211  1   1   11223343  234


Q ss_pred             ccCCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcCC
Q 046745           79 VRDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR  132 (132)
Q Consensus        79 ~~~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~  132 (132)
                      +.++|||.||+|||+|||+||++++.|.++ +|++. +|+.+|++|+.+|+++|
T Consensus       173 ~~~~pqQ~N~~DCGvfvl~~~~~~~~~~~~-~~tq~-di~~~R~~i~~el~~~~  224 (226)
T d1th0a_         173 PHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQH-QMPLFRKKMVWEILHQQ  224 (226)
T ss_dssp             TTTSCCCCSSSCHHHHHHHHHHHHTTTCCC-CCCGG-GHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHhCCCCC-CcCHH-HHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999887 79999 99999999999999876

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-30  Score=182.99  Aligned_cols=115  Identities=21%  Similarity=0.369  Sum_probs=90.1

Q ss_pred             CEEeeee-CCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCCcccccc
Q 046745            1 VYLPIFM-NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIPWPIVRV   79 (132)
Q Consensus         1 i~iPi~~-~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   79 (132)
                      ||||||. ++||+|++||++.++|.+||||++..+. ....+++.++++    +..+. ..+        ....|+.. .
T Consensus       104 i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~-~~~~i~~~l~~~----l~~~~-~~~--------~~~~~~~~-~  168 (221)
T d1euva_         104 IFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNA-MSFAILTDLQKY----VMEES-KHT--------IGEDFDLI-H  168 (221)
T ss_dssp             EEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCH-HHHHHHHHHHHH----HHHHT-TSS--------SCTTCEEE-E
T ss_pred             eEeeEecccceEEEEEeeccccceeeeccccCCCcH-HHHHHHHHHHHH----HHHHH-Hhh--------cCCCCeee-e
Confidence            5899998 6899999999999999999999987553 333344444443    32222 111        11346553 4


Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHhccCCCCCCCcccchHHHHHHHHHHHhcCC
Q 046745           80 RDIPQQKSGGDCGAFLLRYLEVLAHELDVNSYCQQDHVTQFRQALAVKLFGHR  132 (132)
Q Consensus        80 ~~~P~Q~n~~DCGvfvl~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~  132 (132)
                      .++|||.||+|||+|||+||++++.|.++ +|+|+ +|+++|+.++.+|++++
T Consensus       169 ~~~PqQ~N~~DCGvfvl~~~~~~~~~~~~-~~~q~-d~~~~R~~i~~~il~~~  219 (221)
T d1euva_         169 LDCPQQPNGYDCGIYVCMNTLYGSADAPL-DFDYK-DAIRMRRFIAHLILTDA  219 (221)
T ss_dssp             ECCCCCSSSSTHHHHHHHHHHHHHTTCCC-CCCHH-HHHHHHHHHHHHHHTTT
T ss_pred             ccCCCCCCCCChHHHHHHHHHHHhCCCCC-ccCHH-HHHHHHHHHHHHHHHhh
Confidence            58999999999999999999999999988 79999 99999999999999864

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.3e-25  Score=152.39  Aligned_cols=109  Identities=21%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             CEEeeeeC-------CeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHhHHHHHHHHHHhhhccCCCCCCCCCcccCC
Q 046745            1 VYLPIFMN-------DHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLPVADMIPLVLQKISYHETNPDCSEVISKIP   73 (132)
Q Consensus         1 i~iPi~~~-------~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~   73 (132)
                      ||+|||.+       +||+|++|+++.+++.+|||+++... ...+    .+.+.+..++.      ..+        ..
T Consensus        86 ifiPIn~~~~~~~~g~HW~l~vi~~~~~~i~~~DSl~~~~~-~~~~----~~~~~l~~~~~------~~~--------~~  146 (212)
T d2bkra1          86 VFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNS-VHAK----QVAEKLEAFLG------RKG--------DK  146 (212)
T ss_dssp             EEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTH-HHHH----HHHHHHHHHHS------CTT--------CC
T ss_pred             EEEecccccccccCcceeeeeeeccccceEEEecCCCcCCH-HHHH----HHHHHHHHHhc------ccc--------Cc
Confidence            58999953       79999999999999999999998643 3322    33333333331      111        12


Q ss_pred             cccccccCCCCCCCCCChhHHHHHHHHHHhccCC----C---CCCCcccchHHHHHHHHHHHhc
Q 046745           74 WPIVRVRDIPQQKSGGDCGAFLLRYLEVLAHELD----V---NSYCQQDHVTQFRQALAVKLFG  130 (132)
Q Consensus        74 w~~~~~~~~P~Q~n~~DCGvfvl~~~~~~~~~~~----~---~~~~~~~~~~~~R~~l~~~l~~  130 (132)
                      +.+ ....+|||.||+|||+|||+||++++.+..    .   ..++++ ++..+|+.|...|+.
T Consensus       147 ~~~-~~~~~p~Q~N~~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~R~~l~~lI~~  208 (212)
T d2bkra1         147 LAF-VEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPA-YITKKRGEWKDLIAT  208 (212)
T ss_dssp             CCE-EECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHH-HHHHHHHHHHHHHHH
T ss_pred             eee-eecccCCCCCCCChHHHHHHHHHHHHHhcccccchhhhhcCCHH-HHHHHHHHHHHHHHH
Confidence            333 246899999999999999999999975431    1   135777 999999999877653

>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Human adenovirus 2 proteinase, adenain
species: Mastadenovirus H2 [TaxId: 10515]

Probab=97.64  E-value=0.00016  Score=47.41  Aligned_cols=84  Identities=15%  Similarity=0.213  Sum_probs=50.0

Q ss_pred             CCeeEEEEEeCCCCeEEEEeCCCCCCChHHHHHHHHh-HHHHHHHHHHhhhccCCCCCCCCCcccCCcccccccCCCCCC
Q 046745            8 NDHWVLGVVDILGGKISIYDSMIDLTNDSVLVRQLLP-VADMIPLVLQKISYHETNPDCSEVISKIPWPIVRVRDIPQQK   86 (132)
Q Consensus         8 ~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~-i~~~i~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~P~Q~   86 (132)
                      |.||....-|+..++++.+|++|=+  +.++..+.+. ...+    ++..+ .....++       =.+.+...+.-|=.
T Consensus        51 G~HWlA~Aw~P~s~t~Y~FDPfGfs--d~~L~q~Y~FeY~~l----lkRSA-L~~spdR-------Cvtlvkstq~VQcp  116 (203)
T d1nlna_          51 GVHWMAFAWNPRSKTCYLFEPFGFS--DQRLKQVYQFEYESL----LRRSA-IASSPDR-------CITLEKSTQSVQGP  116 (203)
T ss_dssp             CCCEEEEEEETTTTEEEEECTTCCC--HHHHHHHHCCCCHHH----HHHHH-HHHCTTS-------EEEEEEECEECSCT
T ss_pred             ceeeEEeEecCCcCeEEEECCCCCC--HHHHHHHhhhhHHHH----HHHHh-hcCCCCc-------eEEEEeccceecCC
Confidence            3799999999999999999999964  3333332221 0111    11111 0001111       01222222333556


Q ss_pred             CCCChhHHHHHHHHHHhcc
Q 046745           87 SGGDCGAFLLRYLEVLAHE  105 (132)
Q Consensus        87 n~~DCGvfvl~~~~~~~~~  105 (132)
                      ++.-||.|.+.|+.++..-
T Consensus       117 ~SaaCGLFC~lFL~aF~~~  135 (203)
T d1nlna_         117 NSAACGLFCCMFLHAFANW  135 (203)
T ss_dssp             TCCCHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHhC
Confidence            8899999999999998753