Citrus Sinensis ID: 046778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVFHR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcEEEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEEEEEHHHHcc
Coil and Loop (DISEMBL)
MIESLDLSrnklsgrippqltelnfLSNFNVsynnlsgpipdkeqfatfddrsykgnsaLCGSMIkrkcssalappatptgggedegdsVIDMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVFHR
Flexible Loop (DISEMBL)
miesldlsrnklsgrippqltelNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKCSSAlappatptgggedegDSVIDMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVFHR
Low Complexity Region (SEG)
MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVFHR
Disordered region (IsUnstruct)
*******************LTELNFLSNFNVSYNNLSG********ATF*********ALCG***************************VIDMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVF**
Disordered Region (DISOPRED)
MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIK*************************DMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVFHR
Disordered Region (DISEMBL)
MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKCSS**************EGDSVIDMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVFHR
Disordered Region (DISPRO)
MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKC*******************SVIDMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVFHR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINSYWRRLWFYFIDRCIDTCYYWLFKYVFHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.680	0.097	0.423	3e-15
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.680	0.137	0.398	4e-14
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.455	0.061	0.558	1e-13
C0LGP9	784	Probable leucine-rich rep	no	no	0.476	0.089	0.478	4e-12
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.551	0.080	0.482	1e-11
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.741	0.093	0.378	3e-11
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.789	0.112	0.352	4e-11
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.414	0.058	0.476	1e-10
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.428	0.052	0.492	4e-10
C0LGE4	882	Probable LRR receptor-lik	no	no	0.476	0.079	0.471	4e-10

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           +E LDLS N LSG IPP L +L+FLS F+V+YN LSGPIP   QF TF + S++GN  LC
Sbjct: 583 LEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLC 642

Query: 62  GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYV 105
           G       S       +P G       ++  +VA+    G   V
Sbjct: 643 G----EHASPCHITDQSPHGSAVKSKKNIRKIVAVAVGTGLGTV 682

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.
Daucus carota (taxid: 4039)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 8/108 (7%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           +E LDLS N LSG IP  LT LNFLS FNV+ N+L GPIP + QF TF   +++GN  LC
Sbjct: 626 LERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLC 685

Query: 62  GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVIL 109
           G ++   C         PT   E++  +   ++ +   +  S+VS+++
Sbjct: 686 GGVLLTSCK--------PTRAKENDELNRTFLMGIAIGYFLSFVSILV 725

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 46/68 (67%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           +E LDLS N LSGRIP  LT L+FLS FNV+ N LSGPIP   QF TF   +++GN  LC
Sbjct: 631 LERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLC 690

Query: 62  GSMIKRKC 69
           G ++   C
Sbjct: 691 GGVLLTSC 698

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64
           LDLS+NKL+G IP  +++L  L+ FNVSYNNLSGP+P       F+  S+ GNS LCG  
Sbjct: 323 LDLSQNKLTGEIPISISDLESLNFFNVSYNNLSGPVPTLLS-QKFNSSSFVGNSLLCGYS 381

Query: 65  IKRKCSSALAP 75
           +   C +  +P
Sbjct: 382 VSTPCPTLPSP 392

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 6/87 (6%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           +E+LDLS N+LSG IP  L +L+FLS F+V+YNNLSG IP   QF TF + S++ N  LC
Sbjct: 573 LEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESNH-LC 631

Query: 62  GSMIKRKCS----SALAPPATPTGGGE 84
           G   +  CS    SAL   +  + GG+
Sbjct: 632 GEH-RFPCSEGTESALIKRSRRSRGGD 657

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           I  LDLS N L G +P  L  L+FLS+ +VS NNL+GPIP   Q  TF    Y  NS LC
Sbjct: 689 IGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLC 748

Query: 62  GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLF 112
           G  + R C SA   P T     + +  +   +  + +SF   +V +++ L+
Sbjct: 749 GVPL-RPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSF-MCFVMLVMALY 797

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 6/122 (4%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSAL 60
           M+  LDLS N L+G IP  L     L   NVS+N L GPIP    FA  D +   GN+ L
Sbjct: 557 MLAVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGL 616

Query: 61  CGSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLF-AALWINS 119
           CG ++   CS +LA  A     G + G   ++     +  G S +  +  +F A  WI +
Sbjct: 617 CGGVLP-PCSKSLALSAK----GRNPGRIHVNHAVFGFIVGTSVIVAMGMMFLAGRWIYT 671

Query: 120 YW 121
            W
Sbjct: 672 RW 673

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           +E LDLS N LSG+IPP   ++  L++ +VS+NNL GPIPD   F      +++GN  LC
Sbjct: 624 LERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLC 683

Query: 62  GSM 64
           GS+
Sbjct: 684 GSV 686

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 39/63 (61%)

Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64
           LDLS NKL GRIP  ++ L  L+  ++S NNLSGPIP+  QF TF    +  N  LCG  
Sbjct: 707 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 766

Query: 65  IKR 67
           + R
Sbjct: 767 LPR 769

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 42/70 (60%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           ++ LDLS+N LSG IP  L  LN L++FNVSYNNLSG IP       F   ++  N  LC
Sbjct: 430 VQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGSSAFSNNPFLC 489

Query: 62  GSMIKRKCSS 71
           G  +   C+S
Sbjct: 490 GDPLVTPCNS 499

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.952	0.131	0.535	5e-37
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.952	0.122	0.528	1e-35
297743502	893	unnamed protein product [Vitis vinifera]	0.952	0.156	0.528	2e-35
224115344	552	predicted protein [Populus trichocarpa]	0.931	0.248	0.567	6e-35
359482735	1097	PREDICTED: receptor-like protein 12-like	0.952	0.127	0.521	8e-35
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.952	0.136	0.507	4e-34
224124498	650	predicted protein [Populus trichocarpa]	0.931	0.210	0.560	5e-34
297743521	518	unnamed protein product [Vitis vinifera]	0.952	0.270	0.514	9e-34
359482757	1027	PREDICTED: LRR receptor-like serine/thre	0.945	0.135	0.510	1e-33
224124502	452	predicted protein [Populus trichocarpa]	0.931	0.303	0.546	5e-33

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 100/142 (70%), Gaps = 2/142 (1%)

Query: 2    IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
            IESLDLS NKLSG IP +L ELNFL  F+V+YNN+SG +PD K QF TFD+RSY+GN  L
Sbjct: 914  IESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNISGRVPDTKAQFGTFDERSYEGNPFL 973

Query: 61   CGSMIKRKCSSALAPPATPTGGGEDEGD-SVIDMVALRWSFGASYVSVILGLFAALWINS 119
            CG+++KRKC++++ PP  P+   E E     I+ V    SF  SY+ ++LG    L+IN 
Sbjct: 974  CGTLLKRKCNTSIEPPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINP 1033

Query: 120  YWRRLWFYFIDRCIDTCYYWLF 141
            YWR  WF FI+ CI +CYY++F
Sbjct: 1034 YWRHRWFNFIEECIYSCYYFVF 1055

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 2    IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
            IESLDLS NKLSG IP +L ELNFL  F+V+YNN SG +PD K QF TFD+RSY+GN  L
Sbjct: 991  IESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFL 1050

Query: 61   CGSMIKRKCSSALAPPATPTGGGEDEGD-SVIDMVALRWSFGASYVSVILGLFAALWINS 119
            CG ++KRKC++++  P  P+   E E     I+ V    SF  SY+ ++LG    L+IN 
Sbjct: 1051 CGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINP 1110

Query: 120  YWRRLWFYFIDRCIDTCYYWLF 141
            YWR  WF FI+ CI +CYY++F
Sbjct: 1111 YWRHRWFNFIEECIYSCYYFVF 1132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743502|emb|CBI36369.3| unnamed protein product [Vitis vinifera]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
           IESLDLS NKLSG IP +L ELNFL  F+V+YNN SG +PD K QF TFD+RSY+GN  L
Sbjct: 602 IESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFL 661

Query: 61  CGSMIKRKCSSALAPPATPTGGGEDEGD-SVIDMVALRWSFGASYVSVILGLFAALWINS 119
           CG ++KRKC++++  P  P+   E E     I+ V    SF  SY+ ++LG    L+IN 
Sbjct: 662 CGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINP 721

Query: 120 YWRRLWFYFIDRCIDTCYYWLF 141
           YWR  WF FI+ CI +CYY++F
Sbjct: 722 YWRHRWFNFIEECIYSCYYFVF 743

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115344|ref|XP_002332173.1| predicted protein [Populus trichocarpa] gi|222832421|gb|EEE70898.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 96/141 (68%), Gaps = 4/141 (2%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
           IESLDLS N L+GRIP QL ELNFL+ FNVSYNNLSG  P+ K QFATFD+ SYKGN  L
Sbjct: 402 IESLDLSHNNLNGRIPAQLVELNFLAVFNVSYNNLSGRTPEMKYQFATFDESSYKGNPLL 461

Query: 61  CGSMIKRKCSSALAPPA-TPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINS 119
           CG  ++  C    +P A  P     D+G  +IDM +   SFG  Y+ V+L + A L IN 
Sbjct: 462 CGPPLQNSCDKTKSPSARLPNDSNGDDG--LIDMDSFYASFGVFYIIVVLTIAALLCINP 519

Query: 120 YWRRLWFYFIDRCIDTCYYWL 140
           +WRR WFYFI+ CIDTCY +L
Sbjct: 520 HWRRRWFYFIEECIDTCYCFL 540

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 2/142 (1%)

Query: 2    IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
            IESLDLS NKL G IP +L ELNFL  F+V+YNN SG +PD K QF TFD+RSY+GN  L
Sbjct: 944  IESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFL 1003

Query: 61   CGSMIKRKCSSALAPPATPTGGGEDEGD-SVIDMVALRWSFGASYVSVILGLFAALWINS 119
            CG ++KRKC++++  P  P+   E E     I+ V    SF  SY+ ++LG    L+IN 
Sbjct: 1004 CGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVIILYINP 1063

Query: 120  YWRRLWFYFIDRCIDTCYYWLF 141
            YWR  WF FI+ CI +CYY++F
Sbjct: 1064 YWRHRWFNFIEECIYSCYYFVF 1085

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 2/142 (1%)

Query: 2    IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
            IESLDLS NKL G IP +L ELNFL+ F+V+YNN+SG +P+ K QFATFD+ SY+GN  L
Sbjct: 873  IESLDLSYNKLGGEIPLELVELNFLAVFSVAYNNISGRVPNAKAQFATFDESSYEGNPFL 932

Query: 61   CGSMIKRKCSSALAPPATPTGGGEDEGD-SVIDMVALRWSFGASYVSVILGLFAALWINS 119
            CG ++KRKC++++  P  P+   E E     I+ V    SF  SY+ ++LG    L+IN 
Sbjct: 933  CGELLKRKCNTSIESPCAPSQSFESETKWYDINHVVFFASFTTSYIMILLGFVTILYINP 992

Query: 120  YWRRLWFYFIDRCIDTCYYWLF 141
            YWR  WF FI+ C+ +CYY++F
Sbjct: 993  YWRHRWFNFIEECVYSCYYFVF 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124498|ref|XP_002330038.1| predicted protein [Populus trichocarpa] gi|222871463|gb|EEF08594.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 92/141 (65%), Gaps = 4/141 (2%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
           IESLDLS N L GRIP QL EL FL+ FNVSYNNLSG  P+ K QFATFD+ SYKGN  L
Sbjct: 500 IESLDLSHNNLKGRIPTQLVELTFLAVFNVSYNNLSGRTPEIKNQFATFDESSYKGNPLL 559

Query: 61  CGSMIKRKCSSALAPPA-TPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINS 119
           CG  ++  C    +P A  P     D G   IDM +   SFG  Y+ V+L + A L IN 
Sbjct: 560 CGPPLQNSCDKIESPSARVPNDSNGDGG--FIDMDSFYASFGVCYIIVVLTIAAVLCINP 617

Query: 120 YWRRLWFYFIDRCIDTCYYWL 140
           +WRR WFYFI+ CIDTCY +L
Sbjct: 618 HWRRRWFYFIEECIDTCYCFL 638

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743521|emb|CBI36388.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 96/142 (67%), Gaps = 2/142 (1%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
           IESLDLS NKL G IP +L ELNFL+ F+V+YNN+SG +PD K QFATFD+ SY+GN  L
Sbjct: 365 IESLDLSYNKLGGEIPLELVELNFLAVFSVAYNNISGRVPDAKAQFATFDESSYEGNPFL 424

Query: 61  CGSMIKRKCSSALAPPATPTGGGEDEGD-SVIDMVALRWSFGASYVSVILGLFAALWINS 119
           CG ++KRKC++ +     P+   E E     I+ V    SF  SY+ ++LG    L+IN 
Sbjct: 425 CGELLKRKCNTCIESSCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINP 484

Query: 120 YWRRLWFYFIDRCIDTCYYWLF 141
           YWR  WF FI+ CI +CYY++F
Sbjct: 485 YWRHRWFNFIEECIYSCYYFVF 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482757|ref|XP_002268914.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 96/141 (68%), Gaps = 2/141 (1%)

Query: 2    IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
            IESLDLS NKL G IP +L ELNFL  F+V+YNN+SG +PD K QFATFD+ +Y+GN  L
Sbjct: 874  IESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNISGRVPDTKAQFATFDESNYEGNPFL 933

Query: 61   CGSMIKRKCSSALAPPATPTGGGEDEGD-SVIDMVALRWSFGASYVSVILGLFAALWINS 119
            CG ++KRKC++++  P  P+   E E     I+ V    SF  SY+ ++LG    L+IN 
Sbjct: 934  CGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIIILLGFATILYINP 993

Query: 120  YWRRLWFYFIDRCIDTCYYWL 140
            YWR  WF FI+ CI +CYY++
Sbjct: 994  YWRHRWFNFIEECIYSCYYFV 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124502|ref|XP_002330039.1| predicted protein [Populus trichocarpa] gi|222871464|gb|EEF08595.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 92/141 (65%), Gaps = 4/141 (2%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDRSYKGNSAL 60
           IESLDLS N L+GRIP QL EL FL+ FNVSYNNLSG  P+ K QFATFD+ SYKGN  L
Sbjct: 302 IESLDLSHNNLNGRIPAQLIELTFLAVFNVSYNNLSGRTPEMKNQFATFDESSYKGNPLL 361

Query: 61  CGSMIKRKCSSALAPPA-TPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINS 119
           CG  ++  C    +P A  P     D G   IDM +   SFG  Y+ ++L + A L IN 
Sbjct: 362 CGPPLQNSCDKTESPSARVPNDSNGDGG--FIDMYSFYASFGVCYIIMVLTVAAVLRINP 419

Query: 120 YWRRLWFYFIDRCIDTCYYWL 140
           +WRR WFYFI+ CIDTC  +L
Sbjct: 420 HWRRRWFYFIEECIDTCCCFL 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.897	0.121	0.503	5.6e-29
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.870	0.143	0.514	5.5e-27
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.857	0.126	0.488	6.8e-27
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.877	0.133	0.492	1.7e-26
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.897	0.145	0.454	8.6e-26
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.897	0.135	0.455	8.9e-25
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.897	0.141	0.401	1.4e-21
TAIR|locus:2020382	756	RLP3 "AT1G17250" [Arabidopsis	0.700	0.136	0.443	3.5e-17
TAIR|locus:2207056	1095	PSY1R "PSY1 receptor" [Arabido	0.734	0.098	0.454	7.8e-16
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.850	0.141	0.407	9.5e-16

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 69/137 (50%), Positives = 85/137 (62%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             +ESLDLS NKL G IPP L +LN L   N+SYNNLSG IP K    TFD+RSY GN+ LC
Sbjct:   934 LESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLC 993

Query:    62 GSMIKRKCSSALAP--PATPTGGGEDEGD---SVIDMVALRWSFGASYVSVILGLFAALW 116
             G    + C S   P  P+  T   E+E +   +VIDMV   W+  A Y+S  L LFA L+
Sbjct:   994 GLPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLY 1053

Query:   117 INSYWRRLWFYFIDRCI 133
             I+S W R WFY +D C+
Sbjct:  1054 IDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 5.5e-27, P = 5.5e-27
 Identities = 70/136 (51%), Positives = 83/136 (61%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             IESLDLS NKL G IP QLT L  L  FNVSYNNLSG IP  +QF TF ++SY GN  LC
Sbjct:   752 IESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLC 811

Query:    62 GSMIKRKCSSALAPPATPTGGGEDEGDS---VIDMVALRWSFGASYVSVILGLFAALWIN 118
             GS  KR C        T + G E E D    ++D+V L WS G +YV+V++G    L  +
Sbjct:   812 GSPTKRSCGGT-----TISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFD 866

Query:   119 SYWRRLWFYFIDRCID 134
             S WRR WF  +D  ID
Sbjct:   867 SPWRRAWFCLVDTFID 882

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 6.8e-27, P = 6.8e-27
 Identities = 63/129 (48%), Positives = 84/129 (65%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             +ESLDLS N+L G IP QLT++  L+ FNVSYNNLSG +P   QF TF+ +SY GN  LC
Sbjct:   829 VESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLC 888

Query:    62 GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINSYW 121
             G  I   C+S       PT  G +  +S +DM +  WSF A+YV+++LG+ A+L  +S W
Sbjct:   889 GKSIDISCASN---NFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPW 945

Query:   122 RRLWFYFID 130
              R WFY +D
Sbjct:   946 SRAWFYIVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 65/132 (49%), Positives = 83/132 (62%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             +ES DLS N+L GRIP QLTEL  LS F VS+NNLSG IP   QF TFD  SY GN  LC
Sbjct:   829 MESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLC 888

Query:    62 GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINSYW 121
             G    R C++     A     G +  +S+IDMV+   SF A+YV++++G+ A+L  +S W
Sbjct:   889 GQPTNRSCNNNSYEEAD---NGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPW 945

Query:   122 RRLWFYFIDRCI 133
              R WFY +D  I
Sbjct:   946 SRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 8.6e-26, P = 8.6e-26
 Identities = 60/132 (45%), Positives = 76/132 (57%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             IESLDLS N L G IP QLT L  L+ FNVSYNNLSG IP  +QF TFD+ SY GN  LC
Sbjct:   769 IESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLC 828

Query:    62 GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINSYW 121
             G      C +         GG ED+ +  IDM+   WS   +YV+ ++G+   + ++  W
Sbjct:   829 GPPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSW 888

Query:   122 RRLWFYFIDRCI 133
             RR W   +D  I
Sbjct:   889 RRAWLRLVDAFI 900

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 8.9e-25, P = 8.9e-25
 Identities = 62/136 (45%), Positives = 77/136 (56%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             IESLDLS N L G IP QLT L  L+ FNVS+NNLSG IP   QF TF+D SY GN  LC
Sbjct:   833 IESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLC 892

Query:    62 GSMIKRKCSSALAPPATPTGGGEDEGD----SVIDMVALRWSFGASYVSVILGLFAALWI 117
             G+   R C           GG E+E D    + IDMV L W+ G++Y   ++G+   +  
Sbjct:   893 GTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCF 952

Query:   118 NSYWRRLWFYFIDRCI 133
             +  WRR W   +D  I
Sbjct:   953 DCPWRRTWLCIVDAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 53/132 (40%), Positives = 74/132 (56%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             +ESLDLS N L G IP  L+ L  L+ F+VS NNLSG IP   QF TF++ SY GN  LC
Sbjct:   796 VESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLC 855

Query:    62 GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGLFAALWINSYW 121
             G    R C +  +P     G  E++  + IDM+   +S  + YV+ ++G+   +  +  W
Sbjct:   856 GPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPW 915

Query:   122 RRLWFYFIDRCI 133
             RR W   +D  I
Sbjct:   916 RRAWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
 Identities = 47/106 (44%), Positives = 62/106 (58%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             +E LDLS N LSGRIP  LT L+++S FNV  N+L GPIP   QF TF   ++KGN  LC
Sbjct:   635 LERLDLSNNHLSGRIPWSLTSLHYMSYFNVVNNSLDGPIPTGSQFDTFPQANFKGNPLLC 694

Query:    62 GSMIKRKCSSALAPPATPTGGG--EDEGD-SVIDMVALRWSFGASY 104
             G ++   C ++   PAT T     EDE +   I ++ +   F  SY
Sbjct:   695 GGILLTSCKASTKLPATTTNKADTEDEEELKFIFILGVATGFFVSY 740

GO:0004672 "protein kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2207056 PSY1R "PSY1 receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 7.8e-16, P = 7.8e-16
 Identities = 50/110 (45%), Positives = 63/110 (57%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             +E LDLS N LSGRIP  LT L+FLS FNV+ N LSGPIP   QF TF   +++GN  LC
Sbjct:   631 LERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLC 690

Query:    62 GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWSFGASYVSVILGL 111
             G ++   C        T  G G+     V+ +V L   FG S + V+L L
Sbjct:   691 GGVLLTSCDPT-QHSTTKMGKGKVNRTLVLGLV-LGLFFGVSLILVLLAL 738

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IMP

GO:0009611 "response to wounding" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 9.5e-16, P = 9.5e-16
 Identities = 53/130 (40%), Positives = 70/130 (53%)

Query:     2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
             IESLDLS N+LSG IP  +  L+FL+  NVS+N L+G IP   Q       S++GN+ LC
Sbjct:   752 IESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLC 811

Query:    62 GSMIKRKCSSALAPPATPTGGGEDEGDSVIDMVALRWS-FGASY-VSVILGLFAALWINS 119
             G  ++  C    APPA      E+E +   +   L W   G  Y V V+LGL  A  I S
Sbjct:   812 GLPLQESCFGTNAPPAQHPKEEEEEEEE--EEQVLNWKGVGIGYGVGVLLGLAIAQLIAS 869

Query:   120 YWRRLWFYFI 129
             Y +  W  F+
Sbjct:   870 Y-KPEWLVFL 878

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64
           LDLS+N+LSG IP  L  +  L   N+S+N+L G +P    F   +  +  GN  LCG  
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG- 610

Query: 65  IKRKCSSALAP 75
                +S L P
Sbjct: 611 ---DTTSGLPP 618

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 21/38 (55%), Positives = 27/38 (71%)

Query: 4   SLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           SLDLS N+LSG+IP   +E+  LS  ++S N LSG IP
Sbjct: 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           +  L LS NKLSG IP +L+    L + ++S+N LSG IP 
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 21/42 (50%), Positives = 29/42 (69%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43
           +E+LDLSRN+ SG +P +L  L+ L    +S N LSG IPD+
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           + S+DLS   +SG+I   +  L ++   N+S N LSGPIPD
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD 111

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 12/80 (15%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKG----- 56
           +E LDLS N  +G IP  L +L  L   N++ N+LSG +P     A    R         
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP-----AALGGRLLHRASFNF 522

Query: 57  --NSALCGSMIKRKCSSALA 74
             N+ LCG    R C   L+
Sbjct: 523 TDNAGLCGIPGLRACGPHLS 542

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 7   LSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           L  N LSG IP ++  L  L++ ++ YNNL+GPIP
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNF-LSNFNVSYNNLSGPIP 41
           I++++LS N+LSG IP  +   +  L   N+S NN +G IP
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           ++S++LS N + G IPP L  +  L   ++SYN+ +G IP+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           L L  NK SG IP  L + N L+  ++S NNL+G IP+
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           ++ L L +NKLSG IPP +  L  L + ++S N+LSG IP+
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           +E L L+ N+L G+IP +L ++  L    + YNNLSG IP
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 4   SLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           SLDLS N LSG IP  + +L  L   ++  NN +G IP
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 18/37 (48%), Positives = 20/37 (54%)

Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           LDL  N L+G IP  L  L  L    +  N LSGPIP
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PLN03150	623	hypothetical protein; Provisional	99.5
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.34
PLN03150	623	hypothetical protein; Provisional	99.04
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.87
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.02
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.66
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.62
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.47
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.3
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.27
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.25
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.99
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.4
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.26
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.2
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	95.08
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.98
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	94.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	94.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	94.53
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	94.32
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.78
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.52
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.27
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.1
KOG4237	498	consensus Extracellular matrix protein slit, conta	93.08
KOG0617	264	consensus Ras suppressor protein (contains leucine	92.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	92.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	91.62
smart00370	26	LRR Leucine-rich repeats, outliers.	91.18
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	91.15
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	91.01
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	89.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	88.98
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	88.78
PF00558	81	Vpu: Vpu protein; InterPro: IPR008187 The Human im	88.6
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.51
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	87.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	87.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	86.46
PTZ00370	296	STEVOR; Provisional	86.44
TIGR01478	295	STEVOR variant surface antigen, stevor family. Thi	85.82
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	85.77
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.63
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.57
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	82.9
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	82.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	80.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	80.08

>PLN03150 hypothetical protein; Provisional

Probab=99.50  E-value=4.5e-14  Score=118.33  Aligned_cols=70  Identities=34%  Similarity=0.523  Sum_probs=46.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccc--cccCCccccccccCCcCCCCCCCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQ--FATFDDRSYKGNSALCGSMIKRKCS   70 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~   70 (147)
                      +|+.|||++|+|+|.+|..+++|++|+.|||++|+|+|.+|..+.  ...+....+.+|+.+|+.+....|.
T Consensus       467 ~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            356677777777777777777777777777777777777776541  2233455677888888765444553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.34  E-value=2e-12  Score=112.69  Aligned_cols=64  Identities=38%  Similarity=0.667  Sum_probs=48.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~   64 (147)
                      +|+.|||++|+++|.+|..+.+++.|+.+|+++|+++|.+|...++.++...++.||+.+||.+
T Consensus       548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            3667777777777777777777777777777777777777776667777777788888888754

>PLN03150 hypothetical protein; Provisional

Probab=99.04  E-value=3.9e-10  Score=94.78  Aligned_cols=60  Identities=33%  Similarity=0.610  Sum_probs=51.8

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSAL   60 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~l   60 (147)
                      +|+.|||++|+|+|.+|..++.++.|+.|||++|+|+|.+|..+ .+.++..+.+.+|...
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            47889999999999999999999999999999999999999876 6777777777777543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.95  E-value=2.4e-09  Score=93.59  Aligned_cols=62  Identities=35%  Similarity=0.519  Sum_probs=48.0

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG   62 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   62 (147)
                      +|+.|||++|+++|.+|..++.++.|+.||+++|+++|.+|..+ .+..+....+.+|+..+.
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~  586 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS  586 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence            36778888888888888888888888888888888888888766 456667777777765543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.54  E-value=7.5e-08  Score=53.52  Aligned_cols=36  Identities=42%  Similarity=0.704  Sum_probs=32.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      +|++||+++|+++ .||+.+++|+.|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5899999999999 68999999999999999999987

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=1.6e-07  Score=55.45  Aligned_cols=58  Identities=33%  Similarity=0.424  Sum_probs=47.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|++++|+++.--+..+..++.|++|++++|+++.--|..+ .+..+..+.+.+|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            58999999999997666789999999999999999986666554 56667777777764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.87  E-value=9.9e-06  Score=47.69  Aligned_cols=36  Identities=39%  Similarity=0.541  Sum_probs=33.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL   36 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l   36 (147)
                      +|+.||+++|+++.--|..|..++.|+++++++|+|
T Consensus        26 ~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   26 NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            488999999999988888999999999999999985

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.86  E-value=6.4e-06  Score=38.82  Aligned_cols=22  Identities=45%  Similarity=0.708  Sum_probs=17.4

Q ss_pred             CccEEECCCCcccccCchhhhcC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTEL   23 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l   23 (147)
                      +|++||||+|+++ .||+++++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            5788999999999 888887653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.02  E-value=0.00019  Score=62.12  Aligned_cols=38  Identities=32%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             EECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            5 LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         5 LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      |||++|+|+ .||..+.+++.|+.++|++|+|+|.+|..
T Consensus       427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            344444443 45555555556666666666666555553

>PLN03210 Resistant to P

Probab=96.89  E-value=0.0013  Score=59.44  Aligned_cols=59  Identities=15%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSA   59 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~   59 (147)
                      +|+.|+|++|...+.+|.+++++++|+.|++++|+.-+.+|....+.++..+.+.|+..
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSR  837 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCc
Confidence            47889999999999999999999999999999987778899876666666666666543

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.66  E-value=0.0012  Score=53.16  Aligned_cols=57  Identities=25%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSA   59 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~   59 (147)
                      +|..|||..|.|+ ++|+++.-+.+|+.||+|+|.+++--|+-..+ .+..+...|||.
T Consensus       253 ~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  253 SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             cceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            3678999999998 69999999999999999999999865553344 566667788864

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.62  E-value=0.002  Score=46.14  Aligned_cols=35  Identities=34%  Similarity=0.520  Sum_probs=10.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.||||+|.++. |+ .+..++.|++|++++|+++.
T Consensus        44 L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   44 LEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             --EEE-TTS--S---T-T----TT--EEE--SS---S
T ss_pred             CCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc
Confidence            5566666666663 32 35556666666666666653

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.55  E-value=0.00091  Score=53.74  Aligned_cols=39  Identities=31%  Similarity=0.561  Sum_probs=28.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      |..|||.+|.+. +||+.+++|++|++|++++|.|.  .|..
T Consensus       507 L~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  507 LTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             cceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            567777777776 57777777777777777777776  4443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.47  E-value=0.0016  Score=56.51  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=17.8

Q ss_pred             CCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778           25 FLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus        25 ~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      .|..|++++|+++ .+|.++ .+..+..+.+.+|+
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            3445555555554 455544 34555555666664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.30  E-value=0.0026  Score=50.96  Aligned_cols=64  Identities=17%  Similarity=0.212  Sum_probs=49.1

Q ss_pred             CccEEECCCCcccccCchhh------------------------hcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQL------------------------TELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYK   55 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~------------------------~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~   55 (147)
                      .|+.||||+|.+++.-+.+|                        .++..|++|+|.+|+++-.-|..+ ...++..+.+.
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            47789999999998777664                        345677888999999988888765 45666777788


Q ss_pred             cccCCcCCC
Q 046778           56 GNSALCGSM   64 (147)
Q Consensus        56 gn~~lcg~~   64 (147)
                      +|+..|...
T Consensus       355 ~Np~~CnC~  363 (498)
T KOG4237|consen  355 SNPFNCNCR  363 (498)
T ss_pred             cCcccCccc
Confidence            999888653

>PLN03210 Resistant to P

Probab=96.27  E-value=0.0067  Score=54.89  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      |+.|+|++|.....+|..++++++|+.|++++|+.-+.+|....+.++..+.+.|+.
T Consensus       659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            566666666655666666666777777777766555666665444555555555543

syringae 6; Provisional

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.25  E-value=0.0012  Score=30.88  Aligned_cols=18  Identities=39%  Similarity=0.549  Sum_probs=16.1

Q ss_pred             CCCeeecCCCcCCCCCCCc
Q 046778           25 FLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus        25 ~L~~l~ls~N~l~G~iP~~   43 (147)
                      +|+.||+++|+++ .||.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            4789999999999 89985

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.24  E-value=0.0021  Score=54.60  Aligned_cols=34  Identities=38%  Similarity=0.559  Sum_probs=19.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL   36 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l   36 (147)
                      |..||||+|+|+ +.|..+..-+++..||||+|++
T Consensus       105 Lt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I  138 (1255)
T KOG0444|consen  105 LTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI  138 (1255)
T ss_pred             ceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc
Confidence            455666666665 3555555555555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.11  E-value=0.0037  Score=44.82  Aligned_cols=58  Identities=28%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             CccEEECCCCcccccCchhh-hcCCCCCeeecCCCcCCCCCCC-cc-ccccCCccccccccC
Q 046778            1 MIESLDLSRNKLSGRIPPQL-TELNFLSNFNVSYNNLSGPIPD-KE-QFATFDDRSYKGNSA   59 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~-~~l~~L~~l~ls~N~l~G~iP~-~~-~~~~~~~~~~~gn~~   59 (147)
                      +|+.|++++|+++. ++..+ ..+++|+.|++++|++..---- .+ .++++..++..|||-
T Consensus        65 ~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   65 RLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             T--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             hhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            47788999999884 55545 3688889999999888652111 11 456666667777753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.99  E-value=0.0007  Score=47.01  Aligned_cols=38  Identities=26%  Similarity=0.530  Sum_probs=30.3

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP   41 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP   41 (147)
                      +.|+|++|.++ .+|.++..++.|+.+|+++|.|+-..-
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~  117 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPR  117 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchH
Confidence            46788888887 588888888888999999888876543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.68  E-value=0.014  Score=50.68  Aligned_cols=13  Identities=23%  Similarity=0.345  Sum_probs=6.5

Q ss_pred             CCCeeecCCCcCC
Q 046778           25 FLSNFNVSYNNLS   37 (147)
Q Consensus        25 ~L~~l~ls~N~l~   37 (147)
                      .|+.|++++|+|+
T Consensus       263 ~L~~L~Ls~N~L~  275 (754)
T PRK15370        263 ALQSLDLFHNKIS  275 (754)
T ss_pred             CCCEEECcCCccC
Confidence            4455555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.40  E-value=0.015  Score=50.48  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=15.0

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      |+.|||++|+|+ .+|..+.  +.|+.|++++|+|+
T Consensus       348 L~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        348 LQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             ccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence            344444444444 2443332  34555555555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.38  E-value=0.0048  Score=44.56  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=13.0

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcC
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL   36 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l   36 (147)
                      +.|++++|++. ++|.+++.|+.|+.||++-|.|
T Consensus        59 evln~~nnqie-~lp~~issl~klr~lnvgmnrl   91 (264)
T KOG0617|consen   59 EVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL   91 (264)
T ss_pred             hhhhcccchhh-hcChhhhhchhhhheecchhhh
Confidence            33444444443 2344444444443333333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.26  E-value=0.011  Score=32.56  Aligned_cols=34  Identities=15%  Similarity=0.368  Sum_probs=25.2

Q ss_pred             CCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778           24 NFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus        24 ~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      ++|++|++++|+++ .+|..+ .+..+..+.+.+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCC
Confidence            47899999999999 577644 67788887887774

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.22  E-value=0.0077  Score=47.05  Aligned_cols=36  Identities=31%  Similarity=0.312  Sum_probs=28.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGP   39 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~   39 (147)
                      ++.||+|+|.+.-.  ..++.|.+|..||||+|.|+-.
T Consensus       309 ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  309 LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             eeEEeccccceeee--hhhhhcccceEeecccchhHhh
Confidence            56788888888743  3378889999999999988643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.20  E-value=0.0024  Score=54.84  Aligned_cols=62  Identities=27%  Similarity=0.365  Sum_probs=43.1

Q ss_pred             CccEEECCCCcccccCchh----------------------hhcCCCCCeeecCCCcCCCCCCCcc--ccccCCcccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQ----------------------LTELNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKG   56 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~----------------------~~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~g   56 (147)
                      .|.+||||+|+|+- +|..                      +.+|.+|+.||+|+|-|+|----..  .+..+..+.+.|
T Consensus       210 ~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  210 KLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             cccccccccchhcc-ccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence            36778888888873 3422                      4567888999999998887433221  455666677889


Q ss_pred             ccCCcCC
Q 046778           57 NSALCGS   63 (147)
Q Consensus        57 n~~lcg~   63 (147)
                      ||..|.+
T Consensus       289 NPl~c~p  295 (1096)
T KOG1859|consen  289 NPLCCAP  295 (1096)
T ss_pred             CccccCH
Confidence            9888854

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=95.08  E-value=0.01  Score=45.29  Aligned_cols=38  Identities=29%  Similarity=0.452  Sum_probs=27.3

Q ss_pred             CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCC
Q 046778            1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      +|+.|+|++|++++.    ++..+..+..|+.|++++|++++
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            367888888888854    34445566778888888888875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.98  E-value=0.0071  Score=51.49  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=34.0

Q ss_pred             ccEEECCCCcccccCchh-hhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~-~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +..|+||+|++. +||.. +.+|+.|-+||||+|.|.--.|+-..+..+..+.+.+||
T Consensus       128 ~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  128 SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence            346778887776 46655 457777777788877776555543333344444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=94.82  E-value=0.012  Score=44.89  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=23.8

Q ss_pred             ccEEECCCCcccc----cCchhhhcC-CCCCeeecCCCcCCCC
Q 046778            2 IESLDLSRNKLSG----RIPPQLTEL-NFLSNFNVSYNNLSGP   39 (147)
Q Consensus         2 L~~LdLs~N~LsG----~iP~~~~~l-~~L~~l~ls~N~l~G~   39 (147)
                      |++||+++|++++    .+...+..+ +.|+.|++++|++++.
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  152 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA  152 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence            6667777777663    334445555 6677777777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=94.68  E-value=0.0091  Score=50.28  Aligned_cols=40  Identities=23%  Similarity=0.189  Sum_probs=20.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP   41 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP   41 (147)
                      |+.||||+|.++---++.+.-...|+.||||+|+++---|
T Consensus       295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             hhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            4445555555555555555555555555555555544333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=94.53  E-value=0.021  Score=50.45  Aligned_cols=53  Identities=23%  Similarity=0.342  Sum_probs=43.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYK   55 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~   55 (147)
                      |..||||+|.=-+++|.++++|-+|++||+++..++ .+|.++ .+..+..+...
T Consensus       573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLE  626 (889)
T ss_pred             eEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccc
Confidence            678999998888999999999999999999999888 788876 44554444433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=94.32  E-value=0.017  Score=48.75  Aligned_cols=57  Identities=25%  Similarity=0.314  Sum_probs=47.6

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcccc-ccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQF-ATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~-~~~~~~~~~gn   57 (147)
                      ++++|||+.|+++-.=-.++-+|+.|+.||||+|.+.---++++.| +++..+++..|
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence            4688999999999888888999999999999999998888887744 56666665555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.78  E-value=0.045  Score=23.78  Aligned_cols=13  Identities=31%  Similarity=0.452  Sum_probs=7.1

Q ss_pred             CCCeeecCCCcCC
Q 046778           25 FLSNFNVSYNNLS   37 (147)
Q Consensus        25 ~L~~l~ls~N~l~   37 (147)
                      +|+.|++++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            5677777777764

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.62  E-value=0.021  Score=26.90  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=13.0

Q ss_pred             CccEEECCCCcccccCchhhh
Q 046778            1 MIESLDLSRNKLSGRIPPQLT   21 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~   21 (147)
                      +|+.|||++|+++..-...++
T Consensus         3 ~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    3 NLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             T-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCEEEccCCcCCHHHHHHhC
Confidence            467888888888776555443

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.52  E-value=0.023  Score=49.09  Aligned_cols=35  Identities=40%  Similarity=0.530  Sum_probs=30.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |++||||+|.++-.-  .+..++.|++||+++|+|.-
T Consensus       189 le~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~  223 (1096)
T KOG1859|consen  189 LESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH  223 (1096)
T ss_pred             hhhhccchhhhhhhH--HHHhcccccccccccchhcc
Confidence            678999999999653  78889999999999999964

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.27  E-value=0.016  Score=50.87  Aligned_cols=59  Identities=29%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             ccEEECCCCcccccCchh-hhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778            2 IESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG   62 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~-~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   62 (147)
                      |+.|+||+|+|. ++|+. +.++..|+.|+||+|+|+ .+|.+. ....+..+.-.+|..+|-
T Consensus       385 LKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f  445 (1081)
T KOG0618|consen  385 LKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF  445 (1081)
T ss_pred             eeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec
Confidence            556666666665 34433 455666666666666664 345443 233333333344544443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.10  E-value=0.036  Score=48.79  Aligned_cols=41  Identities=29%  Similarity=0.429  Sum_probs=35.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      +|+++|+|+|+|++ +|++++.+.+|+.++..+|+| -.+|..
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~r  282 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL-VALPLR  282 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhH-HhhHHH
Confidence            47899999999997 789999999999999999999 455543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=93.08  E-value=0.038  Score=44.54  Aligned_cols=55  Identities=27%  Similarity=0.323  Sum_probs=41.8

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      ..++|..|+++---|..|+.+..|+.+|||+|+++-.-|..+ .+..+..+...||
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence            468999999997777779999999999999999998888755 3344444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=92.97  E-value=0.012  Score=42.64  Aligned_cols=42  Identities=24%  Similarity=0.515  Sum_probs=33.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC-CCCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG-PIPDK   43 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G-~iP~~   43 (147)
                      +|..|+++-|+|. ..|..|+.++.|+.||+++|+|+- .+|-.
T Consensus        80 klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgn  122 (264)
T KOG0617|consen   80 KLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGN  122 (264)
T ss_pred             hhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcc
Confidence            4677888888887 478889999999999999998875 45543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=92.51  E-value=0.05  Score=43.18  Aligned_cols=36  Identities=42%  Similarity=0.717  Sum_probs=20.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.||+++|++. .+|..+.+++.|+.|++++|+++-
T Consensus       142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~  177 (394)
T COG4886         142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD  177 (394)
T ss_pred             cccccccccchh-hhhhhhhccccccccccCCchhhh
Confidence            455666666665 344455566666666666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.62  E-value=0.1  Score=39.56  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=33.0

Q ss_pred             CccEEECCCC--cccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            1 MIESLDLSRN--KLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         1 ~L~~LdLs~N--~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      +|+.|++|.|  +.+|..+...-.+++|+++++|.|++.-
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence            4789999999  7788888888888999999999998864

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.18  E-value=0.18  Score=24.03  Aligned_cols=17  Identities=35%  Similarity=0.399  Sum_probs=13.4

Q ss_pred             CCCCCeeecCCCcCCCC
Q 046778           23 LNFLSNFNVSYNNLSGP   39 (147)
Q Consensus        23 l~~L~~l~ls~N~l~G~   39 (147)
                      |+.|+.|+|++|+++--
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00370        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            46789999999987643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.18  E-value=0.18  Score=24.03  Aligned_cols=17  Identities=35%  Similarity=0.399  Sum_probs=13.4

Q ss_pred             CCCCCeeecCCCcCCCC
Q 046778           23 LNFLSNFNVSYNNLSGP   39 (147)
Q Consensus        23 l~~L~~l~ls~N~l~G~   39 (147)
                      |+.|+.|+|++|+++--
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00369        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            46789999999987643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=91.15  E-value=0.14  Score=41.33  Aligned_cols=56  Identities=23%  Similarity=0.303  Sum_probs=37.0

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +|..|||..|++.+. ...+..+++|++||+|+|+++..-+.. .+..+..+.+.||.
T Consensus        96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNL  151 (414)
T ss_pred             ceeeeeccccchhhc-ccchhhhhcchheeccccccccccchh-hccchhhheeccCc
Confidence            367788888888864 333677888888888888887766543 22334445555553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=91.01  E-value=0.16  Score=42.79  Aligned_cols=37  Identities=30%  Similarity=0.511  Sum_probs=34.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGP   39 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~   39 (147)
                      |..||+|.|+++ .||..|-+|+.|++|-|.+|-|.-+
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            778999999999 6999999999999999999999765

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=89.14  E-value=0.12  Score=36.08  Aligned_cols=8  Identities=0%  Similarity=-0.296  Sum_probs=3.2

Q ss_pred             hhhhhhhh
Q 046778           97 RWSFGASY  104 (147)
Q Consensus        97 ~~~~~~~~  104 (147)
                      ++++++|+
T Consensus        51 VIGvVVGV   58 (154)
T PF04478_consen   51 VIGVVVGV   58 (154)
T ss_pred             EEEEEecc
Confidence            34443443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.98  E-value=0.18  Score=39.52  Aligned_cols=41  Identities=37%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             ccEEECCCCccccc--CchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGR--IPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~--iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      +..|||.+|.++--  |-.-+.+|+.|++||+|.|+|+..|-.
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~  115 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS  115 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc
Confidence            45789999998852  444466899999999999999876643

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=88.78  E-value=0.12  Score=27.84  Aligned_cols=14  Identities=7%  Similarity=0.043  Sum_probs=5.2

Q ss_pred             hhhhhHHHHHHHHH
Q 046778          100 FGASYVSVILGLFA  113 (147)
Q Consensus       100 ~~~~~~v~~~~~~~  113 (147)
                      +++++-++++++++
T Consensus        15 ~~VvVPV~vI~~vl   28 (40)
T PF08693_consen   15 VGVVVPVGVIIIVL   28 (40)
T ss_pred             EEEEechHHHHHHH
Confidence            33333333333333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells []

Probab=88.60  E-value=0.45  Score=29.68  Aligned_cols=33  Identities=18%  Similarity=0.068  Sum_probs=11.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhce
Q 046778          104 YVSVILGLFAALWINSYWRRLWFYFIDRCIDTC  136 (147)
Q Consensus       104 ~~v~~~~~~~~~~~~~~~r~~~~~~~d~~~~~~  136 (147)
                      +++.+.++++++.+..+++.+..+++++.+++.
T Consensus        14 v~~iiaIvvW~iv~ieYrk~~rqrkId~li~RI   46 (81)
T PF00558_consen   14 VALIIAIVVWTIVYIEYRKIKRQRKIDRLIERI   46 (81)
T ss_dssp             HHHHHHHHHHHHH------------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            333345555666565556666666777666543

; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.51  E-value=0.11  Score=36.26  Aligned_cols=54  Identities=19%  Similarity=0.372  Sum_probs=35.8

Q ss_pred             ccEEECCCCcccccCchhhhc-CCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTE-LNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~-l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |...+||.|.|.- +|..|.. .+.++.+|+++|+++- +|.++ ....+......-|
T Consensus        55 l~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   55 LTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFN  110 (177)
T ss_pred             EEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccC
Confidence            4557899999984 5666554 5688999999999874 67655 3444444444444

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=88.23  E-value=0.37  Score=23.59  Aligned_cols=12  Identities=58%  Similarity=0.833  Sum_probs=7.7

Q ss_pred             ccEEECCCCccc
Q 046778            2 IESLDLSRNKLS   13 (147)
Q Consensus         2 L~~LdLs~N~Ls   13 (147)
                      |++|||++|.+.
T Consensus         4 L~~LdL~~N~i~   15 (28)
T smart00368        4 LRELDLSNNKLG   15 (28)
T ss_pred             cCEEECCCCCCC
Confidence            566666666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=87.70  E-value=0.46  Score=37.69  Aligned_cols=40  Identities=40%  Similarity=0.566  Sum_probs=28.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      ++.||+++|.++- ++. ++.+..|+.|++++|.++..+|..
T Consensus       257 l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         257 LETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence            5677777777773 444 777778888888888777776653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=87.21  E-value=0.25  Score=38.86  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      |+.||||+|.++ .|-.++--++.++.|++|+|.+.
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~  320 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR  320 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEecccccee
Confidence            678999999998 57777778899999999999875

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=86.46  E-value=0.84  Score=33.79  Aligned_cols=53  Identities=21%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      ..+||+.|.+.- + ..|..+..|.+|.+++|+++-.=|.-. .+..+..+.+.+|
T Consensus        45 d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   45 DAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            457777777752 2 335667777778888877766555432 2333445555554

>PTZ00370 STEVOR; Provisional

Probab=86.44  E-value=1.2  Score=34.34  Aligned_cols=17  Identities=12%  Similarity=0.444  Sum_probs=9.3

Q ss_pred             HHHhhhhhhHHHHHHHH
Q 046778          115 LWINSYWRRLWFYFIDR  131 (147)
Q Consensus       115 ~~~~~~~r~~~~~~~d~  131 (147)
                      +|++|||++.|.|--.+
T Consensus       276 iwlyrrRK~swkhe~kk  292 (296)
T PTZ00370        276 IWLYRRRKNSWKHECKK  292 (296)
T ss_pred             HHHHHhhcchhHHHHHh
Confidence            34455556667665443

>TIGR01478 STEVOR variant surface antigen, stevor family

Probab=85.82  E-value=0.73  Score=35.43  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHh--hhhhhHHHH
Q 046778          107 VILGLFAALWIN--SYWRRLWFY  127 (147)
Q Consensus       107 ~~~~~~~~~~~~--~~~r~~~~~  127 (147)
                      .+.+++++++++  |||++.|.|
T Consensus       270 il~vvliiLYiWlyrrRK~swkh  292 (295)
T TIGR01478       270 ILTVVLIILYIWLYRRRKKSWKH  292 (295)
T ss_pred             HHHHHHHHHHHHHHHhhcccccc
Confidence            333444444444  444444543

This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=85.77  E-value=1.3  Score=28.28  Aligned_cols=29  Identities=3%  Similarity=0.001  Sum_probs=15.9

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhhhh
Q 046778           95 ALRWSFGASYVSVILGLFAALWINSYWRR  123 (147)
Q Consensus        95 ~~~~~~~~~~~v~~~~~~~~~~~~~~~r~  123 (147)
                      +..++.+.|+++.++++.++++.+.+||.
T Consensus        42 WpyLA~GGG~iLilIii~Lv~CC~~K~K~   70 (98)
T PF07204_consen   42 WPYLAAGGGLILILIIIALVCCCRAKHKT   70 (98)
T ss_pred             hHHhhccchhhhHHHHHHHHHHhhhhhhh
Confidence            34444555666655555555555555553

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.63  E-value=0.69  Score=22.40  Aligned_cols=14  Identities=29%  Similarity=0.487  Sum_probs=10.8

Q ss_pred             CCCCCeeecCCCcC
Q 046778           23 LNFLSNFNVSYNNL   36 (147)
Q Consensus        23 l~~L~~l~ls~N~l   36 (147)
                      +++|+.|++++|++
T Consensus         1 L~~L~~L~L~~NkI   14 (26)
T smart00365        1 LTNLEELDLSQNKI   14 (26)
T ss_pred             CCccCEEECCCCcc
Confidence            46788888888876

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.57  E-value=0.48  Score=23.02  Aligned_cols=18  Identities=39%  Similarity=0.645  Sum_probs=13.0

Q ss_pred             CCCCeeecCCCcCCCCCCC
Q 046778           24 NFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus        24 ~~L~~l~ls~N~l~G~iP~   42 (147)
                      ..|+.|++++|+|+. +|+
T Consensus         2 ~~L~~L~vs~N~Lt~-LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTS-LPE   19 (26)
T ss_pred             cccceeecCCCcccc-Ccc
Confidence            357889999998754 443

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=82.90  E-value=5.1  Score=23.51  Aligned_cols=7  Identities=14%  Similarity=0.278  Sum_probs=2.6

Q ss_pred             hhHHHHH
Q 046778          103 SYVSVIL  109 (147)
Q Consensus       103 ~~~v~~~  109 (147)
                      ++++|++
T Consensus        27 ~f~~G~l   33 (68)
T PF06305_consen   27 AFLLGAL   33 (68)
T ss_pred             HHHHHHH
Confidence            3333333

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=82.38  E-value=3.2  Score=32.34  Aligned_cols=9  Identities=0%  Similarity=-0.544  Sum_probs=3.9

Q ss_pred             HHHHHHHHh
Q 046778          124 LWFYFIDRC  132 (147)
Q Consensus       124 ~~~~~~d~~  132 (147)
                      +|..-+-++
T Consensus       288 kKKlQYiKL  296 (299)
T PF02009_consen  288 KKKLQYIKL  296 (299)
T ss_pred             hHHHHHHHH
Confidence            444444443

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=80.39  E-value=1.7  Score=32.21  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=42.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC--CCCCCccccccCCccccccccC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS--GPIPDKEQFATFDDRSYKGNSA   59 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~--G~iP~~~~~~~~~~~~~~gn~~   59 (147)
                      +|..|+|++|+++--=|.--.-+++|..|-|.+|++.  |.+-.-..+.++..+.+.||+-
T Consensus        65 rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   65 RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence            4788999999999766665555778999999999773  3332222456777777888853

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=80.08  E-value=0.86  Score=36.71  Aligned_cols=36  Identities=36%  Similarity=0.421  Sum_probs=24.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      +|+.||||+|.++.-.+  +..++.|+.|++++|.++.
T Consensus       119 ~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~  154 (414)
T KOG0531|consen  119 NLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD  154 (414)
T ss_pred             cchheeccccccccccc--hhhccchhhheeccCcchh
Confidence            36788888888886533  4456667777777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-11
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-11
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-09

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64
           LDLS NKL GRIP  ++ L  L+  ++S NNLSGPIP+  QF TF    +  N  LCG  
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744
Query: 65  IKR 67
           + R
Sbjct: 745 LPR 747

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM 64
           LDLS NKL GRIP  ++ L  L+  ++S NNLSGPIP+  QF TF    +  N  LCG  
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 741
Query: 65  IKR 67
           + R
Sbjct: 742 LPR 744

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           +  LDL  N++ G +P  LT+L FL + NVS+NNL G IP       FD  +Y  N  LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 62  GS 63
           GS
Sbjct: 306 GS 307

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  118 bits (297), Expect = 6e-32
 Identities = 33/86 (38%), Positives = 42/86 (48%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSAL 60
            +  LDLS NKL GRIP  ++ L  L+  ++S NNLSGPIP+  QF TF    +  N  L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740

Query: 61  CGSMIKRKCSSALAPPATPTGGGEDE 86
           CG  + R   S     A         
Sbjct: 741 CGYPLPRCDPSNADGYAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 6e-11
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
            + SL LS N LSG IP  L  L+ L +  +  N L G IP 
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
             L L  N L G IP +L  +  L    + +N+L+G IP 
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 5e-10
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
                +++     G   P       +   ++SYN LSG IP 
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
             LDLS N   G +PP     + L +  +S NN SG +P
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 9e-10
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           L LS N  SG IP +L +   L   +++ N  +G IP
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           + LD+S NKLSG     ++    L   N+S N   GPIP 
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           ++ L L  N  +G+IPP L+  + L + ++S+N LSG IP 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           +E+L L  N L+G IP  L+    L+  ++S N L+G IP 
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 1   MIESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPD 42
           ++ESL LS N  SG +P   L ++  L   ++S+N  SG +P+
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
             + LS N+L+G IP  +  L  L+   +S N+ SG IP 
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 7e-09
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNF-LSNFNVSYNNLSGPIPD 42
           ++ LDLS N+ SG +P  LT L+  L   ++S NN SGPI  
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 8e-09
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 2   IESLDLSRNKLSGRIPPQL--TELNFLSNFNVSYNNLSGPIPD 42
           + +LDLS N  SG I P L     N L    +  N  +G IP 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSN---FNVSYNNLSGPIP 41
           E LDLS N +SG         +         +S N +SG + 
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           E LD+S N  S  IP  L + + L + ++S N LSG    
Sbjct: 203 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLT-ELNFLSNFNVSYNNLSGPIP 41
           + L L+ NK +G IP  L+   + L+  ++S N+  G +P
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           + L +S NK+SG +   ++    L   +VS NN S  IP
Sbjct: 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           + L++S N+  G IPP    L  L   +++ N  +G IPD
Sbjct: 250 KLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 3   ESLDLSRNKLSGRIPP--QLTELNFLSNFNVSYNNLSGPIP 41
            SLDLSRN LSG +     L   + L   NVS N L  P  
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 5e-07
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA 47
           ESL LS + ++G +         L++ ++S N+LSGP+       
Sbjct: 80  ESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLG 123

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 3   ESLDLSRNKLSGRIP-PQLTELNFLSNFNVSYNNLSGPIPD 42
           + L++S N L          +LN L   ++S N++SG    
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 4  SLDLSRNKLS---GRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
          S+DLS   L+     +   L  L  L +  +S ++++G +  
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG 95

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
            +  LDL+ N  +G IP  + + +      ++ N ++G   
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 4   SLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
               +  +  G    QL  L+  +  N++     G    
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 91.1 bits (227), Expect = 4e-23
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC 61
           +  LDL  N++ G +P  LT+L FL + NVS+NNL G IP       FD  +Y  N  LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

Query: 62  GSMIKRKCS 70
           GS +   C+
Sbjct: 306 GSPLPA-CT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
            +LD S N LSG +PP ++ L  L       N +SG IPD
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
             L ++   +SG IP  L+++  L   + SYN LSG +P
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           +  +DLSRN L G               +++ N+L+  + 
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           +  S+ +SRN+L+G+IPP    LN L+  ++S N L G    
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV 215

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNF-NVSYNNLSGPIPD 42
             +    N++SG IP      + L     +S N L+G IP 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.0 bits (123), Expect = 2e-08
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 3   ESLDLS-RNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
             L +   N L G IPP + +L  L    +++ N+SG IPD
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 2  IESLDLSRNKLSGR--IPPQLTELNFLSNFNVS-YNNLSGPIPD 42
          + +LDLS   L     IP  L  L +L+   +   NNL GPIP 
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 7/47 (14%)

Query: 2   IESLDLSRNKLSGRIPP------QLTELNFLSNFNVSYNNLSGPIPD 42
           +  +DLS N  S   P        L      +  +   N      P+
Sbjct: 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
             L L     SGR+P  + +L  L    +  +       
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 2   IESLDLSRNKL-SGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           I+ + +  N L +  +   L ++  L      YN L G +P
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           +    D   N+     P  +T    L+   +  N++   + +
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
             L+   N+L G   P       L++ N++YN ++    +
Sbjct: 333 GMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38
            S++LS N++S       +  + LS+ N+  N L+ 
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 3   ESLDLSRNKLSG-------RIPPQLTELNFLSNFNVSYNNLSGPIPD 42
            ++D S N++          + P   +   +S+ N+S N +S    +
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 4/42 (9%), Positives = 13/42 (30%), Gaps = 3/42 (7%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
            +  L +  N +   +  ++     +S  ++  N        
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 1   MIESLDLSRNKLSGRIPP--QLTELNFLSNFNVSYNNLSGPIPD 42
           ++ S+DL  NKL+  +    + T L +L   ++SYN+ S   P 
Sbjct: 489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 7/56 (12%), Positives = 12/56 (21%), Gaps = 4/56 (7%)

Query: 3   ESLDLSRNKLSG----RIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSY 54
           E L L  +          P  ++             +      D +    F D   
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 4/38 (10%), Positives = 11/38 (28%), Gaps = 1/38 (2%)

Query: 4   SLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
            +    N ++  +   +  L  L  F +  +       
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 3   ESLDLSRNKLSGRIPPQLTE-LNFLSNFNVSYNNLSGPIPD 42
            SL+L+ N+++  IP         + N + ++N L   IP+
Sbjct: 356 ASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPN 394

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 7/45 (15%), Positives = 17/45 (37%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQF 46
           +  +++       ++P  L  L  +   NV+ N        K+ +
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 8/47 (17%)

Query: 3   ESLDLSRNKLSG-------RIPPQLTELNFLSNFNVSYNNLSGPIPD 42
            S++L  N L+                   L++ ++ +N L+  + D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSD 505

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 9/49 (18%)

Query: 3   ESLDLSRNKL--------SGRIPPQLTELNFLSNFNVSYNNL-SGPIPD 42
           + ++++ N+           +          +    + YNNL + P+  
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 3/59 (5%), Positives = 7/59 (11%), Gaps = 19/59 (32%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFN-------------------VSYNNLSGPIPD 42
               +  +        +  E                           V        +P 
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 9/59 (15%), Positives = 20/59 (33%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSAL 60
           +  L L+     GR+P  + +L  L   +   ++ +             D S +    +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 7/47 (14%)

Query: 2   IESLDLSRNKLSGRIPP------QLTELNFLSNFNVSYNNLSGPIPD 42
           + ++D+S N  S   P       QL         +   N +    P 
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 8/44 (18%), Positives = 17/44 (38%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQF 46
             ++L       ++P  L +L  L + N++ N        K  +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
             ++ LS N++           + +S   +S N ++  IP+
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPE 714

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 10/54 (18%)

Query: 3   ESLDLSRNKLSG---------RIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA 47
           +SL+++ N+            R+         +  F + YNNL    P      
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQ 570

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 5   LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43
            D   N++  + P  +T    L    +  N++   + +K
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 2   IESLDLSRNKLSGRIPP--QLTELNFLSNFNVSYNNLSGPIPD 42
           +E L  S NKL   IP       +  + + + SYN +     +
Sbjct: 621 VEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 6/63 (9%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL-SGPIPD--KEQFATFDDRSYKGNSA 59
             L +  N +   +  +L     L   +++ N   S  +        A      Y     
Sbjct: 809 IQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

Query: 60  LCG 62
           + G
Sbjct: 866 IRG 868

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 8/41 (19%), Positives = 15/41 (36%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           ++ L++S N            LN L   + S N++      
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 8/41 (19%), Positives = 13/41 (31%)

Query: 2  IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           ++LDLS N L             L   ++S   +      
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           +  LDLS+ +L    P     L+ L   N+S+NN       
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 2   IESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPD 42
           +E L ++ N       P   TEL  L+  ++S   L    P 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLTEL-NFLSNFNVSYNNLSGPIP 41
           + LD S N +      +L    + L+  N++ N+ +    
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 2   IESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPD 42
           +E LD   + L           L  L   ++S+ +       
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 3  ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
          + LDLSR ++          L+ LS   ++ N +      
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 7/40 (17%), Positives = 13/40 (32%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
            +L L+ N +        + L+ L        NL+     
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL-SGPIPD 42
           + L      L+      +  L  L   NV++N + S  +P+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 6/40 (15%), Positives = 12/40 (30%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           +  LD+S              L+ L    ++ N+      
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 3   ESLDLSRNKL-SGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           + L+++ N + S ++P   + L  L + ++S N +      
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           ++ LDLS N +   +      L  L + +  ++NL     
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 2   IESLDLSRNKLSGRIPPQL-TELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSAL 60
           ++SL+L +N ++             L+  ++ +N           F  + + ++     L
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 645

Query: 61  CGSMIKRKCSS 71
               +   C++
Sbjct: 646 SSHYL---CNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE 44
           +  L+L++NK+S       + L  L   ++  N +   +  +E
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK 43
           + L+LS N++    P     +  L    ++   L   + +K
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           ++ +DL  N L+            L + N+  N ++     
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           +  LDLS N L+         L  L  F + YNN+      
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 2  IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
          + SLD+  N +S   P    +L  L   N+ +N LS     
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 2  IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
          I  L+L+ N+L        T  + L++ +V +N +S   P+
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           +  L+L  N           +L  L   ++  NNL+     
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           +  L L  N +         +   L   ++S+N LS     
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           + +LDLS N LS        +L  L    +S N +     +
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           + L+L  N+LS            L+  ++  N++     +
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 3   ESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPD 42
           E LDL  N++   +  Q    L  +    +SYN       +
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 7/37 (18%), Positives = 10/37 (27%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG 38
           I  + LS NK           +  L    +    L  
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGP 39
           +  LDLS N+L     P   EL  + N ++  N     
Sbjct: 276 LSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           +ESL  S N L+  +P     L  L   N +   LS   P
Sbjct: 93  LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
           ES+    N L     P+L  L FL+      N L   +PD
Sbjct: 218 ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPD 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.2 bits (86), Expect = 9e-04
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQ 45
            SL + RN+L+ R+P  L  L+  +  N+  N LS       +
Sbjct: 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 3   ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS 37
           ++LDLS NKL+  + P+      ++  ++  N L 
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.2
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.92
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.76
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.72
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.51
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.46
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.38
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.31
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.3
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.21
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.21
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.21
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.17
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.13
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.06
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.03
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.02
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.99
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.97
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.96
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.83
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.77
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.69
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.53
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.5
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.5
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.4
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.36
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.33
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.22
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.2
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.18
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.1
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.34
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.31
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.03
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.63
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.96
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.52
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	93.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.39
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	89.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	88.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	88.14
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	87.76

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.53  E-value=5.2e-15  Score=124.81  Aligned_cols=73  Identities=44%  Similarity=0.780  Sum_probs=65.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCCCCCCCCCCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKCSSALA   74 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~   74 (147)
                      +|+.||||+|+|+|.||..+++++.|+.||+|+|+|+|+||...++.++...+|.||+++||.|.. .|....+
T Consensus       681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            478999999999999999999999999999999999999999889999999999999999999876 7875443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.20  E-value=1.4e-11  Score=93.67  Aligned_cols=68  Identities=43%  Similarity=0.817  Sum_probs=62.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCCCCCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKC   69 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c   69 (147)
                      +|++|||++|+++|.+|..+..++.|+.|++++|+++|.+|....+.++....+.||+.+||.|.. .|
T Consensus       245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            488999999999999999999999999999999999999999878889999999999999997754 45

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.97  E-value=6.2e-10  Score=93.86  Aligned_cols=57  Identities=28%  Similarity=0.482  Sum_probs=41.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      |+.||||+|+++|.||..+++++.|+.||+|+|+|+|.+|..+ .+..+..+.+.+|+
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            6677777777777777777777777777777777777777765 45566666666664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.92  E-value=1.5e-09  Score=92.46  Aligned_cols=59  Identities=25%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~   64 (147)
                      |+.|||++|+|++..|..+.  ++|+.||+++|+|+|.+|..  +.++..+.+.||+..|.++
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred             hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence            44555555555544333333  45555555555555555543  4466777888999988554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.76  E-value=7.6e-09  Score=73.32  Aligned_cols=61  Identities=21%  Similarity=0.310  Sum_probs=30.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG   62 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   62 (147)
                      |+.|||++|++++..|..+..+++|+.|++++|++++.+|..+ .+.++..+.+.+|+.-|.
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            4445555555554444444555555555555555555555443 334444455555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.72  E-value=2.1e-08  Score=69.75  Aligned_cols=61  Identities=18%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG   62 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   62 (147)
                      |+.|||++|+|++..|..+..+++|+.|++++|+|++..|..+ .+.++..+.+.+|+.-|.
T Consensus        56 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           56 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            4444444444444333334444455555555555544333322 334444445555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.70  E-value=2.3e-08  Score=76.41  Aligned_cols=63  Identities=21%  Similarity=0.237  Sum_probs=45.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~   63 (147)
                      +|+.|||++|+|+|..|..|.+|+.|+.|||++|+|++..|..+....+..+.+.+|+.-|.+
T Consensus        57 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            477888888888888887888888888888888888865554433333666677777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.68  E-value=2e-08  Score=72.62  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=34.6

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |++|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|+.-|..
T Consensus       107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            4555555555555555555555555666666666655555544 3445555555666555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.63  E-value=5.5e-08  Score=67.99  Aligned_cols=57  Identities=16%  Similarity=0.144  Sum_probs=38.9

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      .|+.|||++|++++..|..+..++.|+.|+|++|+|++..|..+ .+..+..+.+.+|
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            36778888888887777777777778888888887777444332 4555555555555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.60  E-value=5.5e-08  Score=78.96  Aligned_cols=64  Identities=17%  Similarity=0.184  Sum_probs=49.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-cc-ccCCccccccccCCcCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QF-ATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~-~~~~~~~~~gn~~lcg~~   64 (147)
                      +|+.|||++|+|++..|..+..+++|+.||+++|++++..|..+ .+ .++..+.+.||+.-|.+.
T Consensus       519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            46778888888887777778888888888888888888888765 33 467777888999888654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.58  E-value=6.3e-08  Score=68.73  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.|||++|++++..|..+..+++|+.|++++|++++..+..+ .+.++..+.+.+|+..|..
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            4455555555555444455555555555555555553333222 3444555556666665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.56  E-value=8e-08  Score=69.41  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=39.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|+..|..
T Consensus       106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            5566666666666666666666666666666666666555443 3455566666777766643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.51  E-value=1e-07  Score=67.39  Aligned_cols=56  Identities=16%  Similarity=0.251  Sum_probs=25.6

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++.+|..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            4444555555554444444445555555555555544444332 2333344344333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.51  E-value=1.7e-07  Score=68.03  Aligned_cols=61  Identities=20%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.|+|++|+++ .||..+..++.|+.|++++|++++..+..+ .+.++..+.+.||+.-|..
T Consensus       114 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          114 LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             hCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            455666666665 556666666666666666666665444333 3455556666667666544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.50  E-value=1.8e-07  Score=65.32  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      +|+.|||++|+|++-.|..+..++.|+.|+|++|++++..|..+ .+.++..+.+.+|+.-|.+
T Consensus        58 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            47889999999998555557889999999999999987555434 5677778888888877754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.48  E-value=2e-07  Score=64.75  Aligned_cols=58  Identities=17%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++|++++..|..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|.
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            47899999999999999999999999999999999997666544 56777777777774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.48  E-value=2.1e-07  Score=71.01  Aligned_cols=55  Identities=18%  Similarity=0.187  Sum_probs=26.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++ +|..++.+++|+.|++++|++.|.+|..+ .+.++..+.+.+|
T Consensus       208 L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          208 LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             CCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred             CCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence            4455555555553 44445555555555555555555555443 3334444444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.48  E-value=1.7e-07  Score=65.07  Aligned_cols=57  Identities=16%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|+.|||++|++++..|..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  110 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN  110 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence            36778888888876655667778888888888888876665543 4556666666555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.46  E-value=9.2e-08  Score=72.48  Aligned_cols=40  Identities=35%  Similarity=0.639  Sum_probs=17.0

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      ++|||++|+++|.+|..+..+++|++|++++|+++|.+|.
T Consensus       104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  143 (313)
T 1ogq_A          104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence            3444444444444444444444444444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.44  E-value=3.7e-07  Score=67.71  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=38.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.|||++|++++..|..++.+++|+.|++++|++++..|..+ .+.++..+.+.+|+..|..
T Consensus       159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence            5666666666666555556666666677777776666555443 4555666666666665544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.43  E-value=3.4e-07  Score=67.05  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG   62 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   62 (147)
                      |+.|||++|++++..|..++.+++|+.|++++|++++..|..+ .+.++..+.+.+|+.-|.
T Consensus       133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            5566666666665555456666666666666666665555443 345555666666665554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.43  E-value=1.9e-07  Score=71.33  Aligned_cols=58  Identities=17%  Similarity=0.100  Sum_probs=50.9

Q ss_pred             CccEEECCC-CcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSR-NKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~-N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++ |+|++..|..|++|++|+.|+|++|+|+|..|..+ .+.++..+.+.+|.
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            489999996 99999988999999999999999999999988865 57777777777774

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.39  E-value=6e-07  Score=63.76  Aligned_cols=40  Identities=23%  Similarity=0.253  Sum_probs=20.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP   41 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP   41 (147)
                      |++|||++|++++..|..+..++.|++|++++|++++..|
T Consensus        78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  117 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD  117 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence            4555555555554444444555555555555555554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.38  E-value=4.5e-07  Score=64.26  Aligned_cols=55  Identities=18%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|+|++|+++ .+|..+.+++.|+.|++++|++++..|..+ .+..+..+.+.+|
T Consensus        33 l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            556666666665 566666666666666666666665555433 3444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.37  E-value=5.2e-07  Score=65.10  Aligned_cols=56  Identities=11%  Similarity=0.138  Sum_probs=34.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++..|..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus        59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence            5666777777766666666666667777777776666555433 3444555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.37  E-value=5.7e-07  Score=70.71  Aligned_cols=63  Identities=19%  Similarity=0.174  Sum_probs=39.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~   64 (147)
                      |+.|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|+..|..+
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            5666666666666666666666677777777777666444332 45556666666776666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.35  E-value=5.4e-07  Score=68.77  Aligned_cols=64  Identities=16%  Similarity=0.140  Sum_probs=54.8

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~   64 (147)
                      +|+.|||++|++.|.+|..++.+++|+.|++++|++.|.+|..+ .+.++..+.+.+|+.+...|
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            47899999999999999999999999999999999999999876 67778888888876655433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.35  E-value=6.7e-07  Score=72.09  Aligned_cols=61  Identities=21%  Similarity=0.250  Sum_probs=33.3

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG   62 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   62 (147)
                      |+.|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++....+.+|+..|.
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            4555555555555555555555555555555555555554433 344455555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.33  E-value=2.2e-07  Score=62.66  Aligned_cols=56  Identities=23%  Similarity=0.281  Sum_probs=37.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|+|++|++++.  ..++.++.|+.|++++|++++.+|... .+.++..+.+.+|.
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~   99 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK   99 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc
Confidence            366777777777765  566777777777777777777666654 35566666665553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.32  E-value=3.7e-07  Score=75.49  Aligned_cols=62  Identities=11%  Similarity=0.127  Sum_probs=50.6

Q ss_pred             CccEEECCCCccccc-----------------Cchhhh--cCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCC
Q 046778            1 MIESLDLSRNKLSGR-----------------IPPQLT--ELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSAL   60 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~-----------------iP~~~~--~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~l   60 (147)
                      +|++|||++|+++|+                 ||..++  ++++|++|++++|++.|.+|..+ .+.++..+.+.+|..+
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            478899999999997                 999988  99999999999999999999876 5677777777777534


Q ss_pred             cC
Q 046778           61 CG   62 (147)
Q Consensus        61 cg   62 (147)
                      .|
T Consensus       287 ~~  288 (636)
T 4eco_A          287 SG  288 (636)
T ss_dssp             CH
T ss_pred             cc
Confidence            43

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.31  E-value=5.5e-07  Score=73.34  Aligned_cols=62  Identities=21%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccc-cCCccccccccCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFA-TFDDRSYKGNSALCGSM   64 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~-~~~~~~~~gn~~lcg~~   64 (147)
                      |+.|||++|++++.+|..+.++++|+.||+++|+++ .+|..+ .+. .+....+.||+..|..+
T Consensus       499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            455566666666555555666666666666666655 455443 232 35556667777776554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.30  E-value=3.8e-07  Score=67.78  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=37.2

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.|||++|++++..|..+..++.|+.|++++|++++..|..+ .+..+..+.+.+|+..|..
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            5566666666666666666666666666666666665444323 3455555666666666544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.29  E-value=3.9e-07  Score=73.23  Aligned_cols=61  Identities=25%  Similarity=0.348  Sum_probs=50.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      +|+.|||++|+++| +|+.+..++.|+.||+++|++++ +|..+ .+..+..+.+.||+..|+.
T Consensus       192 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            47889999999998 45558999999999999999997 67665 5577888888999888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.28  E-value=7.5e-07  Score=71.64  Aligned_cols=62  Identities=21%  Similarity=0.248  Sum_probs=49.9

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~   64 (147)
                      +|+.|||++|+++ .||. ...++.|+.||+++|++++.+|..+ .+.++..+.+.+|+..|..+
T Consensus       452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            4678888888888 6887 5678899999999999998888765 66778888888998887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.27  E-value=5.2e-07  Score=73.47  Aligned_cols=61  Identities=21%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.|||++|++++.+|..+.+++.| .||+++|++++.+|..+ .+.++....+.||+..|..
T Consensus       502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            4555555555555555555555555 55555555555544433 3445555566666666643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=7.6e-07  Score=66.73  Aligned_cols=59  Identities=27%  Similarity=0.375  Sum_probs=47.8

Q ss_pred             CccEEECCCCcccc--cCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccc--cCCccccccccCCcC
Q 046778            1 MIESLDLSRNKLSG--RIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFA--TFDDRSYKGNSALCG   62 (147)
Q Consensus         1 ~L~~LdLs~N~LsG--~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~--~~~~~~~~gn~~lcg   62 (147)
                      +|+.||||+|+|++  .+|..+..+++|+.|||++|++++.  ..+ .+.  .+..+.+.||+ +|+
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Np-l~~  234 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNS-LCD  234 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTST-TGG
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCc-Ccc
Confidence            48899999999999  8889999999999999999999986  222 233  66777777886 554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.26  E-value=1.2e-06  Score=69.21  Aligned_cols=63  Identities=19%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~   64 (147)
                      |+.|+|++|++++..|..+..+++|+.||+++|++++..+..+ .+.++..+.+.+|+.-|...
T Consensus       244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            5566666666666666666777777777777777775555443 45667777788888777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.25  E-value=1.2e-06  Score=69.14  Aligned_cols=62  Identities=16%  Similarity=0.151  Sum_probs=43.3

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.|+|++|++++..|..+..+++|+.||+++|++++..+..+ .+.++..+.+.+|+..|.+
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            5566666666666666666777777777777787776555543 4566777788899888865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.25  E-value=1.2e-06  Score=71.87  Aligned_cols=56  Identities=27%  Similarity=0.448  Sum_probs=44.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++|+|+ .+|..++.+++|+.|+|++|++++ +|.-..+.++..+.+.+|.
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCC
Confidence            4788999999998 889999999999999999999988 7732256677777776663

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.24  E-value=2e-06  Score=63.53  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG   62 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   62 (147)
                      |+.|+|++|++++..|..+..+++|+.|++++|++++..+..+ .+.++..+.+.+|+..|.
T Consensus       159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            3444444444444333334444444444554444443322222 233444444555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.23  E-value=1.9e-06  Score=59.74  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|++++|++++..|..++.++.|++|++++|++++..|..+ .+.++..+.+.+|.
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            47899999999998777778999999999999999987666543 56677777777663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.22  E-value=1.8e-06  Score=64.79  Aligned_cols=61  Identities=26%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.|||++|+|++-.+..+..+++|+.|++++|+++ .+|... ....+....+.||+..|..
T Consensus       150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            344444444444322223344444555555555444 334332 2334455556778777754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.21  E-value=1.6e-06  Score=64.88  Aligned_cols=58  Identities=24%  Similarity=0.199  Sum_probs=41.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++|++++..|..+..+++|+.|++++|++++..+..+ .+.++..+.+.+|.
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            46778888888888778888888888888888888877655443 44556666666663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.21  E-value=1.9e-06  Score=62.39  Aligned_cols=57  Identities=16%  Similarity=0.110  Sum_probs=36.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|+.|+|++|++++-.+..+..++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus        65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  122 (229)
T 3e6j_A           65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN  122 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence            36677777777755444556777777777777777776555433 3455555555555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.21  E-value=1.7e-06  Score=70.12  Aligned_cols=58  Identities=24%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++|+|++.+|..++++++|+.|+|++|++++..|..+ .+.++..+.+.+|.
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence            47889999999999888889999999999999999988877655 45666766776664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.19  E-value=1.6e-06  Score=72.97  Aligned_cols=54  Identities=26%  Similarity=0.365  Sum_probs=26.0

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|+|+ .||..+++|++|+.|+|++|+|+ .||..+ .+.++..+.+.+|
T Consensus       272 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          272 LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            445555555555 45555555555555555555553 444433 3334444444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=1e-06  Score=75.76  Aligned_cols=61  Identities=10%  Similarity=0.133  Sum_probs=47.7

Q ss_pred             CccEEECCCCcccc-----------------cCchhhh--cCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCC
Q 046778            1 MIESLDLSRNKLSG-----------------RIPPQLT--ELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSAL   60 (147)
Q Consensus         1 ~L~~LdLs~N~LsG-----------------~iP~~~~--~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~l   60 (147)
                      +|+.|||++|+|+|                 .||..++  ++++|+.|++++|++.|.+|..+ .+.++..+.+.+|..+
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            47888888888888                 4888877  88888888888888888888766 5666777777666533


Q ss_pred             c
Q 046778           61 C   61 (147)
Q Consensus        61 c   61 (147)
                      .
T Consensus       529 s  529 (876)
T 4ecn_A          529 S  529 (876)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.18  E-value=2.5e-06  Score=61.42  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++|++++..|..+..++.|+.|++++|++++-.+..+ .+.++..+.+.+|.
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence            47889999999998889999999999999999999985444332 45666666666663

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.17  E-value=1.7e-06  Score=70.13  Aligned_cols=61  Identities=28%  Similarity=0.450  Sum_probs=47.6

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc-c-ccccCCccccccccCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK-E-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~-~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      +|+.|||++|+++ .||..+..++.|+.|++++|+++ .+|.. + .+..+....+.+|+..|..
T Consensus       451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            3677888888887 68888888888999999999988 57765 3 5667777778888887754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.15  E-value=1.3e-06  Score=59.88  Aligned_cols=37  Identities=30%  Similarity=0.441  Sum_probs=19.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.|||++|++++.+|..+.+++.|+.|++++|++++
T Consensus        73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence            4455555555555555555555555555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.14  E-value=2.4e-06  Score=68.36  Aligned_cols=61  Identities=31%  Similarity=0.482  Sum_probs=43.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc-c-ccccCCccccccccCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK-E-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~-~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      +|+.|||++|+++ .||..+..++.|+.|++++|+++ .+|.. + .+..+....+.+|+..|.+
T Consensus       422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence            3667777777777 67777777888888888888887 46654 3 4566666777777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.14  E-value=2.4e-06  Score=70.09  Aligned_cols=54  Identities=19%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      |+.|||++|+|++ +|. ++.+++|+.|++++|+|+ .+|..+ .+..+..+.+.+|.
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  497 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA  497 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence            6778888888887 776 888888888888888888 788766 56667776776663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.13  E-value=2.2e-06  Score=67.91  Aligned_cols=63  Identities=21%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      +|+.|+|++|++++..|..+..+++|+.||+++|++++..|..+ .+.++..+.+.+|+..|..
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence            46778888888888888888888888888888888887555443 4567777778888877754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.13  E-value=1.7e-06  Score=72.80  Aligned_cols=55  Identities=22%  Similarity=0.368  Sum_probs=42.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|++|||++|+|+ .||..+++|++|+.|||++|+|+ .+|..+ .+.++..+.+.+|
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N  303 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN  303 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC
Confidence            3677888888888 78888888888888888888888 778766 5566666666666

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.12  E-value=4.1e-06  Score=59.39  Aligned_cols=57  Identities=21%  Similarity=0.211  Sum_probs=37.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|++|||++|++++..+..+..++.|++|++++|++++..|..+ .+.++..+.+.+|
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence            36777788777776555556777778888888777776555433 4455555555555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.12  E-value=3.9e-06  Score=61.31  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=18.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGP   39 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~   39 (147)
                      |++|||++|++++..|..+..++.|+.|++++|++++.
T Consensus        61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   98 (251)
T 3m19_A           61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL   98 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc
Confidence            44455555555544444444444555555555544433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.11  E-value=9.7e-07  Score=62.35  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=40.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|++|++++|++++..|..++.+++|+.|++++|++++..|..+ .+..+..+.+.+|.
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            36777777777777777777777777777777777777666544 45556666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.08  E-value=3e-06  Score=58.71  Aligned_cols=55  Identities=15%  Similarity=0.183  Sum_probs=34.0

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc-cccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK-EQFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn   57 (147)
                      +|+.|||++|++++-  ..++.++.|+.|++++|++++..|.. ..+.++..+.+.+|
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN   98 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC
Confidence            366777777777764  45677777777777777776543332 14455555555555

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.08  E-value=4.9e-06  Score=55.92  Aligned_cols=57  Identities=12%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CccEEECCCCccc-ccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            1 MIESLDLSRNKLS-GRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~Ls-G~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +|+.|++++|+++ |.+|..+..++.|+.|++++|++++. +.-..+..+..+.+.+|.
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc
Confidence            3789999999999 99999999999999999999999987 332256667777776664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.06  E-value=2.2e-06  Score=70.74  Aligned_cols=63  Identities=16%  Similarity=0.165  Sum_probs=37.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc--ccccCCccccccccCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~~lcg~~   64 (147)
                      |+.|||++|++++-.|..+..++.|+.|++++|++++..|..+  .+.++....+.||+..|.++
T Consensus       562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             cceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            4556666666664333344556666666666666666555433  34566667777888888654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.06  E-value=3.6e-06  Score=63.36  Aligned_cols=41  Identities=32%  Similarity=0.528  Sum_probs=19.6

Q ss_pred             ccEEECCCCcccccCchhhhcC---CCCCeeecCCCcCCCCCCCc
Q 046778            2 IESLDLSRNKLSGRIPPQLTEL---NFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l---~~L~~l~ls~N~l~G~iP~~   43 (147)
                      |++||||+|++++.+|..+..+   +.|+.|++++|+++ .+|..
T Consensus       226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~  269 (310)
T 4glp_A          226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG  269 (310)
T ss_dssp             CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred             CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence            4445555555555444444443   34555555555554 44443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.06  E-value=5.1e-06  Score=68.68  Aligned_cols=58  Identities=21%  Similarity=0.248  Sum_probs=47.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeec------CCCcCCCCCCCcc-ccccCCccccccccC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNV------SYNNLSGPIPDKE-QFATFDDRSYKGNSA   59 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~l------s~N~l~G~iP~~~-~~~~~~~~~~~gn~~   59 (147)
                      +|+.|||++|++++ +|..+.+++.|+.|++      ++|++.|.+|..+ .+.++..+.+.+|..
T Consensus       514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            47889999999998 8999999999999988      5688889999876 567777777777754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.04  E-value=5.2e-06  Score=58.56  Aligned_cols=58  Identities=16%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++|++++..|..++.++.|+.|++++|++.+.+|.-..+.++..+.+.+|.
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence            4889999999999999999999999999999999977777743356777777776663

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.04  E-value=2.3e-06  Score=65.47  Aligned_cols=63  Identities=21%  Similarity=0.321  Sum_probs=51.2

Q ss_pred             CccEEECCCCcccc-------------------------------cCchhhhcCCCCCeeecCCCcCCCCCCCcc--ccc
Q 046778            1 MIESLDLSRNKLSG-------------------------------RIPPQLTELNFLSNFNVSYNNLSGPIPDKE--QFA   47 (147)
Q Consensus         1 ~L~~LdLs~N~LsG-------------------------------~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~--~~~   47 (147)
                      +|+.|||++|++++                               .+|..+..+++|+.||+++|+++ .+|...  .+.
T Consensus       223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~  301 (353)
T 2z80_A          223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT  301 (353)
T ss_dssp             TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence            36778888888877                               46777889999999999999999 788764  577


Q ss_pred             cCCccccccccCCcCCC
Q 046778           48 TFDDRSYKGNSALCGSM   64 (147)
Q Consensus        48 ~~~~~~~~gn~~lcg~~   64 (147)
                      ++..+.+.+|+..|..+
T Consensus       302 ~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          302 SLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TCCEEECCSSCBCCCHH
T ss_pred             CCCEEEeeCCCccCcCC
Confidence            88888899998888653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.04  E-value=4.4e-06  Score=65.60  Aligned_cols=41  Identities=24%  Similarity=0.237  Sum_probs=19.9

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |+.|||++|++++..|..+..++.|+.|++++|++++..|.
T Consensus       301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  341 (455)
T 3v47_A          301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR  341 (455)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred             CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence            44455555555544444444445555555555544444343

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.04  E-value=4.7e-06  Score=57.12  Aligned_cols=56  Identities=16%  Similarity=0.168  Sum_probs=37.5

Q ss_pred             CccEEECCCCccc-ccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            1 MIESLDLSRNKLS-GRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~Ls-G~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      +|+.|+|++|+++ |.+|..+..++.|+.|++++|++++. +.-..+..+..+.+.+|
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN   81 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC
Confidence            3677888888887 77887777777777777777777765 22224455555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.03  E-value=3.5e-06  Score=68.55  Aligned_cols=56  Identities=25%  Similarity=0.125  Sum_probs=32.3

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++.+|..+..++.|+.|++++|++++.+|..+ .+.++..+.+.+|
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            5556666666666666666666666666666666666555544 3444555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.02  E-value=7.9e-06  Score=60.42  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|++|||++|++++..|..++.++.|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence            36677777777776666667777777777777777776555443 3455555555555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.99  E-value=2.4e-06  Score=64.42  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=40.3

Q ss_pred             CccEEECCCCcccccCchhh--hcCCCCCeeecCCCcCCCCCCCcc-cc-----ccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQL--TELNFLSNFNVSYNNLSGPIPDKE-QF-----ATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~--~~l~~L~~l~ls~N~l~G~iP~~~-~~-----~~~~~~~~~gn   57 (147)
                      +|++|||++|+++|.+|..+  +.+++|+.|++++|++++. |..+ .+     .++..+.+.+|
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQA  159 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESC
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCC
Confidence            36788888888888888876  7788888888888888877 6543 22     55555555555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.97  E-value=1.1e-05  Score=61.03  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=31.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++..|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus       194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            5566666666666666666666666666666666665555433 3344444444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.97  E-value=8.7e-06  Score=60.86  Aligned_cols=58  Identities=21%  Similarity=0.275  Sum_probs=48.4

Q ss_pred             CccEEECCCCcccc-cCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSG-RIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG-~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|+|++|.+++ .+|..+..+++|+.|++++|++++..|..+ .+.++..+.+.+|.
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            47899999999998 688889999999999999999999888765 56677777777764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.96  E-value=7.1e-06  Score=63.18  Aligned_cols=56  Identities=20%  Similarity=0.081  Sum_probs=29.9

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|+|++|++++..|..+..++.|+.|||++|+|++..|..+ .+..+..+.+.+|
T Consensus        66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A           66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence            5556666666665555556666666666666666655444332 3344444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.96  E-value=7.2e-06  Score=63.17  Aligned_cols=58  Identities=19%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|++|||++|+|++..|..+..++.|+.|+|++|++++..|..+ .+.++..+.+.+|.
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence            48899999999998888889999999999999999998878765 56677777776663

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.96  E-value=5.4e-06  Score=62.64  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=44.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCG   62 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg   62 (147)
                      +|+.|||++|++++ +|+.+..+++|+.|++++|++++ +|..+ .+.++..+.+.+|+..|+
T Consensus       192 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             cCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCc
Confidence            46788888888886 45558888888888888888884 66655 456677777778877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.95  E-value=5.4e-06  Score=62.53  Aligned_cols=57  Identities=16%  Similarity=0.141  Sum_probs=36.7

Q ss_pred             CccEEECCCCcccccCchhhhcC-----CCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTEL-----NFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l-----~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|++|||++|++++. |..++.+     ++|++|++++|++++..|..+ .+.++..+.+.+|.
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence            366777777777776 6666666     677777777777766665554 44555555555553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.93  E-value=9e-06  Score=64.26  Aligned_cols=57  Identities=19%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|+.|||++|++++..|..+.++++|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            46788888888888888888888888888888888888777665 4566666666666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=1.3e-05  Score=68.98  Aligned_cols=53  Identities=28%  Similarity=0.506  Sum_probs=30.4

Q ss_pred             ccEEECCCCcccccCchhhh--cCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLT--ELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKG   56 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~--~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~g   56 (147)
                      |+.|||++|+|+ .||..+.  .+++|+.|++++|+++| +|..+ .+.++..+.+.+
T Consensus       730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred             ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence            556666666666 5666655  56666666666666665 55544 344444444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.92  E-value=1.4e-05  Score=59.80  Aligned_cols=37  Identities=27%  Similarity=0.267  Sum_probs=16.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.|+|++|++++..|..+..++.|+.|++++|++++
T Consensus       102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  138 (290)
T 1p9a_G          102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (290)
T ss_dssp             CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence            3444444444444333444444444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.91  E-value=9.3e-06  Score=61.51  Aligned_cols=55  Identities=20%  Similarity=0.210  Sum_probs=25.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++..|..+..++.|+.|++++|+++ .+|..+ .+..+..+.+.+|
T Consensus       219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence            344455555555444444555555555555555554 444433 3334444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.89  E-value=1e-05  Score=61.36  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      |+.|++++|++++.  +.+..+++|+.|++++|++++..|..+ .+.++..+.+.+|+
T Consensus       267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            55566666666553  235556666666666666655555443 34445555555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.88  E-value=1.9e-05  Score=59.70  Aligned_cols=56  Identities=20%  Similarity=0.207  Sum_probs=35.3

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++..|..+++++.|++|++++|++++..|..+ .+..+..+.+.+|
T Consensus        54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            5667777777776666667777777777777777776666544 3444444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.88  E-value=1.2e-05  Score=63.40  Aligned_cols=57  Identities=19%  Similarity=0.203  Sum_probs=44.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|+.|||++|++++..|..+.++++|+.|++++|++++..|..+ .+.++..+.+.+|
T Consensus       208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            46788888888888888888888888888888888888777655 4566666666666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.88  E-value=1.2e-05  Score=68.42  Aligned_cols=57  Identities=18%  Similarity=0.203  Sum_probs=36.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc--c-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK--E-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~--~-~~~~~~~~~~~gn   57 (147)
                      +|++|||++|++++..|..++++++|++|++++|++++.+|..  + .+.++..+.+.+|
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence            3667777777777777777777777777777777777766553  2 3344444444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.87  E-value=2.1e-05  Score=58.28  Aligned_cols=40  Identities=23%  Similarity=0.203  Sum_probs=19.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP   41 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP   41 (147)
                      |+.|+|++|++++..|..+..+++|+.|++++|++++..|
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence            4445555555554444444445555555555555544333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.87  E-value=1.1e-05  Score=60.59  Aligned_cols=54  Identities=31%  Similarity=0.503  Sum_probs=44.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC-CCCCccccccCCccccccccC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG-PIPDKEQFATFDDRSYKGNSA   59 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G-~iP~~~~~~~~~~~~~~gn~~   59 (147)
                      +|++|||++|+++ .+|..+.  ++|+.||+++|+++| ++|.  .+..+..+.+.+|+.
T Consensus       252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~--~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPD--ELPEVDNLTLDGNPF  306 (310)
T ss_dssp             TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTT--SCCCCSCEECSSTTT
T ss_pred             cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhh--hCCCccEEECcCCCC
Confidence            4789999999999 8999875  899999999999998 4543  456777777777753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.86  E-value=1.2e-05  Score=65.30  Aligned_cols=42  Identities=17%  Similarity=0.081  Sum_probs=22.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      |++|||++|++++..|..++++++|++|++++|++++..|..
T Consensus        59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  100 (606)
T 3t6q_A           59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA  100 (606)
T ss_dssp             CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred             ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence            445555555555555555555555555555555555544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.84  E-value=1.6e-05  Score=58.56  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=13.8

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      +.|||++|++++..|..+.+++.|+.|++++|+++
T Consensus        31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~   65 (276)
T 2z62_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ   65 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC
T ss_pred             cEEECCCCcccccCHhHhccccCCcEEECCCCcCC
Confidence            33444444444333333333444444444444333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.84  E-value=5.9e-06  Score=66.35  Aligned_cols=41  Identities=10%  Similarity=0.002  Sum_probs=20.3

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |+.|+|++|++++..|..++.++.|+.|++++|+++|.+|.
T Consensus       122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (487)
T 3oja_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (487)
T ss_dssp             CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence            34444555555554444455555555555555555554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.84  E-value=8.9e-06  Score=65.06  Aligned_cols=55  Identities=16%  Similarity=0.074  Sum_probs=33.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      |++|||++|++++..|..+++++.|++||+++|+++ .+|.. .+.++..+.+.+|.
T Consensus        47 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           47 LRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLSFNA  101 (520)
T ss_dssp             CCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECCSSC
T ss_pred             ccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEeccCCc
Confidence            566666666666666666666666666666666666 45554 44555555555553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.83  E-value=2.6e-05  Score=57.47  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=13.4

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      ++|||++|++++..|..+..++.|++|++++|+++
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             cEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            33334433333333333333333333333333333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.83  E-value=1.6e-05  Score=64.41  Aligned_cols=41  Identities=24%  Similarity=0.231  Sum_probs=19.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |+.|||++|++++..|..+.+++.|++|++++|++++..|.
T Consensus        54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   94 (562)
T 3a79_B           54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH   94 (562)
T ss_dssp             CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT
T ss_pred             cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH
Confidence            34455555555444444444445555555555544444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.83  E-value=1.2e-05  Score=55.73  Aligned_cols=35  Identities=23%  Similarity=0.202  Sum_probs=16.0

Q ss_pred             ccEEECCCCcccccCchhhhcCC-CCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELN-FLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~-~L~~l~ls~N~l~G   38 (147)
                      |+.|+|++|+++ .+|. +..+. +|+.||+++|++++
T Consensus        21 L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~   56 (176)
T 1a9n_A           21 DRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK   56 (176)
T ss_dssp             CEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE
T ss_pred             ceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc
Confidence            344555555555 2333 22222 55555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.82  E-value=1.6e-05  Score=63.89  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=30.9

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |++|||++|++++..|..+++++.|++||+++|++++..|..+ .+.++..+.+.+|
T Consensus        52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred             ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence            4555666666665555556666666666666666655554433 3444444455554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.81  E-value=3e-05  Score=57.15  Aligned_cols=41  Identities=24%  Similarity=0.274  Sum_probs=20.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |++|||++|++++..|..+..+++|+.|++++|++++..|.
T Consensus        87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  127 (270)
T 2o6q_A           87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR  127 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH
Confidence            44555555555544444444555555555555555544443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.81  E-value=1.3e-05  Score=64.47  Aligned_cols=56  Identities=14%  Similarity=0.129  Sum_probs=28.3

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC-CCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS-GPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~-G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.||+++|.+++.+|..+..+++|+.|++++|+++ |.+|..+ .+.++..+.+.+|
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            455555555555555555555555555555555554 4455433 2333444333333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.77  E-value=2.1e-05  Score=59.60  Aligned_cols=40  Identities=30%  Similarity=0.350  Sum_probs=22.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |++|||++|++++..|..+++++.|+.|++++|+++ .+|.
T Consensus        80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  119 (332)
T 2ft3_A           80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP  119 (332)
T ss_dssp             CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCS
T ss_pred             CcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCc
Confidence            455555555555555555555555666666655555 4444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.75  E-value=2.5e-05  Score=61.80  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=21.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      ++.|||++|++++..|..+.+++.|++|++++|++++..|.
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~   74 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG   74 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh
Confidence            34455555555555455555555555555555555544444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.74  E-value=3.7e-05  Score=62.97  Aligned_cols=56  Identities=11%  Similarity=0.093  Sum_probs=31.9

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++..|..++.++.|+.|++++|.+++..|..+ .+..+..+.+.+|
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  133 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN  133 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence            5566666666666655566666666666666666666555443 3444444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.73  E-value=3.9e-05  Score=63.26  Aligned_cols=41  Identities=20%  Similarity=0.194  Sum_probs=19.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |++|||++|++++..|..++++++|++||+++|++++..|.
T Consensus        99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence            44444444444444444444455555555555555444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.71  E-value=3.4e-05  Score=58.88  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=33.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++..|..+.+++.|++||+++|++++..+..+ .+.++..+.+.+|
T Consensus        78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A           78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred             CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence            5666666666666666666666777777777776664333212 3445555555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.70  E-value=1.3e-05  Score=60.44  Aligned_cols=56  Identities=29%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      +|++|||++|++++..|..+..++.|+.|++++|++++..|- ..+..+..+.+.+|
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNN   90 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCC
Confidence            378899999999998888899999999999999999876651 13444555444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.69  E-value=5.4e-05  Score=58.45  Aligned_cols=41  Identities=12%  Similarity=0.173  Sum_probs=21.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |+.|||++|++++..|..+..++.|++|++++|++++..|.
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  111 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  111 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence            45555555555554444555555555555555555554444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.69  E-value=4.5e-05  Score=62.42  Aligned_cols=37  Identities=22%  Similarity=0.280  Sum_probs=22.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.|||++|.+++..|..+++++.|+.|++++|++++
T Consensus       101 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  137 (597)
T 3oja_B          101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS  137 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC
Confidence            5566666666666555555666666666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.67  E-value=3.3e-05  Score=59.67  Aligned_cols=55  Identities=20%  Similarity=0.182  Sum_probs=33.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|.+++..|..+..++.|+.|++++|++++. |... .+.++..+.+.+|
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSS
T ss_pred             ccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCC
Confidence            56677777777776677777777777777777766653 3222 3444555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.67  E-value=1.2e-05  Score=64.05  Aligned_cols=40  Identities=33%  Similarity=0.436  Sum_probs=30.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC--CCCCcc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG--PIPDKE   44 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G--~iP~~~   44 (147)
                      +|+.|||++|+++ .+|.   .+++|+.|++++|+++|  .+|.++
T Consensus       338 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          338 RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV  379 (454)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             cCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence            3677888888887 4776   46788888888888888  777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.64  E-value=2.7e-05  Score=56.22  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=18.0

Q ss_pred             ccEEECCC-CcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSR-NKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~-N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |++|||++ |++++..|..+.+++.|+.|++++|++++
T Consensus        82 L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~  119 (239)
T 2xwt_C           82 VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM  119 (239)
T ss_dssp             CCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred             CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence            44455554 45544433444445555555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.62  E-value=8.1e-06  Score=57.58  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=16.0

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      |+.|||++|++++ +| .+..++.|+.|++++|+++
T Consensus        50 L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred             CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence            3444444444444 44 4444444444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.56  E-value=7.2e-05  Score=61.47  Aligned_cols=36  Identities=28%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |+.|||++|+|++ ||.   .+++|+.|++++|++++ +|.
T Consensus       122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~  157 (571)
T 3cvr_A          122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE  157 (571)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred             CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC
Confidence            4555555555555 444   44555566666665555 444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.53  E-value=9.3e-05  Score=60.81  Aligned_cols=49  Identities=20%  Similarity=0.317  Sum_probs=28.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      |+.|||++|+|++ ||.   .+++|+.|++++|+|++ +|. +. .++..+.+.+|
T Consensus       142 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N  190 (571)
T 3cvr_A          142 LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTN  190 (571)
T ss_dssp             CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSS
T ss_pred             ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCC
Confidence            5666666666665 555   45666666666666666 555 32 44444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.53  E-value=0.00012  Score=53.94  Aligned_cols=35  Identities=34%  Similarity=0.539  Sum_probs=23.4

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.|||++|++++..|  +..++.|+.|++++|++++
T Consensus        65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~   99 (263)
T 1xeu_A           65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN   99 (263)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC
T ss_pred             CCEEECCCCccCCChh--hccCCCCCEEECCCCccCC
Confidence            5667777777766433  6667777777777777666

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.52  E-value=1.4e-05  Score=56.27  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=46.5

Q ss_pred             ccEEECCCCcccccCch------hhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            2 IESLDLSRNKLSGRIPP------QLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~------~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +..++++.|+|+|.+|.      .+..++.|+.|++++|++++ +| .+ .+..+..+.+.+|.
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~   81 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL   81 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC
Confidence            56789999999999998      99999999999999999999 78 44 56677777776663

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.50  E-value=1.7e-05  Score=59.83  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=33.8

Q ss_pred             ccEEECCCCccccc-CchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGR-IPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~-iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |++|||++|++++. +|..+..+++|+.|++++|++++.+|..+ .+.++..+.+.+|
T Consensus        95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            56666666666665 66666666666666666666666555443 3444555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.50  E-value=7e-05  Score=61.89  Aligned_cols=53  Identities=25%  Similarity=0.346  Sum_probs=28.9

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      |+.|||++|++++..|  +..++.|+.|+|++|++++. |.-..+..+..+.+.+|
T Consensus       155 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSE
T ss_pred             CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCC
Confidence            5566666666665544  55666666666666666552 32223444454455544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.50  E-value=7.4e-05  Score=55.88  Aligned_cols=38  Identities=32%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP   41 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP   41 (147)
                      |+.|||++|++++.  ..+..+++|+.|++++|++++..|
T Consensus       136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            55566666666553  345555556666666665555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.50  E-value=0.00011  Score=54.09  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=18.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.|||++|++++ +| .+..+++|+.|++++|++++
T Consensus       108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A          108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred             ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence            4555555555554 22 35555555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.46  E-value=6.9e-05  Score=57.33  Aligned_cols=43  Identities=16%  Similarity=0.098  Sum_probs=36.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      ++++|||++|+++.--+..|.++++|+.|+|++|++.+.+|..
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence            4789999999999544456899999999999999999988864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.42  E-value=9.5e-05  Score=53.32  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNN   35 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~   35 (147)
                      |+.|||++|++++..|..+.+++.|+.|++++|+
T Consensus        33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   66 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV   66 (239)
T ss_dssp             CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS
T ss_pred             ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC
Confidence            4556666666665555556666666666666664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.41  E-value=0.00014  Score=57.91  Aligned_cols=54  Identities=24%  Similarity=0.314  Sum_probs=41.2

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALC   61 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lc   61 (147)
                      +|+.||+++|++++ +|..   ++.|+.|++++|+++ .+|.  ...++..+.+.+|...+
T Consensus       318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSS
T ss_pred             cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCCCCc
Confidence            47788999999887 7775   588999999999998 4777  35667777777775433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.40  E-value=0.00017  Score=59.77  Aligned_cols=51  Identities=24%  Similarity=0.367  Sum_probs=23.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.|||++|+|+ .||.   .+++|+.|++++|+++ .+|..+ .+.++..+.+.+|
T Consensus       243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence            344444444444 2333   3344555555555555 445433 3344444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.36  E-value=0.00021  Score=53.32  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=18.2

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.|||++|++++.  +.+..++.|+.|++++|++++
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD  148 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc
Confidence            45555555555542  334555555555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.35  E-value=0.00028  Score=56.09  Aligned_cols=39  Identities=36%  Similarity=0.372  Sum_probs=28.6

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      +|+.|||++|+++| +|  ++.++.|+.|++++|+++|..+.
T Consensus       213 ~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~  251 (457)
T 3bz5_A          213 QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS  251 (457)
T ss_dssp             TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred             CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence            36777888888877 66  67777888888888888775443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.33  E-value=0.00038  Score=46.25  Aligned_cols=60  Identities=17%  Similarity=0.233  Sum_probs=46.1

Q ss_pred             cEEECCCCccc-ccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCCC
Q 046778            3 ESLDLSRNKLS-GRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGSM   64 (147)
Q Consensus         3 ~~LdLs~N~Ls-G~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~~   64 (147)
                      ..+|.++++|+ -.||..+.  .+|+.|||++|+|+.--+..+ .+..+..+.+.||+..|...
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            36889999997 57887644  468999999999987444443 46677788899999998653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.33  E-value=0.00021  Score=59.04  Aligned_cols=54  Identities=24%  Similarity=0.349  Sum_probs=36.0

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      +|+.|+|++|+|++.  ..+..+++|+.|+|++|++++..| -..+..+..+.+.+|
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence            366777777777764  557777777788888887777666 224555666666555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.27  E-value=5.1e-05  Score=58.58  Aligned_cols=21  Identities=14%  Similarity=0.099  Sum_probs=7.9

Q ss_pred             CchhhhcCCCCCeeecCCCcC
Q 046778           16 IPPQLTELNFLSNFNVSYNNL   36 (147)
Q Consensus        16 iP~~~~~l~~L~~l~ls~N~l   36 (147)
                      +|..+..+++|+.|++++|++
T Consensus       236 l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          236 LAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHHHGGGCTTCCEEECTTCCC
T ss_pred             HHHHHccCCCcCEEECCCCCC
Confidence            333333333333333333333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.25  E-value=0.0001  Score=61.19  Aligned_cols=43  Identities=30%  Similarity=0.332  Sum_probs=40.2

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE   44 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~   44 (147)
                      +|+.|||++|+|+ .||..+.++++|+.|++++|.++|.+|..+
T Consensus       262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            4889999999999 899999999999999999999999998855

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.22  E-value=0.00036  Score=52.46  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=16.0

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.|||++|++++. |. +..++.|+.|++++|++++
T Consensus        65 L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           65 LIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             CCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC
T ss_pred             CCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC
Confidence            44455555544432 22 4444444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.22  E-value=0.00012  Score=56.47  Aligned_cols=17  Identities=18%  Similarity=0.114  Sum_probs=8.2

Q ss_pred             cCCCCCeeecCCCcCCC
Q 046778           22 ELNFLSNFNVSYNNLSG   38 (147)
Q Consensus        22 ~l~~L~~l~ls~N~l~G   38 (147)
                      .++.|+.|++++|++++
T Consensus        92 ~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             TCTTCCEEECCSCCCCT
T ss_pred             hCCcccEEECCCCcCCH
Confidence            44444444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.21  E-value=0.00011  Score=56.42  Aligned_cols=40  Identities=30%  Similarity=0.310  Sum_probs=17.6

Q ss_pred             ccEEECCCCcccccCchhhhcC-----CCCCeeecCCCcCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTEL-----NFLSNFNVSYNNLSGPIP   41 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l-----~~L~~l~ls~N~l~G~iP   41 (147)
                      |++|||++|++++..+..+..+     +.|+.||+++|++++..|
T Consensus        53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            3444444444444444444433     444444444444444333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.20  E-value=0.00036  Score=55.21  Aligned_cols=38  Identities=29%  Similarity=0.553  Sum_probs=19.9

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP   41 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP   41 (147)
                      |+.|||++|++++..|  ++.+++|+.|++++|++++..|
T Consensus       289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred             cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence            4455555555554322  4555555555555555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.18  E-value=0.00022  Score=53.88  Aligned_cols=55  Identities=18%  Similarity=0.259  Sum_probs=36.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +|+.||+++|++++.  +.+..+++|+.|++++|++++. |.-..+.++..+.+.+|.
T Consensus       244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred             CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCc
Confidence            367788888877763  4577777888888888877764 432245556665665553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.18  E-value=0.00016  Score=55.38  Aligned_cols=58  Identities=28%  Similarity=0.249  Sum_probs=43.4

Q ss_pred             CccEEECCCCcccccCc----hhhhcCC-CCCeeecCCCcCCCCCCCcc-cc-----ccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIP----PQLTELN-FLSNFNVSYNNLSGPIPDKE-QF-----ATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP----~~~~~l~-~L~~l~ls~N~l~G~iP~~~-~~-----~~~~~~~~~gn~   58 (147)
                      +|++|||++|++++.-+    ..+..++ .|++|++++|++++..|..+ ..     ..+..+.+.+|.
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            37889999999988777    6677788 89999999999988877554 21     556666666653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.18  E-value=0.00032  Score=55.51  Aligned_cols=35  Identities=26%  Similarity=0.291  Sum_probs=17.3

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      |+.|||++|++++..|  +..++.|+.|++++|++++
T Consensus       311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             CCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            4555555555555443  3444444444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.14  E-value=0.00021  Score=53.78  Aligned_cols=20  Identities=10%  Similarity=0.110  Sum_probs=8.4

Q ss_pred             CchhhhcCCCCCeeecCCCc
Q 046778           16 IPPQLTELNFLSNFNVSYNN   35 (147)
Q Consensus        16 iP~~~~~l~~L~~l~ls~N~   35 (147)
                      +|..+..+++|+.|++++|.
T Consensus       214 l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          214 LSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             HHHHHHHCTTCSEEECTTCT
T ss_pred             HHHHHhhCCCCCEEeCCCCC
Confidence            33334444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.14  E-value=0.00047  Score=51.78  Aligned_cols=18  Identities=28%  Similarity=0.432  Sum_probs=7.2

Q ss_pred             hhcCCCCCeeecCCCcCC
Q 046778           20 LTELNFLSNFNVSYNNLS   37 (147)
Q Consensus        20 ~~~l~~L~~l~ls~N~l~   37 (147)
                      +..+++|+.|++++|+++
T Consensus       169 l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             hcCCCCCCEEECCCCccC
Confidence            333344444444444433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.10  E-value=0.00042  Score=51.73  Aligned_cols=40  Identities=25%  Similarity=0.361  Sum_probs=34.6

Q ss_pred             CccEEECCCCcccccCchhhhcCC--CCCeeecCCCcCCCCCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELN--FLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~--~L~~l~ls~N~l~G~iP~   42 (147)
                      +|+.|||++|++++.  .++..+.  .|++|+|++|.+++.+|.
T Consensus       197 ~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          197 NLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             CCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            488999999999986  4456666  999999999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.94  E-value=0.0006  Score=54.19  Aligned_cols=40  Identities=20%  Similarity=0.121  Sum_probs=22.9

Q ss_pred             ccEEECCCCcccccCchhhhcCC-------CCCeeecCCCcCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELN-------FLSNFNVSYNNLSGPIP   41 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~-------~L~~l~ls~N~l~G~iP   41 (147)
                      |+.||+++|+++|..+..+.++.       .|+.+++++|++.|.+|
T Consensus       235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence            56677777777765544444443       34455555555555555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.89  E-value=0.0011  Score=44.06  Aligned_cols=37  Identities=24%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      +|+.|||++|+|+.--+..|..++.|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4789999999999766666889999999999999663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.79  E-value=0.00021  Score=56.03  Aligned_cols=57  Identities=16%  Similarity=0.092  Sum_probs=36.5

Q ss_pred             CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCCCCCCccc------cccCCccccccc
Q 046778            1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSGPIPDKEQ------FATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~------~~~~~~~~~~gn   57 (147)
                      +|+.|+|++|++++.    +|..+..+++|+.||+++|++++..+..+.      ..++..+.+.+|
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            367788888888776    566667777888888888877665443221      234555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.34  E-value=0.0013  Score=51.38  Aligned_cols=58  Identities=14%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             CccEEECCCCcccccCchhhhc-----CCCCCeeecCCCcCCC----CCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTE-----LNFLSNFNVSYNNLSG----PIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~-----l~~L~~l~ls~N~l~G----~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++|++++..+..+..     .+.|+.|++++|++++    .+|..+ ...++..+.+.+|.
T Consensus       342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            4789999999999887776664     6799999999999986    777665 45677777777774

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.31  E-value=0.0043  Score=47.22  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             ccEEECCCCcccccCchh-hhcCCCCCeeecCCCcCCCCCCC
Q 046778            2 IESLDLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~-~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      |+.|++++|+.-+.||.. +..+++|+.||+++|+|+. +|.
T Consensus       179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~  219 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS  219 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS
T ss_pred             hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh
Confidence            566777766666667654 5777888888888888774 444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.17  E-value=0.00072  Score=54.56  Aligned_cols=58  Identities=9%  Similarity=-0.069  Sum_probs=38.9

Q ss_pred             CccEEECCCCcccc-cCchhhhcCCCCCeeecCCCcCCCCCCCcc--ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSG-RIPPQLTELNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG-~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~   58 (147)
                      +|+.|+|++|++++ .+|..+..+++|+.|++++|++++..+...  .+.++..+.+.+|.
T Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            36778888888877 456666777888888888888765533222  35566666666664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.03  E-value=0.0013  Score=51.04  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=18.0

Q ss_pred             ccEEECCCCcccc----cCchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRNKLSG----RIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N~LsG----~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      |+.|||++|+++.    .++..+..+++|++|||++|+++
T Consensus       157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence            4555555555543    23333344555555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.63  E-value=0.0016  Score=52.53  Aligned_cols=58  Identities=10%  Similarity=-0.003  Sum_probs=37.5

Q ss_pred             CccEEECCCCcccccCchhh-hcCCCCCeeecCCCcCCCCCCCcc--ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQL-TELNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~-~~l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~   58 (147)
                      +|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++..+...  .+.++..+.+.+|+
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            36778888888877666555 567888888888887754433322  34556655555553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.18  E-value=0.0071  Score=48.73  Aligned_cols=39  Identities=23%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             CccEEECCCCccccc-CchhhhcCCCCCeeecCCCcCCCC
Q 046778            1 MIESLDLSRNKLSGR-IPPQLTELNFLSNFNVSYNNLSGP   39 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~-iP~~~~~l~~L~~l~ls~N~l~G~   39 (147)
                      +|+.|||++|.+++. ++..+..+++|+.|++++|++++.
T Consensus       489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            489999999999877 555567899999999999998876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.16  E-value=0.0096  Score=46.08  Aligned_cols=58  Identities=19%  Similarity=0.243  Sum_probs=42.3

Q ss_pred             CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCCCCC----Ccc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSGPIP----DKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G~iP----~~~-~~~~~~~~~~~gn~   58 (147)
                      +|++|||++|+++..    ++..+...++|+.|||++|+++..-.    ..+ ...++..+.+.+|.
T Consensus       184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            478999999999864    46677788899999999999875322    211 23566666777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.96  E-value=0.0088  Score=46.30  Aligned_cols=57  Identities=14%  Similarity=0.113  Sum_probs=37.2

Q ss_pred             CccEEECCCCcccccCchhhh---cCCCCCeeecCCCcCCCC----CCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLT---ELNFLSNFNVSYNNLSGP----IPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~---~l~~L~~l~ls~N~l~G~----iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|+.|+|++|.++...+..+.   .++.|+.|||++|++++.    ++..+ .+.++..+.+.+|
T Consensus       253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            477888888888876655554   467888888888888764    33332 3455555555444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.63  E-value=0.018  Score=40.01  Aligned_cols=36  Identities=11%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             ccEEECCCC-ccccc----CchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRN-KLSGR----IPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N-~LsG~----iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      |++|||++| +++..    +...+...++|++|||++|++.
T Consensus        38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            566666666 66543    3333444566666666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.52  E-value=0.025  Score=39.24  Aligned_cols=39  Identities=21%  Similarity=0.312  Sum_probs=30.9

Q ss_pred             CccEEECCCCccccc----CchhhhcCCCCCeeecCCCcCCCC
Q 046778            1 MIESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNLSGP   39 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l~G~   39 (147)
                      +|++|||++|+++..    +...+...++|++|||++|+++..
T Consensus        66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            478999999999764    455566678999999999988653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=93.80  E-value=0.0095  Score=46.10  Aligned_cols=18  Identities=6%  Similarity=-0.049  Sum_probs=12.4

Q ss_pred             cCCCCCeeecCCCcCCCC
Q 046778           22 ELNFLSNFNVSYNNLSGP   39 (147)
Q Consensus        22 ~l~~L~~l~ls~N~l~G~   39 (147)
                      .+++|+.|++++|++.+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~  267 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNV  267 (362)
T ss_dssp             TCTTCCEEEEESCTTHHH
T ss_pred             CCCCcCEEeCCCCCCchH
Confidence            366777778777776643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.39  E-value=0.012  Score=47.30  Aligned_cols=57  Identities=11%  Similarity=0.077  Sum_probs=36.6

Q ss_pred             CccEEECCCCcccccCchhhhc-CCCCCeeecCCCcCCCCCCCcc--ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTE-LNFLSNFNVSYNNLSGPIPDKE--QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~-l~~L~~l~ls~N~l~G~iP~~~--~~~~~~~~~~~gn~   58 (147)
                      +|+.|||++ ++++..+..++. +++|+.|++++|.+++..+..+  .+.++..+.+.+|+
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~  492 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP  492 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence            366777765 666666666665 7788888888887766544332  34556666666654

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=89.66  E-value=0.48  Score=24.42  Aligned_cols=20  Identities=10%  Similarity=-0.159  Sum_probs=8.5

Q ss_pred             hhhhhhhHHHHHHHHHHHHH
Q 046778           98 WSFGASYVSVILGLFAALWI  117 (147)
Q Consensus        98 ~~~~~~~~v~~~~~~~~~~~  117 (147)
                      .++.++.++++.+++.+.++
T Consensus        14 AGiVvG~v~gv~li~~l~~~   33 (38)
T 2k1k_A           14 VAVIFGLLLGAALLLGILVF   33 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehHHHHHHHHHHHHHHH
Confidence            33444444444434443333

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=88.19  E-value=0.3  Score=34.59  Aligned_cols=36  Identities=8%  Similarity=0.295  Sum_probs=16.5

Q ss_pred             ccEEECCCC-ccccc----CchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRN-KLSGR----IPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N-~LsG~----iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      |++|||++| ++...    |-..+..-+.|+.|+|++|++.
T Consensus        43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            455566553 44321    2222333445555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=88.14  E-value=0.33  Score=33.73  Aligned_cols=35  Identities=9%  Similarity=0.170  Sum_probs=29.0

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNN   35 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~   35 (147)
                      .|+.||||++.++-.=-..+..++.|+.|+|+++.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            47899999998877645567889999999999974

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=87.76  E-value=0.61  Score=34.75  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      +|+.|||++|+++---+..|.++++|+.+++++| ++ .|+..
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~  267 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQR  267 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHH
Confidence            4789999999998655556899999999999998 33 35543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 5e-14
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1   MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSAL 60
            +  LDL  N++ G +P  LT+L FL + NVS+NNL G IP       FD  +Y  N  L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

Query: 61  CGSMIKRKCS 70
           CGS +   C+
Sbjct: 305 CGSPLP-ACT 313

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 2   IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIP 41
           ++ L  + NK+S      L  L  ++  +  +N +S   P
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 5  LDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPD 42
          L L+   L+  +   L +L  +++ ++S+N L    P 
Sbjct: 3  LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.61
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.53
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.34
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.16
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.16
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.12
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.66
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.61
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.59
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.21
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.11
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.02
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.0
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	95.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	95.45
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	90.99
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	90.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	86.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	84.32

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.48  E-value=1.1e-14  Score=108.73  Aligned_cols=68  Identities=43%  Similarity=0.817  Sum_probs=62.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccccCCcCCCCCCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNSALCGSMIKRKC   69 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c   69 (147)
                      +|+.|||++|+|+|.||++++++++|++|||++|+|+|+||+...+.++....+.||+.+||.|++ .|
T Consensus       245 ~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            478999999999999999999999999999999999999998767889999999999999998753 55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.61  E-value=9.1e-09  Score=75.88  Aligned_cols=56  Identities=30%  Similarity=0.462  Sum_probs=43.3

Q ss_pred             ccEEECCCCcccc--cCchhhhcCCCCCeeecCC-CcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSG--RIPPQLTELNFLSNFNVSY-NNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG--~iP~~~~~l~~L~~l~ls~-N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      ++.|||++|+++|  +||+++++|+.|++||+++ |+++|.+|.++ .+.++..+.+.+|
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N  111 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccc
Confidence            6778888888888  5788888888888888886 78888888766 5566666665555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.5e-08  Score=71.42  Aligned_cols=62  Identities=26%  Similarity=0.274  Sum_probs=55.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      .|+.|++++|+|++..|..+..+++|+.|||++|+|+ .+|.+. ....+..+.+.||+..|..
T Consensus       149 ~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            4788999999999988888999999999999999999 899876 6677888889999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.53  E-value=3.9e-08  Score=67.96  Aligned_cols=62  Identities=21%  Similarity=0.306  Sum_probs=38.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |++|||++|++++-.|..|.+++.|+.|+|++|+|++..|..+ .+.++..+.+.||+..|..
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            5666666666666556666666667777777776666555544 3455556666666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2e-07  Score=62.59  Aligned_cols=62  Identities=23%  Similarity=0.302  Sum_probs=51.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      +|+.|+|++|+|+.--|..|..+++|+.|+|++|+|+ .+|... ....+..+.+.||+.-|..
T Consensus        57 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          57 ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             ccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcccCCc
Confidence            4789999999999888888999999999999999998 555543 4456777888899887754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=3.4e-07  Score=59.12  Aligned_cols=54  Identities=28%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      |++||+++|.++ .+|+.++.+++|+.|++++|++++ +|.-..+..+....+.+|
T Consensus        22 L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          22 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred             CCEEECCCCccC-cchhhhhhhhcccccccccccccc-cCccccccccCeEECCCC
Confidence            556666666665 456666666666666666666654 333223444554444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.16  E-value=1e-06  Score=60.56  Aligned_cols=56  Identities=20%  Similarity=0.206  Sum_probs=38.4

Q ss_pred             ccEEECCCCcccccC-chhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRI-PPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~i-P~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +++|||++|++++.+ +..++.++.|+.|++++|++.+..|..+ ....+..+.+.+|
T Consensus        31 l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            567888888887755 4446777888888888888777776655 3455555555555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=5.5e-07  Score=65.29  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=40.1

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccccCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNSALCGS   63 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~~lcg~   63 (147)
                      |+.+++++|++++..|..+..+++|+.||+++|++++..|..+ ...++..+.+.||+.-|..
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            5666777777776666667777777777777777766555443 3455566666677666643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.12  E-value=1.8e-06  Score=55.63  Aligned_cols=53  Identities=19%  Similarity=0.331  Sum_probs=43.5

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +.|||++|+++ .+| .+..++.|++||+++|+++ .+|..+ .+..+..+...+|.
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~   54 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA   54 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccc
Confidence            47999999998 555 4899999999999999998 578755 56777777777774

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4e-06  Score=60.19  Aligned_cols=56  Identities=18%  Similarity=0.145  Sum_probs=37.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      .|+.|||++|++++-.+..|.+++.|++|+|++|+++ .+|....+.++..+.+.+|
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECCSS
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccccccccccccccccc
Confidence            3678888888888766667888888888888888876 3443333444444444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.2e-05  Score=56.45  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=32.3

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      |+.+++++|++++..|..+..++.|+.|++++|++++..|..+ ...++......+|
T Consensus       131 L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            5666777777765555556666667777777776665555433 2334444333333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.6e-05  Score=51.82  Aligned_cols=58  Identities=17%  Similarity=0.105  Sum_probs=46.4

Q ss_pred             CccEEECCCCc-ccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNK-LSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~-LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|++|++++|+ ++.--+..|.+++.|+.|++++|+++.--|..+ ...++..+.+.+|.
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            47889998765 887666779999999999999999998777655 56677777777774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.4e-05  Score=53.59  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=20.8

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      ++.|||++|+++. ||..+..++.|+.||+|+|+++
T Consensus        20 lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~   54 (162)
T d1a9na_          20 DRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR   54 (162)
T ss_dssp             CEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC
T ss_pred             CcEEECCCCCCCc-cCccccccccCCEEECCCCCCC
Confidence            4556666666653 4544455666666666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.61  E-value=4.3e-05  Score=55.25  Aligned_cols=55  Identities=20%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      ++.|++++|.+++..|..+.++++|++|++++|+|+ .+|.++ .+..+..+.+.+|
T Consensus       197 l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred             ccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCC
Confidence            345555666665555555555666666666666655 345443 3444444444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.61  E-value=4.4e-05  Score=55.22  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=44.2

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      .+++|||++|+++.-.+..+.+++.|++|++++|.++...|..+ .+..+..+.+.+|
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            36789999999987555678999999999999999998777655 4555666666555

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.59  E-value=2.7e-05  Score=57.48  Aligned_cols=55  Identities=18%  Similarity=0.175  Sum_probs=38.7

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +++.||+++|++++. + .+..+++|+.|++++|++++ +|.-..++++..+...+|.
T Consensus       308 ~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         308 NLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             TCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSC
T ss_pred             ccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCc
Confidence            367888888888874 3 27788888888888888876 4432245666666666663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=9e-06  Score=54.43  Aligned_cols=59  Identities=24%  Similarity=0.189  Sum_probs=42.8

Q ss_pred             CccEEECCCCccccc--CchhhhcCCCCCeeecCCCcCCCCCCCc-cccccCCccccccccC
Q 046778            1 MIESLDLSRNKLSGR--IPPQLTELNFLSNFNVSYNNLSGPIPDK-EQFATFDDRSYKGNSA   59 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~--iP~~~~~l~~L~~l~ls~N~l~G~iP~~-~~~~~~~~~~~~gn~~   59 (147)
                      .|+.||||+|+++.-  ++..+..+++|+.||+++|+++.--+-. +....+....+.||+-
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence            478999999999863  5566888999999999999987633211 1334456666777754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=4.1e-05  Score=51.11  Aligned_cols=56  Identities=16%  Similarity=0.251  Sum_probs=42.2

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn~   58 (147)
                      .|+.||||+|+++ .++ .+..++.|++|++++|+++.-.|... .+..+..+.+.+|.
T Consensus        42 ~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          42 QFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS   98 (162)
T ss_dssp             CCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred             cCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecccc
Confidence            4789999999998 454 47889999999999999987544332 46667777777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.34  E-value=0.0001  Score=51.10  Aligned_cols=54  Identities=19%  Similarity=0.278  Sum_probs=37.8

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      +|+.|++++|.+++..  .++++++|+.||+++|++++ +|.-..+.++..+.+.+|
T Consensus       152 ~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNN  205 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccch--hhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCC
Confidence            3678888888887543  37788888888888888876 443225566666666666

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00013  Score=50.78  Aligned_cols=43  Identities=16%  Similarity=0.098  Sum_probs=36.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      ++++|||++|+++.--+..|.++++|++|++++|.+...+|..
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~   72 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD   72 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSS
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecc
Confidence            4789999999998654556899999999999999998877653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.21  E-value=0.00017  Score=49.68  Aligned_cols=54  Identities=22%  Similarity=0.281  Sum_probs=29.1

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      +|++|+|++|.+++ +| .++.+++|+.|++++|++++ +|.-..+.++....+.+|
T Consensus        69 ~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          69 NVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTS
T ss_pred             CCCEEeCCCccccC-cc-ccccCccccccccccccccc-cccccccccccccccccc
Confidence            35666777776665 33 24566667777777776664 332213334444444333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.19  E-value=0.00021  Score=51.68  Aligned_cols=51  Identities=25%  Similarity=0.379  Sum_probs=40.0

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +|++|||++|+|+ .||..   +++|+.|++++|+++ .+|..  ..++..+.+.+|+
T Consensus       285 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~--~~~L~~L~L~~N~  335 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL--PQNLKQLHVEYNP  335 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSC
T ss_pred             CCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc--cCCCCEEECcCCc
Confidence            4789999999998 68864   567889999999998 68864  3456666777775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.11  E-value=0.00026  Score=51.95  Aligned_cols=52  Identities=21%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             cEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            3 ESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         3 ~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      +.++++.|++++  +..+..+..++.+++++|++++..| -..+.++..+.+.+|
T Consensus       288 ~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n  339 (384)
T d2omza2         288 TNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN  339 (384)
T ss_dssp             SEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred             cccccccccccc--ccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCC
Confidence            345555555554  2234455555555555555554322 113344444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.07  E-value=0.00033  Score=50.58  Aligned_cols=38  Identities=26%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      +++.|||++|+|+ ++|+.   ++.|++|++++|+++ .+|..
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~   76 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL   76 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc
Confidence            3678899999987 58864   457888888888888 77764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.07  E-value=5.2e-05  Score=52.20  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=38.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|+.|||++|+++ .|+ .+..+++|+.|++++|+++ .+|... ....+..+.+.+|
T Consensus        49 ~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          49 ACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             TCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEE
T ss_pred             ccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccc
Confidence            4788999999988 565 5888999999999999886 456432 2234555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.02  E-value=0.0003  Score=48.33  Aligned_cols=53  Identities=25%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      ++.++++.|.+++  +..+..++.|+.+++++|++++..| -..+.++..+.+.+|
T Consensus       136 l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         136 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccc-ccCCCCCCEEECCCC
Confidence            5566677776664  3345566677777777777665322 113445555555555

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.00  E-value=0.00041  Score=47.95  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=25.3

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCC
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSG   38 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G   38 (147)
                      +|+.|||++|++++ +|. +.++++|+.|++++|++++
T Consensus       174 ~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         174 KLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             TCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred             cceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC
Confidence            36777777777775 443 6777777777777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.77  E-value=0.00085  Score=45.52  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=15.9

Q ss_pred             ccEEECCCCcccccCchhhhcCCCCCeeecCCCcC
Q 046778            2 IESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNL   36 (147)
Q Consensus         2 L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l   36 (147)
                      |++|||++|++++..|  +++++.|+.|++++|.+
T Consensus        64 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          64 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cCcCccccccccCccc--ccCCccccccccccccc
Confidence            4455555555554221  44555555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.63  E-value=0.001  Score=45.07  Aligned_cols=55  Identities=27%  Similarity=0.401  Sum_probs=41.4

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn~   58 (147)
                      +|+.|++++|+++. +| .+..++.|+.|++++|++++..| -..+.++..+.+.+|.
T Consensus       129 ~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         129 NLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNK  183 (199)
T ss_dssp             TCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             hhHHhhhhhhhhcc-cc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCC
Confidence            47889999999874 44 58889999999999999987433 2256677777777763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.29  E-value=0.00011  Score=50.57  Aligned_cols=55  Identities=20%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCccccccCCccccccc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~~~~~~~~~~~~~gn   57 (147)
                      +|+.|||++|+++ .||.....+..|+.|++++|+++. ++.-..+.++..+.+.+|
T Consensus        71 ~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_          71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HHHHHHHHHSSEEEESEE
T ss_pred             cccChhhcccccc-cccccccccccccccccccccccc-cccccccccccccccccc
Confidence            3667777777765 456555555566777777776664 222113344444444444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0064  Score=41.74  Aligned_cols=35  Identities=14%  Similarity=0.249  Sum_probs=22.7

Q ss_pred             ECCCCcccccCchh-hhcCCCCCeeecCCCcCCCCCCC
Q 046778            6 DLSRNKLSGRIPPQ-LTELNFLSNFNVSYNNLSGPIPD   42 (147)
Q Consensus         6 dLs~N~LsG~iP~~-~~~l~~L~~l~ls~N~l~G~iP~   42 (147)
                      ++++|+++ .||.. +.++++|+.||+++|+++ .+|.
T Consensus       183 ~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         183 LSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS  218 (242)
T ss_dssp             CTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCS
T ss_pred             cccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCH
Confidence            45566666 35543 567777777777777776 4554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0012  Score=47.32  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             CccEEECCCCccccc-CchhhhcCCCCCeeecCCCcCCCCCCCcc-ccccCCcccccc
Q 046778            1 MIESLDLSRNKLSGR-IPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDRSYKG   56 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~-iP~~~~~l~~L~~l~ls~N~l~G~iP~~~-~~~~~~~~~~~g   56 (147)
                      +|++|||+++.+++. ++..+..+++|++|+++++++++..+..+ +..++..+.+.+
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            467778877777655 34445667777888887777766555443 334444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0076  Score=42.91  Aligned_cols=57  Identities=19%  Similarity=0.206  Sum_probs=41.5

Q ss_pred             CccEEECCCC-cccccCchhhhcCCCCCeeecCC-CcCCCCCCCcc-ccccCCccccccc
Q 046778            1 MIESLDLSRN-KLSGRIPPQLTELNFLSNFNVSY-NNLSGPIPDKE-QFATFDDRSYKGN   57 (147)
Q Consensus         1 ~L~~LdLs~N-~LsG~iP~~~~~l~~L~~l~ls~-N~l~G~iP~~~-~~~~~~~~~~~gn   57 (147)
                      +|++|||+++ .+++..+..++.++.|++|++++ +++++.....+ +...+..+...|.
T Consensus       176 ~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4789999985 68888889999999999999999 56766544433 3445555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0038  Score=46.13  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=39.0

Q ss_pred             CccEEECCCCccccc----Cchhhh-cCCCCCeeecCCCcCCCC----CCCcc-ccccCCcccccccc
Q 046778            1 MIESLDLSRNKLSGR----IPPQLT-ELNFLSNFNVSYNNLSGP----IPDKE-QFATFDDRSYKGNS   58 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~----iP~~~~-~l~~L~~l~ls~N~l~G~----iP~~~-~~~~~~~~~~~gn~   58 (147)
                      +|+.||||+|+++.+    ++..+. ..+.|+.|++++|+++..    ++..+ ..+++..+.+.+|.
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence            478899999998764    444444 356799999999998753    22222 34566666777663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0072  Score=39.58  Aligned_cols=43  Identities=23%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             CccEEECCCCcccccCchhhhcCCCCCeeecCCCcCCCCCCCc
Q 046778            1 MIESLDLSRNKLSGRIPPQLTELNFLSNFNVSYNNLSGPIPDK   43 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP~~~~~l~~L~~l~ls~N~l~G~iP~~   43 (147)
                      +|+.||||+|+++---+-.......|+.+++++|.++......
T Consensus        92 ~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          92 NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             cccccccccCccccchhhhhhhccccceeecCCCCcCcCcccc
Confidence            4789999999999643334445567999999999999877653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.012  Score=43.36  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=19.7

Q ss_pred             ccEEECCCCccccc----Cchhhhc-CCCCCeeecCCCcCCC
Q 046778            2 IESLDLSRNKLSGR----IPPQLTE-LNFLSNFNVSYNNLSG   38 (147)
Q Consensus         2 L~~LdLs~N~LsG~----iP~~~~~-l~~L~~l~ls~N~l~G   38 (147)
                      |+.|||++|.++..    +...+.. ...|+.|++++|+++.
T Consensus        57 L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          57 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             CCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence            66677777766532    1111211 2356677777766654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.03  E-value=0.02  Score=41.33  Aligned_cols=36  Identities=11%  Similarity=0.221  Sum_probs=22.7

Q ss_pred             ccEEECCCCccccc-----CchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRNKLSGR-----IPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N~LsG~-----iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      |+.|+|++|+++..     +...+..++.|+.|++++|+++
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             hcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence            56777777776542     2334556677777777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.99  E-value=0.073  Score=34.62  Aligned_cols=36  Identities=8%  Similarity=0.295  Sum_probs=20.4

Q ss_pred             ccEEECCCC-ccccc----CchhhhcCCCCCeeecCCCcCC
Q 046778            2 IESLDLSRN-KLSGR----IPPQLTELNFLSNFNVSYNNLS   37 (147)
Q Consensus         2 L~~LdLs~N-~LsG~----iP~~~~~l~~L~~l~ls~N~l~   37 (147)
                      |+.|||+++ .++..    +-..+...+.|+.|++++|.+.
T Consensus        17 L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          17 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            566777653 34433    2223445566777777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.09  E-value=0.068  Score=38.38  Aligned_cols=35  Identities=20%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             ccEEECCCCccccc----CchhhhcCCCCCeeecCCCcC
Q 046778            2 IESLDLSRNKLSGR----IPPQLTELNFLSNFNVSYNNL   36 (147)
Q Consensus         2 L~~LdLs~N~LsG~----iP~~~~~l~~L~~l~ls~N~l   36 (147)
                      |+.|||++|.++..    +...+...++|+.|++++|++
T Consensus        95 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          95 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccchhhhhcccccchheecccccc
Confidence            56677777766654    333444566677777776665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.38  E-value=0.22  Score=32.10  Aligned_cols=39  Identities=23%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             CccEEECCCCcccccCc----hhhhcCCCCCeeecCCCcCCCC
Q 046778            1 MIESLDLSRNKLSGRIP----PQLTELNFLSNFNVSYNNLSGP   39 (147)
Q Consensus         1 ~L~~LdLs~N~LsG~iP----~~~~~l~~L~~l~ls~N~l~G~   39 (147)
                      .|++|+|++|.++-.-.    ..+...+.|+.|++++|+++..
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            47899999999985422    3455678999999999988653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.32  E-value=0.32  Score=31.05  Aligned_cols=39  Identities=13%  Similarity=0.253  Sum_probs=25.6

Q ss_pred             CccEEECCC-CcccccCc----hhhhcCCCCCeeecCCCcCCCC
Q 046778            1 MIESLDLSR-NKLSGRIP----PQLTELNFLSNFNVSYNNLSGP   39 (147)
Q Consensus         1 ~L~~LdLs~-N~LsG~iP----~~~~~l~~L~~l~ls~N~l~G~   39 (147)
                      +|++|+|++ |+++-..-    ..+...+.|++|++++|+++..
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~   61 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP   61 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHH
Confidence            467888886 55654422    2344677888888888876543