Citrus Sinensis ID: 046783

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830

MADHRHHRPQRISVPPRAANTNTIINTPSTRYPSFSYPPVTPTPATSGHRPKSNSNSKSSLQFLILILFSLRSLYSLLPFLRSSPSFSLFPFTFLVSLLSFLLSLAFSLFSFPSSKRLFNPKQHQNPLPIFPLNKSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGRFVAEGRKNGSFTDWSKFSKVGGFSCMFVGLFLLSVSWDRTECFPLSSSFLGKWSLYGEHCVRLWPMLLPFLSGFLGCYERVSMNWGAIRQLSQKQVRLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVCTIVLELFYYPELSLWGLLLCVLLLYFAVRELDPVYSNYHELGFESSESFSSLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLIFFHEEHHHAHGGVCSHSHSHSHSHPHHHHQHSHDHEGHGKRQECISISHESNEKSCSSHDHHHCTGHTAHHHGRRDHCDSTLKHEHTHGYDDQGLGDQHSHRDHTHKHNNHYHHHPANHNFHAHEHDDHDHHHHADHHEPLKHDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTLQVECVR

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccEEcccccccEEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEEEc

cccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHEEEEEEEEcccccccccccHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccEEEcccEEEEEcccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEccc

madhrhhrpqrisvppraantntiintpstrypsfsyppvtptpatsghrpksnsnsksSLQFLILILFSLRSLYsllpflrsspsfslfpFTFLVSLLSFLLSLAFSlfsfpsskrlfnpkqhqnplpifplnkSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGRFVaegrkngsftdwskfskvggfSCMFVGLFLLSvswdrtecfplsssflgkwslygehcvrlwpmllpflsgflgcyervSMNWGAIRQLSQKQVRLISLFYTTVLLSVPALVSWIVFenygdgdensisFANLAWPLANTVVFGVLLSenysdqkfvisADFQREFVVTLVCTIVLELFYYPELSLWGLLLCVLLLYFAVReldpvysnyhelgfessesfSSLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYisrlpansqfnygrgRFEVLSGYTNAVFLVLVGALIVLEsferildpqeistnsLLTVSIGGLLVNVIGLIFFheehhhahggvcshshshshshphhhhqhshdheghgkrqecisishesnekscsshdhhhctghtahhhgrrdhcdstlkhehthgyddqglgdqhshrdhthkhnnhyhhhpanhnfhahehddhdhhhhadhheplkhdrrhidhnMEGIFLHVLADTMGSVGVVISTLLIKYkgwlvadpacSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKIsgvhgiqnlhlwsftstdvvgtlnlhvsseaDMVSIKAQVSHMLsdagikdlTLQVECVR

madhrhhrpqrisvppraantntiintpstrypsfSYPPVTPTPAtsghrpksnsnsKSSLQFLILILFSLRSLYSLLPFLRSSPSFSLFPFTFLVSLLSFLLSLAFSLFSFPSSKRLFNPKQHQNPLPIFPLNKSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGRFVAEGRKNGSFTDWSKFSKVGGFSCMFVGLFLLSVSWDRTECFPLSSSFLGKWSLYGEHCVRLWPMLLPFLSGFLGCYERVSMNWGAIRQLSQKQVRLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVCTIVLELFYYPELSLWGLLLCVLLLYFAVRELDPVYSNYHELGFESSESFSSLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLIFFHEEHHHAHGGVCSHSHSHSHSHPHHHHQHSHDHEGHGKRQECISISHESNEKSCSSHDHHHCTGHTAHHHGRRDHCDSTLKHEHTHGYDDQGLGDQHSHRDHTHKHNNHYHHHPANHNFHAHEHDDHDHHHHADHHEPLKHDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLsdagikdltlqvecvr

MADHRHHRPQRISVPPRAANTNTIINTPSTRYPSFSYPPVTPTPATSGHRPKSNSNsksslqflililfslrslysllpflrsspsfslfpftflvsllsfllslafslfsfpssKRLFNPKQHQNPLPIFPLNKSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGRFVAEGRKNGSFTDWSKFSKVGGFSCMFVGLFLLSVSWDRTECFPLSSSFLGKWSLYGEHCVRLWPMLLPFLSGFLGCYERVSMNWGAIRQLSQKQVRLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVCTIVLELFYYPElslwglllcvlllYFAVRELDPVYSNYHELGfessesfssLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLIffheehhhahggvcshshshshshphhhhqhshdheghgKRQECISISHESNEKSCSShdhhhctghtahhhgrrdhcDSTLKHEHTHGYDDQGLGDQhshrdhthkhnnhyhhhpanhnfhahehddhdhhhhadhhePLKHDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACsifisllivssvipllRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTLQVECVR

************************************************************LQFLILILFSLRSLYSLLPFLRSSPSFSLFPFTFLVSLLSFLLSLAFSLFSFPSSKRLFNPKQHQNPLPIFPLNKSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGRFVAEGRKNGSFTDWSKFSKVGGFSCMFVGLFLLSVSWDRTECFPLSSSFLGKWSLYGEHCVRLWPMLLPFLSGFLGCYERVSMNWGAIRQLSQKQVRLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVCTIVLELFYYPELSLWGLLLCVLLLYFAVRELDPVYSNYHELGFESSESFSSLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLIFFHEEHHHAHGGV**************************************************************************************************************************************IDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTLQV****

*************VP************************************************LILILFSLRSLYSLLPFLRSSPSFSLFPFTFLVSLLSFLLSLAFSLFS******************IFPLNKSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGRFVAEGRKNG*****SKFSKVGGFSCMFVGLFLLSVSWDRTECFPLSSSFLGKWSLYGEHCVRLWPMLLPFLSGFLGCYER***************VRLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVCTIVLELFYYPELSLWGLLLCVLLLYFAVRELD********************************KSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLIFFHEEH****************************************************************************************************************************************************IFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTLQVECVR

***********ISVPPRAANTNTIINTPSTRYPSFSYPPV*****************KSSLQFLILILFSLRSLYSLLPFLRSSPSFSLFPFTFLVSLLSFLLSLAFSLFSFPSSKRLFNPKQHQNPLPIFPLNKSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGRFVAEGRKNGSFTDWSKFSKVGGFSCMFVGLFLLSVSWDRTECFPLSSSFLGKWSLYGEHCVRLWPMLLPFLSGFLGCYERVSMNWGAIRQLSQKQVRLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVCTIVLELFYYPELSLWGLLLCVLLLYFAVRELDPVYSNYHELGFESSESFSSLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLIFFHEEHHH**********************************ECISIS*******************************STLKHEHTHGYDDQGLGDQHSHRDHTHKHNNHYHHHPANHNFHAHE*****************HDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTLQVECVR

*************VP*R*******INTPSTRYPSFSYPPVT*****************SSLQFLILILFSLRSLYSLLPFLRSSPSFSLFPFTFLVSLLSFLLSLAFSLFSFPSSKRL*****HQNPLPIFPLNKSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGRFVAEGRKNGSFTDWSKFSKVGGFSCMFVGLFLLSVSWDRTECFPLSSSFLGKWSLYGEHCVRLWPMLLPFLSGFLGCYERVSMNWGAIRQLSQKQVRLISLFYTTVLLSVPALVSWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYSDQKFVISADFQREFVVTLVCTIVLELFYYPELSLWGLLLCVLLLYFAVRELDPVYSNYHELGFESSESFSSLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLIFFHE************************************************************************************************************************************************DHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTLQVECVR

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		830	2.2.26 [Sep-21-2011]
Q9SI03		300	Metal tolerance protein 1	no	no	0.175	0.486	0.897	7e-71
Q8H329		316	Metal tolerance protein 8	yes	no	0.209	0.550	0.761	5e-64
Q9HGQ3		732	Probable zinc transporter	yes	no	0.462	0.524	0.330	3e-48
O13918		387	Zinc homeostasis factor 1	no	no	0.432	0.927	0.267	3e-37
Q8TAD4		765	Zinc transporter 5 OS=Hom	yes	no	0.204	0.222	0.453	8e-36
Q8R4H9		761	Zinc transporter 5 OS=Mus	yes	no	0.196	0.214	0.457	2e-35
Q5ZLF4		770	Zinc transporter 5 OS=Gal	yes	no	0.202	0.218	0.412	1e-34
P20107		442	Zinc/cadmium resistance p	yes	no	0.438	0.823	0.281	4e-33
Q6DG36		775	Zinc transporter 5 OS=Dan	yes	no	0.155	0.166	0.482	2e-32
Q28CE7		777	Zinc transporter 5 OS=Xen	yes	no	0.206	0.220	0.416	7e-32

>sp\|Q9SI03\|MTP12_ARATH Metal tolerance protein 12 OS=Arabidopsis thaliana GN=MTP12 PE=3 SV=1	Back alignment and function desciption

 Score =  269 bits (687), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 131/146 (89%), Positives = 138/146 (94%)

Query: 392 FESSESFSSLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHM 451
            ES ESFS++ MKPIRHILSE+KSRKIALFLLINT YMVVEFVAGFMSNSLGLISDACHM
Sbjct: 1   MESPESFSTMFMKPIRHILSEKKSRKIALFLLINTAYMVVEFVAGFMSNSLGLISDACHM 60

Query: 452 LFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERIL 511
           LFDCAALAIGLYASYISRLPAN Q+NYGRGRFEVLSGY NAVFLVLVGALIVLES ERIL
Sbjct: 61  LFDCAALAIGLYASYISRLPANHQYNYGRGRFEVLSGYVNAVFLVLVGALIVLESIERIL 120

Query: 512 DPQEISTNSLLTVSIGGLLVNVIGLI 537
           DPQEISTNSLL VS+GGLLVN++GLI
Sbjct: 121 DPQEISTNSLLVVSVGGLLVNIVGLI 146

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8H329\|MTP8_ORYSJ Metal tolerance protein 8 OS=Oryza sativa subsp. japonica GN=MTP8 PE=2 SV=2	Back alignment and function description

>sp\|Q9HGQ3\|CIS4_SCHPO Probable zinc transporter cis4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cis4 PE=1 SV=1	Back alignment and function description

>sp\|O13918\|ZHF1_SCHPO Zinc homeostasis factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zhf1 PE=2 SV=3	Back alignment and function description

>sp\|Q8TAD4\|ZNT5_HUMAN Zinc transporter 5 OS=Homo sapiens GN=SLC30A5 PE=1 SV=1	Back alignment and function description

>sp\|Q8R4H9\|ZNT5_MOUSE Zinc transporter 5 OS=Mus musculus GN=Slc30a5 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZLF4\|ZNT5_CHICK Zinc transporter 5 OS=Gallus gallus GN=SLC30A5 PE=2 SV=1	Back alignment and function description

>sp\|P20107\|ZRC1_YEAST Zinc/cadmium resistance protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRC1 PE=1 SV=2	Back alignment and function description

>sp\|Q6DG36\|ZNT5_DANRE Zinc transporter 5 OS=Danio rerio GN=slc30a5 PE=2 SV=1	Back alignment and function description

>sp\|Q28CE7\|ZNT5_XENTR Zinc transporter 5 OS=Xenopus tropicalis GN=slc30a5 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		830
22325475		798	Cation efflux family protein [Arabidopsi	0.916	0.953	0.611	0.0
296087734		1092	unnamed protein product [Vitis vinifera]	0.704	0.535	0.692	0.0
225452588		807	PREDICTED: uncharacterized protein LOC10	0.621	0.639	0.735	0.0
224134032		765	metal tolerance protein [Populus trichoc	0.666	0.722	0.610	1e-175
449520185		818	PREDICTED: uncharacterized LOC101207849	0.642	0.651	0.679	1e-173
449459496		820	PREDICTED: uncharacterized protein LOC10	0.642	0.65	0.679	1e-173
410129761		931	hypothetical protein [Beta vulgaris]	0.448	0.399	0.679	1e-147
357141367		795	PREDICTED: uncharacterized protein LOC10	0.696	0.727	0.533	1e-144
242081473		797	hypothetical protein SORBIDRAFT_07g02063	0.707	0.736	0.529	1e-142
297835762		580	hypothetical protein ARALYDRAFT_899269 [	0.481	0.689	0.700	1e-139

>gi\|22325475\|ref\|NP_178539.2\| Cation efflux family protein [Arabidopsis thaliana] gi\|330250755\|gb\|AEC05849.1\| Cation efflux family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/845 (61%), Positives = 587/845 (69%), Gaps = 84/845 (9%)

Query: 8   RPQRISVP-PRAANTNTIINTPSTRYPSFSYPPVTPTPATS----GHRPKSNSNSKSSLQ 62
           RP R+SVP P    T          YPSF Y P TPTP+ +        +S   SKSSL 
Sbjct: 13  RPNRLSVPQPTIGRT----------YPSFPYTP-TPTPSKTRLSSSSSYRSIHGSKSSLS 61

Query: 63  FLILILFSLRSLYSLLPFLRSSPSFSLFPFTFLVSLLSFLLSLAFSLFSF--PSSK---- 116
           FL LILFSLRSLYSLLPFLRSSPSFSLFPF+FLVSLLSFL SL+F++ S   PS K    
Sbjct: 62  FLFLILFSLRSLYSLLPFLRSSPSFSLFPFSFLVSLLSFLFSLSFTIISSFSPSKKDPFL 121

Query: 117 -RLFNPKQHQNPLPIFPLNKSLLAKSFLLACVFLLRFQALRYCGTAAMILAEISGNVAGR 175
            RL N              K LLAKSFLLA VFLLRFQALRYCG AAMILAE+SG V+ R
Sbjct: 122 LRLQNRSFSSISSLSSSQIKLLLAKSFLLAFVFLLRFQALRYCGAAAMILAELSGTVSAR 181

Query: 176 FVAEGRKNGSFTDWS----KFSKVGGFSCMFVGLFLLSVSWDRTECFPLSSSF--LGKWS 229
            +        F+D      + SKV GF  +F GL LLS+SWDR +CFP SSS    G W 
Sbjct: 182 VL--------FSDTGGIGVRSSKVRGFCVLFAGLLLLSISWDRVDCFPFSSSVESWGFWI 233

Query: 230 LYGEHCVRLWPMLLPFLSGFLGCYERVSMNWGAIRQLSQKQVRLISLFYTTVLLSVPALV 289
              E+C+R+WP+LLPFLSGFLGCYE+VS+NW  I+QL QK+VRL+SLF TTVLL    L 
Sbjct: 234 YPKENCLRIWPLLLPFLSGFLGCYEKVSVNWNEIKQLDQKRVRLLSLFLTTVLLF--PLA 291

Query: 290 SWIVFENYGDGDENSISFANLAWPLANTVVFGVLLSENYS--DQKFVISADFQREFVVTL 347
            W  F + G GD+ S+SF NL WPLANTVVFGVLLSENY+          D +REF+VT 
Sbjct: 292 IWSFFFS-GSGDD-SVSFGNLGWPLANTVVFGVLLSENYNDDKFSSSKKKDSEREFLVTF 349

Query: 348 VCTIVLELFYYPELSLWGLLLCVLLLYFAVRELDPVYSNYHELGFESSESFSSLIMKPIR 407
           +CTIVLELFY+PELSLWGLLLC LLLY AVREL+ VYS+Y E+G ES ESFS++ MKPIR
Sbjct: 350 LCTIVLELFYFPELSLWGLLLCGLLLYIAVRELESVYSDYQEIGMESPESFSTMFMKPIR 409

Query: 408 HILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYI 467
           HILSE+KSRKIALFLLINT YMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYI
Sbjct: 410 HILSEKKSRKIALFLLINTAYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYI 469

Query: 468 SRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIG 527
           SRLPAN Q+NYGRGRFEVLSGY NAVFLVLVGALIVLES ERILDPQEISTNSLL VS+G
Sbjct: 470 SRLPANHQYNYGRGRFEVLSGYVNAVFLVLVGALIVLESIERILDPQEISTNSLLVVSVG 529

Query: 528 GLLVNVIGLIFFHEEHHHAH---GGVCSHSHSHSHSHPHHHHQHSHDHEGHGKRQECISI 584
           GLLVN++GLIFFHEEHHHAH   G   SHSH         HHQHS  H+           
Sbjct: 530 GLLVNIVGLIFFHEEHHHAHGGSGCTHSHSHQSHSHKNEEHHQHSDSHK----------- 578

Query: 585 SHESNEKSCSSHDHHHCTGHTAHHHGRRDHCDSTLKHEHTHGYDDQGLGDQHSHRDHTHK 644
                      H+ HH       H     H +      H H +  +     H   +H H+
Sbjct: 579 -----------HEEHH------QHSDSHKHEEHHEHDHHHHSHSHKHEECNH---NHDHE 618

Query: 645 HNNHYHHHPANHNFHAHEHDDHDHHHHADHHEPLKHDRRHIDHNMEGIFLHVLADTMGSV 704
           H +H H+H   ++ H H  D          H       RHIDHNMEGIFLHVLADTMGSV
Sbjct: 619 HQSHSHNHEECNHNHDHHSDHQPEKSEKKEH-------RHIDHNMEGIFLHVLADTMGSV 671

Query: 705 GVVISTLLIKYKGWLVADPACSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETL 764
           GVVISTLLIKYKGWLVADPA SIFIS+LI++SVIPLLRNSAEILLQRV RAH  DLKE +
Sbjct: 672 GVVISTLLIKYKGWLVADPASSIFISILIIASVIPLLRNSAEILLQRVPRAHRQDLKEAM 731

Query: 765 NDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEADMVSIKAQVSHMLSDAGIKDLTL 824
            +++K  GV  IQ LH+WSFT++DVV TL+L VS+++D    K QVS +L DAG+KD TL
Sbjct: 732 RNILKTKGVCSIQRLHVWSFTNSDVVATLHLLVSADSDKTDTKLQVSRLLEDAGVKDWTL 791

Query: 825 QVECV 829
           QVE V
Sbjct: 792 QVESV 796

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296087734\|emb\|CBI34990.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225452588\|ref\|XP_002280912.1\| PREDICTED: uncharacterized protein LOC100252487 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224134032\|ref\|XP_002327739.1\| metal tolerance protein [Populus trichocarpa] gi\|222836824\|gb\|EEE75217.1\| metal tolerance protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449520185\|ref\|XP_004167114.1\| PREDICTED: uncharacterized LOC101207849 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449459496\|ref\|XP_004147482.1\| PREDICTED: uncharacterized protein LOC101207849 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|410129761\|dbj\|BAM64839.1\| hypothetical protein [Beta vulgaris]	Back alignment and taxonomy information

>gi\|357141367\|ref\|XP_003572199.1\| PREDICTED: uncharacterized protein LOC100826248 [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|242081473\|ref\|XP_002445505.1\| hypothetical protein SORBIDRAFT_07g020630 [Sorghum bicolor] gi\|241941855\|gb\|EES15000.1\| hypothetical protein SORBIDRAFT_07g020630 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|297835762\|ref\|XP_002885763.1\| hypothetical protein ARALYDRAFT_899269 [Arabidopsis lyrata subsp. lyrata] gi\|297331603\|gb\|EFH62022.1\| hypothetical protein ARALYDRAFT_899269 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		830
TAIR\|locus:2052311		300	AT2G04620 [Arabidopsis thalian	0.165	0.456	0.912	4.5e-107
MGI\|MGI:1916298		761	Slc30a5 "solute carrier family	0.180	0.197	0.437	8.7e-54
UNIPROTKB\|I3LQL7		765	LOC100737089 "Uncharacterized	0.186	0.202	0.432	4.2e-53
RGD\|1306931		760	Slc30a5 "solute carrier family	0.180	0.197	0.457	1.6e-52
UNIPROTKB\|E1B955		769	SLC30A5 "Uncharacterized prote	0.186	0.201	0.432	3.7e-52
ZFIN\|ZDB-GENE-040718-6		775	slc30a5 "solute carrier family	0.162	0.174	0.451	4.5e-52
UNIPROTKB\|Q8TAD4		765	SLC30A5 "Zinc transporter 5" [	0.186	0.202	0.425	1.3e-51
UNIPROTKB\|F1Q2B9		766	SLC30A5 "Uncharacterized prote	0.186	0.202	0.425	1.4e-51
UNIPROTKB\|F1N8U2		737	SLC30A5 "Zinc transporter 5" [	0.162	0.183	0.466	2.4e-51
FB\|FBgn0037875		366	CG6672 [Drosophila melanogaste	0.156	0.355	0.469	2.6e-51

TAIR\|locus:2052311 AT2G04620 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 632 (227.5 bits), Expect = 4.5e-107, Sum P(2) = 4.5e-107
 Identities = 125/137 (91%), Positives = 131/137 (95%)

Query:   401 LIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAI 460
             + MKPIRHILSE+KSRKIALFLLINT YMVVEFVAGFMSNSLGLISDACHMLFDCAALAI
Sbjct:    10 MFMKPIRHILSEKKSRKIALFLLINTAYMVVEFVAGFMSNSLGLISDACHMLFDCAALAI 69

Query:   461 GLYASYISRLPANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNS 520
             GLYASYISRLPAN Q+NYGRGRFEVLSGY NAVFLVLVGALIVLES ERILDPQEISTNS
Sbjct:    70 GLYASYISRLPANHQYNYGRGRFEVLSGYVNAVFLVLVGALIVLESIERILDPQEISTNS 129

Query:   521 LLTVSIGGLLVNVIGLI 537
             LL VS+GGLLVN++GLI
Sbjct:   130 LLVVSVGGLLVNIVGLI 146

GO:0006812 "cation transport" evidence=IEA;ISS

GO:0008324 "cation transmembrane transporter activity" evidence=IEA;ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI\|MGI:1916298 Slc30a5 "solute carrier family 30 (zinc transporter), member 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LQL7 LOC100737089 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1306931 Slc30a5 "solute carrier family 30 (zinc transporter), member 5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B955 SLC30A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040718-6 slc30a5 "solute carrier family 30 (zinc transporter), member 5" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TAD4 SLC30A5 "Zinc transporter 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q2B9 SLC30A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8U2 SLC30A5 "Zinc transporter 5" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0037875 CG6672 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H329	MTP8_ORYSJ	No assigned EC number	0.7613	0.2096	0.5506	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		830
COG1230		296	COG1230, CzcD, Co/Zn/Cd efflux system component [I	3e-37
TIGR01297		268	TIGR01297, CDF, cation diffusion facilitator famil	5e-37
TIGR01297		268	TIGR01297, CDF, cation diffusion facilitator famil	2e-30
COG1230		296	COG1230, CzcD, Co/Zn/Cd efflux system component [I	7e-29
pfam01545		273	pfam01545, Cation_efflux, Cation efflux family	4e-27
PRK03557		312	PRK03557, PRK03557, zinc transporter ZitB; Provisi	8e-22
COG0053		304	COG0053, MMT1, Predicted Co/Zn/Cd cation transport	2e-21
pfam01545		273	pfam01545, Cation_efflux, Cation efflux family	5e-18
PRK03557		312	PRK03557, PRK03557, zinc transporter ZitB; Provisi	9e-10
pfam12782		312	pfam12782, Innate_immun, Invertebrate innate immun	4e-06
COG0053		304	COG0053, MMT1, Predicted Co/Zn/Cd cation transport	8e-06
PRK13263		206	PRK13263, ureE, urease accessory protein UreE; Pro	1e-05
pfam05403		218	pfam05403, Plasmodium_HRP, Plasmodium histidine-ri	5e-05
PRK13263		206	PRK13263, ureE, urease accessory protein UreE; Pro	6e-05
pfam12782		312	pfam12782, Innate_immun, Invertebrate innate immun	2e-04
PRK10019		279	PRK10019, PRK10019, nickel/cobalt efflux protein R	2e-04
pfam10986		161	pfam10986, DUF2796, Protein of unknown function (D	3e-04
pfam04592		238	pfam04592, SelP_N, Selenoprotein P, N terminal reg	3e-04
pfam12782		312	pfam12782, Innate_immun, Invertebrate innate immun	4e-04
pfam05403		218	pfam05403, Plasmodium_HRP, Plasmodium histidine-ri	6e-04
PRK10019		279	PRK10019, PRK10019, nickel/cobalt efflux protein R	9e-04
PRK13263		206	PRK13263, ureE, urease accessory protein UreE; Pro	0.001
PRK13263		206	PRK13263, ureE, urease accessory protein UreE; Pro	0.001
COG4531		318	COG4531, ZnuA, ABC-type Zn2+ transport system, per	0.001
PRK09545		311	PRK09545, znuA, high-affinity zinc transporter per	0.001
pfam04592		238	pfam04592, SelP_N, Selenoprotein P, N terminal reg	0.002
pfam05403		218	pfam05403, Plasmodium_HRP, Plasmodium histidine-ri	0.003
COG4531		318	COG4531, ZnuA, ABC-type Zn2+ transport system, per	0.003
PRK09545		311	PRK09545, znuA, high-affinity zinc transporter per	0.003
pfam10986		161	pfam10986, DUF2796, Protein of unknown function (D	0.004

>gnl\|CDD\|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	Back alignment and domain information

 Score =  141 bits (358), Expect = 3e-37
 Identities = 49/137 (35%), Positives = 85/137 (62%)

Query: 411 SERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRL 470
           + R  R++ + LL+N  +M++E + G ++ SL L++DA HML D  AL + L A  ++R 
Sbjct: 17  NPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARR 76

Query: 471 PANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLL 530
           PA  +F +G  R E+L+ + NA+ L++V  LI+ E+ +R+L P  I  + +L V+I GL+
Sbjct: 77  PATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIHYSGMLVVAIIGLV 136

Query: 531 VNVIGLIFFHEEHHHAH 547
           VN++  +  H+ H    
Sbjct: 137 VNLVSALLLHKGHEENL 153

Length = 296

>gnl\|CDD\|233348 TIGR01297, CDF, cation diffusion facilitator family transporter	Back alignment and domain information

>gnl\|CDD\|233348 TIGR01297, CDF, cation diffusion facilitator family transporter	Back alignment and domain information

>gnl\|CDD\|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|216561 pfam01545, Cation_efflux, Cation efflux family	Back alignment and domain information

>gnl\|CDD\|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional	Back alignment and domain information

>gnl\|CDD\|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|216561 pfam01545, Cation_efflux, Cation efflux family	Back alignment and domain information

>gnl\|CDD\|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional	Back alignment and domain information

>gnl\|CDD\|193258 pfam12782, Innate_immun, Invertebrate innate immunity transcript family	Back alignment and domain information

>gnl\|CDD\|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|237323 PRK13263, ureE, urease accessory protein UreE; Provisional	Back alignment and domain information

>gnl\|CDD\|218578 pfam05403, Plasmodium_HRP, Plasmodium histidine-rich protein (HRPII/III)	Back alignment and domain information

>gnl\|CDD\|237323 PRK13263, ureE, urease accessory protein UreE; Provisional	Back alignment and domain information

>gnl\|CDD\|193258 pfam12782, Innate_immun, Invertebrate innate immunity transcript family	Back alignment and domain information

>gnl\|CDD\|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional	Back alignment and domain information

>gnl\|CDD\|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796)	Back alignment and domain information

>gnl\|CDD\|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region	Back alignment and domain information

>gnl\|CDD\|193258 pfam12782, Innate_immun, Invertebrate innate immunity transcript family	Back alignment and domain information

>gnl\|CDD\|218578 pfam05403, Plasmodium_HRP, Plasmodium histidine-rich protein (HRPII/III)	Back alignment and domain information

>gnl\|CDD\|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional	Back alignment and domain information

>gnl\|CDD\|237323 PRK13263, ureE, urease accessory protein UreE; Provisional	Back alignment and domain information

>gnl\|CDD\|237323 PRK13263, ureE, urease accessory protein UreE; Provisional	Back alignment and domain information

>gnl\|CDD\|226908 COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed	Back alignment and domain information

>gnl\|CDD\|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region	Back alignment and domain information

>gnl\|CDD\|218578 pfam05403, Plasmodium_HRP, Plasmodium histidine-rich protein (HRPII/III)	Back alignment and domain information

>gnl\|CDD\|226908 COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed	Back alignment and domain information

>gnl\|CDD\|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		830
KOG1484		354	consensus Putative Zn2+ transporter MSC2 (cation d	100.0
COG1230		296	CzcD Co/Zn/Cd efflux system component [Inorganic i	100.0
KOG1483		404	consensus Zn2+ transporter ZNT1 and related Cd2+/Z	100.0
PRK03557		312	zinc transporter ZitB; Provisional	100.0
KOG1482		379	consensus Zn2+ transporter [Inorganic ion transpor	100.0
PRK09509		299	fieF ferrous iron efflux protein F; Reviewed	100.0
COG0053		304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	100.0
TIGR01297		268	CDF cation diffusion facilitator family transporte	100.0
PF01545		284	Cation_efflux: Cation efflux family; InterPro: IPR	100.0
KOG1485		412	consensus Mitochondrial Fe2+ transporter MMT1 and	99.97
COG3965		314	Predicted Co/Zn/Cd cation transporters [Inorganic	99.85
COG0053		304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	99.65
KOG2802		503	consensus Membrane protein HUEL (cation efflux sup	99.56
PRK09509		299	fieF ferrous iron efflux protein F; Reviewed	99.49
PRK03557		312	zinc transporter ZitB; Provisional	99.34
TIGR01297		268	CDF cation diffusion facilitator family transporte	99.29
KOG1485		412	consensus Mitochondrial Fe2+ transporter MMT1 and	98.68
PF01545		284	Cation_efflux: Cation efflux family; InterPro: IPR	98.59
COG1230		296	CzcD Co/Zn/Cd efflux system component [Inorganic i	98.49
KOG1484		354	consensus Putative Zn2+ transporter MSC2 (cation d	96.26
KOG1482		379	consensus Zn2+ transporter [Inorganic ion transpor	93.68
PF02535		317	Zip: ZIP Zinc transporter; InterPro: IPR003689 The	88.36
PRK10019		279	nickel/cobalt efflux protein RcnA; Provisional	84.71

>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=8.5e-61  Score=507.09  Aligned_cols=333  Identities=53%  Similarity=0.803  Sum_probs=288.9

Q ss_pred             chhhhhccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 046783          396 ESFSSLIMKPIRHILSERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQ  475 (830)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~r~l~~~L~iNl~l~ivel~~G~lsgSlaLiADAlHsl~D~~s~~l~L~al~~s~~p~d~~  475 (830)
                      .+..+.+++..+++..++++|+++.++++|+.++.+|+++|.++||++|++|++||++||.++.++|++..+++||+|.+
T Consensus        15 ~s~~~~~~~~~r~il~~~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~   94 (354)
T KOG1484|consen   15 DSIPRKINSWFRQILSDKDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDK   94 (354)
T ss_pred             hhhHHHHHHHHHhhccCcchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccc
Confidence            44455566677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHHHHHHHHHHhhccccccCCccccCC
Q 046783          476 FNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLLVNVIGLIFFHEEHHHAHGGVCSHSH  555 (830)
Q Consensus       476 ~~yG~~R~E~Laalv~ai~Ll~i~~~Il~EsI~rLi~p~~i~~~~ll~Vsi~gLivNlv~~~~~~~~h~H~Hgg~~~h~h  555 (830)
                      |+|||+|+|++++|++++++.+++++|+.|+++|+++|+|+.++.+++|+++|+++|++|++.|+..|+|+||+.+.++|
T Consensus        95 fsyG~~r~evLagF~n~vflvl~a~fi~~Es~eRl~~ppei~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~  174 (354)
T KOG1484|consen   95 FSYGYGRIEVLAGFVNGVFLVLIAFFIFSESVERLFDPPEIHTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSH  174 (354)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCchhcCCceeEEeeHHHHHHHHHHHHHhccccccccCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999998766666663111111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCcccCCCCCccCCccccccccCCCCCCCCCCC
Q 046783          556 SHSHSHPHHHHQHSHDHEGHGKRQECISISHESNEKSCSSHDHHHCTGHTAHHHGRRDHCDSTLKHEHTHGYDDQGLGDQ  635 (830)
Q Consensus       556 ~h~~sh~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~  635 (830)
                      +   +|...     .+|..                                                             
T Consensus       175 ~---~h~~~-----~~~~~-------------------------------------------------------------  185 (354)
T KOG1484|consen  175 S---GHLAL-----LFHSL-------------------------------------------------------------  185 (354)
T ss_pred             c---cchhc-----ccccc-------------------------------------------------------------
Confidence            0   00000     00000                                                             


Q ss_pred             CCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046783          636 HSHRDHTHKHNNHYHHHPANHNFHAHEHDDHDHHHHADHHEPLKHDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKY  715 (830)
Q Consensus       636 ~~~~~~~h~~~~~~~~h~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~nm~~vflHvlaD~lgSVgViIs~lli~~  715 (830)
                              .+..+.|+|.+   .                     +.+.+.+.+|.++|+|+++|++||+||+|+++++++
T Consensus       186 --------~~~~~~~~~~~---~---------------------~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~  233 (354)
T KOG1484|consen  186 --------LGVWDLHHHAH---G---------------------HIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKL  233 (354)
T ss_pred             --------ccccccccccc---c---------------------ccCCcccccccchhHHHHHHHhcchHHHHHHHHHHh
Confidence                    00000000000   0                     001123457889999999999999999999999999


Q ss_pred             hCCccchhhhHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHcccCcceeeEEEEEEEcCCeEEEEEEE
Q 046783          716 KGWLVADPACSIFISLLIVSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNL  795 (830)
Q Consensus       716 ~gw~~~DPi~SiiIsilIl~sa~pLlk~s~~iLLq~~P~~~e~~l~~i~~~i~~i~GV~~V~dlhiW~l~~~~~V~svHV  795 (830)
                      +||.++||+|+++|+++|+.+++||+|+++++|||++||+++.++++++++|.+++||.++.+.|+|+++.+.++|++|+
T Consensus       234 ~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tPp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl  313 (354)
T KOG1484|consen  234 FGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTPPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHL  313 (354)
T ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCHHHHHHHHHHHHhcCCCCeEEEEEEec
Q 046783          796 HVSSEADMVSIKAQVSHMLSDAGIKDLTLQVECV  829 (830)
Q Consensus       796 ~V~~~~~~~~I~~~V~~il~~~gI~~vTIQiE~~  829 (830)
                      +|..|+|++.+.+++.+++++.||+++|||+|+.
T Consensus       314 ~V~~dade~~vl~~V~~~~~~~gV~~ltvQv~~~  347 (354)
T KOG1484|consen  314 QVSSDADEQSVLAHVTRKLEDAGVKDLTVQVEKE  347 (354)
T ss_pred             EEecCcchhHHHHHHHHHHHhcceeEEEEEEecc
Confidence            9999999999999999999999999999999975

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03557 zinc transporter ZitB; Provisional	Back alignment and domain information

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09509 fieF ferrous iron efflux protein F; Reviewed	Back alignment and domain information

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01297 CDF cation diffusion facilitator family transporter	Back alignment and domain information

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt	Back alignment and domain information

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]	Back alignment and domain information

>PRK09509 fieF ferrous iron efflux protein F; Reviewed	Back alignment and domain information

>PRK03557 zinc transporter ZitB; Provisional	Back alignment and domain information

>TIGR01297 CDF cation diffusion facilitator family transporter	Back alignment and domain information

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt	Back alignment and domain information

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms []	Back alignment and domain information

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		830
3h90_A		283	Ferrous-iron efflux pump FIEF; membrane protein, z	1e-19
3h90_A		283	Ferrous-iron efflux pump FIEF; membrane protein, z	3e-07
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	9e-07
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-06
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	2e-05
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	4e-05
1pq4_A		291	Periplasmic binding protein component of AN ABC T	2e-06
1pq4_A		291	Periplasmic binding protein component of AN ABC T	9e-06
1pq4_A		291	Periplasmic binding protein component of AN ABC T	1e-05
1pq4_A		291	Periplasmic binding protein component of AN ABC T	1e-05
1pq4_A		291	Periplasmic binding protein component of AN ABC T	5e-05
1pq4_A		291	Periplasmic binding protein component of AN ABC T	7e-05
1pq4_A		291	Periplasmic binding protein component of AN ABC T	1e-04
1pq4_A		291	Periplasmic binding protein component of AN ABC T	1e-04
1pq4_A		291	Periplasmic binding protein component of AN ABC T	5e-04
1pq4_A		291	Periplasmic binding protein component of AN ABC T	7e-04
2kfw_A		196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	4e-05
1ck7_A		631	Protein (gelatinase A); hydrolase (metalloprotease	7e-04

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283	Back alignment and structure

 Score = 89.2 bits (222), Expect = 1e-19
 Identities = 21/121 (17%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 416 RKIALF-LLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANS 474
            + A+    + +  ++++  A + + S+ +++     L D  A    L     S  PA+ 
Sbjct: 3   SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD 62

Query: 475 QFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSL-LTVSIGGLLVNV 533
             ++G G+ E L+    ++F+      + L   + ++ P  ++   + + V+I  L+  +
Sbjct: 63  NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTI 122

Query: 534 I 534
           I
Sbjct: 123 I 123

PyMOL of 3h90

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291	Back alignment and structure

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196	Back alignment and structure

>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Length = 631	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		830
3h90_A		283	Ferrous-iron efflux pump FIEF; membrane protein, z	100.0
3j1z_P		306	YIIP, cation efflux family protein; zinc transport	100.0
3j1z_P		306	YIIP, cation efflux family protein; zinc transport	99.35
3h90_A		283	Ferrous-iron efflux pump FIEF; membrane protein, z	99.35
3byp_A		94	CZRB protein; membrane protein, zinc transporter,	99.05
2zzt_A		107	Putative uncharacterized protein; cation diffusion	98.9

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A	Back alignment and structure

Probab=100.00  E-value=4.1e-47  Score=406.91  Aligned_cols=274  Identities=19%  Similarity=0.274  Sum_probs=250.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHH
Q 046783          415 SRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNAVF  494 (830)
Q Consensus       415 ~r~l~~~L~iNl~l~ivel~~G~lsgSlaLiADAlHsl~D~~s~~l~L~al~~s~~p~d~~~~yG~~R~E~Laalv~ai~  494 (830)
                      +|.+++++++|++++++|+++|+++||++|+|||+||++|++++++++++.++++||+|++|||||+|+|++++++++++
T Consensus         3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~   82 (283)
T 3h90_A            3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF   82 (283)
T ss_dssp             CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccchhH-HHHHHHHHHHHHHHHHHHHhhccccccCCccccCCCCCCCCCCCCCCCCCCCC
Q 046783          495 LVLVGALIVLESFERILDPQEISTNS-LLTVSIGGLLVNVIGLIFFHEEHHHAHGGVCSHSHSHSHSHPHHHHQHSHDHE  573 (830)
Q Consensus       495 Ll~i~~~Il~EsI~rLi~p~~i~~~~-ll~Vsi~gLivNlv~~~~~~~~h~H~Hgg~~~h~h~h~~sh~~~h~~~~~~~~  573 (830)
                      ++++++++++|+++++++|++++.+. +++++++++++|.+.+++.++.                               
T Consensus        83 l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~~-------------------------------  131 (283)
T 3h90_A           83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWV-------------------------------  131 (283)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence            99999999999999999999887765 4889999999999988887641                               


Q ss_pred             CCCCcccccccccccccccCCCCCCCCCCCCcccCCCCCccCCccccccccCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 046783          574 GHGKRQECISISHESNEKSCSSHDHHHCTGHTAHHHGRRDHCDSTLKHEHTHGYDDQGLGDQHSHRDHTHKHNNHYHHHP  653 (830)
Q Consensus       574 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~h~~~~~~~~h~  653 (830)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (283)
T 3h90_A          132 --------------------------------------------------------------------------------  131 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhHHHHHHHH
Q 046783          654 ANHNFHAHEHDDHDHHHHADHHEPLKHDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISLLI  733 (830)
Q Consensus       654 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~nm~~vflHvlaD~lgSVgViIs~lli~~~gw~~~DPi~SiiIsilI  733 (830)
                                                 .++.+|.|++++++|.++|+++|++|+++.++ .++||+|+||+++++|+++|
T Consensus       132 ---------------------------~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~-~~~g~~~~D~i~~i~ia~~i  183 (283)
T 3h90_A          132 ---------------------------VRRTQSQAVRADMLHYQSDVMMNGAILLALGL-SWYGWHRADALFALGIGIYI  183 (283)
T ss_dssp             ---------------------------HHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCS-CSTTSCCSTHHHHHHHHHHH
T ss_pred             ---------------------------HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHH
Confidence                                       01124679999999999999999999999877 56799999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHcccCcceeeEEEEEEEcCCeEEEEEEEEECCCCC---HHHHHHHH
Q 046783          734 VSSVIPLLRNSAEILLQRVSRAHELDLKETLNDVMKISGVHGIQNLHLWSFTSTDVVGTLNLHVSSEAD---MVSIKAQV  810 (830)
Q Consensus       734 l~sa~pLlk~s~~iLLq~~P~~~e~~l~~i~~~i~~i~GV~~V~dlhiW~l~~~~~V~svHV~V~~~~~---~~~I~~~V  810 (830)
                      ++++++++|++.+.|||++|+  +++.+++++.++++|||.++||+|+|+.|+. +.+++||+++++.+   .++|.+++
T Consensus       184 ~~~~~~l~~~s~~~Ll~~~~~--~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~-~~v~~hv~v~~~~~~~~~~~i~~~i  260 (283)
T 3h90_A          184 LYSALRMGYEAVQSLLDRALP--DEERQEIIDIVTSWPGVSGAHDLRTRQSGPT-RFIQIHLEMEDSLPLVQAHMVADQV  260 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHSSSCSEEEEEEEEEETTE-EEEEEEEECCTTCBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCCCcccceeeEEEEECCc-EEEEEEEEeCCCCCHHHHHHHHHHH
Confidence            999999999999999999998  6788999999999999999999999999865 55699999999874   56899999


Q ss_pred             HHHHh-cCCCCeEEEEEEecC
Q 046783          811 SHMLS-DAGIKDLTLQVECVR  830 (830)
Q Consensus       811 ~~il~-~~gI~~vTIQiE~~~  830 (830)
                      ++.++ ++++.++|||+||++
T Consensus       261 ~~~l~~~~~~~~v~ih~ep~~  281 (283)
T 3h90_A          261 EQAILRRFPGSDVIIHQDPCS  281 (283)
T ss_dssp             HHHHHHHSTTCEEEEEEECSC
T ss_pred             HHHHHHHCCCCeEEEEeccCC
Confidence            99997 578899999999974

PyMOL of 3h90

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}	Back alignment and structure

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}	Back alignment and structure

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A	Back alignment and structure

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A	Back alignment and structure

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		830
d2qfia2		204	f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {	1e-17
d2qfia2		204	f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {	5e-11
d1fgja_		499	a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO {	7e-05
d1sp3a_		442	a.138.1.3 (A:) Putative Cytochrome c {Shewanella o	3e-04
d1zlqa1		499	c.94.1.1 (A:3-501) Nickel-binding periplasmic prot	8e-04
d2cvca1		505	a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA {De	0.002
d1ofwa_		293	a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibr	0.003
d1gtra2		331	c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (Gln	0.004

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

 Score = 79.8 bits (196), Expect = 1e-17
 Identities = 22/149 (14%), Positives = 54/149 (36%)

Query: 411 SERKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRL 470
               SR       + +  ++++  A + + S+ +++     L D  A    L     S  
Sbjct: 2   GRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQ 61

Query: 471 PANSQFNYGRGRFEVLSGYTNAVFLVLVGALIVLESFERILDPQEISTNSLLTVSIGGLL 530
           PA+   ++G G+ E L+    ++F+      + L   + ++ P  ++   +  +     L
Sbjct: 62  PADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 121

Query: 531 VNVIGLIFFHEEHHHAHGGVCSHSHSHSH 559
           +  I L+ F              +    +
Sbjct: 122 ICTIILVSFQRWVVRRTQSQAVRADMLHY 150

PyMOL of d2qfia2

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204	Back information, alignment and structure

>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO {Nitrosomonas europaea [TaxId: 915]} Length = 499	Back information, alignment and structure

>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA {Escherichia coli [TaxId: 562]} Length = 499	Back information, alignment and structure

>d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA {Desulfovibrio vulgaris [TaxId: 881]} Length = 505	Back information, alignment and structure

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Length = 331	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		830
d2qfia2		204	Ferrous-iron efflux pump FieF {Escherichia coli [T	99.93
d2qfia2		204	Ferrous-iron efflux pump FieF {Escherichia coli [T	98.62
d2qfia1		82	Ferrous-iron efflux pump FieF (YiiP) {Escherichia	98.39
d3bypa1		82	Putative Zinc transporter CzrB {Thermus thermophil	98.36

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.4e-33  Score=280.69  Aligned_cols=200  Identities=20%  Similarity=0.324  Sum_probs=173.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHH
Q 046783          413 RKSRKIALFLLINTGYMVVEFVAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANSQFNYGRGRFEVLSGYTNA  492 (830)
Q Consensus       413 ~~~r~l~~~L~iNl~l~ivel~~G~lsgSlaLiADAlHsl~D~~s~~l~L~al~~s~~p~d~~~~yG~~R~E~Laalv~a  492 (830)
                      ..+|.++.++++|++++++|+++|+++||++|+|||+|++.|++++++++++.+.++||+|++|||||+|+|++++++++
T Consensus         4 ~~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~   83 (204)
T d2qfia2           4 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQS   83 (204)
T ss_dssp             SSSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccCCcchhHHHHHHHHHHH
Confidence            44566888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCccchhHH-HHHHHHHHHHHHHHHHHHhhccccccCCccccCCCCCCCCCCCCCCCCCC
Q 046783          493 VFLVLVGALIVLESFERILDPQEISTNSL-LTVSIGGLLVNVIGLIFFHEEHHHAHGGVCSHSHSHSHSHPHHHHQHSHD  571 (830)
Q Consensus       493 i~Ll~i~~~Il~EsI~rLi~p~~i~~~~l-l~Vsi~gLivNlv~~~~~~~~h~H~Hgg~~~h~h~h~~sh~~~h~~~~~~  571 (830)
                      ++++++++++++|+++++++|+++..+.+ +++++++.+++++...+..+                              
T Consensus        84 ~~l~~~~~~~~~~si~~l~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~------------------------------  133 (204)
T d2qfia2          84 MFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRW------------------------------  133 (204)
T ss_dssp             TTTSSSTTGGGSSCTTSSTTTSSSSTTTSCCCCCGGGSSCGGGGTTTHHH------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence            99999999999999999999988766543 45555666666554433322                              


Q ss_pred             CCCCCCcccccccccccccccCCCCCCCCCCCCcccCCCCCccCCccccccccCCCCCCCCCCCCCCCcccccCCCCCCC
Q 046783          572 HEGHGKRQECISISHESNEKSCSSHDHHHCTGHTAHHHGRRDHCDSTLKHEHTHGYDDQGLGDQHSHRDHTHKHNNHYHH  651 (830)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~h~~~~~~~~  651 (830)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (204)
T d2qfia2         134 --------------------------------------------------------------------------------  133 (204)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhhhHHHHHH
Q 046783          652 HPANHNFHAHEHDDHDHHHHADHHEPLKHDRRHIDHNMEGIFLHVLADTMGSVGVVISTLLIKYKGWLVADPACSIFISL  731 (830)
Q Consensus       652 h~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~nm~~vflHvlaD~lgSVgViIs~lli~~~gw~~~DPi~SiiIsi  731 (830)
                                                  ..++..|.++++.+.|++.|++.|++++++.++ .++||+|+||+++++|++
T Consensus       134 ----------------------------~~~~~~s~~~~a~~~~~~~D~~~s~~vii~~~~-~~~~~~~~D~i~aiii~~  184 (204)
T d2qfia2         134 ----------------------------VVRRTQSQAVRADMLHYQSDVMMNGAILLALGL-SWYGWHRADALFALGIGI  184 (204)
T ss_dssp             ----------------------------HGGGCCSTTSGGGGGGHHHHTCCSSTTCCCTTS-SCSSTTSSSSSSHHHHTT
T ss_pred             ----------------------------hhcccchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhCchhhhHHHHHHHHH
Confidence                                        011224568889999999999999999997665 456999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhc
Q 046783          732 LIVSSVIPLLRNSAEILLQR  751 (830)
Q Consensus       732 lIl~sa~pLlk~s~~iLLq~  751 (830)
                      +|+.++++++||+.+.|||+
T Consensus       185 ~i~~~~~~~~~~~~~~Lld~  204 (204)
T d2qfia2         185 YILYSALRMGYEAVQSLLDR  204 (204)
T ss_dssp             TTTTTTTTHHHHTGGGSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999985

PyMOL of d2qfia2

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure